AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180001514.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001514.01.T01 MTR_5g037680 45.035 433 192 13 56 468 4 410 4.06e-101 312
MsG0180001514.01.T01 MTR_5g086590 73.000 200 53 1 218 416 32 231 8.57e-101 303
MsG0180001514.01.T01 MTR_5g069390 44.949 396 193 9 56 434 22 409 3.28e-93 293
MsG0180001514.01.T01 MTR_5g096910 45.995 387 179 8 55 432 12 377 3.83e-92 287
MsG0180001514.01.T01 MTR_2g022000 42.543 409 192 8 57 435 13 408 8.99e-91 285
MsG0180001514.01.T01 MTR_0129s0070 44.072 388 176 10 57 426 14 378 7.00e-90 281
MsG0180001514.01.T01 MTR_0129s0120 43.939 396 165 10 57 426 14 378 7.26e-89 278
MsG0180001514.01.T01 MTR_5g059430 43.133 415 202 13 56 447 22 425 3.36e-87 275
MsG0180001514.01.T01 MTR_2g038680 42.439 410 177 11 57 433 13 396 5.81e-86 271
MsG0180001514.01.T01 MTR_6g086825 40.952 420 192 10 54 444 64 456 3.11e-84 269
MsG0180001514.01.T01 MTR_3g011120 43.968 373 177 8 55 420 9 356 1.46e-82 261
MsG0180001514.01.T01 MTR_6g080680 40.609 394 166 9 57 420 16 371 1.33e-81 260
MsG0180001514.01.T01 MTR_8g012090 41.361 382 139 9 57 413 13 334 2.59e-81 257
MsG0180001514.01.T01 MTR_2g021800 40.143 421 184 11 57 434 13 408 4.37e-81 259
MsG0180001514.01.T01 MTR_5g097330 40.759 395 188 11 57 427 13 385 8.65e-81 258
MsG0180001514.01.T01 MTR_8g063440 42.228 386 166 12 57 420 9 359 1.86e-78 251
MsG0180001514.01.T01 MTR_5g024260 41.818 385 184 12 55 419 17 381 7.84e-77 248
MsG0180001514.01.T01 MTR_7g069550 40.209 383 191 11 57 419 11 375 4.25e-76 245
MsG0180001514.01.T01 MTR_0054s0100 40.827 387 188 10 58 420 15 384 1.85e-75 244
MsG0180001514.01.T01 MTR_7g017170 39.788 377 194 10 58 420 16 373 3.57e-75 243
MsG0180001514.01.T01 MTR_7g017130 39.894 376 193 10 58 419 16 372 4.92e-75 243
MsG0180001514.01.T01 MTR_0054s0090 40.897 379 197 8 58 420 15 382 4.07e-74 241
MsG0180001514.01.T01 MTR_1g007450 38.832 394 201 11 58 433 10 381 4.90e-73 238
MsG0180001514.01.T01 MTR_2g066170 40.625 384 178 10 57 420 9 362 1.93e-72 236
MsG0180001514.01.T01 MTR_6g079770 37.762 429 179 12 58 437 15 404 2.03e-72 236
MsG0180001514.01.T01 MTR_5g097680 40.094 424 182 16 57 430 14 415 5.31e-72 236
MsG0180001514.01.T01 MTR_0134s0060 37.406 401 191 8 58 420 10 388 5.94e-72 235
MsG0180001514.01.T01 MTR_5g097220 38.710 403 178 9 57 420 10 382 1.44e-71 234
MsG0180001514.01.T01 MTR_0129s0050 38.462 403 180 10 57 420 11 384 1.88e-71 234
MsG0180001514.01.T01 MTR_4g117550 40.506 395 155 14 57 425 14 354 1.94e-71 233
MsG0180001514.01.T01 MTR_7g017040 40.052 382 185 10 58 418 14 372 2.42e-71 233
MsG0180001514.01.T01 MTR_8g041270 40.695 403 167 15 58 420 13 383 3.90e-71 233
MsG0180001514.01.T01 MTR_4g102410 37.731 432 192 13 32 420 29 426 1.72e-70 232
MsG0180001514.01.T01 MTR_2g065860 38.168 393 177 11 57 420 9 364 1.81e-70 231
MsG0180001514.01.T01 MTR_4g028660 37.688 398 198 12 55 428 11 382 2.39e-70 230
MsG0180001514.01.T01 MTR_4g027450 37.688 398 198 12 55 428 11 382 2.39e-70 230
MsG0180001514.01.T01 MTR_8g039500 41.033 368 176 10 57 413 9 346 4.13e-70 228
MsG0180001514.01.T01 MTR_2g104340 39.798 397 170 11 58 420 12 373 4.66e-70 230
MsG0180001514.01.T01 MTR_4g055820 40.053 377 163 10 57 399 11 358 8.28e-70 228
MsG0180001514.01.T01 MTR_6g090180 38.228 395 189 9 57 420 44 414 1.04e-69 230
MsG0180001514.01.T01 MTR_6g461660 40.682 381 189 12 57 420 16 376 2.41e-69 228
MsG0180001514.01.T01 MTR_5g096900 43.953 339 128 10 57 367 9 313 4.81e-69 224
MsG0180001514.01.T01 MTR_2g066200 38.889 378 195 9 57 420 9 364 1.07e-68 226
MsG0180001514.01.T01 MTR_8g464770 38.579 394 212 10 51 436 3 374 5.45e-68 224
MsG0180001514.01.T01 MTR_2g034700 39.837 369 192 7 55 419 9 351 1.02e-67 223
MsG0180001514.01.T01 MTR_6g079810 40.863 394 186 12 55 420 65 439 1.23e-67 225
MsG0180001514.01.T01 MTR_5g091140 40.625 384 164 11 59 418 47 390 1.60e-67 224
MsG0180001514.01.T01 MTR_8g467670 38.564 376 202 11 55 425 9 360 4.65e-67 222
MsG0180001514.01.T01 MTR_4g028510 37.313 402 197 12 55 428 11 385 9.53e-67 223
MsG0180001514.01.T01 MTR_2g021770 38.875 391 190 10 59 419 11 382 9.64e-67 221
MsG0180001514.01.T01 MTR_5g097350 40.385 364 181 11 69 420 25 364 1.32e-66 220
MsG0180001514.01.T01 MTR_5g096630 38.710 403 177 11 59 420 17 390 3.06e-66 220
MsG0180001514.01.T01 MTR_8g064890 39.628 376 195 11 55 420 11 364 4.39e-66 219
MsG0180001514.01.T01 MTR_4g130330 38.660 388 191 10 56 420 3 366 4.42e-66 219
MsG0180001514.01.T01 MTR_8g033140 37.321 418 170 12 56 420 15 393 5.12e-66 220
MsG0180001514.01.T01 MTR_2g021950 38.228 395 207 11 58 434 14 389 5.16e-66 219
MsG0180001514.01.T01 MTR_2g104280 37.817 394 189 12 58 419 12 381 7.94e-66 219
MsG0180001514.01.T01 MTR_2g064950 38.083 386 185 10 58 418 8 364 3.42e-65 217
MsG0180001514.01.T01 MTR_2g065840 35.930 398 196 10 64 434 16 381 6.52e-65 216
MsG0180001514.01.T01 MTR_6g478230 38.847 399 172 14 56 420 23 383 1.71e-64 216
MsG0180001514.01.T01 MTR_2g066150 39.276 387 153 15 57 420 9 336 4.95e-64 213
MsG0180001514.01.T01 MTR_4g028680 39.005 382 201 11 55 420 11 376 8.68e-64 213
MsG0180001514.01.T01 MTR_1g007410 38.046 389 189 11 57 419 19 381 3.75e-63 212
MsG0180001514.01.T01 MTR_4g028750 37.940 398 194 14 56 428 12 381 5.06e-63 211
MsG0180001514.01.T01 MTR_8g036970 35.597 427 189 13 64 474 2 358 2.05e-62 209
MsG0180001514.01.T01 MTR_7g111700 37.028 397 151 11 57 420 12 342 3.06e-62 208
MsG0180001514.01.T01 MTR_5g072060 35.484 403 190 12 58 434 4 362 3.11e-62 215
MsG0180001514.01.T01 MTR_5g097850 50.431 232 88 5 202 420 5 222 7.44e-62 203
MsG0180001514.01.T01 MTR_0831s0010 37.270 381 194 11 56 420 46 397 9.95e-62 209
MsG0180001514.01.T01 MTR_7g079640 37.696 382 177 13 59 420 12 352 1.07e-61 207
MsG0180001514.01.T01 MTR_8g063330 37.802 373 169 13 56 399 10 348 1.44e-60 207
MsG0180001514.01.T01 MTR_5g092850 36.432 398 191 13 54 420 10 376 9.49e-59 200
MsG0180001514.01.T01 MTR_8g013000 36.436 376 178 12 58 402 8 353 2.44e-58 199
MsG0180001514.01.T01 MTR_1g053510 37.379 412 203 13 55 434 10 398 3.92e-58 199
MsG0180001514.01.T01 MTR_5g092860 37.736 371 162 14 78 420 20 349 5.84e-58 197
MsG0180001514.01.T01 MTR_1g007430 37.853 354 162 10 71 402 7 324 8.56e-57 192
MsG0180001514.01.T01 MTR_6g090250 35.238 420 182 16 78 437 29 418 8.09e-56 193
MsG0180001514.01.T01 MTR_8g046310 38.005 371 196 13 55 419 11 353 1.49e-55 191
MsG0180001514.01.T01 MTR_4g007940 38.690 336 162 11 109 420 3 318 2.44e-55 189
MsG0180001514.01.T01 MTR_4g014370 34.783 414 196 14 50 419 1 384 3.91e-55 191
MsG0180001514.01.T01 MTR_5g097540 40.196 306 110 6 97 402 1 233 8.14e-55 186
MsG0180001514.01.T01 MTR_8g032980 35.849 424 173 12 56 419 12 396 2.91e-54 189
MsG0180001514.01.T01 MTR_1g098180 35.492 386 178 11 56 424 15 346 9.17e-54 186
MsG0180001514.01.T01 MTR_5g074850 38.653 401 177 21 57 420 32 400 1.18e-53 195
MsG0180001514.01.T01 MTR_5g074800 36.888 347 166 13 99 419 1 320 2.51e-53 184
MsG0180001514.01.T01 MTR_5g097820 42.857 259 138 3 56 312 19 269 8.14e-53 180
MsG0180001514.01.T01 MTR_7g016930 36.415 357 178 8 57 402 13 331 1.00e-51 179
MsG0180001514.01.T01 MTR_8g046220 36.430 409 171 15 56 417 13 379 1.00e-51 181
MsG0180001514.01.T01 MTR_5g075370 37.221 403 185 20 56 420 4 376 2.71e-51 187
MsG0180001514.01.T01 MTR_8g064790 34.783 368 172 10 55 419 10 312 1.44e-49 174
MsG0180001514.01.T01 MTR_8g033110 35.849 424 173 18 54 419 8 390 1.71e-49 176
MsG0180001514.01.T01 MTR_8g018110 33.816 414 177 15 54 419 8 372 4.07e-48 172
MsG0180001514.01.T01 MTR_6g078010 36.657 341 169 12 97 420 1 311 3.43e-47 168
MsG0180001514.01.T01 MTR_5g064700 35.279 377 178 17 99 430 1 356 1.70e-46 166
MsG0180001514.01.T01 MTR_8g046200 34.053 417 193 13 56 420 12 398 2.17e-46 167
MsG0180001514.01.T01 MTR_1g050308 35.185 378 149 11 57 420 31 326 9.08e-46 164
MsG0180001514.01.T01 MTR_8g033090 33.254 421 185 13 54 419 8 387 1.52e-45 165
MsG0180001514.01.T01 MTR_6g004450 44.601 213 93 6 232 433 52 250 2.02e-45 160
MsG0180001514.01.T01 MTR_4g014370 33.509 379 169 14 48 419 10 312 3.52e-43 157
MsG0180001514.01.T01 MTR_6g090260 46.486 185 88 5 242 420 59 238 2.36e-42 152
MsG0180001514.01.T01 MTR_6g090260 60.714 56 21 1 55 109 15 70 9.41e-12 65.9
MsG0180001514.01.T01 MTR_2g021920 41.453 234 106 7 228 434 36 265 2.63e-42 152
MsG0180001514.01.T01 MTR_3g028060 75.490 102 25 0 421 522 208 309 2.85e-42 153
MsG0180001514.01.T01 MTR_3g034370 72.381 105 29 0 421 525 174 278 5.29e-42 152
MsG0180001514.01.T01 MTR_5g023970 48.466 163 79 3 262 420 10 171 8.71e-42 149
MsG0180001514.01.T01 MTR_8g063310 30.649 385 216 14 57 420 19 373 8.72e-42 155
MsG0180001514.01.T01 MTR_1g050312 37.624 303 123 10 137 420 16 271 1.64e-41 150
MsG0180001514.01.T01 MTR_6g079790 41.935 217 106 7 223 420 70 285 3.11e-41 150
MsG0180001514.01.T01 MTR_8g063370 31.347 386 204 12 56 419 20 366 3.63e-41 153
MsG0180001514.01.T01 MTR_5g094350 39.510 286 137 10 59 329 12 276 1.50e-40 148
MsG0180001514.01.T01 MTR_5g076490 38.816 304 141 12 137 419 31 310 6.78e-40 148
MsG0180001514.01.T01 MTR_5g043605 44.118 204 97 6 229 424 126 320 8.06e-40 148
MsG0180001514.01.T01 MTR_5g066420 54.412 136 55 2 292 420 1 136 2.23e-39 140
MsG0180001514.01.T01 MTR_5g096920 53.731 134 59 2 292 424 1 132 5.39e-39 139
MsG0180001514.01.T01 MTR_5g022850 30.052 386 174 12 59 419 15 329 2.76e-37 141
MsG0180001514.01.T01 MTR_6g087620 32.372 312 135 8 137 420 1 264 2.38e-36 136
MsG0180001514.01.T01 MTR_3g034540 62.857 105 39 0 418 522 19 123 2.94e-35 128
MsG0180001514.01.T01 MTR_7g023800 30.793 328 180 9 99 420 1 287 8.21e-35 133
MsG0180001514.01.T01 MTR_6g009350 41.579 190 92 7 232 407 11 195 2.05e-34 129
MsG0180001514.01.T01 MTR_3g034410 69.388 98 24 1 421 518 172 263 2.33e-34 130
MsG0180001514.01.T01 MTR_8g035690 35.424 271 127 10 192 419 13 278 1.32e-33 129
MsG0180001514.01.T01 MTR_5g068490 40.212 189 100 6 233 419 76 253 1.74e-33 129
MsG0180001514.01.T01 MTR_4g016000 46.286 175 66 7 232 394 32 190 5.51e-33 125
MsG0180001514.01.T01 MTR_3g018750 35.622 233 113 6 229 430 3 229 1.88e-32 124
MsG0180001514.01.T01 MTR_8g033000 40.094 212 100 7 217 419 145 338 2.96e-32 127
MsG0180001514.01.T01 MTR_1g115205 35.379 277 114 10 40 299 8 236 2.98e-32 124
MsG0180001514.01.T01 MTR_7g019250 40.594 202 91 6 232 420 227 412 1.03e-31 128
MsG0180001514.01.T01 MTR_2g104260 36.237 287 138 10 58 320 12 277 1.16e-31 123
MsG0180001514.01.T01 MTR_8g063350 30.000 370 184 13 60 418 14 319 2.57e-31 124
MsG0180001514.01.T01 MTR_5g096050 56.881 109 34 2 292 387 1 109 6.36e-31 116
MsG0180001514.01.T01 MTR_6g070880 33.462 260 117 8 57 286 29 262 1.93e-30 120
MsG0180001514.01.T01 MTR_6g071420 33.462 260 117 8 57 286 29 262 1.93e-30 120
MsG0180001514.01.T01 MTR_5g097660 61.290 93 35 1 328 419 3 95 2.73e-30 115
MsG0180001514.01.T01 MTR_1g076810 33.878 245 113 5 57 283 15 228 3.26e-30 125
MsG0180001514.01.T01 MTR_6g465360 39.512 205 82 6 58 244 60 240 1.03e-29 118
MsG0180001514.01.T01 MTR_6g079730 49.558 113 57 0 308 420 14 126 4.68e-28 109
MsG0180001514.01.T01 MTR_5g037190 33.955 268 137 9 58 315 14 251 1.16e-27 111
MsG0180001514.01.T01 MTR_8g073570 39.572 187 85 7 58 240 8 170 2.51e-26 105
MsG0180001514.01.T01 MTR_7g017120 42.331 163 89 2 262 420 80 241 5.52e-26 107
MsG0180001514.01.T01 MTR_5g098950 34.921 189 91 4 220 402 112 274 6.64e-26 107
MsG0180001514.01.T01 MTR_7g017150 41.718 163 90 2 262 420 81 242 1.28e-25 106
MsG0180001514.01.T01 MTR_3g030620 44.366 142 67 5 288 420 19 157 1.99e-25 103
MsG0180001514.01.T01 MTR_5g086780 46.667 105 56 0 316 420 124 228 3.80e-25 103
MsG0180001514.01.T01 MTR_5g086780 67.347 49 13 1 58 103 14 62 1.66e-11 64.7
MsG0180001514.01.T01 MTR_5g091150 47.154 123 40 3 230 352 89 186 3.35e-23 97.8
MsG0180001514.01.T01 MTR_7g104710 55.556 99 34 3 57 153 14 104 1.03e-22 99.4
MsG0180001514.01.T01 MTR_7g104710 36.364 110 58 2 260 357 175 284 1.88e-11 65.9
MsG0180001514.01.T01 MTR_5g097650 50.962 104 36 1 54 157 16 104 1.57e-22 94.7
MsG0180001514.01.T01 MTR_8g041440 51.000 100 26 1 57 156 12 88 2.29e-21 89.7
MsG0180001514.01.T01 MTR_5g096070 34.694 196 54 5 57 237 23 159 3.53e-21 90.9
MsG0180001514.01.T01 MTR_5g036250 61.194 67 26 0 354 420 22 88 9.89e-21 90.1
MsG0180001514.01.T01 MTR_2g022020 43.878 98 55 0 323 420 1 98 1.10e-19 85.1
MsG0180001514.01.T01 MTR_3g019290 32.735 223 87 9 56 269 10 178 2.16e-18 83.6
MsG0180001514.01.T01 MTR_3g047580 53.030 66 31 0 55 120 9 74 1.90e-17 79.0
MsG0180001514.01.T01 MTR_7g101200 33.702 181 83 8 238 401 68 228 2.29e-17 82.0
MsG0180001514.01.T01 MTR_1g050305 54.321 81 32 2 345 420 21 101 3.30e-15 73.2
MsG0180001514.01.T01 MTR_0003s0580 39.474 114 66 2 411 523 202 313 4.66e-15 76.6
MsG0180001514.01.T01 MTR_3g097190 54.237 59 27 0 359 417 23 81 2.03e-14 72.0
MsG0180001514.01.T01 MTR_3g047540 44.872 78 41 2 261 336 4 81 1.48e-13 66.6
MsG0180001514.01.T01 MTR_4g094400 36.220 127 54 3 288 398 6 121 5.21e-13 66.6
MsG0180001514.01.T01 MTR_6g087660 52.174 69 31 1 55 121 13 81 6.86e-13 67.8
MsG0180001514.01.T01 MTR_1g082540 81.081 37 7 0 1 37 1 37 2.49e-12 63.2
MsG0180001514.01.T01 MTR_8g041490 41.000 100 27 2 57 156 12 79 1.05e-11 62.0
MsG0180001514.01.T01 MTR_5g097730 69.231 39 12 0 366 404 15 53 1.24e-11 60.5
MsG0180001514.01.T01 MTR_5g049520 80.556 36 7 0 384 419 22 57 2.01e-11 63.2
MsG0180001514.01.T01 MTR_4g133170 25.121 207 135 8 218 413 132 329 8.25e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 108 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTATTTGTATTCTCTTTC+TGG 0.078612 1:+22437037 MsG0180001514.01.T01:CDS
CCTTGCCTCGATCATCTTAT+TGG 0.174104 1:+22437876 MsG0180001514.01.T01:CDS
GTGTGCCATCTGATCAATTT+TGG 0.179842 1:+22437496 MsG0180001514.01.T01:CDS
AACAATTTACATTTCAGTTT+TGG 0.202229 1:+22437800 MsG0180001514.01.T01:CDS
TTGAAAGCCACCGACTAATT+TGG 0.229090 1:-22439097 None:intergenic
TGCCCGAGAATAATCCTTCT+TGG 0.252645 1:+22437373 MsG0180001514.01.T01:intron
ACACGATTAGGGTTAAATTT+TGG 0.252670 1:-22437477 None:intergenic
AATACAAATAATAATAAATT+TGG 0.260490 1:-22437027 None:intergenic
CAGATTTCTCTGAAATTTCT+TGG 0.274346 1:-22438998 None:intergenic
TGATCAGATGGCACACGATT+AGG 0.277260 1:-22437489 None:intergenic
AACAGAAACAAATACGTATT+TGG 0.278603 1:+22437632 MsG0180001514.01.T01:CDS
AAACGCTTCAAAGATTTAAA+AGG 0.279731 1:-22436851 None:intergenic
CTCTGCAAATATGACAGTTT+TGG 0.311579 1:+22436013 None:intergenic
TAATCCTTCTTGGTATGTTT+CGG 0.353019 1:+22437383 MsG0180001514.01.T01:CDS
TTTGTTGCTCATCTTGTTGA+TGG 0.355796 1:+22438952 MsG0180001514.01.T01:CDS
CTCTTATGTAGATGACAGTT+TGG 0.358287 1:+22437701 MsG0180001514.01.T01:CDS
AACAAGGGTTGTCAAATAAG+AGG 0.367149 1:-22436898 None:intergenic
CTCGATCATCTTATTGGAGC+TGG 0.375804 1:+22437882 MsG0180001514.01.T01:CDS
GATCAGATGGCACACGATTA+GGG 0.376900 1:-22437488 None:intergenic
AGAATAGAGTCAAATTAGAT+TGG 0.387136 1:+22437071 MsG0180001514.01.T01:CDS
ACTTTGCTGATGTTAACAAA+TGG 0.407749 1:+22436069 MsG0180001514.01.T01:CDS
GCTAAGCCATACATGGAGTT+AGG 0.410282 1:+22438817 MsG0180001514.01.T01:intron
CAAACTGTCATCTACATAAG+AGG 0.411595 1:-22437700 None:intergenic
GTCATCTACATAAGAGGGTA+TGG 0.414415 1:-22437694 None:intergenic
CCATCATCATCCTCTTGAAA+TGG 0.419953 1:-22437232 None:intergenic
CTTTGCTGATGTTAACAAAT+GGG 0.426171 1:+22436070 MsG0180001514.01.T01:CDS
GCTGGTCTTCTCAAAACTAT+AGG 0.426901 1:-22437148 None:intergenic
AAAGAATACCATTAAAACTA+AGG 0.435281 1:-22437272 None:intergenic
ACATCCTCGGTCAAAGCCTT+TGG 0.445894 1:-22437094 None:intergenic
TTAATAACATCAAGTCTCTC+TGG 0.447534 1:-22437737 None:intergenic
TCATCATCATCCTCCTCATC+TGG 0.447643 1:-22437202 None:intergenic
GCTTGGTTTGATTTAAGTAC+CGG 0.449407 1:+22437948 MsG0180001514.01.T01:CDS
AGAGACTTGATGTTATTAAA+CGG 0.450090 1:+22437741 MsG0180001514.01.T01:CDS
GTTAACATCAGCAAAGTGAA+TGG 0.457251 1:-22436063 None:intergenic
AAATTTGGCGTCTCTCTTGT+GGG 0.462152 1:-22437012 None:intergenic
ATAGCCTACGCAGTAACTCT+TGG 0.465302 1:+22437526 MsG0180001514.01.T01:CDS
CCATTTCAAGAGGATGATGA+TGG 0.471596 1:+22437232 MsG0180001514.01.T01:CDS
TCGGCCGATCATTATCAAAT+CGG 0.473206 1:+22437402 MsG0180001514.01.T01:CDS
TAAATTTGGCGTCTCTCTTG+TGG 0.473870 1:-22437013 None:intergenic
CTGATGTTAACAAATGGGAC+CGG 0.480323 1:+22436075 MsG0180001514.01.T01:CDS
TGTATTCTCTTTCTGGTGAG+AGG 0.484321 1:+22437044 MsG0180001514.01.T01:CDS
TCTTATTGGAGCTGGGAAGA+AGG 0.487007 1:+22437890 MsG0180001514.01.T01:CDS
CGTAATCGAGTGTACTTGAA+TGG 0.494817 1:+22437588 MsG0180001514.01.T01:CDS
AAGATGATCGAGGCAAGGTA+AGG 0.502901 1:-22437871 None:intergenic
TTGAGAAGACCAGCGGTACC+AGG 0.503111 1:+22437157 MsG0180001514.01.T01:CDS
GGATGTCTATCGACTTCAAA+AGG 0.503568 1:+22437111 MsG0180001514.01.T01:CDS
AAAGTGAATGGAATCGAGTA+AGG 0.505018 1:-22436051 None:intergenic
CATCATCTTCTCTAAGATGT+AGG 0.507693 1:-22436988 None:intergenic
AACTCGGTGTAAAGGAATCA+TGG 0.507915 1:+22437826 MsG0180001514.01.T01:CDS
TTTGGGTGAACTCGGTGTAA+AGG 0.508652 1:+22437818 MsG0180001514.01.T01:CDS
TCCTCATCTGGTTGAACATG+TGG 0.513611 1:-22437190 None:intergenic
CTTATTGGAGCTGGGAAGAA+GGG 0.513717 1:+22437891 MsG0180001514.01.T01:CDS
GCGCAAGCTCTATCGTCTCC+AGG 0.516194 1:+22436128 MsG0180001514.01.T01:CDS
ATCTCCCAAAATTGATCAGA+TGG 0.520160 1:-22437501 None:intergenic
ACTTGAATGGAGTGTCTCAT+TGG 0.521299 1:+22437601 MsG0180001514.01.T01:CDS
CAGAGAAATCTGTGCGAGGT+AGG 0.525539 1:+22439009 MsG0180001514.01.T01:CDS
AATTCTGAATCACCATGGCC+TGG 0.526178 1:-22436146 None:intergenic
ATAGAGAAGACAATATCATC+TGG 0.531548 1:-22436815 None:intergenic
TGATGATATAAGCACGGAGG+TGG 0.531812 1:+22439041 MsG0180001514.01.T01:CDS
CTTGGTTTGATTTAAGTACC+GGG 0.533853 1:+22437949 MsG0180001514.01.T01:CDS
ACATGTGGAACAACCCATCC+TGG 0.535396 1:-22437175 None:intergenic
AGAGAAATCTGTGCGAGGTA+GGG 0.541376 1:+22439010 MsG0180001514.01.T01:CDS
TGGTTATGCTAAGCCATACA+TGG 0.543530 1:+22438810 MsG0180001514.01.T01:intron
ACCGGGATGATCGATGAGAT+TGG 0.546732 1:+22437966 MsG0180001514.01.T01:CDS
TCGATCATCTTATTGGAGCT+GGG 0.549271 1:+22437883 MsG0180001514.01.T01:CDS
TTGAATGTGTACGTAAACCT+TGG 0.554355 1:+22436873 MsG0180001514.01.T01:CDS
GCTCTATCGTCTCCAGGCCA+TGG 0.562663 1:+22436134 MsG0180001514.01.T01:CDS
ACAACCCATCCTGGTACCGC+TGG 0.568478 1:-22437166 None:intergenic
AAGACCAGCGGTACCAGGAT+GGG 0.578088 1:+22437162 MsG0180001514.01.T01:CDS
CGGTACATAGTCATGAAACA+AGG 0.578691 1:-22436914 None:intergenic
ACAAGGGTTGTCAAATAAGA+GGG 0.590344 1:-22436897 None:intergenic
AAGAATACCATTAAAACTAA+GGG 0.591923 1:-22437271 None:intergenic
TGAATGGAGTGTCTCATTGG+TGG 0.594828 1:+22437604 MsG0180001514.01.T01:CDS
ACTGAATTTGAGATCAAGCG+TGG 0.597743 1:-22438875 None:intergenic
TCATCTACATAAGAGGGTAT+GGG 0.599356 1:-22437693 None:intergenic
TATTTGATTATGTGATGACT+CGG 0.601865 1:+22439070 MsG0180001514.01.T01:CDS
TTGGCCAAAGGCTTTGACCG+AGG 0.603491 1:+22437090 MsG0180001514.01.T01:CDS
AGATGATCGAGGCAAGGTAA+GGG 0.608476 1:-22437870 None:intergenic
ACCAATCTCATCGATCATCC+CGG 0.608557 1:-22437967 None:intergenic
AAACTGTCATCTACATAAGA+GGG 0.610107 1:-22437699 None:intergenic
TTGCGCTAGAGTAGCTGAGT+CGG 0.616283 1:-22436111 None:intergenic
TCCACATGTTCAACCAGATG+AGG 0.618134 1:+22437189 MsG0180001514.01.T01:CDS
GAAGACCAGCGGTACCAGGA+TGG 0.620068 1:+22437161 MsG0180001514.01.T01:CDS
TCTTCCAAGAGTTACTGCGT+AGG 0.620101 1:-22437530 None:intergenic
GAATGGAGTGTCTCATTGGT+GGG 0.622509 1:+22437605 MsG0180001514.01.T01:CDS
ATAACCGATTTGATAATGAT+CGG 0.624831 1:-22437406 None:intergenic
GATATTTGATGATATAAGCA+CGG 0.625089 1:+22439035 MsG0180001514.01.T01:CDS
GTCTTCTCAAAACTATAGGA+CGG 0.625781 1:-22437144 None:intergenic
ACATGTTCAACCAGATGAGG+AGG 0.628529 1:+22437192 MsG0180001514.01.T01:CDS
TTGAAGTCGATAGACATCCT+CGG 0.634485 1:-22437107 None:intergenic
TTGTCAAATAAGAGGGACCA+AGG 0.634881 1:-22436890 None:intergenic
AGTCAAATTAGATTGGCCAA+AGG 0.643209 1:+22437078 MsG0180001514.01.T01:CDS
GGTGTCGTTTGACTTCTGCA+AGG 0.643769 1:+22437653 MsG0180001514.01.T01:CDS
ACTCGGAGAACCAAATTAGT+CGG 0.645310 1:+22439087 MsG0180001514.01.T01:CDS
AGTCGGACTCGAAGACAACC+CGG 0.645689 1:-22436094 None:intergenic
CCAATAAGATGATCGAGGCA+AGG 0.646718 1:-22437876 None:intergenic
TGATGTTAACAAATGGGACC+GGG 0.651060 1:+22436076 MsG0180001514.01.T01:CDS
TCGGCCGAAACATACCAAGA+AGG 0.660122 1:-22437387 None:intergenic
TGACGACGGACCATTTCAAG+AGG 0.660532 1:+22437222 MsG0180001514.01.T01:CDS
GCATAAATTCTGAATCACCA+TGG 0.663627 1:-22436151 None:intergenic
CGGAGAACCAAATTAGTCGG+TGG 0.666827 1:+22439090 MsG0180001514.01.T01:CDS
GTATCATCATAATAAGAACA+TGG 0.689910 1:-22436956 None:intergenic
GAGGAGGATGATGATGACGA+CGG 0.692169 1:+22437208 MsG0180001514.01.T01:CDS
CAGCTCCAATAAGATGATCG+AGG 0.696833 1:-22437881 None:intergenic
ATTTCAGAGAAATCTGTGCG+AGG 0.700680 1:+22439005 MsG0180001514.01.T01:CDS
GGTACATAGTCATGAAACAA+GGG 0.721899 1:-22436913 None:intergenic
GTCTTGTTAAAAGATAGTTG+CGG 0.724702 1:-22436934 None:intergenic
ATTTGATGATATAAGCACGG+AGG 0.777148 1:+22439038 MsG0180001514.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTATTATTATATATA+AGG + Chr1:22436664-22436683 MsG0180001514.01.T01:intron 0.0%
!! GGATAATAATAAAAAAAATA+TGG - Chr1:22436300-22436319 None:intergenic 10.0%
!!! TTATACCAATATTTTTTTTT+TGG - Chr1:22436484-22436503 None:intergenic 10.0%
!! AATTCTTAATATCAAAGATA+TGG - Chr1:22438160-22438179 None:intergenic 15.0%
!! ATTCTTAATATCAAAGATAT+GGG - Chr1:22438159-22438178 None:intergenic 15.0%
!! TATGATTATGTCTATTAATT+AGG + Chr1:22438096-22438115 MsG0180001514.01.T01:intron 15.0%
!!! CTTTATCAATTTTATTTTGA+AGG + Chr1:22438183-22438202 MsG0180001514.01.T01:intron 15.0%
!!! TACTCATCTTTTTTTTTTTA+GGG - Chr1:22436393-22436412 None:intergenic 15.0%
!! AAAGAATACCATTAAAACTA+AGG - Chr1:22437275-22437294 None:intergenic 20.0%
!! AACAAATGTTTAATACAAGT+AGG - Chr1:22436321-22436340 None:intergenic 20.0%
!! AAGAATACCATTAAAACTAA+GGG - Chr1:22437274-22437293 None:intergenic 20.0%
!! AATACACAATTAACTTACTT+TGG + Chr1:22438663-22438682 MsG0180001514.01.T01:intron 20.0%
!! ACTCTATTTGAAAACTTATA+TGG + Chr1:22438219-22438238 MsG0180001514.01.T01:intron 20.0%
!! AGACATAATCATATATATTG+TGG - Chr1:22438089-22438108 None:intergenic 20.0%
!! ATGTAGAAAAAGCTTATATT+TGG + Chr1:22438304-22438323 MsG0180001514.01.T01:intron 20.0%
!! CAATGATTTGAAAATTACAA+AGG + Chr1:22438588-22438607 MsG0180001514.01.T01:intron 20.0%
!! GACATAATCATATATATTGT+GGG - Chr1:22438088-22438107 None:intergenic 20.0%
!! TATTATTTGTATTCTCTTTC+TGG + Chr1:22437037-22437056 MsG0180001514.01.T01:CDS 20.0%
!! TCCTTCCAAAAAAAAAATAT+TGG + Chr1:22436476-22436495 MsG0180001514.01.T01:intron 20.0%
!! TGTAGAAAAAGCTTATATTT+GGG + Chr1:22438305-22438324 MsG0180001514.01.T01:intron 20.0%
!!! AAATGAAGAGTATTGAATTT+TGG + Chr1:22438763-22438782 MsG0180001514.01.T01:intron 20.0%
!!! AACAATTTACATTTCAGTTT+TGG + Chr1:22437800-22437819 MsG0180001514.01.T01:CDS 20.0%
!!! AAGCTTTTTCTACATAAAAT+CGG - Chr1:22438299-22438318 None:intergenic 20.0%
!!! AATGAAGAGTATTGAATTTT+GGG + Chr1:22438764-22438783 MsG0180001514.01.T01:intron 20.0%
!!! ACAATTTACATTTCAGTTTT+GGG + Chr1:22437801-22437820 MsG0180001514.01.T01:CDS 20.0%
!!! ACCAATATTTTTTTTTTGGA+AGG - Chr1:22436480-22436499 None:intergenic 20.0%
!!! CTACTCATCTTTTTTTTTTT+AGG - Chr1:22436394-22436413 None:intergenic 20.0%
! AAACGCTTCAAAGATTTAAA+AGG - Chr1:22436854-22436873 None:intergenic 25.0%
! AACAAAAGAAAGAAGAGAAA+AGG - Chr1:22436728-22436747 None:intergenic 25.0%
! AACAGAAACAAATACGTATT+TGG + Chr1:22437632-22437651 MsG0180001514.01.T01:CDS 25.0%
! AATAAAGCAAAGATTGTTTC+TGG + Chr1:22438708-22438727 MsG0180001514.01.T01:intron 25.0%
! ACAAAAGAAAGAAGAGAAAA+GGG - Chr1:22436727-22436746 None:intergenic 25.0%
! AGAATAGAGTCAAATTAGAT+TGG + Chr1:22437071-22437090 MsG0180001514.01.T01:CDS 25.0%
! AGAGACTTGATGTTATTAAA+CGG + Chr1:22437741-22437760 MsG0180001514.01.T01:CDS 25.0%
! ATACTCTTCAGAAAAAAAGA+CGG + Chr1:22437918-22437937 MsG0180001514.01.T01:CDS 25.0%
! GATAATAGTTAACTTTGCTT+TGG + Chr1:22436348-22436367 MsG0180001514.01.T01:intron 25.0%
! GTATCATCATAATAAGAACA+TGG - Chr1:22436959-22436978 None:intergenic 25.0%
! GTTATCTTTACATTCAAACT+TGG + Chr1:22436199-22436218 MsG0180001514.01.T01:intron 25.0%
! TATATATAAGGAAACATACG+TGG + Chr1:22436676-22436695 MsG0180001514.01.T01:intron 25.0%
! TATTTGATTATGTGATGACT+CGG + Chr1:22439070-22439089 MsG0180001514.01.T01:CDS 25.0%
! TTTGTATATATTCCTCCAAT+TGG - Chr1:22438047-22438066 None:intergenic 25.0%
!! GATATTTGATGATATAAGCA+CGG + Chr1:22439035-22439054 MsG0180001514.01.T01:CDS 25.0%
!!! ATAACCGATTTGATAATGAT+CGG - Chr1:22437409-22437428 None:intergenic 25.0%
AAACTGTCATCTACATAAGA+GGG - Chr1:22437702-22437721 None:intergenic 30.0%
ACTTTGCTGATGTTAACAAA+TGG + Chr1:22436069-22436088 MsG0180001514.01.T01:CDS 30.0%
ATACCAAGAAGGATTATTCT+CGG - Chr1:22437379-22437398 None:intergenic 30.0%
ATAGAGAAGACAATATCATC+TGG - Chr1:22436818-22436837 None:intergenic 30.0%
ATCTTTACATTCAAACTTGG+AGG + Chr1:22436202-22436221 MsG0180001514.01.T01:intron 30.0%
CTTTGCTGATGTTAACAAAT+GGG + Chr1:22436070-22436089 MsG0180001514.01.T01:CDS 30.0%
TAATCCTTCTTGGTATGTTT+CGG + Chr1:22437383-22437402 MsG0180001514.01.T01:CDS 30.0%
TGCAGTTGCTAAAATCAATT+TGG + Chr1:22438633-22438652 MsG0180001514.01.T01:intron 30.0%
TTAATAACATCAAGTCTCTC+TGG - Chr1:22437740-22437759 None:intergenic 30.0%
! ACACGATTAGGGTTAAATTT+TGG - Chr1:22437480-22437499 None:intergenic 30.0%
! AGTTAGGAAAAATTGCTGTT+GGG + Chr1:22438833-22438852 MsG0180001514.01.T01:CDS 30.0%
! ATTTTTCCTAACTCCATGTA+TGG - Chr1:22438826-22438845 None:intergenic 30.0%
! CTTTTTCTACATAAAATCGG+AGG - Chr1:22438296-22438315 None:intergenic 30.0%
! GTCTTGTTAAAAGATAGTTG+CGG - Chr1:22436937-22436956 None:intergenic 30.0%
!! AGTATTGAATTTTGGGTATG+TGG + Chr1:22438771-22438790 MsG0180001514.01.T01:intron 30.0%
!! CAGATTTCTCTGAAATTTCT+TGG - Chr1:22439001-22439020 None:intergenic 30.0%
!! CTTCTTTCTTTTGTTTCAGA+TGG + Chr1:22436733-22436752 MsG0180001514.01.T01:intron 30.0%
!!! TGACAGTTTGGATTTTAACT+TGG + Chr1:22437713-22437732 MsG0180001514.01.T01:CDS 30.0%
!!! TTCACATCCCTTAGTTTTAA+TGG + Chr1:22437264-22437283 MsG0180001514.01.T01:CDS 30.0%
AAAGAAAGCCTTCTTCCAAT+TGG + Chr1:22438029-22438048 MsG0180001514.01.T01:intron 35.0%
AAAGTGAATGGAATCGAGTA+AGG - Chr1:22436054-22436073 None:intergenic 35.0%
AACAAGGGTTGTCAAATAAG+AGG - Chr1:22436901-22436920 None:intergenic 35.0%
ACAAGGGTTGTCAAATAAGA+GGG - Chr1:22436900-22436919 None:intergenic 35.0%
AGGAATGAGTTTGAATTCGT+TGG - Chr1:22437352-22437371 None:intergenic 35.0%
ATATTCCTCCAATTGGAAGA+AGG - Chr1:22438040-22438059 None:intergenic 35.0%
ATCTCCCAAAATTGATCAGA+TGG - Chr1:22437504-22437523 None:intergenic 35.0%
ATGCATGCAAATATGCTACT+TGG + Chr1:22438489-22438508 MsG0180001514.01.T01:intron 35.0%
CAAACTGTCATCTACATAAG+AGG - Chr1:22437703-22437722 None:intergenic 35.0%
CGATTACGAATCGAAAAAGA+AGG - Chr1:22437576-22437595 None:intergenic 35.0%
CTCTTATGTAGATGACAGTT+TGG + Chr1:22437701-22437720 MsG0180001514.01.T01:CDS 35.0%
GAGTTAGGAAAAATTGCTGT+TGG + Chr1:22438832-22438851 MsG0180001514.01.T01:CDS 35.0%
GCATAAATTCTGAATCACCA+TGG - Chr1:22436154-22436173 None:intergenic 35.0%
GGTACATAGTCATGAAACAA+GGG - Chr1:22436916-22436935 None:intergenic 35.0%
GGTATTCTTTGTCTAAAAGC+TGG + Chr1:22437285-22437304 MsG0180001514.01.T01:intron 35.0%
GGTTGCTCATACTTTAACTA+AGG + Chr1:22436253-22436272 MsG0180001514.01.T01:intron 35.0%
GTCTTCTCAAAACTATAGGA+CGG - Chr1:22437147-22437166 None:intergenic 35.0%
GTTAACATCAGCAAAGTGAA+TGG - Chr1:22436066-22436085 None:intergenic 35.0%
TACCAAGAAGGATTATTCTC+GGG - Chr1:22437378-22437397 None:intergenic 35.0%
TATGGCATTAGCTCAATAAC+AGG - Chr1:22436282-22436301 None:intergenic 35.0%
TGCTCATACTTTAACTAAGG+CGG + Chr1:22436256-22436275 MsG0180001514.01.T01:intron 35.0%
TGTCTAAAAGCTGGATTCTA+CGG + Chr1:22437294-22437313 MsG0180001514.01.T01:intron 35.0%
TTGAATGTGTACGTAAACCT+TGG + Chr1:22436873-22436892 MsG0180001514.01.T01:CDS 35.0%
TTTGTTGCTCATCTTGTTGA+TGG + Chr1:22438952-22438971 MsG0180001514.01.T01:CDS 35.0%
! AGTCAAATTAGATTGGCCAA+AGG + Chr1:22437078-22437097 MsG0180001514.01.T01:CDS 35.0%
! ATTTGATGATATAAGCACGG+AGG + Chr1:22439038-22439057 MsG0180001514.01.T01:CDS 35.0%
! ATTTTGCCCAGTACACAAAA+TGG + Chr1:22438119-22438138 MsG0180001514.01.T01:intron 35.0%
! CTGGTAAAGAGTTGATTGTT+CGG + Chr1:22438727-22438746 MsG0180001514.01.T01:intron 35.0%
! CTTGGTTTGATTTAAGTACC+GGG + Chr1:22437949-22437968 MsG0180001514.01.T01:CDS 35.0%
! GCTTGGTTTGATTTAAGTAC+CGG + Chr1:22437948-22437967 MsG0180001514.01.T01:CDS 35.0%
! TCATCTACATAAGAGGGTAT+GGG - Chr1:22437696-22437715 None:intergenic 35.0%
! TGGTAAAGAGTTGATTGTTC+GGG + Chr1:22438728-22438747 MsG0180001514.01.T01:intron 35.0%
! TGTGCCATCTGATCAATTTT+GGG + Chr1:22437497-22437516 MsG0180001514.01.T01:CDS 35.0%
!! CATCATCTTCTCTAAGATGT+AGG - Chr1:22436991-22437010 None:intergenic 35.0%
!! GTGGTCTTGTCTTGTTTATA+TGG + Chr1:22438790-22438809 MsG0180001514.01.T01:intron 35.0%
!!! ATTTCAGTTTTGGGTGAACT+CGG + Chr1:22437810-22437829 MsG0180001514.01.T01:CDS 35.0%
!!! TATAGTTTTGAGAAGACCAG+CGG + Chr1:22437150-22437169 MsG0180001514.01.T01:CDS 35.0%
AAAAAGACGGTGAACTAGCT+TGG + Chr1:22437931-22437950 MsG0180001514.01.T01:CDS 40.0%
AAATTTGGCGTCTCTCTTGT+GGG - Chr1:22437015-22437034 None:intergenic 40.0%
AACGAAGAAATGTTGCTCAC+TGG - Chr1:22438403-22438422 None:intergenic 40.0%
ACTCGGAGAACCAAATTAGT+CGG + Chr1:22439087-22439106 MsG0180001514.01.T01:CDS 40.0%
ATTTCAGAGAAATCTGTGCG+AGG + Chr1:22439005-22439024 MsG0180001514.01.T01:CDS 40.0%
CCATCATCATCCTCTTGAAA+TGG - Chr1:22437235-22437254 None:intergenic 40.0%
CCATTTCAAGAGGATGATGA+TGG + Chr1:22437232-22437251 MsG0180001514.01.T01:CDS 40.0%
CGGTACATAGTCATGAAACA+AGG - Chr1:22436917-22436936 None:intergenic 40.0%
CGTAATCGAGTGTACTTGAA+TGG + Chr1:22437588-22437607 MsG0180001514.01.T01:CDS 40.0%
CTGAACAACATTTGACGATG+CGG - Chr1:22436777-22436796 None:intergenic 40.0%
CTGATGTTAACAAATGGGAC+CGG + Chr1:22436075-22436094 MsG0180001514.01.T01:CDS 40.0%
GATGAAGATATGTTGCTCAC+TGG - Chr1:22438343-22438362 None:intergenic 40.0%
GTCATCTACATAAGAGGGTA+TGG - Chr1:22437697-22437716 None:intergenic 40.0%
TAAATTTGGCGTCTCTCTTG+TGG - Chr1:22437016-22437035 None:intergenic 40.0%
TCGATCATCTTATTGGAGCT+GGG + Chr1:22437883-22437902 MsG0180001514.01.T01:CDS 40.0%
TCGGCCGATCATTATCAAAT+CGG + Chr1:22437402-22437421 MsG0180001514.01.T01:CDS 40.0%
TGATGTTAACAAATGGGACC+GGG + Chr1:22436076-22436095 MsG0180001514.01.T01:CDS 40.0%
TGGTTATGCTAAGCCATACA+TGG + Chr1:22438810-22438829 MsG0180001514.01.T01:intron 40.0%
TTGAAGTCGATAGACATCCT+CGG - Chr1:22437110-22437129 None:intergenic 40.0%
TTGGAAGAAGGCTTTCTTTG+TGG - Chr1:22438028-22438047 None:intergenic 40.0%
TTGTCAAATAAGAGGGACCA+AGG - Chr1:22436893-22436912 None:intergenic 40.0%
! AAAGAGTTGATTGTTCGGGA+AGG + Chr1:22438732-22438751 MsG0180001514.01.T01:intron 40.0%
! AAGCCACCATTTTGTGTACT+GGG - Chr1:22438128-22438147 None:intergenic 40.0%
! ACTGAATTTGAGATCAAGCG+TGG - Chr1:22438878-22438897 None:intergenic 40.0%
! ACTTGAATGGAGTGTCTCAT+TGG + Chr1:22437601-22437620 MsG0180001514.01.T01:CDS 40.0%
! GTGTGCCATCTGATCAATTT+TGG + Chr1:22437496-22437515 MsG0180001514.01.T01:CDS 40.0%
! TGGACTAAGCACTTCGTTTT+TGG + Chr1:22437846-22437865 MsG0180001514.01.T01:CDS 40.0%
! TGTATTCTCTTTCTGGTGAG+AGG + Chr1:22437044-22437063 MsG0180001514.01.T01:CDS 40.0%
! TTGAAAGCCACCGACTAATT+TGG - Chr1:22439100-22439119 None:intergenic 40.0%
!! AACTCGGTGTAAAGGAATCA+TGG + Chr1:22437826-22437845 MsG0180001514.01.T01:CDS 40.0%
!! GCTGGTCTTCTCAAAACTAT+AGG - Chr1:22437151-22437170 None:intergenic 40.0%
!! GGATGTCTATCGACTTCAAA+AGG + Chr1:22437111-22437130 MsG0180001514.01.T01:CDS 40.0%
AAGATGATCGAGGCAAGGTA+AGG - Chr1:22437874-22437893 None:intergenic 45.0%
AATTCTGAATCACCATGGCC+TGG - Chr1:22436149-22436168 None:intergenic 45.0%
ACATGTTCAACCAGATGAGG+AGG + Chr1:22437192-22437211 MsG0180001514.01.T01:CDS 45.0%
ACCAATCTCATCGATCATCC+CGG - Chr1:22437970-22437989 None:intergenic 45.0%
ACTTGGAGGTGAAGTTTGTC+AGG + Chr1:22436216-22436235 MsG0180001514.01.T01:intron 45.0%
AGAGAAATCTGTGCGAGGTA+GGG + Chr1:22439010-22439029 MsG0180001514.01.T01:CDS 45.0%
AGATGATCGAGGCAAGGTAA+GGG - Chr1:22437873-22437892 None:intergenic 45.0%
ATAGCCTACGCAGTAACTCT+TGG + Chr1:22437526-22437545 MsG0180001514.01.T01:CDS 45.0%
CAGCTCCAATAAGATGATCG+AGG - Chr1:22437884-22437903 None:intergenic 45.0%
CCAATAAGATGATCGAGGCA+AGG - Chr1:22437879-22437898 None:intergenic 45.0%
CCTTGCCTCGATCATCTTAT+TGG + Chr1:22437876-22437895 MsG0180001514.01.T01:CDS 45.0%
CGCATCGTCAAATGTTGTTC+AGG + Chr1:22436775-22436794 MsG0180001514.01.T01:intron 45.0%
CTCGATCATCTTATTGGAGC+TGG + Chr1:22437882-22437901 MsG0180001514.01.T01:CDS 45.0%
CTTATTGGAGCTGGGAAGAA+GGG + Chr1:22437891-22437910 MsG0180001514.01.T01:CDS 45.0%
GAAAGCCTTCTTCCAATTGG+AGG + Chr1:22438032-22438051 MsG0180001514.01.T01:intron 45.0%
GAAGGATTATTCTCGGGCAA+AGG - Chr1:22437372-22437391 None:intergenic 45.0%
GATCAGATGGCACACGATTA+GGG - Chr1:22437491-22437510 None:intergenic 45.0%
GCGAAACGAGAGTTGTATTG+TGG + Chr1:22437316-22437335 MsG0180001514.01.T01:intron 45.0%
GCTAAGCCATACATGGAGTT+AGG + Chr1:22438817-22438836 MsG0180001514.01.T01:intron 45.0%
TCATCATCATCCTCCTCATC+TGG - Chr1:22437205-22437224 None:intergenic 45.0%
TCCACATGTTCAACCAGATG+AGG + Chr1:22437189-22437208 MsG0180001514.01.T01:CDS 45.0%
TCCTCATCTGGTTGAACATG+TGG - Chr1:22437193-22437212 None:intergenic 45.0%
TCTTATTGGAGCTGGGAAGA+AGG + Chr1:22437890-22437909 MsG0180001514.01.T01:CDS 45.0%
TCTTCCAAGAGTTACTGCGT+AGG - Chr1:22437533-22437552 None:intergenic 45.0%
TGATCAGATGGCACACGATT+AGG - Chr1:22437492-22437511 None:intergenic 45.0%
TGATGATATAAGCACGGAGG+TGG + Chr1:22439041-22439060 MsG0180001514.01.T01:CDS 45.0%
TGCCCGAGAATAATCCTTCT+TGG + Chr1:22437373-22437392 MsG0180001514.01.T01:intron 45.0%
TGTCAGGAGACAAACGAACA+TGG + Chr1:22436232-22436251 MsG0180001514.01.T01:intron 45.0%
TTGCCCAGTACACAAAATGG+TGG + Chr1:22438122-22438141 MsG0180001514.01.T01:intron 45.0%
! CAAGCCACCATTTTGTGTAC+TGG - Chr1:22438129-22438148 None:intergenic 45.0%
! GAATGGAGTGTCTCATTGGT+GGG + Chr1:22437605-22437624 MsG0180001514.01.T01:CDS 45.0%
! GATTGTTCGGGAAGGTGTAA+AGG + Chr1:22438740-22438759 MsG0180001514.01.T01:intron 45.0%
! TGAATGGAGTGTCTCATTGG+TGG + Chr1:22437604-22437623 MsG0180001514.01.T01:CDS 45.0%
!! TTTGGGTGAACTCGGTGTAA+AGG + Chr1:22437818-22437837 MsG0180001514.01.T01:CDS 45.0%
!! AATACAAATAATAATAAATT+TGG - Chr1:22437030-22437049 None:intergenic 5.0%
!! TATATAAATAATATAGTATT+GGG + Chr1:22436578-22436597 MsG0180001514.01.T01:intron 5.0%
!! TTATATAAATAATATAGTAT+TGG + Chr1:22436577-22436596 MsG0180001514.01.T01:intron 5.0%
ACATCCTCGGTCAAAGCCTT+TGG - Chr1:22437097-22437116 None:intergenic 50.0%
ACATGTGGAACAACCCATCC+TGG - Chr1:22437178-22437197 None:intergenic 50.0%
ACCGGGATGATCGATGAGAT+TGG + Chr1:22437966-22437985 MsG0180001514.01.T01:CDS 50.0%
CAGAGAAATCTGTGCGAGGT+AGG + Chr1:22439009-22439028 MsG0180001514.01.T01:CDS 50.0%
CGGAGAACCAAATTAGTCGG+TGG + Chr1:22439090-22439109 MsG0180001514.01.T01:CDS 50.0%
TCGGCCGAAACATACCAAGA+AGG - Chr1:22437390-22437409 None:intergenic 50.0%
TGACGACGGACCATTTCAAG+AGG + Chr1:22437222-22437241 MsG0180001514.01.T01:CDS 50.0%
TTGCGCTAGAGTAGCTGAGT+CGG - Chr1:22436114-22436133 None:intergenic 50.0%
! GAGGAGGATGATGATGACGA+CGG + Chr1:22437208-22437227 MsG0180001514.01.T01:CDS 50.0%
!! GGTGTCGTTTGACTTCTGCA+AGG + Chr1:22437653-22437672 MsG0180001514.01.T01:CDS 50.0%
AAGACCAGCGGTACCAGGAT+GGG + Chr1:22437162-22437181 MsG0180001514.01.T01:CDS 55.0%
AGTCGGACTCGAAGACAACC+CGG - Chr1:22436097-22436116 None:intergenic 55.0%
TTGAGAAGACCAGCGGTACC+AGG + Chr1:22437157-22437176 MsG0180001514.01.T01:CDS 55.0%
! TTGGCCAAAGGCTTTGACCG+AGG + Chr1:22437090-22437109 MsG0180001514.01.T01:CDS 55.0%
ACAACCCATCCTGGTACCGC+TGG - Chr1:22437169-22437188 None:intergenic 60.0%
GAAGACCAGCGGTACCAGGA+TGG + Chr1:22437161-22437180 MsG0180001514.01.T01:CDS 60.0%
GCGCAAGCTCTATCGTCTCC+AGG + Chr1:22436128-22436147 MsG0180001514.01.T01:CDS 60.0%
GCTCTATCGTCTCCAGGCCA+TGG + Chr1:22436134-22436153 MsG0180001514.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 22436023 22439140 22436023 ID=MsG0180001514.01;Name=MsG0180001514.01
Chr1 mRNA 22436023 22439140 22436023 ID=MsG0180001514.01.T01;Parent=MsG0180001514.01;Name=MsG0180001514.01.T01;_AED=0.50;_eAED=0.51;_QI=0|0|0|0.75|1|1|4|0|525
Chr1 exon 22436023 22436184 22436023 ID=MsG0180001514.01.T01:exon:423;Parent=MsG0180001514.01.T01
Chr1 exon 22436797 22437285 22436797 ID=MsG0180001514.01.T01:exon:422;Parent=MsG0180001514.01.T01
Chr1 exon 22437381 22437989 22437381 ID=MsG0180001514.01.T01:exon:421;Parent=MsG0180001514.01.T01
Chr1 exon 22438823 22439140 22438823 ID=MsG0180001514.01.T01:exon:420;Parent=MsG0180001514.01.T01
Chr1 CDS 22436023 22436184 22436023 ID=MsG0180001514.01.T01:cds;Parent=MsG0180001514.01.T01
Chr1 CDS 22436797 22437285 22436797 ID=MsG0180001514.01.T01:cds;Parent=MsG0180001514.01.T01
Chr1 CDS 22437381 22437989 22437381 ID=MsG0180001514.01.T01:cds;Parent=MsG0180001514.01.T01
Chr1 CDS 22438823 22439140 22438823 ID=MsG0180001514.01.T01:cds;Parent=MsG0180001514.01.T01
Gene Sequence

>MsG0180001514.01.T01

ATGACAGTTTTGGAGGAGGAGGCAGTAACCTTACTCGATTCCATTCACTTTGCTGATGTTAACAAATGGGACCGGGTTGTCTTCGAGTCCGACTCAGCTACTCTAGCGCAAGCTCTATCGTCTCCAGGCCATGGTGATTCAGAATTTATGCTATTGTTTCTAGTTAGCAGTAATCATATACCAGATGATATTGTCTTCTCTATTCTCTCTAAACTTCCTTTTAAATCTTTGAAGCGTTTTGAATGTGTACGTAAACCTTGGTCCCTCTTATTTGACAACCCTTGTTTCATGACTATGTACCGCAACTATCTTTTAACAAGACCATGTTCTTATTATGATGATACATCTCTTCTCCTACATCTTAGAGAAGATGATGACCCACAAGAGAGACGCCAAATTTATTATTATTTGTATTCTCTTTCTGGTGAGAGGTTTGAGAATAGAGTCAAATTAGATTGGCCAAAGGCTTTGACCGAGGATGTCTATCGACTTCAAAAGGAACAGTGTGTCCGTCCTATAGTTTTGAGAAGACCAGCGGTACCAGGATGGGTTGTTCCACATGTTCAACCAGATGAGGAGGATGATGATGACGACGGACCATTTCAAGAGGATGATGATGGTTTTGAAATTTCACATCCCTTAGTTTTAATGAATAATCCTTCTTGGTATGTTTCGGCCGATCATTATCAAATCGGTTATGATCATGTTAAAGATGATTATAAGATGATTCGCTGCACATATTATTCTCCAAAATTTAACCCTAATCGTGTGCCATCTGATCAATTTTGGGAGATCTATAGCCTACGCAGTAACTCTTGGAAGAAAATTAATGTCGACATGACTCCTTCTTTTTCGATTCGTAATCGAGTGTACTTGAATGGAGTGTCTCATTGGTGGGATAAAACAGAAACAAATACGTATTTGGTGTCGTTTGACTTCTGCAAGGAATCTTTTATTACAACACCCATACCCTCTTATGTAGATGACAGTTTGGATTTTAACTTGGTCCAGAGAGACTTGATGTTATTAAACGGATTTGTTGCTTTTATGTTACATTATACAGAGACATCAACAATTTACATTTCAGTTTTGGGTGAACTCGGTGTAAAGGAATCATGGACTAAGCACTTCGTTTTTGGTCCCTTACCTTGCCTCGATCATCTTATTGGAGCTGGGAAGAAGGGCAATATACTCTTCAGAAAAAAAGACGGTGAACTAGCTTGGTTTGATTTAAGTACCGGGATGATCGATGAGATTGGTCCATACATGGAGTTAGGAAAAATTGCTGTTGGGTGTGAAAATTCTATAGTTTCCACGCTTGATCTCAAATTCAGTGAAAAGCTAACGAAGAAAATGCAATGCTTTAGTGAGATCAAAGAGATGAACAATTTTGTTGCTCATCTTGTTGATGGTGATGAAGTAAGAGATGATACTACCAAGAAATTTCAGAGAAATCTGTGCGAGGTAGGGAAGATATTTGATGATATAAGCACGGAGGTGGATCATCTATTTGATTATGTGATGACTCGGAGAACCAAATTAGTCGGTGGCTTTCAACTTAAGAAACAACAACAATAA
Protein sequence

>MsG0180001514.01.T01

MTVLEEEAVTLLDSIHFADVNKWDRVVFESDSATLAQALSSPGHGDSEFMLLFLVSSNHIPDDIVFSILSKLPFKSLKRFECVRKPWSLLFDNPCFMTMYRNYLLTRPCSYYDDTSLLLHLREDDDPQERRQIYYYLYSLSGERFENRVKLDWPKALTEDVYRLQKEQCVRPIVLRRPAVPGWVVPHVQPDEEDDDDDGPFQEDDDGFEISHPLVLMNNPSWYVSADHYQIGYDHVKDDYKMIRCTYYSPKFNPNRVPSDQFWEIYSLRSNSWKKINVDMTPSFSIRNRVYLNGVSHWWDKTETNTYLVSFDFCKESFITTPIPSYVDDSLDFNLVQRDLMLLNGFVAFMLHYTETSTIYISVLGELGVKESWTKHFVFGPLPCLDHLIGAGKKGNILFRKKDGELAWFDLSTGMIDEIGPYMELGKIAVGCENSIVSTLDLKFSEKLTKKMQCFSEIKEMNNFVAHLVDGDEVRDDTTKKFQRNLCEVGKIFDDISTEVDHLFDYVMTRRTKLVGGFQLKKQQQ*