AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016500.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016500.01.T01 MTR_5g091140 40.253 395 136 11 1 318 31 402 2.56e-78 245
MsG0380016500.01.T01 MTR_4g102410 38.308 402 167 7 6 329 48 446 5.60e-78 245
MsG0380016500.01.T01 MTR_5g096630 36.983 411 176 8 1 329 1 410 1.77e-72 230
MsG0380016500.01.T01 MTR_8g063440 32.905 389 180 11 10 329 3 379 7.46e-55 184
MsG0380016500.01.T01 MTR_4g117550 33.421 380 179 12 5 326 3 366 1.52e-50 172
MsG0380016500.01.T01 MTR_2g038680 33.253 415 168 15 10 329 7 407 9.30e-50 171
MsG0380016500.01.T01 MTR_2g021800 32.850 414 185 16 5 329 3 412 1.52e-43 155
MsG0380016500.01.T01 MTR_0129s0120 30.570 386 191 9 11 325 9 388 3.86e-43 153
MsG0380016500.01.T01 MTR_2g021770 32.412 398 172 14 23 331 16 405 8.53e-43 152
MsG0380016500.01.T01 MTR_8g464770 32.800 375 176 11 14 323 7 370 2.58e-42 150
MsG0380016500.01.T01 MTR_2g065840 31.818 396 181 15 10 329 3 385 4.96e-42 150
MsG0380016500.01.T01 MTR_2g022000 31.298 393 181 11 4 308 1 392 4.97e-42 151
MsG0380016500.01.T01 MTR_0129s0070 31.429 385 185 11 13 325 11 388 5.38e-42 150
MsG0380016500.01.T01 MTR_8g467670 30.491 387 184 13 11 329 6 375 2.02e-41 149
MsG0380016500.01.T01 MTR_2g066170 30.052 386 192 12 10 326 3 379 3.40e-41 148
MsG0380016500.01.T01 MTR_2g066200 30.102 392 192 13 10 329 3 384 3.84e-41 148
MsG0380016500.01.T01 MTR_5g097330 32.405 395 170 14 7 317 4 385 6.21e-41 147
MsG0380016500.01.T01 MTR_4g014370 33.803 355 166 15 8 331 11 327 7.45e-41 146
MsG0380016500.01.T01 MTR_1g007410 30.958 407 189 14 4 329 7 402 9.63e-41 147
MsG0380016500.01.T01 MTR_8g041270 31.514 403 181 13 13 329 9 402 1.34e-39 144
MsG0380016500.01.T01 MTR_2g065860 31.043 393 187 12 10 329 3 384 3.60e-39 142
MsG0380016500.01.T01 MTR_7g017130 32.331 399 179 13 5 325 4 389 8.28e-39 142
MsG0380016500.01.T01 MTR_4g055820 34.385 317 152 12 13 277 8 320 1.18e-38 140
MsG0380016500.01.T01 MTR_7g079640 32.493 357 158 13 18 308 12 351 4.09e-38 139
MsG0380016500.01.T01 MTR_3g011120 31.367 373 176 13 16 322 11 369 9.57e-38 138
MsG0380016500.01.T01 MTR_2g104340 31.250 400 183 17 10 329 5 392 1.22e-37 139
MsG0380016500.01.T01 MTR_7g104710 37.201 293 143 11 1 267 1 278 2.38e-37 136
MsG0380016500.01.T01 MTR_7g017170 32.461 382 167 13 5 308 4 372 4.94e-37 137
MsG0380016500.01.T01 MTR_0129s0050 30.637 408 185 11 11 329 6 404 6.03e-37 137
MsG0380016500.01.T01 MTR_4g130330 30.964 394 186 11 14 329 2 387 6.69e-37 137
MsG0380016500.01.T01 MTR_4g028660 29.310 406 190 12 4 326 1 392 9.38e-37 136
MsG0380016500.01.T01 MTR_4g027450 29.310 406 190 12 4 326 1 392 9.38e-37 136
MsG0380016500.01.T01 MTR_4g028510 32.274 409 183 16 4 329 1 398 1.13e-36 137
MsG0380016500.01.T01 MTR_7g017040 31.830 399 182 11 10 329 7 394 1.21e-36 136
MsG0380016500.01.T01 MTR_6g080680 31.920 401 179 16 1 323 1 385 1.65e-36 135
MsG0380016500.01.T01 MTR_8g039500 31.389 360 164 12 10 302 3 346 4.49e-36 133
MsG0380016500.01.T01 MTR_1g007450 29.973 377 184 10 11 312 4 375 1.30e-35 134
MsG0380016500.01.T01 MTR_5g037680 30.233 387 184 12 14 325 3 378 1.31e-35 134
MsG0380016500.01.T01 MTR_8g012090 31.909 351 170 12 4 302 1 334 1.82e-35 131
MsG0380016500.01.T01 MTR_6g086825 31.328 399 187 11 10 325 58 452 3.89e-35 133
MsG0380016500.01.T01 MTR_2g104280 30.348 402 185 13 14 329 9 401 4.43e-35 132
MsG0380016500.01.T01 MTR_5g097350 30.653 398 189 14 4 329 1 383 4.97e-35 131
MsG0380016500.01.T01 MTR_5g096910 30.127 395 192 9 8 329 6 389 2.86e-34 129
MsG0380016500.01.T01 MTR_2g021950 28.117 377 196 8 4 308 1 374 8.60e-34 128
MsG0380016500.01.T01 MTR_2g066150 30.239 377 181 12 11 329 4 356 3.56e-33 126
MsG0380016500.01.T01 MTR_6g461660 30.597 402 184 12 9 329 9 396 4.67e-33 126
MsG0380016500.01.T01 MTR_8g036970 33.228 316 166 13 27 314 6 304 5.74e-33 125
MsG0380016500.01.T01 MTR_4g028680 29.455 404 199 12 4 329 1 396 9.84e-33 125
MsG0380016500.01.T01 MTR_5g024260 30.667 375 170 14 13 307 16 380 1.43e-32 125
MsG0380016500.01.T01 MTR_4g028750 29.487 390 179 15 4 311 1 376 1.53e-32 125
MsG0380016500.01.T01 MTR_5g069390 28.609 381 177 16 13 307 20 391 1.65e-32 126
MsG0380016500.01.T01 MTR_7g069550 30.709 381 166 14 13 308 8 375 2.08e-32 124
MsG0380016500.01.T01 MTR_5g092860 33.431 341 146 17 37 308 20 348 4.39e-32 123
MsG0380016500.01.T01 MTR_2g034700 29.974 387 179 14 13 329 8 372 5.23e-32 123
MsG0380016500.01.T01 MTR_7g016930 34.426 305 160 10 4 279 1 294 6.29e-32 122
MsG0380016500.01.T01 MTR_8g064890 28.061 392 190 10 13 329 10 384 1.19e-30 120
MsG0380016500.01.T01 MTR_2g064950 30.189 371 173 11 13 307 4 364 5.23e-30 118
MsG0380016500.01.T01 MTR_6g478230 29.688 384 194 10 13 325 21 399 7.55e-30 118
MsG0380016500.01.T01 MTR_8g064790 30.000 350 189 12 12 329 8 333 5.37e-29 114
MsG0380016500.01.T01 MTR_1g053510 28.398 412 183 15 10 326 5 399 1.00e-28 115
MsG0380016500.01.T01 MTR_8g013000 31.699 306 150 8 13 267 4 301 5.74e-27 110
MsG0380016500.01.T01 MTR_1g098180 27.851 377 177 13 16 328 16 361 3.25e-26 107
MsG0380016500.01.T01 MTR_1g007430 33.673 294 132 10 30 277 7 283 8.30e-26 105
MsG0380016500.01.T01 MTR_8g046310 28.272 382 195 18 7 323 1 368 3.13e-24 102
MsG0380016500.01.T01 MTR_0831s0010 27.034 381 201 14 16 329 47 417 4.37e-24 102
MsG0380016500.01.T01 MTR_8g063330 28.981 314 157 13 16 277 11 310 4.67e-24 102
MsG0380016500.01.T01 MTR_5g094350 31.387 274 135 9 16 244 10 275 5.60e-24 99.8
MsG0380016500.01.T01 MTR_7g111700 27.907 387 185 14 8 329 4 361 7.22e-24 100
MsG0380016500.01.T01 MTR_5g022850 29.787 376 167 15 14 329 11 349 2.78e-23 99.0
MsG0380016500.01.T01 MTR_8g073570 43.220 118 65 1 11 128 2 117 3.73e-23 94.7
MsG0380016500.01.T01 MTR_1g050308 32.444 225 114 7 1 190 16 237 1.01e-22 97.4
MsG0380016500.01.T01 MTR_5g072060 29.600 375 150 16 17 308 4 347 1.49e-22 99.0
MsG0380016500.01.T01 MTR_5g043605 26.630 368 154 13 16 325 22 331 1.60e-22 97.1
MsG0380016500.01.T01 MTR_4g007940 27.299 348 157 13 69 331 6 342 1.86e-22 96.7
MsG0380016500.01.T01 MTR_1g115205 33.468 248 105 12 1 214 17 238 2.28e-22 94.7
MsG0380016500.01.T01 MTR_5g092850 26.781 407 180 17 18 329 15 398 6.71e-22 95.9
MsG0380016500.01.T01 MTR_0054s0100 31.837 245 114 8 113 329 185 404 7.23e-22 95.9
MsG0380016500.01.T01 MTR_0054s0100 44.660 103 49 2 8 106 6 104 5.50e-14 72.8
MsG0380016500.01.T01 MTR_6g090180 33.333 186 92 4 172 329 253 434 7.79e-22 95.9
MsG0380016500.01.T01 MTR_6g090180 41.667 120 65 3 10 127 38 154 7.78e-16 78.2
MsG0380016500.01.T01 MTR_1g076810 33.871 248 115 13 1 206 1 241 8.32e-22 96.7
MsG0380016500.01.T01 MTR_0134s0060 44.186 129 64 2 9 133 2 126 1.03e-21 95.5
MsG0380016500.01.T01 MTR_0134s0060 32.773 238 112 11 119 323 180 402 1.25e-20 92.4
MsG0380016500.01.T01 MTR_6g004450 35.106 188 82 6 172 329 88 265 1.29e-21 92.8
MsG0380016500.01.T01 MTR_0054s0090 31.020 245 116 7 113 329 183 402 1.67e-21 94.7
MsG0380016500.01.T01 MTR_0054s0090 46.535 101 46 2 10 106 8 104 2.78e-14 73.6
MsG0380016500.01.T01 MTR_5g097540 32.616 279 101 12 49 289 3 232 1.78e-21 93.2
MsG0380016500.01.T01 MTR_5g076490 33.198 247 114 11 62 267 7 243 1.87e-21 93.6
MsG0380016500.01.T01 MTR_6g078010 27.711 332 173 9 55 326 4 328 1.98e-21 94.0
MsG0380016500.01.T01 MTR_8g033140 24.877 406 198 15 4 312 1 396 3.08e-21 94.0
MsG0380016500.01.T01 MTR_6g465360 41.860 129 67 2 9 133 52 176 4.82e-21 91.7
MsG0380016500.01.T01 MTR_5g037190 32.342 269 121 7 4 230 1 250 1.08e-20 90.1
MsG0380016500.01.T01 MTR_6g079770 49.558 113 49 3 5 113 3 111 5.44e-20 90.5
MsG0380016500.01.T01 MTR_6g079770 34.973 183 84 7 172 323 229 407 9.56e-20 89.7
MsG0380016500.01.T01 MTR_5g096900 51.485 101 41 2 12 109 5 100 4.83e-19 86.7
MsG0380016500.01.T01 MTR_4g014370 41.270 126 65 4 9 128 1 123 1.54e-18 86.3
MsG0380016500.01.T01 MTR_4g014370 30.864 243 105 11 113 331 196 399 1.28e-14 74.7
MsG0380016500.01.T01 MTR_5g059430 32.432 185 88 7 172 323 236 416 5.81e-18 84.7
MsG0380016500.01.T01 MTR_5g059430 40.187 107 53 2 13 108 20 126 7.52e-15 75.5
MsG0380016500.01.T01 MTR_5g023970 34.104 173 73 6 172 312 11 174 1.37e-17 80.1
MsG0380016500.01.T01 MTR_6g079810 31.020 245 109 9 113 323 235 453 1.45e-17 83.6
MsG0380016500.01.T01 MTR_6g079810 42.991 107 52 2 8 111 59 159 1.40e-13 71.6
MsG0380016500.01.T01 MTR_5g097820 40.171 117 57 4 1 108 1 113 1.78e-17 81.3
MsG0380016500.01.T01 MTR_5g097220 30.366 191 92 8 172 329 222 404 3.01e-17 82.4
MsG0380016500.01.T01 MTR_5g097220 44.898 98 43 3 14 108 8 97 1.13e-12 68.6
MsG0380016500.01.T01 MTR_5g086590 32.584 178 78 7 164 308 70 238 7.62e-17 79.0
MsG0380016500.01.T01 MTR_7g101200 27.660 282 129 9 33 291 1 230 8.74e-17 79.0
MsG0380016500.01.T01 MTR_6g070880 42.056 107 53 2 14 116 27 128 1.19e-16 79.0
MsG0380016500.01.T01 MTR_6g071420 42.056 107 53 2 14 116 27 128 1.19e-16 79.0
MsG0380016500.01.T01 MTR_6g090250 29.469 207 103 5 158 326 216 417 3.59e-15 76.3
MsG0380016500.01.T01 MTR_8g046220 26.582 395 195 18 17 326 15 399 4.38e-15 75.9
MsG0380016500.01.T01 MTR_5g074800 26.316 342 125 14 64 308 9 320 5.49e-15 75.1
MsG0380016500.01.T01 MTR_5g091150 33.333 192 89 9 103 265 2 183 5.99e-15 72.8
MsG0380016500.01.T01 MTR_6g090260 30.286 175 90 4 172 317 75 246 6.01e-15 73.9
MsG0380016500.01.T01 MTR_6g009350 33.146 178 74 7 152 296 30 195 7.14e-15 72.4
MsG0380016500.01.T01 MTR_8g033110 44.248 113 56 4 7 115 1 110 1.83e-14 74.3
MsG0380016500.01.T01 MTR_5g097680 29.268 246 120 9 113 329 203 423 2.24e-14 73.9
MsG0380016500.01.T01 MTR_5g097680 36.364 121 66 3 10 124 8 123 3.66e-13 70.1
MsG0380016500.01.T01 MTR_3g018750 29.952 207 94 10 165 329 40 237 4.66e-14 71.2
MsG0380016500.01.T01 MTR_2g104260 29.066 289 121 11 13 236 8 277 7.90e-14 71.2
MsG0380016500.01.T01 MTR_8g033090 41.000 100 59 0 16 115 11 110 9.69e-14 72.0
MsG0380016500.01.T01 MTR_8g041440 35.000 120 49 3 7 117 3 102 1.93e-13 66.6
MsG0380016500.01.T01 MTR_8g032980 23.624 436 203 19 10 332 4 422 3.41e-13 70.5
MsG0380016500.01.T01 MTR_5g097650 41.837 98 43 3 16 111 19 104 6.49e-13 66.2
MsG0380016500.01.T01 MTR_5g074850 41.284 109 55 3 3 108 19 121 8.07e-13 69.7
MsG0380016500.01.T01 MTR_5g074850 37.864 103 49 5 172 267 235 329 2.27e-11 65.5
MsG0380016500.01.T01 MTR_2g021920 27.485 171 93 4 172 312 85 254 6.43e-12 65.5
MsG0380016500.01.T01 MTR_5g075370 40.336 119 57 5 15 128 4 113 6.72e-12 67.0
MsG0380016500.01.T01 MTR_5g075370 37.864 103 49 5 172 267 211 305 2.19e-11 65.5
MsG0380016500.01.T01 MTR_5g066420 32.468 154 57 6 205 319 1 146 8.57e-12 62.8
MsG0380016500.01.T01 MTR_3g019290 39.604 101 58 2 15 113 10 109 1.18e-11 63.2
MsG0380016500.01.T01 MTR_8g046200 33.333 114 71 1 4 117 1 109 1.21e-11 65.5
MsG0380016500.01.T01 MTR_3g047580 41.333 75 42 1 13 85 8 82 4.14e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 50 sgRNAs with CRISPR-Local

Find 79 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAAGATGATAAACTAGTA+TGG 0.271374 3:-84377523 MsG0380016500.01.T01:CDS
TACTCTGATTATACTATGTT+TGG 0.288160 3:-84377751 MsG0380016500.01.T01:CDS
CCAGTGTCATCGTCTTTAAA+TGG 0.310071 3:+84378337 None:intergenic
TACTCTTGCAACAAACAAAA+AGG 0.311298 3:-84378644 MsG0380016500.01.T01:CDS
TGGCGAGAGATTTGAGAATA+AGG 0.369670 3:-84378380 MsG0380016500.01.T01:CDS
AATCGTTTCAATGATTTAAG+AGG 0.372028 3:+84378571 None:intergenic
AGAATAAGGTCAAATTAGAT+TGG 0.382141 3:-84378366 MsG0380016500.01.T01:CDS
ATTAAGTTCTCCATCGGAGC+TGG 0.415846 3:-84377575 MsG0380016500.01.T01:CDS
GGGGAATTCGGTTCTCATAT+AGG 0.424841 3:-84377455 MsG0380016500.01.T01:CDS
TTCAGTTGATGAAGAATGTT+TGG 0.424986 3:-84377824 MsG0380016500.01.T01:CDS
ATAATCAGAGTATGAAGGTT+CGG 0.429194 3:+84377762 None:intergenic
TAATCAGAGTATGAAGGTTC+GGG 0.431050 3:+84377763 None:intergenic
AATAATAACTTAGATATAAG+TGG 0.444539 3:+84378524 None:intergenic
CCGATGGAGAACTTAATAGA+AGG 0.459257 3:+84377581 None:intergenic
TTTGTTTGTTGCAAGAGTAA+TGG 0.464945 3:+84378648 None:intergenic
CTGATTATACTATGTTTGGA+TGG 0.469528 3:-84377747 MsG0380016500.01.T01:CDS
ACATATCTCGTCCTACATCA+TGG 0.477492 3:-84378451 MsG0380016500.01.T01:CDS
CTGTAAGCTCCCCATGATGT+AGG 0.489799 3:+84378440 None:intergenic
GACATCGGAGTATACATTGA+TGG 0.495447 3:-84377877 MsG0380016500.01.T01:CDS
GGAGAACTTAATAGAAGGTA+AGG 0.496274 3:+84377586 None:intergenic
TTGAATGTGTAAGCAAATCC+TGG 0.506637 3:-84378549 MsG0380016500.01.T01:CDS
AAGATAATGAAGATAGACCT+TGG 0.507928 3:-84377981 MsG0380016500.01.T01:CDS
CATATCTCGTCCTACATCAT+GGG 0.509570 3:-84378450 MsG0380016500.01.T01:CDS
AGATAATGAAGATAGACCTT+GGG 0.514045 3:-84377980 MsG0380016500.01.T01:CDS
GGTCTATTGGATTGTTCTCA+AGG 0.514184 3:-84377693 MsG0380016500.01.T01:intron
TTGATCGGAAATGGAAGACT+TGG 0.514244 3:-84378674 None:intergenic
TCTCAAATCTCTCGCCAGAA+AGG 0.529038 3:+84378386 None:intergenic
CCTTCTATTAAGTTCTCCAT+CGG 0.532150 3:-84377581 MsG0380016500.01.T01:CDS
CGAGATATGTATCATCGTAA+TGG 0.532314 3:+84378464 None:intergenic
ACATTGATGGAATGTGTCAT+TGG 0.535418 3:-84377864 MsG0380016500.01.T01:CDS
AAAAGATGATAAACTAGTAT+GGG 0.541731 3:-84377522 MsG0380016500.01.T01:CDS
TTATACTATGTTTGGATGGG+TGG 0.542281 3:-84377743 MsG0380016500.01.T01:CDS
TTAAGTTCTCCATCGGAGCT+GGG 0.559207 3:-84377574 MsG0380016500.01.T01:CDS
TGATTATACTATGTTTGGAT+GGG 0.562284 3:-84377746 MsG0380016500.01.T01:CDS
ATAGTATAATCAGAGTATGA+AGG 0.569282 3:+84377757 None:intergenic
TTTAGAGAATACATCTCCCA+AGG 0.576519 3:+84377964 None:intergenic
AAAGGATAGCAACTACATAC+CGG 0.577504 3:-84378626 MsG0380016500.01.T01:CDS
TCATCGTCTTTAAATGGAGG+TGG 0.583249 3:+84378343 None:intergenic
ATGAACACTGCGATACTCTC+CGG 0.583524 3:+84378607 None:intergenic
AAAGGAAATAAAACTCGCAA+TGG 0.585495 3:+84378404 None:intergenic
GCTCTTCTTCCCAGCTCCGA+TGG 0.594977 3:+84377565 None:intergenic
TTGATGGAATGTGTCATTGG+TGG 0.620894 3:-84377861 MsG0380016500.01.T01:CDS
TGATGGAATGTGTCATTGGT+GGG 0.623657 3:-84377860 MsG0380016500.01.T01:CDS
CCATTTAAAGACGATGACAC+TGG 0.642860 3:-84378337 MsG0380016500.01.T01:intron
GTGTCATCGTCTTTAAATGG+AGG 0.651359 3:+84378340 None:intergenic
ACTTAGATATAAGTGGAACC+AGG 0.651422 3:+84378531 None:intergenic
ATGGGTGGAAGAGAGACACT+TGG 0.669467 3:-84377728 MsG0380016500.01.T01:CDS
ATATCTCGTCCTACATCATG+GGG 0.673301 3:-84378449 MsG0380016500.01.T01:CDS
TATACTCTAAAGCAAGACAT+CGG 0.687101 3:-84377892 MsG0380016500.01.T01:CDS
TGTAACTAGTAGTGTGACTG+AGG 0.729887 3:-84377495 MsG0380016500.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTGATATAAAAATCTC+AGG + Chr3:84378424-84378443 None:intergenic 15.0%
!! AATAATAACTTAGATATAAG+TGG + Chr3:84377558-84377577 None:intergenic 15.0%
!!! GAGATTTTTATATCAATTTT+AGG - Chr3:84378424-84378443 MsG0380016500.01.T01:CDS 15.0%
!! AAAAGATGATAAACTAGTAT+GGG - Chr3:84378557-84378576 MsG0380016500.01.T01:CDS 20.0%
! AATCGTTTCAATGATTTAAG+AGG + Chr3:84377511-84377530 None:intergenic 25.0%
! AGAATAAGGTCAAATTAGAT+TGG - Chr3:84377713-84377732 MsG0380016500.01.T01:CDS 25.0%
! ATAGTATAATCAGAGTATGA+AGG + Chr3:84378325-84378344 None:intergenic 25.0%
! CAAAAGATGATAAACTAGTA+TGG - Chr3:84378556-84378575 MsG0380016500.01.T01:CDS 25.0%
! TACTCTGATTATACTATGTT+TGG - Chr3:84378328-84378347 MsG0380016500.01.T01:intron 25.0%
! TGATTATACTATGTTTGGAT+GGG - Chr3:84378333-84378352 MsG0380016500.01.T01:intron 25.0%
! TTAGGTTCTGTTAGTATTAA+TGG - Chr3:84377775-84377794 MsG0380016500.01.T01:CDS 25.0%
!! ATTCTCTAAAAAGTAACACT+TGG - Chr3:84378128-84378147 MsG0380016500.01.T01:CDS 25.0%
!! GACACTGGTATTTATATTTT+AGG - Chr3:84377757-84377776 MsG0380016500.01.T01:CDS 25.0%
!!! AGGAGTTTGTTTTTAAATCA+GGG - Chr3:84378604-84378623 MsG0380016500.01.T01:CDS 25.0%
!!! ATATCAATTTTAGGTGAACT+CGG - Chr3:84378433-84378452 MsG0380016500.01.T01:CDS 25.0%
!!! TAGACATCAAATTTTTCAGA+TGG + Chr3:84377591-84377610 None:intergenic 25.0%
AAAGGAAATAAAACTCGCAA+TGG + Chr3:84377678-84377697 None:intergenic 30.0%
AAGATAATGAAGATAGACCT+TGG - Chr3:84378098-84378117 MsG0380016500.01.T01:CDS 30.0%
AGATAATGAAGATAGACCTT+GGG - Chr3:84378099-84378118 MsG0380016500.01.T01:CDS 30.0%
ATAATCAGAGTATGAAGGTT+CGG + Chr3:84378320-84378339 None:intergenic 30.0%
ATCTTAAATTCCGCAATAGT+TGG + Chr3:84377849-84377868 None:intergenic 30.0%
CTGATTATACTATGTTTGGA+TGG - Chr3:84378332-84378351 MsG0380016500.01.T01:intron 30.0%
TACTCTTGCAACAAACAAAA+AGG - Chr3:84377435-84377454 MsG0380016500.01.T01:CDS 30.0%
! AGACACTTGGCAATTTTAAA+TGG - Chr3:84378364-84378383 MsG0380016500.01.T01:CDS 30.0%
! GACACTTGGCAATTTTAAAT+GGG - Chr3:84378365-84378384 MsG0380016500.01.T01:CDS 30.0%
! GCAATTTTAAATGGGTCTAT+TGG - Chr3:84378373-84378392 MsG0380016500.01.T01:CDS 30.0%
! GTTTTTAAATCAGGGGAATT+CGG - Chr3:84378612-84378631 MsG0380016500.01.T01:CDS 30.0%
! TTTGTTTGTTGCAAGAGTAA+TGG + Chr3:84377434-84377453 None:intergenic 30.0%
!! TATACTCTAAAGCAAGACAT+CGG - Chr3:84378187-84378206 MsG0380016500.01.T01:intron 30.0%
!! TTCAGTTGATGAAGAATGTT+TGG - Chr3:84378255-84378274 MsG0380016500.01.T01:intron 30.0%
!!! GAGGAGTTTGTTTTTAAATC+AGG - Chr3:84378603-84378622 MsG0380016500.01.T01:CDS 30.0%
!!! GGAGTTTGTTTTTAAATCAG+GGG - Chr3:84378605-84378624 MsG0380016500.01.T01:CDS 30.0%
AAAGGATAGCAACTACATAC+CGG - Chr3:84377453-84377472 MsG0380016500.01.T01:CDS 35.0%
AATCCATGAAGATTGTATCG+AGG + Chr3:84377914-84377933 None:intergenic 35.0%
ACATTGATGGAATGTGTCAT+TGG - Chr3:84378215-84378234 MsG0380016500.01.T01:intron 35.0%
ACTTAGATATAAGTGGAACC+AGG + Chr3:84377551-84377570 None:intergenic 35.0%
ATCCATGAAGATTGTATCGA+GGG + Chr3:84377913-84377932 None:intergenic 35.0%
ATGAGTGGTACATACTCAAA+AGG + Chr3:84377885-84377904 None:intergenic 35.0%
CCTTCTATTAAGTTCTCCAT+CGG - Chr3:84378498-84378517 MsG0380016500.01.T01:CDS 35.0%
CGAGATATGTATCATCGTAA+TGG + Chr3:84377618-84377637 None:intergenic 35.0%
CGATACAATCTTCATGGATT+TGG - Chr3:84377914-84377933 MsG0380016500.01.T01:CDS 35.0%
GGAGAACTTAATAGAAGGTA+AGG + Chr3:84378496-84378515 None:intergenic 35.0%
TAATCAGAGTATGAAGGTTC+GGG + Chr3:84378319-84378338 None:intergenic 35.0%
TGAGTGGTACATACTCAAAA+GGG + Chr3:84377884-84377903 None:intergenic 35.0%
TTATACTATGTTTGGATGGG+TGG - Chr3:84378336-84378355 MsG0380016500.01.T01:intron 35.0%
TTGAATGTGTAAGCAAATCC+TGG - Chr3:84377530-84377549 MsG0380016500.01.T01:CDS 35.0%
TTTAGAGAATACATCTCCCA+AGG + Chr3:84378118-84378137 None:intergenic 35.0%
TTTGTGGAATCCAACTATTG+CGG - Chr3:84377836-84377855 MsG0380016500.01.T01:CDS 35.0%
! CTCTAAAAAGTAACACTTGG+AGG - Chr3:84378131-84378150 MsG0380016500.01.T01:intron 35.0%
!!! CTAGTAAACGACTTGTTTTG+TGG - Chr3:84377820-84377839 MsG0380016500.01.T01:CDS 35.0%
!!! TGCGAGTTTTATTTCCTTTC+TGG - Chr3:84377679-84377698 MsG0380016500.01.T01:intron 35.0%
ACATATCTCGTCCTACATCA+TGG - Chr3:84377628-84377647 MsG0380016500.01.T01:intron 40.0%
ATATCTCGTCCTACATCATG+GGG - Chr3:84377630-84377649 MsG0380016500.01.T01:intron 40.0%
CATATCTCGTCCTACATCAT+GGG - Chr3:84377629-84377648 MsG0380016500.01.T01:intron 40.0%
CCAGTGTCATCGTCTTTAAA+TGG + Chr3:84377745-84377764 None:intergenic 40.0%
CCATTTAAAGACGATGACAC+TGG - Chr3:84377742-84377761 MsG0380016500.01.T01:CDS 40.0%
CCGATGGAGAACTTAATAGA+AGG + Chr3:84378501-84378520 None:intergenic 40.0%
GACATCGGAGTATACATTGA+TGG - Chr3:84378202-84378221 MsG0380016500.01.T01:intron 40.0%
GGTCTATTGGATTGTTCTCA+AGG - Chr3:84378386-84378405 MsG0380016500.01.T01:CDS 40.0%
GTGTCATCGTCTTTAAATGG+AGG + Chr3:84377742-84377761 None:intergenic 40.0%
TCATCGTCTTTAAATGGAGG+TGG + Chr3:84377739-84377758 None:intergenic 40.0%
TCCATGAAGATTGTATCGAG+GGG + Chr3:84377912-84377931 None:intergenic 40.0%
TGGCGAGAGATTTGAGAATA+AGG - Chr3:84377699-84377718 MsG0380016500.01.T01:CDS 40.0%
TGTAACTAGTAGTGTGACTG+AGG - Chr3:84378584-84378603 MsG0380016500.01.T01:CDS 40.0%
! TGATGGAATGTGTCATTGGT+GGG - Chr3:84378219-84378238 MsG0380016500.01.T01:intron 40.0%
! TTGATGGAATGTGTCATTGG+TGG - Chr3:84378218-84378237 MsG0380016500.01.T01:intron 40.0%
!! AACTCGGTGTACAAGAATCT+TGG - Chr3:84378449-84378468 MsG0380016500.01.T01:CDS 40.0%
ACATACTCAAAAGGGCTAGG+AGG + Chr3:84377876-84377895 None:intergenic 45.0%
ACCCCTCGATACAATCTTCA+TGG - Chr3:84377908-84377927 MsG0380016500.01.T01:CDS 45.0%
ATGAACACTGCGATACTCTC+CGG + Chr3:84377475-84377494 None:intergenic 45.0%
ATTAAGTTCTCCATCGGAGC+TGG - Chr3:84378504-84378523 MsG0380016500.01.T01:CDS 45.0%
GGGGAATTCGGTTCTCATAT+AGG - Chr3:84378624-84378643 MsG0380016500.01.T01:CDS 45.0%
GGTACATACTCAAAAGGGCT+AGG + Chr3:84377879-84377898 None:intergenic 45.0%
TCTCAAATCTCTCGCCAGAA+AGG + Chr3:84377696-84377715 None:intergenic 45.0%
TTAAGTTCTCCATCGGAGCT+GGG - Chr3:84378505-84378524 MsG0380016500.01.T01:CDS 45.0%
ATGGGTGGAAGAGAGACACT+TGG - Chr3:84378351-84378370 MsG0380016500.01.T01:CDS 50.0%
CTGTAAGCTCCCCATGATGT+AGG + Chr3:84377642-84377661 None:intergenic 50.0%
GTATCGAGGGGTTTGATGAG+TGG + Chr3:84377900-84377919 None:intergenic 50.0%
GCTCTTCTTCCCAGCTCCGA+TGG + Chr3:84378517-84378536 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 84377415 84378686 84377415 ID=MsG0380016500.01;Name=MsG0380016500.01
Chr3 mRNA 84377415 84378686 84377415 ID=MsG0380016500.01.T01;Parent=MsG0380016500.01;Name=MsG0380016500.01.T01;_AED=0.49;_eAED=0.50;_QI=0|0|0|1|1|1|3|0|332
Chr3 exon 84378338 84378686 84378338 ID=MsG0380016500.01.T01:exon:14293;Parent=MsG0380016500.01.T01
Chr3 exon 84377694 84378147 84377694 ID=MsG0380016500.01.T01:exon:14292;Parent=MsG0380016500.01.T01
Chr3 exon 84377415 84377610 84377415 ID=MsG0380016500.01.T01:exon:14291;Parent=MsG0380016500.01.T01
Chr3 CDS 84378338 84378686 84378338 ID=MsG0380016500.01.T01:cds;Parent=MsG0380016500.01.T01
Chr3 CDS 84377694 84378147 84377694 ID=MsG0380016500.01.T01:cds;Parent=MsG0380016500.01.T01
Chr3 CDS 84377415 84377610 84377415 ID=MsG0380016500.01.T01:cds;Parent=MsG0380016500.01.T01
Gene Sequence

>MsG0380016500.01.T01

ATGGAAGACTTGGAAGCCATTACTCTTGCAACAAACAAAAAGGATAGCAACTACATACCGGAGAGTATCGCAGTGTTCATTATGTCAAAACTGCCTCTTAAATCATTGAAACGATTTGAATGTGTAAGCAAATCCTGGTTCCACTTATATCTAAGTTATTATTTCAGTAAAATCCATCTGAAAAATTTGATGTCTAATAACCATTACGATGATACATATCTCGTCCTACATCATGGGGAGCTTACAGAAAAATTCAATTACCATTGCGAGTTTTATTTCCTTTCTGGCGAGAGATTTGAGAATAAGGTCAAATTAGATTGGCCACCTCCATTTAAAGACGATGACACTGATGACTATAAAGTGATTAATTTTGTAAATTCTGTTCGCTTAGTTGATGAAGATATTGAAGATGAAGATGCTGAAGATGAAGATTATGAAGATGAAGATACTGAAGTTGAAGATTATGAAGATGAAATTACTGAAGATAAATATGAAGATAATGAAGATAGACCTTGGGAGATGTATTCTCTAAAAAGTAACACTTGGAGGAAGCTTAGTGTCAATATGCATAATCGTTGTTACTATACTCTAAAGCAAGACATCGGAGTATACATTGATGGAATGTGTCATTGGTGGGCTATAACTGATGATTCAGTTGATGAAGAATGTTTGGTGTCGTTTGATTTTAGCAGCGAGATGTTGTTTACAACACCCGAACCTTCATACTCTGATTATACTATGTTTGGATGGGTGGAAGAGAGACACTTGGCAATTTTAAATGGGTCTATTGGATTGTTCTCAAGATCCTTACCTTCTATTAAGTTCTCCATCGGAGCTGGGAAGAAGAGCAATATACTTTTCTTTAAAACAAAAGATGATAAACTAGTATGGGTTGATGTAACTAGTAGTGTGACTGAGGAGTTTGTTTTTAAATCAGGGGAATTCGGTTCTCATATAGGAAAGTACAAGAGAAGCTTTAAATCAATAATGAATAGTTAA
Protein sequence

>MsG0380016500.01.T01

MEDLEAITLATNKKDSNYIPESIAVFIMSKLPLKSLKRFECVSKSWFHLYLSYYFSKIHLKNLMSNNHYDDTYLVLHHGELTEKFNYHCEFYFLSGERFENKVKLDWPPPFKDDDTDDYKVINFVNSVRLVDEDIEDEDAEDEDYEDEDTEVEDYEDEITEDKYEDNEDRPWEMYSLKSNTWRKLSVNMHNRCYYTLKQDIGVYIDGMCHWWAITDDSVDEECLVSFDFSSEMLFTTPEPSYSDYTMFGWVEERHLAILNGSIGLFSRSLPSIKFSIGAGKKSNILFFKTKDDKLVWVDVTSSVTEEFVFKSGEFGSHIGKYKRSFKSIMNS*