Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580027159.01.T01 | XP_039686303.1 | 67.296 | 318 | 75 | 3 | 1 | 292 | 95 | 409 | 5.52E-142 | 416 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580027159.01.T01 | Q9SU30 | 30.612 | 343 | 165 | 10 | 3 | 292 | 91 | 413 | 8.58E-37 | 138 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580027159.01.T01 | A0A072V5P2 | 67.296 | 318 | 75 | 3 | 1 | 292 | 95 | 409 | 2.64e-142 | 416 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580027159.01.T01 | MTR_2g426060 | 67.296 | 318 | 75 | 3 | 1 | 292 | 95 | 409 | 6.68e-146 | 416 |
MsG0580027159.01.T01 | MTR_2g426090 | 63.272 | 324 | 80 | 5 | 1 | 292 | 96 | 412 | 3.82e-135 | 389 |
MsG0580027159.01.T01 | MTR_2g425980 | 65.372 | 309 | 79 | 3 | 2 | 284 | 95 | 401 | 1.08e-134 | 387 |
MsG0580027159.01.T01 | MTR_2g426070 | 65.359 | 306 | 72 | 4 | 1 | 280 | 101 | 398 | 4.62e-134 | 385 |
MsG0580027159.01.T01 | MTR_2g025420 | 62.229 | 323 | 87 | 4 | 3 | 292 | 104 | 424 | 5.81e-134 | 386 |
MsG0580027159.01.T01 | MTR_0667s0010 | 60.802 | 324 | 91 | 3 | 1 | 292 | 90 | 409 | 3.93e-129 | 373 |
MsG0580027159.01.T01 | MTR_2g426020 | 62.620 | 313 | 73 | 5 | 1 | 280 | 96 | 397 | 2.48e-128 | 371 |
MsG0580027159.01.T01 | MTR_2g028140 | 62.813 | 320 | 87 | 5 | 1 | 292 | 103 | 418 | 6.41e-127 | 368 |
MsG0580027159.01.T01 | MTR_2g028130 | 59.936 | 312 | 84 | 4 | 1 | 278 | 102 | 406 | 1.41e-118 | 347 |
MsG0580027159.01.T01 | MTR_2g025960 | 59.810 | 316 | 82 | 6 | 1 | 280 | 1 | 307 | 1.56e-118 | 343 |
MsG0580027159.01.T01 | MTR_2g024100 | 60.188 | 319 | 88 | 4 | 1 | 285 | 92 | 405 | 5.31e-117 | 342 |
MsG0580027159.01.T01 | MTR_3g083010 | 59.937 | 317 | 84 | 7 | 1 | 280 | 104 | 414 | 7.23e-117 | 342 |
MsG0580027159.01.T01 | MTR_4g070550 | 58.567 | 321 | 90 | 7 | 1 | 292 | 97 | 403 | 9.14e-114 | 334 |
MsG0580027159.01.T01 | MTR_8g099460 | 58.514 | 323 | 95 | 4 | 1 | 292 | 89 | 403 | 2.28e-113 | 333 |
MsG0580027159.01.T01 | MTR_2g028160 | 56.402 | 328 | 98 | 7 | 1 | 292 | 102 | 420 | 4.20e-112 | 330 |
MsG0580027159.01.T01 | MTR_2g031720 | 55.590 | 322 | 96 | 6 | 1 | 292 | 92 | 396 | 1.53e-111 | 328 |
MsG0580027159.01.T01 | MTR_2g028110 | 57.705 | 305 | 88 | 6 | 1 | 278 | 86 | 376 | 1.69e-107 | 317 |
MsG0580027159.01.T01 | MTR_2g021050 | 54.921 | 315 | 81 | 3 | 1 | 280 | 91 | 379 | 3.20e-106 | 314 |
MsG0580027159.01.T01 | MTR_2g031680 | 54.088 | 318 | 105 | 4 | 1 | 292 | 87 | 389 | 2.55e-104 | 309 |
MsG0580027159.01.T01 | MTR_1g068835 | 55.660 | 318 | 92 | 8 | 1 | 292 | 87 | 381 | 3.76e-104 | 309 |
MsG0580027159.01.T01 | MTR_2g031640 | 54.221 | 308 | 98 | 5 | 1 | 280 | 88 | 380 | 1.55e-102 | 305 |
MsG0580027159.01.T01 | MTR_1g068875 | 56.918 | 318 | 87 | 9 | 1 | 292 | 87 | 380 | 1.07e-101 | 302 |
MsG0580027159.01.T01 | MTR_2g026010 | 53.191 | 329 | 101 | 7 | 1 | 292 | 86 | 398 | 2.87e-97 | 292 |
MsG0580027159.01.T01 | MTR_1g068860 | 53.115 | 305 | 96 | 8 | 1 | 278 | 87 | 371 | 1.71e-87 | 266 |
MsG0580027159.01.T01 | MTR_2g024110 | 45.215 | 303 | 108 | 8 | 3 | 268 | 91 | 372 | 3.35e-76 | 237 |
MsG0580027159.01.T01 | MTR_4g133170 | 36.890 | 328 | 150 | 6 | 1 | 292 | 86 | 392 | 5.74e-62 | 201 |
MsG0580027159.01.T01 | MTR_4g006270 | 37.037 | 324 | 121 | 9 | 1 | 278 | 85 | 371 | 1.20e-52 | 177 |
MsG0580027159.01.T01 | MTR_2g037520 | 69.748 | 119 | 30 | 1 | 124 | 242 | 1 | 113 | 1.90e-49 | 162 |
MsG0580027159.01.T01 | MTR_2g040050 | 42.373 | 236 | 90 | 8 | 1 | 230 | 38 | 233 | 4.42e-47 | 158 |
MsG0580027159.01.T01 | MTR_2g031700 | 52.795 | 161 | 62 | 2 | 1 | 161 | 87 | 233 | 6.50e-47 | 159 |
MsG0580027159.01.T01 | MTR_1g068905 | 41.281 | 281 | 101 | 13 | 1 | 278 | 87 | 306 | 1.00e-40 | 144 |
MsG0580027159.01.T01 | MTR_2g025440 | 52.308 | 130 | 28 | 2 | 182 | 278 | 2 | 130 | 2.75e-34 | 124 |
MsG0580027159.01.T01 | MTR_5g083940 | 37.662 | 231 | 81 | 6 | 1 | 231 | 64 | 231 | 2.37e-33 | 124 |
MsG0580027159.01.T01 | MTR_2g021150 | 32.127 | 221 | 121 | 7 | 2 | 221 | 112 | 304 | 8.49e-29 | 113 |
MsG0580027159.01.T01 | MTR_3g009300 | 30.317 | 221 | 127 | 8 | 1 | 221 | 95 | 288 | 2.42e-25 | 103 |
MsG0580027159.01.T01 | MTR_3g014570 | 29.279 | 222 | 127 | 6 | 3 | 221 | 121 | 315 | 2.96e-25 | 103 |
MsG0580027159.01.T01 | MTR_3g006670 | 31.081 | 222 | 121 | 7 | 3 | 221 | 144 | 336 | 3.10e-25 | 104 |
MsG0580027159.01.T01 | MTR_3g007270 | 29.730 | 222 | 125 | 7 | 3 | 221 | 150 | 343 | 2.75e-24 | 101 |
MsG0580027159.01.T01 | MTR_3g024130 | 29.148 | 223 | 126 | 6 | 2 | 221 | 57 | 250 | 4.06e-24 | 99.8 |
MsG0580027159.01.T01 | MTR_7g407070 | 30.088 | 226 | 132 | 9 | 2 | 221 | 132 | 337 | 1.34e-23 | 99.8 |
MsG0580027159.01.T01 | MTR_3g013770 | 30.638 | 235 | 122 | 10 | 3 | 231 | 132 | 331 | 8.96e-23 | 97.4 |
MsG0580027159.01.T01 | MTR_3g086960 | 41.290 | 155 | 45 | 5 | 147 | 264 | 9 | 154 | 1.89e-22 | 91.3 |
MsG0580027159.01.T01 | MTR_6g027890 | 30.435 | 230 | 126 | 13 | 8 | 221 | 49 | 260 | 2.27e-22 | 95.1 |
MsG0580027159.01.T01 | MTR_7g110370 | 55.556 | 90 | 35 | 2 | 152 | 241 | 7 | 91 | 3.88e-22 | 92.8 |
MsG0580027159.01.T01 | MTR_3g014540 | 29.148 | 223 | 126 | 8 | 3 | 221 | 121 | 315 | 4.92e-22 | 95.1 |
MsG0580027159.01.T01 | MTR_3g007330 | 29.911 | 224 | 121 | 10 | 3 | 221 | 135 | 327 | 5.82e-22 | 95.1 |
MsG0580027159.01.T01 | MTR_3g010390 | 29.386 | 228 | 128 | 7 | 2 | 221 | 133 | 335 | 6.50e-22 | 94.7 |
MsG0580027159.01.T01 | MTR_3g436150 | 30.493 | 223 | 126 | 8 | 4 | 221 | 133 | 331 | 2.77e-21 | 93.2 |
MsG0580027159.01.T01 | MTR_6g027910 | 27.632 | 228 | 134 | 11 | 1 | 221 | 107 | 310 | 1.64e-20 | 90.9 |
MsG0580027159.01.T01 | MTR_6g065980 | 26.941 | 219 | 120 | 8 | 4 | 222 | 109 | 287 | 4.78e-20 | 89.4 |
MsG0580027159.01.T01 | MTR_3g009310 | 30.180 | 222 | 119 | 9 | 3 | 221 | 138 | 326 | 8.45e-20 | 89.0 |
MsG0580027159.01.T01 | MTR_3g007360 | 30.131 | 229 | 117 | 9 | 3 | 221 | 143 | 338 | 1.08e-19 | 88.6 |
MsG0580027159.01.T01 | MTR_2g021155 | 29.279 | 222 | 126 | 7 | 3 | 221 | 128 | 321 | 1.15e-19 | 89.4 |
MsG0580027159.01.T01 | MTR_2g021155 | 28.125 | 192 | 117 | 8 | 31 | 219 | 711 | 884 | 2.55e-12 | 67.8 |
MsG0580027159.01.T01 | MTR_3g007410 | 30.131 | 229 | 117 | 9 | 3 | 221 | 143 | 338 | 1.30e-19 | 88.6 |
MsG0580027159.01.T01 | MTR_4g061340 | 27.826 | 230 | 124 | 9 | 3 | 221 | 117 | 315 | 2.57e-19 | 87.4 |
MsG0580027159.01.T01 | MTR_3g007430 | 25.664 | 226 | 138 | 8 | 1 | 222 | 130 | 329 | 2.90e-19 | 87.4 |
MsG0580027159.01.T01 | MTR_4g023120 | 30.328 | 244 | 129 | 10 | 5 | 238 | 98 | 310 | 3.52e-19 | 87.0 |
MsG0580027159.01.T01 | MTR_4g055060 | 30.544 | 239 | 132 | 10 | 2 | 235 | 124 | 333 | 3.56e-19 | 87.0 |
MsG0580027159.01.T01 | MTR_4g028750 | 26.432 | 227 | 148 | 9 | 16 | 230 | 124 | 343 | 4.02e-19 | 87.0 |
MsG0580027159.01.T01 | MTR_5g057710 | 31.674 | 221 | 117 | 11 | 4 | 221 | 141 | 330 | 6.77e-19 | 86.3 |
MsG0580027159.01.T01 | MTR_7g110360 | 43.103 | 116 | 31 | 2 | 182 | 262 | 205 | 320 | 1.96e-18 | 84.3 |
MsG0580027159.01.T01 | MTR_5g011200 | 26.667 | 225 | 125 | 8 | 3 | 221 | 115 | 305 | 2.01e-18 | 84.7 |
MsG0580027159.01.T01 | MTR_4g130330 | 29.237 | 236 | 132 | 10 | 5 | 221 | 106 | 325 | 2.34e-18 | 84.7 |
MsG0580027159.01.T01 | MTR_3g013740 | 27.556 | 225 | 128 | 10 | 3 | 221 | 147 | 342 | 2.52e-18 | 84.7 |
MsG0580027159.01.T01 | MTR_4g028510 | 24.803 | 254 | 168 | 8 | 16 | 255 | 124 | 368 | 2.56e-18 | 85.1 |
MsG0580027159.01.T01 | MTR_3g009260 | 27.523 | 218 | 128 | 7 | 4 | 221 | 131 | 318 | 2.83e-18 | 84.3 |
MsG0580027159.01.T01 | MTR_3g009240 | 26.364 | 220 | 130 | 8 | 4 | 221 | 127 | 316 | 2.99e-18 | 84.3 |
MsG0580027159.01.T01 | MTR_4g023070 | 29.752 | 242 | 133 | 9 | 5 | 238 | 98 | 310 | 4.05e-18 | 84.0 |
MsG0580027159.01.T01 | MTR_6g021880 | 25.714 | 245 | 155 | 8 | 3 | 244 | 119 | 339 | 5.54e-18 | 83.6 |
MsG0580027159.01.T01 | MTR_0044s0300 | 27.854 | 219 | 122 | 11 | 4 | 221 | 136 | 319 | 5.62e-18 | 83.6 |
MsG0580027159.01.T01 | MTR_6g007150 | 27.477 | 222 | 135 | 7 | 1 | 220 | 67 | 264 | 5.86e-18 | 83.2 |
MsG0580027159.01.T01 | MTR_2g046900 | 28.125 | 224 | 131 | 8 | 2 | 221 | 122 | 319 | 8.73e-18 | 83.2 |
MsG0580027159.01.T01 | MTR_5g007610 | 29.004 | 231 | 125 | 10 | 3 | 221 | 133 | 336 | 9.96e-18 | 82.8 |
MsG0580027159.01.T01 | MTR_4g118370 | 28.788 | 198 | 94 | 6 | 31 | 221 | 34 | 191 | 1.09e-17 | 81.3 |
MsG0580027159.01.T01 | MTR_3g011100 | 28.829 | 222 | 127 | 8 | 3 | 221 | 332 | 525 | 1.11e-17 | 83.6 |
MsG0580027159.01.T01 | MTR_6g079810 | 24.901 | 253 | 155 | 10 | 16 | 244 | 175 | 416 | 1.47e-17 | 82.8 |
MsG0580027159.01.T01 | MTR_5g046280 | 26.087 | 207 | 126 | 8 | 16 | 221 | 6 | 186 | 2.02e-17 | 80.1 |
MsG0580027159.01.T01 | MTR_3g006570 | 29.756 | 205 | 121 | 7 | 16 | 219 | 121 | 303 | 2.16e-17 | 82.0 |
MsG0580027159.01.T01 | MTR_0054s0090 | 26.316 | 247 | 149 | 10 | 4 | 231 | 120 | 352 | 2.38e-17 | 82.0 |
MsG0580027159.01.T01 | MTR_3g036290 | 26.941 | 219 | 118 | 7 | 3 | 221 | 117 | 293 | 2.60e-17 | 81.3 |
MsG0580027159.01.T01 | MTR_2g021190 | 25.561 | 223 | 130 | 9 | 2 | 219 | 115 | 306 | 2.64e-17 | 81.6 |
MsG0580027159.01.T01 | MTR_5g046300 | 26.087 | 207 | 126 | 8 | 16 | 221 | 103 | 283 | 3.36e-17 | 80.9 |
MsG0580027159.01.T01 | MTR_5g046290 | 26.087 | 207 | 126 | 8 | 16 | 221 | 103 | 283 | 3.36e-17 | 80.9 |
MsG0580027159.01.T01 | MTR_2g078900 | 27.570 | 214 | 120 | 11 | 6 | 219 | 133 | 311 | 4.02e-17 | 80.9 |
MsG0580027159.01.T01 | MTR_8g054320 | 31.088 | 193 | 102 | 7 | 29 | 221 | 76 | 237 | 4.77e-17 | 80.1 |
MsG0580027159.01.T01 | MTR_4g117850 | 27.888 | 251 | 136 | 9 | 1 | 237 | 112 | 331 | 5.78e-17 | 80.5 |
MsG0580027159.01.T01 | MTR_1g094210 | 26.484 | 219 | 123 | 7 | 3 | 221 | 152 | 332 | 6.92e-17 | 80.5 |
MsG0580027159.01.T01 | MTR_4g134560 | 28.571 | 252 | 135 | 13 | 3 | 244 | 171 | 387 | 7.09e-17 | 80.9 |
MsG0580027159.01.T01 | MTR_1g094210 | 26.484 | 219 | 123 | 7 | 3 | 221 | 152 | 332 | 8.51e-17 | 80.1 |
MsG0580027159.01.T01 | MTR_4g031770 | 26.316 | 228 | 125 | 6 | 2 | 221 | 97 | 289 | 8.51e-17 | 80.1 |
MsG0580027159.01.T01 | MTR_6g080680 | 26.316 | 247 | 156 | 11 | 5 | 244 | 121 | 348 | 9.99e-17 | 80.1 |
MsG0580027159.01.T01 | MTR_3g011060 | 29.515 | 227 | 120 | 12 | 3 | 221 | 130 | 324 | 1.10e-16 | 79.7 |
MsG0580027159.01.T01 | MTR_3g034180 | 27.234 | 235 | 126 | 9 | 1 | 221 | 216 | 419 | 1.15e-16 | 80.1 |
MsG0580027159.01.T01 | MTR_0054s0100 | 26.016 | 246 | 151 | 10 | 4 | 230 | 120 | 353 | 1.21e-16 | 79.7 |
MsG0580027159.01.T01 | MTR_5g057790 | 30.317 | 221 | 120 | 11 | 4 | 221 | 141 | 330 | 1.21e-16 | 79.7 |
MsG0580027159.01.T01 | MTR_2g046860 | 27.273 | 220 | 133 | 7 | 3 | 221 | 7 | 200 | 1.29e-16 | 79.0 |
MsG0580027159.01.T01 | MTR_0831s0010 | 28.346 | 254 | 133 | 12 | 8 | 244 | 153 | 374 | 1.47e-16 | 79.7 |
MsG0580027159.01.T01 | MTR_6g053260 | 27.397 | 219 | 127 | 9 | 3 | 219 | 434 | 622 | 1.60e-16 | 80.1 |
MsG0580027159.01.T01 | MTR_1g055135 | 29.778 | 225 | 122 | 9 | 1 | 217 | 105 | 301 | 2.41e-16 | 79.0 |
MsG0580027159.01.T01 | MTR_1g097330 | 27.706 | 231 | 127 | 10 | 2 | 226 | 106 | 302 | 2.60e-16 | 79.0 |
MsG0580027159.01.T01 | MTR_4g028660 | 26.172 | 256 | 160 | 11 | 16 | 255 | 123 | 365 | 3.10e-16 | 78.6 |
MsG0580027159.01.T01 | MTR_4g027450 | 26.172 | 256 | 160 | 11 | 16 | 255 | 123 | 365 | 3.10e-16 | 78.6 |
MsG0580027159.01.T01 | MTR_6g060650 | 27.397 | 292 | 147 | 14 | 6 | 266 | 113 | 370 | 3.46e-16 | 78.2 |
MsG0580027159.01.T01 | MTR_4g117750 | 29.808 | 208 | 123 | 4 | 26 | 226 | 104 | 295 | 3.87e-16 | 78.6 |
MsG0580027159.01.T01 | MTR_6g086825 | 27.203 | 261 | 149 | 13 | 4 | 244 | 174 | 413 | 4.27e-16 | 78.6 |
MsG0580027159.01.T01 | MTR_2g029990 | 27.064 | 218 | 129 | 9 | 3 | 219 | 148 | 336 | 4.60e-16 | 78.2 |
MsG0580027159.01.T01 | MTR_7g070440 | 25.681 | 257 | 164 | 11 | 3 | 244 | 95 | 339 | 5.07e-16 | 77.8 |
MsG0580027159.01.T01 | MTR_4g117720 | 28.226 | 248 | 140 | 10 | 5 | 242 | 110 | 329 | 5.17e-16 | 77.8 |
MsG0580027159.01.T01 | MTR_3g083640 | 29.108 | 213 | 113 | 10 | 6 | 218 | 157 | 331 | 5.46e-16 | 77.8 |
MsG0580027159.01.T01 | MTR_4g028680 | 24.706 | 255 | 165 | 8 | 16 | 255 | 124 | 366 | 6.36e-16 | 77.8 |
MsG0580027159.01.T01 | MTR_7g445890 | 25.641 | 234 | 138 | 8 | 2 | 218 | 86 | 300 | 7.30e-16 | 77.4 |
MsG0580027159.01.T01 | MTR_2g078870 | 26.852 | 216 | 121 | 11 | 4 | 219 | 56 | 234 | 7.31e-16 | 76.6 |
MsG0580027159.01.T01 | MTR_8g064890 | 26.606 | 218 | 129 | 8 | 16 | 221 | 125 | 323 | 8.71e-16 | 77.4 |
MsG0580027159.01.T01 | MTR_6g004660 | 27.027 | 222 | 135 | 9 | 3 | 221 | 117 | 314 | 8.95e-16 | 77.0 |
MsG0580027159.01.T01 | MTR_1g054575 | 30.263 | 152 | 94 | 3 | 67 | 218 | 189 | 328 | 1.03e-15 | 77.8 |
MsG0580027159.01.T01 | MTR_6g004210 | 27.234 | 235 | 130 | 11 | 3 | 221 | 129 | 338 | 1.31e-15 | 77.0 |
MsG0580027159.01.T01 | MTR_1g097560 | 26.667 | 225 | 126 | 10 | 3 | 226 | 129 | 315 | 1.32e-15 | 76.6 |
MsG0580027159.01.T01 | MTR_5g096630 | 25.652 | 230 | 142 | 11 | 9 | 221 | 123 | 340 | 1.59e-15 | 76.6 |
MsG0580027159.01.T01 | MTR_1g050542 | 26.484 | 219 | 128 | 7 | 2 | 218 | 145 | 332 | 1.77e-15 | 76.3 |
MsG0580027159.01.T01 | MTR_8g063370 | 25.243 | 309 | 169 | 18 | 9 | 289 | 119 | 393 | 2.12e-15 | 76.3 |
MsG0580027159.01.T01 | MTR_1g055375 | 25.893 | 224 | 131 | 8 | 2 | 221 | 104 | 296 | 3.05e-15 | 75.5 |
MsG0580027159.01.T01 | MTR_3g034160 | 26.180 | 233 | 131 | 9 | 1 | 221 | 102 | 305 | 3.67e-15 | 75.5 |
MsG0580027159.01.T01 | MTR_2g022000 | 27.615 | 239 | 134 | 9 | 10 | 221 | 126 | 352 | 3.90e-15 | 75.5 |
MsG0580027159.01.T01 | MTR_4g109270 | 25.839 | 298 | 153 | 13 | 1 | 266 | 100 | 361 | 4.34e-15 | 75.1 |
MsG0580027159.01.T01 | MTR_3g030330 | 27.854 | 219 | 114 | 10 | 3 | 219 | 118 | 294 | 4.41e-15 | 75.1 |
MsG0580027159.01.T01 | MTR_7g013590 | 28.000 | 225 | 130 | 10 | 3 | 221 | 126 | 324 | 4.98e-15 | 75.1 |
MsG0580027159.01.T01 | MTR_3g030320 | 25.792 | 221 | 124 | 10 | 4 | 221 | 44 | 227 | 5.83e-15 | 73.9 |
MsG0580027159.01.T01 | MTR_3g030350 | 26.027 | 219 | 129 | 8 | 4 | 221 | 130 | 316 | 7.73e-15 | 74.3 |
MsG0580027159.01.T01 | MTR_5g097210 | 29.956 | 227 | 120 | 9 | 1 | 221 | 100 | 293 | 8.56e-15 | 74.3 |
MsG0580027159.01.T01 | MTR_3g024150 | 30.256 | 195 | 99 | 11 | 31 | 221 | 155 | 316 | 1.80e-14 | 73.2 |
MsG0580027159.01.T01 | MTR_3g036335 | 27.679 | 224 | 118 | 12 | 4 | 221 | 141 | 326 | 1.81e-14 | 73.6 |
MsG0580027159.01.T01 | MTR_7g009265 | 27.234 | 235 | 133 | 10 | 3 | 221 | 31 | 243 | 1.89e-14 | 72.8 |
MsG0580027159.01.T01 | MTR_3g006640 | 27.542 | 236 | 119 | 11 | 4 | 221 | 19 | 220 | 2.42e-14 | 72.4 |
MsG0580027159.01.T01 | MTR_5g056990 | 32.716 | 162 | 91 | 8 | 62 | 221 | 30 | 175 | 2.60e-14 | 71.2 |
MsG0580027159.01.T01 | MTR_2g046920 | 25.909 | 220 | 131 | 7 | 3 | 221 | 119 | 307 | 2.88e-14 | 72.8 |
MsG0580027159.01.T01 | MTR_0129s0070 | 25.200 | 250 | 152 | 11 | 29 | 257 | 136 | 371 | 3.18e-14 | 72.8 |
MsG0580027159.01.T01 | MTR_3g010920 | 26.639 | 244 | 130 | 10 | 1 | 244 | 138 | 332 | 3.26e-14 | 72.4 |
MsG0580027159.01.T01 | MTR_3g011020 | 30.189 | 159 | 95 | 5 | 68 | 221 | 158 | 305 | 3.38e-14 | 72.4 |
MsG0580027159.01.T01 | MTR_1g088120 | 27.530 | 247 | 123 | 11 | 3 | 221 | 107 | 325 | 3.60e-14 | 72.4 |
MsG0580027159.01.T01 | MTR_7g077070 | 27.273 | 242 | 133 | 9 | 2 | 221 | 121 | 341 | 4.12e-14 | 72.4 |
MsG0580027159.01.T01 | MTR_3g007390 | 27.673 | 159 | 98 | 5 | 66 | 221 | 1 | 145 | 4.60e-14 | 70.1 |
MsG0580027159.01.T01 | MTR_4g019990 | 24.390 | 246 | 150 | 7 | 3 | 235 | 108 | 330 | 4.99e-14 | 72.0 |
MsG0580027159.01.T01 | MTR_4g030830 | 27.615 | 239 | 131 | 10 | 5 | 228 | 112 | 323 | 6.73e-14 | 71.6 |
MsG0580027159.01.T01 | MTR_1g054725 | 27.511 | 229 | 117 | 10 | 3 | 218 | 115 | 307 | 6.80e-14 | 71.6 |
MsG0580027159.01.T01 | MTR_4g021785 | 26.587 | 252 | 134 | 10 | 5 | 244 | 104 | 316 | 8.40e-14 | 71.2 |
MsG0580027159.01.T01 | MTR_7g007300 | 26.786 | 224 | 113 | 9 | 2 | 221 | 202 | 378 | 1.23e-13 | 71.2 |
MsG0580027159.01.T01 | MTR_5g043605 | 27.234 | 235 | 145 | 12 | 1 | 230 | 72 | 285 | 1.80e-13 | 70.5 |
MsG0580027159.01.T01 | MTR_2g078850 | 26.364 | 220 | 122 | 11 | 4 | 219 | 128 | 311 | 2.10e-13 | 70.1 |
MsG0580027159.01.T01 | MTR_3g007300 | 28.959 | 221 | 106 | 10 | 3 | 221 | 131 | 302 | 2.12e-13 | 70.1 |
MsG0580027159.01.T01 | MTR_3g030240 | 27.225 | 191 | 99 | 8 | 31 | 221 | 158 | 308 | 2.19e-13 | 70.1 |
MsG0580027159.01.T01 | MTR_1g097490 | 27.111 | 225 | 131 | 9 | 3 | 226 | 142 | 334 | 2.24e-13 | 70.1 |
MsG0580027159.01.T01 | MTR_3g010590 | 28.272 | 191 | 100 | 10 | 31 | 221 | 157 | 310 | 2.37e-13 | 70.1 |
MsG0580027159.01.T01 | MTR_5g096910 | 26.977 | 215 | 125 | 10 | 16 | 221 | 135 | 326 | 2.60e-13 | 70.1 |
MsG0580027159.01.T01 | MTR_4g023080 | 27.092 | 251 | 133 | 12 | 5 | 244 | 104 | 315 | 2.69e-13 | 69.7 |
MsG0580027159.01.T01 | MTR_8g033090 | 24.710 | 259 | 127 | 10 | 16 | 230 | 123 | 357 | 2.78e-13 | 70.1 |
MsG0580027159.01.T01 | MTR_5g097680 | 25.238 | 210 | 137 | 8 | 30 | 221 | 158 | 365 | 3.10e-13 | 69.7 |
MsG0580027159.01.T01 | MTR_4g107780 | 27.426 | 237 | 125 | 10 | 1 | 229 | 128 | 325 | 3.28e-13 | 69.7 |
MsG0580027159.01.T01 | MTR_4g107820 | 27.426 | 237 | 125 | 10 | 1 | 229 | 128 | 325 | 3.31e-13 | 69.7 |
MsG0580027159.01.T01 | MTR_8g033140 | 27.016 | 248 | 115 | 13 | 16 | 221 | 129 | 352 | 3.40e-13 | 69.7 |
MsG0580027159.01.T01 | MTR_4g107820 | 27.426 | 237 | 125 | 10 | 1 | 229 | 128 | 325 | 3.77e-13 | 69.3 |
MsG0580027159.01.T01 | MTR_4g107780 | 27.426 | 237 | 125 | 10 | 1 | 229 | 128 | 325 | 3.77e-13 | 69.3 |
MsG0580027159.01.T01 | MTR_4g030090 | 24.506 | 253 | 142 | 10 | 3 | 235 | 111 | 334 | 5.44e-13 | 68.9 |
MsG0580027159.01.T01 | MTR_5g074850 | 24.800 | 250 | 138 | 10 | 5 | 225 | 134 | 362 | 5.55e-13 | 69.7 |
MsG0580027159.01.T01 | MTR_3g006530 | 25.229 | 218 | 121 | 11 | 6 | 219 | 147 | 326 | 7.49e-13 | 68.6 |
MsG0580027159.01.T01 | MTR_2g104280 | 25.296 | 253 | 154 | 10 | 16 | 243 | 125 | 367 | 8.15e-13 | 68.6 |
MsG0580027159.01.T01 | MTR_4g094365 | 31.111 | 270 | 127 | 15 | 29 | 265 | 117 | 360 | 8.76e-13 | 68.2 |
MsG0580027159.01.T01 | MTR_5g010550 | 28.390 | 236 | 140 | 11 | 2 | 229 | 186 | 400 | 1.12e-12 | 68.2 |
MsG0580027159.01.T01 | MTR_4g055820 | 25.794 | 252 | 151 | 9 | 13 | 244 | 121 | 356 | 1.16e-12 | 67.8 |
MsG0580027159.01.T01 | MTR_4g132560 | 27.103 | 214 | 131 | 9 | 31 | 235 | 10 | 207 | 1.38e-12 | 66.6 |
MsG0580027159.01.T01 | MTR_5g010550 | 28.390 | 236 | 140 | 11 | 2 | 229 | 172 | 386 | 1.39e-12 | 68.2 |
MsG0580027159.01.T01 | MTR_5g086590 | 25.000 | 204 | 129 | 9 | 24 | 221 | 9 | 194 | 1.40e-12 | 66.2 |
MsG0580027159.01.T01 | MTR_4g108820 | 25.333 | 225 | 121 | 9 | 2 | 221 | 106 | 288 | 1.87e-12 | 67.0 |
MsG0580027159.01.T01 | MTR_4g102410 | 22.845 | 232 | 147 | 8 | 6 | 221 | 169 | 384 | 2.15e-12 | 67.4 |
MsG0580027159.01.T01 | MTR_2g021800 | 26.389 | 216 | 122 | 7 | 31 | 221 | 150 | 353 | 2.32e-12 | 67.4 |
MsG0580027159.01.T01 | MTR_2g065860 | 26.000 | 200 | 129 | 7 | 29 | 221 | 136 | 323 | 2.62e-12 | 67.0 |
MsG0580027159.01.T01 | MTR_2g046830 | 29.870 | 154 | 95 | 4 | 68 | 221 | 168 | 308 | 2.93e-12 | 67.0 |
MsG0580027159.01.T01 | MTR_3g006500 | 25.263 | 190 | 105 | 7 | 31 | 219 | 145 | 298 | 3.80e-12 | 66.2 |
MsG0580027159.01.T01 | MTR_4g116330 | 25.086 | 291 | 161 | 12 | 7 | 266 | 113 | 377 | 3.86e-12 | 66.2 |
MsG0580027159.01.T01 | MTR_5g010560 | 26.496 | 234 | 147 | 9 | 1 | 229 | 171 | 384 | 3.96e-12 | 66.6 |
MsG0580027159.01.T01 | MTR_6g087620 | 26.570 | 207 | 120 | 8 | 22 | 221 | 42 | 223 | 4.68e-12 | 65.5 |
MsG0580027159.01.T01 | MTR_8g062660 | 26.522 | 230 | 124 | 12 | 5 | 221 | 118 | 315 | 6.41e-12 | 66.2 |
MsG0580027159.01.T01 | MTR_1g055065 | 25.397 | 252 | 142 | 10 | 4 | 241 | 19 | 238 | 7.24e-12 | 65.1 |
MsG0580027159.01.T01 | MTR_1g055195 | 26.923 | 234 | 117 | 11 | 1 | 222 | 219 | 410 | 7.39e-12 | 65.9 |
MsG0580027159.01.T01 | MTR_8g033110 | 24.621 | 264 | 138 | 9 | 5 | 230 | 119 | 359 | 1.01e-11 | 65.5 |
MsG0580027159.01.T01 | MTR_4g023380 | 23.432 | 303 | 153 | 12 | 5 | 266 | 112 | 376 | 1.08e-11 | 65.1 |
MsG0580027159.01.T01 | MTR_3g010430 | 27.074 | 229 | 111 | 8 | 6 | 219 | 133 | 320 | 1.14e-11 | 65.1 |
MsG0580027159.01.T01 | MTR_1g053510 | 24.896 | 241 | 128 | 9 | 16 | 224 | 125 | 344 | 1.14e-11 | 65.1 |
MsG0580027159.01.T01 | MTR_8g101580 | 28.700 | 223 | 125 | 14 | 3 | 221 | 138 | 330 | 1.22e-11 | 65.1 |
MsG0580027159.01.T01 | MTR_3g036430 | 26.087 | 207 | 116 | 8 | 16 | 219 | 99 | 271 | 1.53e-11 | 64.3 |
MsG0580027159.01.T01 | MTR_0134s0060 | 23.715 | 253 | 145 | 12 | 14 | 230 | 117 | 357 | 1.72e-11 | 64.7 |
MsG0580027159.01.T01 | MTR_2g047832 | 26.050 | 238 | 128 | 9 | 3 | 221 | 124 | 332 | 1.74e-11 | 64.7 |
MsG0580027159.01.T01 | MTR_7g066000 | 24.138 | 232 | 146 | 7 | 3 | 221 | 118 | 332 | 1.85e-11 | 64.3 |
MsG0580027159.01.T01 | MTR_7g079370 | 26.122 | 245 | 127 | 12 | 5 | 229 | 82 | 292 | 2.04e-11 | 64.3 |
MsG0580027159.01.T01 | MTR_7g078900 | 26.180 | 233 | 136 | 9 | 3 | 221 | 123 | 333 | 2.06e-11 | 64.3 |
MsG0580027159.01.T01 | MTR_5g097350 | 26.667 | 225 | 125 | 11 | 6 | 221 | 131 | 324 | 2.28e-11 | 64.3 |
MsG0580027159.01.T01 | MTR_7g079160 | 26.172 | 256 | 120 | 13 | 3 | 221 | 125 | 348 | 2.34e-11 | 64.3 |
MsG0580027159.01.T01 | MTR_8g018110 | 25.506 | 247 | 122 | 8 | 5 | 221 | 118 | 332 | 2.68e-11 | 63.9 |
MsG0580027159.01.T01 | MTR_6g017280 | 25.410 | 244 | 145 | 10 | 3 | 232 | 103 | 323 | 2.96e-11 | 63.9 |
MsG0580027159.01.T01 | MTR_6g016285 | 25.417 | 240 | 136 | 9 | 2 | 219 | 114 | 332 | 3.08e-11 | 63.9 |
MsG0580027159.01.T01 | MTR_2g461450 | 24.242 | 231 | 142 | 7 | 3 | 231 | 106 | 305 | 3.13e-11 | 63.5 |
MsG0580027159.01.T01 | MTR_2g104340 | 25.726 | 241 | 143 | 10 | 26 | 244 | 124 | 350 | 3.15e-11 | 63.9 |
MsG0580027159.01.T01 | MTR_2g021252 | 26.244 | 221 | 117 | 10 | 2 | 219 | 141 | 318 | 3.25e-11 | 63.5 |
MsG0580027159.01.T01 | MTR_7g028660 | 25.957 | 235 | 137 | 9 | 2 | 221 | 102 | 314 | 4.17e-11 | 63.2 |
MsG0580027159.01.T01 | MTR_4g024890 | 24.783 | 230 | 135 | 8 | 3 | 221 | 107 | 309 | 4.20e-11 | 63.2 |
MsG0580027159.01.T01 | MTR_4g122850 | 24.554 | 224 | 134 | 7 | 5 | 221 | 98 | 293 | 4.42e-11 | 63.2 |
MsG0580027159.01.T01 | MTR_2g066170 | 26.570 | 207 | 120 | 8 | 29 | 221 | 133 | 321 | 4.75e-11 | 63.2 |
MsG0580027159.01.T01 | MTR_5g046260 | 23.265 | 245 | 131 | 12 | 27 | 260 | 100 | 298 | 4.77e-11 | 62.8 |
MsG0580027159.01.T01 | MTR_5g092850 | 23.673 | 245 | 146 | 9 | 8 | 225 | 108 | 338 | 4.85e-11 | 63.2 |
MsG0580027159.01.T01 | MTR_6g078010 | 25.322 | 233 | 137 | 15 | 14 | 230 | 69 | 280 | 5.03e-11 | 62.8 |
MsG0580027159.01.T01 | MTR_5g010610 | 24.893 | 233 | 152 | 8 | 1 | 229 | 160 | 373 | 6.55e-11 | 63.2 |
MsG0580027159.01.T01 | MTR_4g117430 | 32.692 | 156 | 75 | 9 | 15 | 167 | 6 | 134 | 6.94e-11 | 60.1 |
MsG0580027159.01.T01 | MTR_2g021210 | 26.267 | 217 | 122 | 9 | 5 | 219 | 178 | 358 | 7.58e-11 | 62.8 |
MsG0580027159.01.T01 | MTR_8g039500 | 24.887 | 221 | 129 | 9 | 16 | 221 | 114 | 312 | 8.55e-11 | 62.4 |
MsG0580027159.01.T01 | MTR_3g080370 | 27.386 | 241 | 132 | 10 | 3 | 221 | 115 | 334 | 8.62e-11 | 62.4 |
MsG0580027159.01.T01 | MTR_4g118380 | 27.753 | 227 | 129 | 11 | 6 | 224 | 115 | 314 | 9.24e-11 | 62.0 |
MsG0580027159.01.T01 | MTR_2g065840 | 27.004 | 237 | 146 | 11 | 16 | 244 | 123 | 340 | 9.29e-11 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580027159.01.T01 | AT4G12560 | 30.612 | 343 | 165 | 10 | 3 | 292 | 91 | 413 | 8.74e-38 | 138 |
MsG0580027159.01.T01 | AT4G12560 | 30.612 | 343 | 165 | 10 | 3 | 292 | 91 | 413 | 8.74e-38 | 138 |
MsG0580027159.01.T01 | AT4G12560 | 30.612 | 343 | 165 | 10 | 3 | 292 | 91 | 413 | 8.74e-38 | 138 |
MsG0580027159.01.T01 | AT4G22390 | 27.811 | 338 | 169 | 11 | 3 | 292 | 91 | 401 | 1.12e-25 | 105 |
MsG0580027159.01.T01 | AT4G22390 | 28.024 | 339 | 168 | 12 | 3 | 292 | 91 | 402 | 7.13e-24 | 100 |
MsG0580027159.01.T01 | AT3G06240 | 31.081 | 222 | 120 | 10 | 1 | 218 | 163 | 355 | 2.69e-20 | 90.5 |
MsG0580027159.01.T01 | AT3G07870 | 27.083 | 240 | 124 | 11 | 3 | 221 | 119 | 328 | 6.23e-13 | 68.9 |
MsG0580027159.01.T01 | AT3G16210 | 29.493 | 217 | 112 | 12 | 16 | 228 | 97 | 276 | 2.42e-11 | 63.9 |
Find 63 sgRNAs with CRISPR-Local
Find 99 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCCTTTCCTGATGATAATTT+TGG | 0.048307 | 5:-54979126 | MsG0580027159.01.T01:CDS |
TTAAAATCTTCAAGGCTTAT+AGG | 0.203872 | 5:-54979293 | MsG0580027159.01.T01:CDS |
CTGGATTATGACTCGGAAAA+TGG | 0.265916 | 5:-54979582 | MsG0580027159.01.T01:CDS |
ATCATAGCTTGATGCAAATT+AGG | 0.294176 | 5:+54979174 | None:intergenic |
CGCTTCTCCTTATGTGTTCA+CGG | 0.297299 | 5:-54979800 | MsG0580027159.01.T01:CDS |
ATCTGTTTCACGCATCCTTA+TGG | 0.315196 | 5:-54979929 | MsG0580027159.01.T01:CDS |
TCCTTATGTGTTCACGGCTT+CGG | 0.326701 | 5:-54979794 | MsG0580027159.01.T01:CDS |
CTTCACCTTTAAAATCTTCA+AGG | 0.349372 | 5:-54979301 | MsG0580027159.01.T01:CDS |
AAACTACTAAAATTGATGTT+TGG | 0.356359 | 5:-54979391 | MsG0580027159.01.T01:CDS |
GTTTGGGTGATGAAAGAATA+TGG | 0.365045 | 5:-54979374 | MsG0580027159.01.T01:CDS |
CATTGAAAATCTCAAGTGTT+AGG | 0.366829 | 5:+54979525 | None:intergenic |
GGATTTAAGTTGAGATTGTA+AGG | 0.383532 | 5:-54978612 | None:intergenic |
GGAATAGGAAGAGGTAGAAA+AGG | 0.383823 | 5:+54979854 | None:intergenic |
TCGGAGGAGTTTATAATCTC+TGG | 0.391159 | 5:+54979757 | None:intergenic |
AACTACTAAAATTGATGTTT+GGG | 0.401477 | 5:-54979390 | MsG0580027159.01.T01:CDS |
TTGTTGAGAATTCTCTTCAC+TGG | 0.404513 | 5:-54979601 | MsG0580027159.01.T01:CDS |
ATAAACTCCTCCGAATATCT+TGG | 0.408973 | 5:-54979748 | MsG0580027159.01.T01:CDS |
GTGATTTCGTTGGCGCCATA+AGG | 0.420362 | 5:+54979914 | None:intergenic |
AGTTTATAATCTCTGGATAA+AGG | 0.420388 | 5:+54979764 | None:intergenic |
AAGGATGCGTGAAACAGATT+TGG | 0.422401 | 5:+54979933 | None:intergenic |
AACACCTATATGGCTCTTAT+CGG | 0.426155 | 5:-54979989 | None:intergenic |
CCTCTTCCTGCTGAAATAGA+AGG | 0.430840 | 5:-54979497 | MsG0580027159.01.T01:CDS |
TCGAGCATGATGTTAGGAAT+AGG | 0.455785 | 5:+54979839 | None:intergenic |
TCAGATTCGAGCATGATGTT+AGG | 0.458036 | 5:+54979833 | None:intergenic |
GAGTGACTAACCAAGATATT+CGG | 0.464774 | 5:+54979738 | None:intergenic |
GAATAGGAAGAGGTAGAAAA+GGG | 0.467507 | 5:+54979855 | None:intergenic |
CTTAGCTTTGTTCCAACCGT+GGG | 0.471422 | 5:-54979629 | MsG0580027159.01.T01:CDS |
CTCTTCACTGGATTATGACT+CGG | 0.472624 | 5:-54979589 | MsG0580027159.01.T01:CDS |
ACCGAAGCCGTGAACACATA+AGG | 0.478330 | 5:+54979793 | None:intergenic |
TCCTTCCCAAAATTATCATC+AGG | 0.481690 | 5:+54979120 | None:intergenic |
ACAGGGATGACTTCTTGTCC+CGG | 0.484818 | 5:-54978635 | MsG0580027159.01.T01:intron |
CCTTCTATTTCAGCAGGAAG+AGG | 0.490143 | 5:+54979497 | None:intergenic |
GTTCCAGATTGTGATTTCGT+TGG | 0.498468 | 5:+54979904 | None:intergenic |
TCTTCACCTTCTATTTCAGC+AGG | 0.505800 | 5:+54979491 | None:intergenic |
CAGGGATGACTTCTTGTCCC+GGG | 0.511970 | 5:-54978634 | MsG0580027159.01.T01:CDS |
GCGCCAACGAAATCACAATC+TGG | 0.517989 | 5:-54979907 | MsG0580027159.01.T01:CDS |
TCAGCTCTAAAACAAATTCG+TGG | 0.519610 | 5:-54979679 | MsG0580027159.01.T01:CDS |
GAAGGTGAAGAGGTTAACAA+TGG | 0.526838 | 5:-54979479 | MsG0580027159.01.T01:CDS |
ATGATGTTAGGAATAGGAAG+AGG | 0.531411 | 5:+54979845 | None:intergenic |
GGCCTCATTGCTATCTCCAT+TGG | 0.533009 | 5:-54979956 | MsG0580027159.01.T01:CDS |
GCTCTTATCGGTTCATGCAA+CGG | 0.535891 | 5:-54979977 | MsG0580027159.01.T01:CDS |
CCCAAAATTATCATCAGGAA+AGG | 0.539440 | 5:+54979125 | None:intergenic |
CTTATAGGTTATTCTTGTGA+CGG | 0.546199 | 5:-54979278 | MsG0580027159.01.T01:CDS |
AAGGTGAAGAGGTTAACAAT+GGG | 0.547467 | 5:-54979478 | MsG0580027159.01.T01:CDS |
ACAATCTCAACTTAAATCCC+CGG | 0.559340 | 5:+54978616 | None:intergenic |
CGTGAAACAGATTTGGCCAA+TGG | 0.559767 | 5:+54979940 | None:intergenic |
TCTTAGCTTTGTTCCAACCG+TGG | 0.569678 | 5:-54979630 | MsG0580027159.01.T01:CDS |
AATATGGTTCTAGAGATAGT+TGG | 0.584921 | 5:-54979358 | MsG0580027159.01.T01:CDS |
TGCTGAAATAGAAGGTGAAG+AGG | 0.586302 | 5:-54979489 | MsG0580027159.01.T01:CDS |
CAATCTCAACTTAAATCCCC+GGG | 0.594607 | 5:+54978617 | None:intergenic |
GATTTAAGTTGAGATTGTAA+GGG | 0.595921 | 5:-54978611 | None:intergenic |
AAATTATCATCAGGAAAGGA+AGG | 0.598307 | 5:+54979129 | None:intergenic |
AGGGATGACTTCTTGTCCCG+GGG | 0.606359 | 5:-54978633 | MsG0580027159.01.T01:CDS |
TTAGCTTTGTTCCAACCGTG+GGG | 0.610084 | 5:-54979628 | MsG0580027159.01.T01:CDS |
ATACGATGTTTACGAGTGTG+AGG | 0.621734 | 5:+54979881 | None:intergenic |
TACGATGTTTACGAGTGTGA+GGG | 0.622269 | 5:+54979882 | None:intergenic |
TAGCTTTGTTCCAACCGTGG+GGG | 0.638572 | 5:-54979627 | MsG0580027159.01.T01:CDS |
GTACAAGCAAGAGCAAGAGA+AGG | 0.658263 | 5:-54979089 | MsG0580027159.01.T01:intron |
TAAACGCAACAATGAAACAA+AGG | 0.659209 | 5:+54979549 | None:intergenic |
TTATCATCAGGAAAGGAAGG+TGG | 0.663582 | 5:+54979132 | None:intergenic |
GGAACAAAGCTAAGATCGTG+CGG | 0.675695 | 5:+54979638 | None:intergenic |
TGACTAACCAAGATATTCGG+AGG | 0.676084 | 5:+54979741 | None:intergenic |
GGCCAATGGAGATAGCAATG+AGG | 0.730070 | 5:+54979954 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | GAAAATTGTTATTTAAAAAT+TGG | - | Chr5:54979873-54979892 | MsG0580027159.01.T01:CDS | 10.0% |
!!! | ATTAATTTTTTTTTTTCCAC+AGG | - | Chr5:54979941-54979960 | MsG0580027159.01.T01:CDS | 15.0% |
!!! | TTAATTTTTTTTTTTCCACA+GGG | - | Chr5:54979942-54979961 | MsG0580027159.01.T01:CDS | 15.0% |
!! | AAACTACTAAAATTGATGTT+TGG | - | Chr5:54979203-54979222 | MsG0580027159.01.T01:intron | 20.0% |
!! | AACTACTAAAATTGATGTTT+GGG | - | Chr5:54979204-54979223 | MsG0580027159.01.T01:intron | 20.0% |
!! | AACTGCATATATCATATTAT+GGG | + | Chr5:54979594-54979613 | None:intergenic | 20.0% |
!! | TAACTGCATATATCATATTA+TGG | + | Chr5:54979595-54979614 | None:intergenic | 20.0% |
!! | TCAAATAGTATTCTCATTAT+AGG | - | Chr5:54979631-54979650 | MsG0580027159.01.T01:CDS | 20.0% |
!!! | GAATCATAAAAAAAGTTTTG+TGG | + | Chr5:54978881-54978900 | None:intergenic | 20.0% |
! | AGTTTATAATCTCTGGATAA+AGG | + | Chr5:54978833-54978852 | None:intergenic | 25.0% |
! | ATAAGTTAATGTCAGTTCAA+TGG | - | Chr5:54979567-54979586 | MsG0580027159.01.T01:CDS | 25.0% |
! | CTTGGTCAACATAATTATTT+AGG | + | Chr5:54979802-54979821 | None:intergenic | 25.0% |
! | TGTCACATATACATAAACAA+AGG | + | Chr5:54979689-54979708 | None:intergenic | 25.0% |
! | TTAAAATCTTCAAGGCTTAT+AGG | - | Chr5:54979301-54979320 | MsG0580027159.01.T01:CDS | 25.0% |
!! | ATAAGCCTTGAAGATTTTAA+AGG | + | Chr5:54979301-54979320 | None:intergenic | 25.0% |
!! | GAATTAAATAAGAGCTGTTT+TGG | - | Chr5:54979355-54979374 | MsG0580027159.01.T01:CDS | 25.0% |
!! | TTGGTGTAAACTTTTTACTT+TGG | - | Chr5:54979255-54979274 | MsG0580027159.01.T01:intron | 25.0% |
!!! | AAAAAATGCTGTTGCTATTT+TGG | - | Chr5:54979150-54979169 | MsG0580027159.01.T01:CDS | 25.0% |
!!! | AAAAATGCTGTTGCTATTTT+GGG | - | Chr5:54979151-54979170 | MsG0580027159.01.T01:CDS | 25.0% |
AAATTATCATCAGGAAAGGA+AGG | + | Chr5:54979468-54979487 | None:intergenic | 30.0% | |
AGTATTCTCATTATAGGACA+AGG | - | Chr5:54979637-54979656 | MsG0580027159.01.T01:CDS | 30.0% | |
ATCATAGCTTGATGCAAATT+AGG | + | Chr5:54979423-54979442 | None:intergenic | 30.0% | |
CATTGAAAATCTCAAGTGTT+AGG | + | Chr5:54979072-54979091 | None:intergenic | 30.0% | |
CTCAACAATCAGAAATAACT+TGG | + | Chr5:54979820-54979839 | None:intergenic | 30.0% | |
CTTATAGGTTATTCTTGTGA+CGG | - | Chr5:54979316-54979335 | MsG0580027159.01.T01:CDS | 30.0% | |
TAAACGCAACAATGAAACAA+AGG | + | Chr5:54979048-54979067 | None:intergenic | 30.0% | |
! | AACACTTGAGATTTTCAATG+TGG | - | Chr5:54979072-54979091 | MsG0580027159.01.T01:intron | 30.0% |
! | CCTTTCCTGATGATAATTTT+GGG | - | Chr5:54979469-54979488 | MsG0580027159.01.T01:CDS | 30.0% |
! | TCCTTTCCTGATGATAATTT+TGG | - | Chr5:54979468-54979487 | MsG0580027159.01.T01:CDS | 30.0% |
! | TTAAAAATTGGCCTACCATA+GGG | - | Chr5:54979885-54979904 | MsG0580027159.01.T01:CDS | 30.0% |
! | TTTAAAAATTGGCCTACCAT+AGG | - | Chr5:54979884-54979903 | MsG0580027159.01.T01:CDS | 30.0% |
!! | AATATGGTTCTAGAGATAGT+TGG | - | Chr5:54979236-54979255 | MsG0580027159.01.T01:intron | 30.0% |
!! | CTTCACCTTTAAAATCTTCA+AGG | - | Chr5:54979293-54979312 | MsG0580027159.01.T01:CDS | 30.0% |
!!! | TTTTGGTTTGATTTGAAGAG+TGG | - | Chr5:54979372-54979391 | MsG0580027159.01.T01:CDS | 30.0% |
AAGGTGAAGAGGTTAACAAT+GGG | - | Chr5:54979116-54979135 | MsG0580027159.01.T01:CDS | 35.0% | |
ACAATCTCAACTTAAATCCC+CGG | + | Chr5:54979981-54980000 | None:intergenic | 35.0% | |
ATAAACTCCTCCGAATATCT+TGG | - | Chr5:54978846-54978865 | MsG0580027159.01.T01:intron | 35.0% | |
ATGATGTTAGGAATAGGAAG+AGG | + | Chr5:54978752-54978771 | None:intergenic | 35.0% | |
CCCAAAATTATCATCAGGAA+AGG | + | Chr5:54979472-54979491 | None:intergenic | 35.0% | |
GAATAGGAAGAGGTAGAAAA+GGG | + | Chr5:54978742-54978761 | None:intergenic | 35.0% | |
GAGTGACTAACCAAGATATT+CGG | + | Chr5:54978859-54978878 | None:intergenic | 35.0% | |
GGACAAGTTAGTTATGTTGA+AGG | - | Chr5:54979393-54979412 | MsG0580027159.01.T01:CDS | 35.0% | |
GTTTGGGTGATGAAAGAATA+TGG | - | Chr5:54979220-54979239 | MsG0580027159.01.T01:intron | 35.0% | |
TCCTTCCCAAAATTATCATC+AGG | + | Chr5:54979477-54979496 | None:intergenic | 35.0% | |
TTGTTGAGAATTCTCTTCAC+TGG | - | Chr5:54978993-54979012 | MsG0580027159.01.T01:intron | 35.0% | |
TTTCACCACTTTACATACCA+CGG | + | Chr5:54979857-54979876 | None:intergenic | 35.0% | |
! | TTATTCTTGTGACGGAAGTA+AGG | - | Chr5:54979324-54979343 | MsG0580027159.01.T01:CDS | 35.0% |
!! | TCAGCTCTAAAACAAATTCG+TGG | - | Chr5:54978915-54978934 | MsG0580027159.01.T01:intron | 35.0% |
!! | TCCTGATGATAATTTTGGGA+AGG | - | Chr5:54979473-54979492 | MsG0580027159.01.T01:CDS | 35.0% |
!! | TGATGATAATTTTGGGAAGG+AGG | - | Chr5:54979476-54979495 | MsG0580027159.01.T01:CDS | 35.0% |
AAGGATGCGTGAAACAGATT+TGG | + | Chr5:54978664-54978683 | None:intergenic | 40.0% | |
ATACGATGTTTACGAGTGTG+AGG | + | Chr5:54978716-54978735 | None:intergenic | 40.0% | |
ATCTGTTTCACGCATCCTTA+TGG | - | Chr5:54978665-54978684 | MsG0580027159.01.T01:intron | 40.0% | |
ATTCTCAACAAAAACCCCCA+CGG | + | Chr5:54978984-54979003 | None:intergenic | 40.0% | |
CAATCTCAACTTAAATCCCC+GGG | + | Chr5:54979980-54979999 | None:intergenic | 40.0% | |
CTCTTCACTGGATTATGACT+CGG | - | Chr5:54979005-54979024 | MsG0580027159.01.T01:intron | 40.0% | |
GAAGGTGAAGAGGTTAACAA+TGG | - | Chr5:54979115-54979134 | MsG0580027159.01.T01:CDS | 40.0% | |
GGAATAGGAAGAGGTAGAAA+AGG | + | Chr5:54978743-54978762 | None:intergenic | 40.0% | |
GTTCCAGATTGTGATTTCGT+TGG | + | Chr5:54978693-54978712 | None:intergenic | 40.0% | |
TACGATGTTTACGAGTGTGA+GGG | + | Chr5:54978715-54978734 | None:intergenic | 40.0% | |
TCAGATTCGAGCATGATGTT+AGG | + | Chr5:54978764-54978783 | None:intergenic | 40.0% | |
TCGAGCATGATGTTAGGAAT+AGG | + | Chr5:54978758-54978777 | None:intergenic | 40.0% | |
TCGGAGGAGTTTATAATCTC+TGG | + | Chr5:54978840-54978859 | None:intergenic | 40.0% | |
TCTTCACCTTCTATTTCAGC+AGG | + | Chr5:54979106-54979125 | None:intergenic | 40.0% | |
TGACTAACCAAGATATTCGG+AGG | + | Chr5:54978856-54978875 | None:intergenic | 40.0% | |
TGCTGAAATAGAAGGTGAAG+AGG | - | Chr5:54979105-54979124 | MsG0580027159.01.T01:CDS | 40.0% | |
TTATCATCAGGAAAGGAAGG+TGG | + | Chr5:54979465-54979484 | None:intergenic | 40.0% | |
! | CTGGATTATGACTCGGAAAA+TGG | - | Chr5:54979012-54979031 | MsG0580027159.01.T01:intron | 40.0% |
!!! | AATGCTGTTGCTATTTTGGG+AGG | - | Chr5:54979154-54979173 | MsG0580027159.01.T01:CDS | 40.0% |
CCTCTTCCTGCTGAAATAGA+AGG | - | Chr5:54979097-54979116 | MsG0580027159.01.T01:CDS | 45.0% | |
CCTTCTATTTCAGCAGGAAG+AGG | + | Chr5:54979100-54979119 | None:intergenic | 45.0% | |
CGCTTCTCCTTATGTGTTCA+CGG | - | Chr5:54978794-54978813 | MsG0580027159.01.T01:intron | 45.0% | |
CGTGAAACAGATTTGGCCAA+TGG | + | Chr5:54978657-54978676 | None:intergenic | 45.0% | |
GGAACAAAGCTAAGATCGTG+CGG | + | Chr5:54978959-54978978 | None:intergenic | 45.0% | |
GTACAAGCAAGAGCAAGAGA+AGG | - | Chr5:54979505-54979524 | MsG0580027159.01.T01:CDS | 45.0% | |
TATCACAGAAGTCGTCCCTA+TGG | + | Chr5:54979903-54979922 | None:intergenic | 45.0% | |
TCCTTATGTGTTCACGGCTT+CGG | - | Chr5:54978800-54978819 | MsG0580027159.01.T01:intron | 45.0% | |
!! | CTTAGCTTTGTTCCAACCGT+GGG | - | Chr5:54978965-54978984 | MsG0580027159.01.T01:intron | 45.0% |
!! | GCTCTTATCGGTTCATGCAA+CGG | - | Chr5:54978617-54978636 | MsG0580027159.01.T01:CDS | 45.0% |
!! | TCTTAGCTTTGTTCCAACCG+TGG | - | Chr5:54978964-54978983 | MsG0580027159.01.T01:intron | 45.0% |
!! | TTAGCTTTGTTCCAACCGTG+GGG | - | Chr5:54978966-54978985 | MsG0580027159.01.T01:intron | 45.0% |
ACAGAAGTCGTCCCTATGGT+AGG | + | Chr5:54979899-54979918 | None:intergenic | 50.0% | |
ACAGGGATGACTTCTTGTCC+CGG | - | Chr5:54979959-54979978 | MsG0580027159.01.T01:CDS | 50.0% | |
ACCACTTTACATACCACGGC+AGG | + | Chr5:54979853-54979872 | None:intergenic | 50.0% | |
ACCGAAGCCGTGAACACATA+AGG | + | Chr5:54978804-54978823 | None:intergenic | 50.0% | |
CCACTTTACATACCACGGCA+GGG | + | Chr5:54979852-54979871 | None:intergenic | 50.0% | |
GCGCCAACGAAATCACAATC+TGG | - | Chr5:54978687-54978706 | MsG0580027159.01.T01:intron | 50.0% | |
GGCCAATGGAGATAGCAATG+AGG | + | Chr5:54978643-54978662 | None:intergenic | 50.0% | |
GGCCTCATTGCTATCTCCAT+TGG | - | Chr5:54978638-54978657 | MsG0580027159.01.T01:intron | 50.0% | |
GTGATTTCGTTGGCGCCATA+AGG | + | Chr5:54978683-54978702 | None:intergenic | 50.0% | |
TCAACAAAAACCCCCACGGT+TGG | + | Chr5:54978980-54978999 | None:intergenic | 50.0% | |
TGACGGAAGTAAGGCTCTGT+TGG | - | Chr5:54979333-54979352 | MsG0580027159.01.T01:CDS | 50.0% | |
!! | TAGCTTTGTTCCAACCGTGG+GGG | - | Chr5:54978967-54978986 | MsG0580027159.01.T01:intron | 50.0% |
AGGGATGACTTCTTGTCCCG+GGG | - | Chr5:54979961-54979980 | MsG0580027159.01.T01:CDS | 55.0% | |
CAGGGATGACTTCTTGTCCC+GGG | - | Chr5:54979960-54979979 | MsG0580027159.01.T01:CDS | 55.0% | |
CCCTGCCGTGGTATGTAAAG+TGG | - | Chr5:54979849-54979868 | MsG0580027159.01.T01:CDS | 55.0% | |
CTTTACATACCACGGCAGGG+TGG | + | Chr5:54979849-54979868 | None:intergenic | 55.0% | |
GGGACAAGAAGTCATCCCTG+TGG | + | Chr5:54979960-54979979 | None:intergenic | 55.0% | |
GAGACAATTCCACCCTGCCG+TGG | - | Chr5:54979837-54979856 | MsG0580027159.01.T01:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr5 | gene | 54978614 | 54980002 | 54978614 | ID=MsG0580027159.01;Name=MsG0580027159.01 |
Chr5 | mRNA | 54978614 | 54980002 | 54978614 | ID=MsG0580027159.01.T01;Parent=MsG0580027159.01;Name=MsG0580027159.01.T01;_AED=0.34;_eAED=0.34;_QI=0|0|0|1|1|1|3|0|292 |
Chr5 | exon | 54979276 | 54980002 | 54979276 | ID=MsG0580027159.01.T01:exon:41439;Parent=MsG0580027159.01.T01 |
Chr5 | exon | 54979090 | 54979201 | 54979090 | ID=MsG0580027159.01.T01:exon:41438;Parent=MsG0580027159.01.T01 |
Chr5 | exon | 54978614 | 54978653 | 54978614 | ID=MsG0580027159.01.T01:exon:41437;Parent=MsG0580027159.01.T01 |
Chr5 | CDS | 54979276 | 54980002 | 54979276 | ID=MsG0580027159.01.T01:cds;Parent=MsG0580027159.01.T01 |
Chr5 | CDS | 54979090 | 54979201 | 54979090 | ID=MsG0580027159.01.T01:cds;Parent=MsG0580027159.01.T01 |
Chr5 | CDS | 54978614 | 54978653 | 54978614 | ID=MsG0580027159.01.T01:cds;Parent=MsG0580027159.01.T01 |
Gene Sequence |
Protein sequence |