AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280007745.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007745.01.T01 MTR_2g031410 96.805 532 17 0 1 532 1 532 0.0 1068
MsG0280007745.01.T01 MTR_2g031410 97.311 409 11 0 124 532 1 409 0.0 819
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007745.01.T01 AT4G35540 44.917 541 269 10 6 532 2 527 1.61e-136 406

Find 120 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGTCAAGGGGATTGGTTTC+AGG 0.141369 2:+19930961 MsG0280007745.01.T01:CDS
GAACAATTCACCACTCAATT+AGG 0.149287 2:+19930878 MsG0280007745.01.T01:CDS
TATTAGGGTTGTTGATTATT+TGG 0.150898 2:+19931096 MsG0280007745.01.T01:CDS
ACCTTTGGTGGTTTCGGTTT+TGG 0.209963 2:+19931297 MsG0280007745.01.T01:CDS
GCCTTTACCTTTGGTGGTTT+CGG 0.244583 2:+19931291 MsG0280007745.01.T01:CDS
AGCTTGGGAAGATGGTTATT+AGG 0.244616 2:+19931080 MsG0280007745.01.T01:CDS
TGATATTCGGTTGGAGGATT+TGG 0.263600 2:+19931345 MsG0280007745.01.T01:CDS
TAGGGAGGTTGATAGGAGTT+TGG 0.285403 2:+19931195 MsG0280007745.01.T01:CDS
GATTTAATAGAGAAGGATAT+TGG 0.309330 2:+19931895 MsG0280007745.01.T01:CDS
AACAATTCACCACTCAATTA+GGG 0.332083 2:+19930879 MsG0280007745.01.T01:CDS
GCTTGGGAAGATGGTTATTA+GGG 0.333982 2:+19931081 MsG0280007745.01.T01:CDS
CATCCATTACATGCTGATCT+TGG 0.348193 2:+19932018 MsG0280007745.01.T01:CDS
CAGGAGGGGCAATATGAGTA+TGG 0.351574 2:+19931613 MsG0280007745.01.T01:CDS
TGATCAGACTGGGTTGGATT+TGG 0.359898 2:+19931564 MsG0280007745.01.T01:CDS
ATCCATTACATGCTGATCTT+GGG 0.370201 2:+19932019 MsG0280007745.01.T01:CDS
CAATATGAGTATGGGGTTGA+TGG 0.373951 2:+19931622 MsG0280007745.01.T01:CDS
AGATTAATGGAGTTGATATT+CGG 0.376635 2:+19931332 MsG0280007745.01.T01:CDS
GATATCACTGATGGCGAATT+CGG 0.385547 2:+19930941 MsG0280007745.01.T01:CDS
ACATCCTTCCTCTTCTCAAC+AGG 0.394246 2:-19931541 None:intergenic
GCCGTTTGTGATTCAGTATA+TGG 0.395048 2:+19931498 MsG0280007745.01.T01:CDS
GGGGCGTAGGCCTTTACCTT+TGG 0.395648 2:+19931282 MsG0280007745.01.T01:CDS
TACATCAGAGACAAACATTC+AGG 0.407335 2:-19931736 None:intergenic
AAATGCACAATATCAAAATC+TGG 0.409859 2:-19931139 None:intergenic
TTCACCCGCGACGACGAAAC+CGG 0.421147 2:+19930686 MsG0280007745.01.T01:CDS
GCGTAGGCCTTTACCTTTGG+TGG 0.421725 2:+19931285 MsG0280007745.01.T01:CDS
GCGAATTCGGTCAAGGGGAT+TGG 0.436606 2:+19930954 MsG0280007745.01.T01:CDS
ATCGTGATGCTATGTCTTCA+AGG 0.440117 2:+19931779 MsG0280007745.01.T01:CDS
CACATCGGAACCTCCGGTTC+AGG 0.441435 2:+19930803 MsG0280007745.01.T01:CDS
GGGCATTACAATACCTTACT+AGG 0.441637 2:+19932189 MsG0280007745.01.T01:CDS
TACGAGCGGAGAATAATTTA+CGG 0.442706 2:-19930847 None:intergenic
TGTTGCGCAAGTGTTGCCTT+GGG 0.457664 2:+19931438 MsG0280007745.01.T01:CDS
TGGAGTTGATATTCGGTTGG+AGG 0.458813 2:+19931339 MsG0280007745.01.T01:CDS
AGGAAGGATGTTGATCAGAC+TGG 0.469196 2:+19931553 MsG0280007745.01.T01:CDS
TGTCAGTTGATGGTATTGAT+TGG 0.469973 2:+19932106 MsG0280007745.01.T01:CDS
AGAGTAGATAGTACCTGAAC+CGG 0.475919 2:-19930816 None:intergenic
GGGCTGTTCTGCGCCGCATG+AGG 0.477078 2:-19930723 None:intergenic
TTCGTCGTCGCGGGTGAATG+AGG 0.477355 2:-19930681 None:intergenic
CTTGGGGATACTGCAAATCT+TGG 0.477564 2:+19932036 MsG0280007745.01.T01:CDS
AGAAGAGGAATGTCAGTTGA+TGG 0.480043 2:+19932096 MsG0280007745.01.T01:CDS
CGCCAGAGTTAAACACATAT+AGG 0.481048 2:-19932212 None:intergenic
GTCAGTTGATGGTATTGATT+GGG 0.482954 2:+19932107 MsG0280007745.01.T01:CDS
TTGTTTCGACTTGTAGAACT+AGG 0.483197 2:+19931386 MsG0280007745.01.T01:CDS
AAGGATGAGGAAATTGAGAA+AGG 0.488481 2:+19932168 MsG0280007745.01.T01:CDS
GTTGATTATTTGGATTTGAG+AGG 0.498670 2:+19931106 MsG0280007745.01.T01:CDS
CAATTGACCATTGACAAATG+AGG 0.499040 2:-19931935 None:intergenic
TGGGTTGGATTTGGCTGATG+TGG 0.502402 2:+19931573 MsG0280007745.01.T01:CDS
ATGTTGCGCAAGTGTTGCCT+TGG 0.503658 2:+19931437 MsG0280007745.01.T01:CDS
TTCGTCCACATCGGAACCTC+CGG 0.504180 2:+19930797 MsG0280007745.01.T01:CDS
AATTGACCATTGACAAATGA+GGG 0.504917 2:-19931934 None:intergenic
ATATTGTGCATTTGTTGAAA+AGG 0.505084 2:+19931149 MsG0280007745.01.T01:CDS
TAATGGAGTTGATATTCGGT+TGG 0.505545 2:+19931336 MsG0280007745.01.T01:CDS
TCCCCAAGATCAGCATGTAA+TGG 0.508917 2:-19932021 None:intergenic
ACTGAAAGATTTAATAGAGA+AGG 0.510387 2:+19931888 MsG0280007745.01.T01:CDS
TCCATATACTGAATCACAAA+CGG 0.516426 2:-19931499 None:intergenic
ACCGAAACCACCAAAGGTAA+AGG 0.519027 2:-19931292 None:intergenic
CAAATGTTCAGAAACGGAAA+AGG 0.524266 2:+19931806 MsG0280007745.01.T01:CDS
AAACACATATAGGCCTAGTA+AGG 0.525978 2:-19932202 None:intergenic
GGATGTTGATCAGACTGGGT+TGG 0.526107 2:+19931558 MsG0280007745.01.T01:CDS
TTGTGGACCGTTGATTCCGA+TGG 0.532490 2:-19930768 None:intergenic
TTGATTATTTGGATTTGAGA+GGG 0.532546 2:+19931107 MsG0280007745.01.T01:CDS
AGGATGAGGAAATTGAGAAA+GGG 0.534335 2:+19932169 MsG0280007745.01.T01:CDS
TGTTCAGAAACGGAAAAGGT+TGG 0.536629 2:+19931810 MsG0280007745.01.T01:CDS
GTCAATTGAAATGTAAAATG+AGG 0.539663 2:+19931950 MsG0280007745.01.T01:CDS
ACTTGTTCTTCATCAAGTAA+AGG 0.541741 2:+19932149 MsG0280007745.01.T01:CDS
GGCCTATATGTGTTTAACTC+TGG 0.542099 2:+19932210 MsG0280007745.01.T01:CDS
ATGCCACCCTCATTTGTCAA+TGG 0.547561 2:+19931928 MsG0280007745.01.T01:CDS
TCCATTACATGCTGATCTTG+GGG 0.550027 2:+19932020 MsG0280007745.01.T01:CDS
GGAGTGCAAATGTTCAGAAA+CGG 0.550767 2:+19931800 MsG0280007745.01.T01:CDS
GTTGGAGGATTTGGCGAAGG+AGG 0.555166 2:+19931354 MsG0280007745.01.T01:CDS
GTTGATAGAATGAAGAAACA+AGG 0.555439 2:+19931217 MsG0280007745.01.T01:CDS
CAAAGTAATGGTGATAGAGA+AGG 0.556116 2:+19931682 MsG0280007745.01.T01:CDS
GGAGTGGTGGAATGAAGAAT+CGG 0.557731 2:+19931846 MsG0280007745.01.T01:CDS
TGGTGATAGAGAAGGTATTG+TGG 0.557817 2:+19931690 MsG0280007745.01.T01:CDS
ACCGCCGGTTTCGTCGTCGC+GGG 0.558652 2:-19930690 None:intergenic
ATGATTAGTGATATCACTGA+TGG 0.559337 2:+19930932 MsG0280007745.01.T01:CDS
AGGAGGGGCAATATGAGTAT+GGG 0.559945 2:+19931614 MsG0280007745.01.T01:CDS
AACCGCCGGTTTCGTCGTCG+CGG 0.561590 2:-19930691 None:intergenic
CAGCGACGAGAAGTTGACAT+TGG 0.563031 2:-19930641 None:intergenic
TCTTCATCAAGTAAAGGATG+AGG 0.569871 2:+19932155 MsG0280007745.01.T01:CDS
ACTGATGGCGAATTCGGTCA+AGG 0.571355 2:+19930947 MsG0280007745.01.T01:CDS
CTGATGGCGAATTCGGTCAA+GGG 0.573205 2:+19930948 MsG0280007745.01.T01:CDS
GAGAGAAAGAAGAACAGAAG+AGG 0.578354 2:+19932081 MsG0280007745.01.T01:CDS
ATTGACAAATGAGGGTGGCA+TGG 0.583819 2:-19931926 None:intergenic
GTAAGTTTCGAATTGATCGA+AGG 0.585342 2:-19930744 None:intergenic
AATGAAGTTGCGAATGCGGT+TGG 0.585805 2:+19931043 MsG0280007745.01.T01:CDS
AAGGTATTGTGGATGATGAA+AGG 0.587808 2:+19931701 MsG0280007745.01.T01:CDS
TTGATAGAATGAAGAAACAA+GGG 0.589111 2:+19931218 MsG0280007745.01.T01:CDS
TGTCGAAGCCTGTTGAGAAG+AGG 0.590299 2:+19931533 MsG0280007745.01.T01:CDS
TTGCGCAAGTGTTGCCTTGG+GGG 0.591039 2:+19931440 MsG0280007745.01.T01:CDS
AGATCAATGCTGCAAAGAAG+CGG 0.602307 2:+19931980 MsG0280007745.01.T01:CDS
GGAAGGATGTTGATCAGACT+GGG 0.602769 2:+19931554 MsG0280007745.01.T01:CDS
TCGGTTGGAGGATTTGGCGA+AGG 0.605651 2:+19931351 MsG0280007745.01.T01:CDS
ACTTACACCATCGGAATCAA+CGG 0.614239 2:+19930761 MsG0280007745.01.T01:CDS
TAAGTTTCGAATTGATCGAA+GGG 0.622958 2:-19930743 None:intergenic
ATCGGAATCAACGGTCCACA+AGG 0.623023 2:+19930770 MsG0280007745.01.T01:CDS
ACCAAAACCGAAACCACCAA+AGG 0.623872 2:-19931298 None:intergenic
TGATGGCGAATTCGGTCAAG+GGG 0.625481 2:+19930949 MsG0280007745.01.T01:CDS
GATGAGTGCTTAACACAGGA+GGG 0.625762 2:+19931598 MsG0280007745.01.T01:CDS
TGATGAGTGCTTAACACAGG+AGG 0.628170 2:+19931597 MsG0280007745.01.T01:CDS
TGAGGAGCAGAATGAACCGC+CGG 0.630001 2:-19930705 None:intergenic
AATAGAGAAGGATATTGGAG+TGG 0.630511 2:+19931900 MsG0280007745.01.T01:CDS
ATGTGGACGAAGGTTCCTTG+TGG 0.630985 2:-19930785 None:intergenic
CAAGGAACCTTCGTCCACAT+CGG 0.633895 2:+19930788 MsG0280007745.01.T01:CDS
CAATTCGAAACTTACACCAT+CGG 0.639402 2:+19930752 MsG0280007745.01.T01:CDS
GATGAATGAAGTTGCGAATG+CGG 0.643098 2:+19931039 MsG0280007745.01.T01:CDS
CGTGTTGTTATGTTGTTATG+CGG 0.645528 2:+19930996 MsG0280007745.01.T01:CDS
GGAGGGGCAATATGAGTATG+GGG 0.648566 2:+19931615 MsG0280007745.01.T01:CDS
GGTTCATTCTGCTCCTCATG+CGG 0.655444 2:+19930710 MsG0280007745.01.T01:CDS
GAAGCCTGTTGAGAAGAGGA+AGG 0.661443 2:+19931537 MsG0280007745.01.T01:CDS
GTTGCGCAAGTGTTGCCTTG+GGG 0.664565 2:+19931439 MsG0280007745.01.T01:CDS
GGAAGCTAACCCTAATTGAG+TGG 0.666970 2:-19930888 None:intergenic
GGAGGTTCCGATGTGGACGA+AGG 0.672933 2:-19930795 None:intergenic
TTGTTCAATAGAATTACGAG+CGG 0.687980 2:-19930861 None:intergenic
TGATAGAATGAAGAAACAAG+GGG 0.688848 2:+19931219 MsG0280007745.01.T01:CDS
ACCCGCGACGACGAAACCGG+CGG 0.692169 2:+19930689 MsG0280007745.01.T01:CDS
GTAGATAGTACCTGAACCGG+AGG 0.693829 2:-19930813 None:intergenic
CTGAACCGGAGGTTCCGATG+TGG 0.697570 2:-19930802 None:intergenic
ATGAGTGCTTAACACAGGAG+GGG 0.699013 2:+19931599 MsG0280007745.01.T01:CDS
TGACCATTGACAAATGAGGG+TGG 0.700636 2:-19931931 None:intergenic
GGTTGATGAGTGCTTAACAC+AGG 0.740005 2:+19931594 MsG0280007745.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTAATTTCAATTTTCT+TGG - Chr2:19930912-19930931 None:intergenic 10.0%
!!! AAAAATACTGAGAATCTTTT+CGG - Chr2:19931657-19931676 None:intergenic 20.0%
!!! TATTTTTCATTGCAAAGTAA+TGG + Chr2:19931670-19931689 MsG0280007745.01.T01:CDS 20.0%
! AAATGCACAATATCAAAATC+TGG - Chr2:19931142-19931161 None:intergenic 25.0%
! ACTGAAAGATTTAATAGAGA+AGG + Chr2:19931888-19931907 MsG0280007745.01.T01:CDS 25.0%
! GATTTAATAGAGAAGGATAT+TGG + Chr2:19931895-19931914 MsG0280007745.01.T01:CDS 25.0%
! GTCAATTGAAATGTAAAATG+AGG + Chr2:19931950-19931969 MsG0280007745.01.T01:CDS 25.0%
! TTGATAGAATGAAGAAACAA+GGG + Chr2:19931218-19931237 MsG0280007745.01.T01:CDS 25.0%
! TTGATTATTTGGATTTGAGA+GGG + Chr2:19931107-19931126 MsG0280007745.01.T01:CDS 25.0%
!! ATATTGTGCATTTGTTGAAA+AGG + Chr2:19931149-19931168 MsG0280007745.01.T01:CDS 25.0%
!! TATTAGGGTTGTTGATTATT+TGG + Chr2:19931096-19931115 MsG0280007745.01.T01:CDS 25.0%
!!! AGATTAATGGAGTTGATATT+CGG + Chr2:19931332-19931351 MsG0280007745.01.T01:CDS 25.0%
AACAATTCACCACTCAATTA+GGG + Chr2:19930879-19930898 MsG0280007745.01.T01:CDS 30.0%
AATTGACCATTGACAAATGA+GGG - Chr2:19931937-19931956 None:intergenic 30.0%
ACTTGTTCTTCATCAAGTAA+AGG + Chr2:19932149-19932168 MsG0280007745.01.T01:CDS 30.0%
ATGATTAGTGATATCACTGA+TGG + Chr2:19930932-19930951 MsG0280007745.01.T01:CDS 30.0%
GTTGATTATTTGGATTTGAG+AGG + Chr2:19931106-19931125 MsG0280007745.01.T01:CDS 30.0%
TAAGTTTCGAATTGATCGAA+GGG - Chr2:19930746-19930765 None:intergenic 30.0%
TCCATATACTGAATCACAAA+CGG - Chr2:19931502-19931521 None:intergenic 30.0%
TGATAGAATGAAGAAACAAG+GGG + Chr2:19931219-19931238 MsG0280007745.01.T01:CDS 30.0%
TTGTTCAATAGAATTACGAG+CGG - Chr2:19930864-19930883 None:intergenic 30.0%
! GTTGATAGAATGAAGAAACA+AGG + Chr2:19931217-19931236 MsG0280007745.01.T01:CDS 30.0%
!! TGATAGTTGTCGTTGTTTTA+GGG + Chr2:19931177-19931196 MsG0280007745.01.T01:CDS 30.0%
!! TTGATAGTTGTCGTTGTTTT+AGG + Chr2:19931176-19931195 MsG0280007745.01.T01:CDS 30.0%
!!! GATTGGTTTCAGGTTTTAAT+TGG + Chr2:19930971-19930990 MsG0280007745.01.T01:CDS 30.0%
AAACACATATAGGCCTAGTA+AGG - Chr2:19932205-19932224 None:intergenic 35.0%
AAGGATGAGGAAATTGAGAA+AGG + Chr2:19932168-19932187 MsG0280007745.01.T01:CDS 35.0%
AATAGAGAAGGATATTGGAG+TGG + Chr2:19931900-19931919 MsG0280007745.01.T01:CDS 35.0%
AGGATGAGGAAATTGAGAAA+GGG + Chr2:19932169-19932188 MsG0280007745.01.T01:CDS 35.0%
ATCCATTACATGCTGATCTT+GGG + Chr2:19932019-19932038 MsG0280007745.01.T01:CDS 35.0%
CAAAGTAATGGTGATAGAGA+AGG + Chr2:19931682-19931701 MsG0280007745.01.T01:CDS 35.0%
CAAATGTTCAGAAACGGAAA+AGG + Chr2:19931806-19931825 MsG0280007745.01.T01:CDS 35.0%
CAATTCGAAACTTACACCAT+CGG + Chr2:19930752-19930771 MsG0280007745.01.T01:CDS 35.0%
CAATTGACCATTGACAAATG+AGG - Chr2:19931938-19931957 None:intergenic 35.0%
GAACAATTCACCACTCAATT+AGG + Chr2:19930878-19930897 MsG0280007745.01.T01:CDS 35.0%
GTAAGTTTCGAATTGATCGA+AGG - Chr2:19930747-19930766 None:intergenic 35.0%
TACATCAGAGACAAACATTC+AGG - Chr2:19931739-19931758 None:intergenic 35.0%
TACGAGCGGAGAATAATTTA+CGG - Chr2:19930850-19930869 None:intergenic 35.0%
TCTTCATCAAGTAAAGGATG+AGG + Chr2:19932155-19932174 MsG0280007745.01.T01:CDS 35.0%
! AAGGTTGGAACTTGATTTTC+AGG + Chr2:19931825-19931844 MsG0280007745.01.T01:CDS 35.0%
! CGTGTTGTTATGTTGTTATG+CGG + Chr2:19930996-19931015 MsG0280007745.01.T01:CDS 35.0%
! TTGTTTCGACTTGTAGAACT+AGG + Chr2:19931386-19931405 MsG0280007745.01.T01:CDS 35.0%
!! AAGGTATTGTGGATGATGAA+AGG + Chr2:19931701-19931720 MsG0280007745.01.T01:CDS 35.0%
!! GTCAGTTGATGGTATTGATT+GGG + Chr2:19932107-19932126 MsG0280007745.01.T01:CDS 35.0%
!! GTTGTGATGTTTTTGAGCTT+GGG + Chr2:19931065-19931084 MsG0280007745.01.T01:CDS 35.0%
!! TAATGGAGTTGATATTCGGT+TGG + Chr2:19931336-19931355 MsG0280007745.01.T01:CDS 35.0%
!! TGTCAGTTGATGGTATTGAT+TGG + Chr2:19932106-19932125 MsG0280007745.01.T01:CDS 35.0%
!!! GGTGAAGTTGTTTTTGAGTA+CGG + Chr2:19931261-19931280 MsG0280007745.01.T01:CDS 35.0%
!!! GTGAAGTTGTTTTTGAGTAC+GGG + Chr2:19931262-19931281 MsG0280007745.01.T01:CDS 35.0%
!!! TGAAGTTGTTTTTGAGTACG+GGG + Chr2:19931263-19931282 MsG0280007745.01.T01:CDS 35.0%
ACTTACACCATCGGAATCAA+CGG + Chr2:19930761-19930780 MsG0280007745.01.T01:CDS 40.0%
AGAAGAGGAATGTCAGTTGA+TGG + Chr2:19932096-19932115 MsG0280007745.01.T01:CDS 40.0%
AGAGTAGATAGTACCTGAAC+CGG - Chr2:19930819-19930838 None:intergenic 40.0%
AGATCAATGCTGCAAAGAAG+CGG + Chr2:19931980-19931999 MsG0280007745.01.T01:CDS 40.0%
AGCTTGGGAAGATGGTTATT+AGG + Chr2:19931080-19931099 MsG0280007745.01.T01:CDS 40.0%
ATCGTGATGCTATGTCTTCA+AGG + Chr2:19931779-19931798 MsG0280007745.01.T01:CDS 40.0%
CAATATGAGTATGGGGTTGA+TGG + Chr2:19931622-19931641 MsG0280007745.01.T01:CDS 40.0%
CATCCATTACATGCTGATCT+TGG + Chr2:19932018-19932037 MsG0280007745.01.T01:CDS 40.0%
CGCCAGAGTTAAACACATAT+AGG - Chr2:19932215-19932234 None:intergenic 40.0%
GAGAGAAAGAAGAACAGAAG+AGG + Chr2:19932081-19932100 MsG0280007745.01.T01:CDS 40.0%
GATGAATGAAGTTGCGAATG+CGG + Chr2:19931039-19931058 MsG0280007745.01.T01:CDS 40.0%
GCCGTTTGTGATTCAGTATA+TGG + Chr2:19931498-19931517 MsG0280007745.01.T01:CDS 40.0%
GCTTGGGAAGATGGTTATTA+GGG + Chr2:19931081-19931100 MsG0280007745.01.T01:CDS 40.0%
GGAGTGCAAATGTTCAGAAA+CGG + Chr2:19931800-19931819 MsG0280007745.01.T01:CDS 40.0%
GGCCTATATGTGTTTAACTC+TGG + Chr2:19932210-19932229 MsG0280007745.01.T01:CDS 40.0%
GGGCATTACAATACCTTACT+AGG + Chr2:19932189-19932208 MsG0280007745.01.T01:CDS 40.0%
TCCATTACATGCTGATCTTG+GGG + Chr2:19932020-19932039 MsG0280007745.01.T01:CDS 40.0%
TGATATTCGGTTGGAGGATT+TGG + Chr2:19931345-19931364 MsG0280007745.01.T01:CDS 40.0%
TGTTCAGAAACGGAAAAGGT+TGG + Chr2:19931810-19931829 MsG0280007745.01.T01:CDS 40.0%
TTCGTAATATCTTTCCCCCA+AGG - Chr2:19931457-19931476 None:intergenic 40.0%
! GATATCACTGATGGCGAATT+CGG + Chr2:19930941-19930960 MsG0280007745.01.T01:CDS 40.0%
!! AACTTGATTTTCAGGAGTGG+TGG + Chr2:19931833-19931852 MsG0280007745.01.T01:CDS 40.0%
!! GGTGTTTTTGTTGCAATGTG+CGG + Chr2:19931240-19931259 MsG0280007745.01.T01:CDS 40.0%
!! GGTTGTGATGTTTTTGAGCT+TGG + Chr2:19931064-19931083 MsG0280007745.01.T01:CDS 40.0%
!! TGGAACTTGATTTTCAGGAG+TGG + Chr2:19931830-19931849 MsG0280007745.01.T01:CDS 40.0%
!! TGGTGATAGAGAAGGTATTG+TGG + Chr2:19931690-19931709 MsG0280007745.01.T01:CDS 40.0%
!! TGTTTTTGAGCTTGGGAAGA+TGG + Chr2:19931072-19931091 MsG0280007745.01.T01:CDS 40.0%
!!! GTTGTTTTAGGGAGGTTGAT+AGG + Chr2:19931188-19931207 MsG0280007745.01.T01:CDS 40.0%
!!! GTTTTGGTTGCGGAGATTAA+TGG + Chr2:19931319-19931338 MsG0280007745.01.T01:CDS 40.0%
!!! TAGTTGTCGTTGTTTTAGGG+AGG + Chr2:19931180-19931199 MsG0280007745.01.T01:CDS 40.0%
!!! TTCGGTTTTGGTTTTGGTTG+CGG + Chr2:19931309-19931328 MsG0280007745.01.T01:CDS 40.0%
AATGAAGTTGCGAATGCGGT+TGG + Chr2:19931043-19931062 MsG0280007745.01.T01:CDS 45.0%
ACATCCTTCCTCTTCTCAAC+AGG - Chr2:19931544-19931563 None:intergenic 45.0%
ACCAAAACCGAAACCACCAA+AGG - Chr2:19931301-19931320 None:intergenic 45.0%
ACCGAAACCACCAAAGGTAA+AGG - Chr2:19931295-19931314 None:intergenic 45.0%
AGGAAGGATGTTGATCAGAC+TGG + Chr2:19931553-19931572 MsG0280007745.01.T01:CDS 45.0%
AGGAGGGGCAATATGAGTAT+GGG + Chr2:19931614-19931633 MsG0280007745.01.T01:CDS 45.0%
ATGAGTGCTTAACACAGGAG+GGG + Chr2:19931599-19931618 MsG0280007745.01.T01:CDS 45.0%
ATGCCACCCTCATTTGTCAA+TGG + Chr2:19931928-19931947 MsG0280007745.01.T01:CDS 45.0%
ATTGACAAATGAGGGTGGCA+TGG - Chr2:19931929-19931948 None:intergenic 45.0%
CTTGGGGATACTGCAAATCT+TGG + Chr2:19932036-19932055 MsG0280007745.01.T01:CDS 45.0%
GATGAGTGCTTAACACAGGA+GGG + Chr2:19931598-19931617 MsG0280007745.01.T01:CDS 45.0%
GGAAGCTAACCCTAATTGAG+TGG - Chr2:19930891-19930910 None:intergenic 45.0%
GGAAGGATGTTGATCAGACT+GGG + Chr2:19931554-19931573 MsG0280007745.01.T01:CDS 45.0%
TCCCCAAGATCAGCATGTAA+TGG - Chr2:19932024-19932043 None:intergenic 45.0%
TGACCATTGACAAATGAGGG+TGG - Chr2:19931934-19931953 None:intergenic 45.0%
TGATGAGTGCTTAACACAGG+AGG + Chr2:19931597-19931616 MsG0280007745.01.T01:CDS 45.0%
! GCCTTTACCTTTGGTGGTTT+CGG + Chr2:19931291-19931310 MsG0280007745.01.T01:CDS 45.0%
! GGAGTGGTGGAATGAAGAAT+CGG + Chr2:19931846-19931865 MsG0280007745.01.T01:CDS 45.0%
! TGATCAGACTGGGTTGGATT+TGG + Chr2:19931564-19931583 MsG0280007745.01.T01:CDS 45.0%
!! ACCTTTGGTGGTTTCGGTTT+TGG + Chr2:19931297-19931316 MsG0280007745.01.T01:CDS 45.0%
!! GGTTGATGAGTGCTTAACAC+AGG + Chr2:19931594-19931613 MsG0280007745.01.T01:CDS 45.0%
!! TAGGGAGGTTGATAGGAGTT+TGG + Chr2:19931195-19931214 MsG0280007745.01.T01:CDS 45.0%
!! TGGAGTTGATATTCGGTTGG+AGG + Chr2:19931339-19931358 MsG0280007745.01.T01:CDS 45.0%
!!! GGTGGTTTCGGTTTTGGTTT+TGG + Chr2:19931303-19931322 MsG0280007745.01.T01:CDS 45.0%
ATCGGAATCAACGGTCCACA+AGG + Chr2:19930770-19930789 MsG0280007745.01.T01:CDS 50.0%
ATGTGGACGAAGGTTCCTTG+TGG - Chr2:19930788-19930807 None:intergenic 50.0%
CAAGGAACCTTCGTCCACAT+CGG + Chr2:19930788-19930807 MsG0280007745.01.T01:CDS 50.0%
CAGGAGGGGCAATATGAGTA+TGG + Chr2:19931613-19931632 MsG0280007745.01.T01:CDS 50.0%
GAAGCCTGTTGAGAAGAGGA+AGG + Chr2:19931537-19931556 MsG0280007745.01.T01:CDS 50.0%
GGAGGGGCAATATGAGTATG+GGG + Chr2:19931615-19931634 MsG0280007745.01.T01:CDS 50.0%
GGATGTTGATCAGACTGGGT+TGG + Chr2:19931558-19931577 MsG0280007745.01.T01:CDS 50.0%
GGTTCATTCTGCTCCTCATG+CGG + Chr2:19930710-19930729 MsG0280007745.01.T01:CDS 50.0%
GTAGATAGTACCTGAACCGG+AGG - Chr2:19930816-19930835 None:intergenic 50.0%
TGTCGAAGCCTGTTGAGAAG+AGG + Chr2:19931533-19931552 MsG0280007745.01.T01:CDS 50.0%
! ACTGATGGCGAATTCGGTCA+AGG + Chr2:19930947-19930966 MsG0280007745.01.T01:CDS 50.0%
! ATGTTGCGCAAGTGTTGCCT+TGG + Chr2:19931437-19931456 MsG0280007745.01.T01:CDS 50.0%
! CTGATGGCGAATTCGGTCAA+GGG + Chr2:19930948-19930967 MsG0280007745.01.T01:CDS 50.0%
! TGATGGCGAATTCGGTCAAG+GGG + Chr2:19930949-19930968 MsG0280007745.01.T01:CDS 50.0%
! TGGGTTGGATTTGGCTGATG+TGG + Chr2:19931573-19931592 MsG0280007745.01.T01:CDS 50.0%
! TGTTGCGCAAGTGTTGCCTT+GGG + Chr2:19931438-19931457 MsG0280007745.01.T01:CDS 50.0%
!! TTGTGGACCGTTGATTCCGA+TGG - Chr2:19930771-19930790 None:intergenic 50.0%
!!! TGTTTTTGAGTACGGGGCGT+AGG + Chr2:19931269-19931288 MsG0280007745.01.T01:CDS 50.0%
GCGAATTCGGTCAAGGGGAT+TGG + Chr2:19930954-19930973 MsG0280007745.01.T01:CDS 55.0%
GCGTAGGCCTTTACCTTTGG+TGG + Chr2:19931285-19931304 MsG0280007745.01.T01:CDS 55.0%
GTTGGAGGATTTGGCGAAGG+AGG + Chr2:19931354-19931373 MsG0280007745.01.T01:CDS 55.0%
TCGGTTGGAGGATTTGGCGA+AGG + Chr2:19931351-19931370 MsG0280007745.01.T01:CDS 55.0%
TGAGGAGCAGAATGAACCGC+CGG - Chr2:19930708-19930727 None:intergenic 55.0%
TTCGTCCACATCGGAACCTC+CGG + Chr2:19930797-19930816 MsG0280007745.01.T01:CDS 55.0%
! GTTGCGCAAGTGTTGCCTTG+GGG + Chr2:19931439-19931458 MsG0280007745.01.T01:CDS 55.0%
! TTGCGCAAGTGTTGCCTTGG+GGG + Chr2:19931440-19931459 MsG0280007745.01.T01:CDS 55.0%
!! CGGTCAAGGGGATTGGTTTC+AGG + Chr2:19930961-19930980 MsG0280007745.01.T01:CDS 55.0%
CACATCGGAACCTCCGGTTC+AGG + Chr2:19930803-19930822 MsG0280007745.01.T01:CDS 60.0%
CTGAACCGGAGGTTCCGATG+TGG - Chr2:19930805-19930824 None:intergenic 60.0%
GGAGGTTCCGATGTGGACGA+AGG - Chr2:19930798-19930817 None:intergenic 60.0%
GGGGCGTAGGCCTTTACCTT+TGG + Chr2:19931282-19931301 MsG0280007745.01.T01:CDS 60.0%
TTCACCCGCGACGACGAAAC+CGG + Chr2:19930686-19930705 MsG0280007745.01.T01:CDS 60.0%
TTCGTCGTCGCGGGTGAATG+AGG - Chr2:19930684-19930703 None:intergenic 60.0%
!! AACCGCCGGTTTCGTCGTCG+CGG - Chr2:19930694-19930713 None:intergenic 65.0%
ACCCGCGACGACGAAACCGG+CGG + Chr2:19930689-19930708 MsG0280007745.01.T01:CDS 70.0%
GGGCTGTTCTGCGCCGCATG+AGG - Chr2:19930726-19930745 None:intergenic 70.0%
!! ACCGCCGGTTTCGTCGTCGC+GGG - Chr2:19930693-19930712 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr2 gene 19930644 19932242 19930644 ID=MsG0280007745.01;Name=MsG0280007745.01
Chr2 mRNA 19930644 19932242 19930644 ID=MsG0280007745.01.T01;Parent=MsG0280007745.01;Name=MsG0280007745.01.T01;_AED=0.12;_eAED=0.12;_QI=0|-1|0|1|-1|1|1|0|532
Chr2 exon 19930644 19932242 19930644 ID=MsG0280007745.01.T01:exon:10288;Parent=MsG0280007745.01.T01
Chr2 CDS 19930644 19932242 19930644 ID=MsG0280007745.01.T01:cds;Parent=MsG0280007745.01.T01
Gene Sequence

>MsG0280007745.01.T01

ATGTCAACTTCTCGTCGCTGCATAAACTGCAGCAAAACCTCATTCACCCGCGACGACGAAACCGGCGGTTCATTCTGCTCCTCATGCGGCGCAGAACAGCCCTTCGATCAATTCGAAACTTACACCATCGGAATCAACGGTCCACAAGGAACCTTCGTCCACATCGGAACCTCCGGTTCAGGTACTATCTACTCTTACAAAGACCGTAAATTATTCTCCGCTCGTAATTCTATTGAACAATTCACCACTCAATTAGGGTTAGCTTCCAAGAAAATTGAAATTAATAAAATGATTAGTGATATCACTGATGGCGAATTCGGTCAAGGGGATTGGTTTCAGGTTTTAATTGGCGCGTGTTGTTATGTTGTTATGCGGAGAGATGAACATGCTTTATCGATGAATGAAGTTGCGAATGCGGTTGGTTGTGATGTTTTTGAGCTTGGGAAGATGGTTATTAGGGTTGTTGATTATTTGGATTTGAGAGGGAGTGATTTTCCAGATTTTGATATTGTGCATTTGTTGAAAAGGAGTGTTGATAGTTGTCGTTGTTTTAGGGAGGTTGATAGGAGTTTGGTTGATAGAATGAAGAAACAAGGGGTGTTTTTGTTGCAATGTGCGGTGAAGTTGTTTTTGAGTACGGGGCGTAGGCCTTTACCTTTGGTGGTTTCGGTTTTGGTTTTGGTTGCGGAGATTAATGGAGTTGATATTCGGTTGGAGGATTTGGCGAAGGAGGTTCATGCTATTGTTTCGACTTGTAGAACTAGGTATAAAGAGCTTCTTGAGACGCTTGTGAATGTTGCGCAAGTGTTGCCTTGGGGGAAAGATATTACGAAGAAAAATATTATTAAGAATGCGCCGTTTGTGATTCAGTATATGGAGAAGAAGTCTATGTCGAAGCCTGTTGAGAAGAGGAAGGATGTTGATCAGACTGGGTTGGATTTGGCTGATGTGGTTGATGAGTGCTTAACACAGGAGGGGCAATATGAGTATGGGGTTGATGGATTAGTTCACCGAAAAGATTCTCAGTATTTTTCATTGCAAAGTAATGGTGATAGAGAAGGTATTGTGGATGATGAAAGGTTACAGATTTCACCTGAATGTTTGTCTCTGATGTATGACAAATTTTTGAATGAGAATCGTGATGCTATGTCTTCAAGGAGTGCAAATGTTCAGAAACGGAAAAGGTTGGAACTTGATTTTCAGGAGTGGTGGAATGAAGAATCGGAACTGAGCAGAAAGCTTATACTGAAAGATTTAATAGAGAAGGATATTGGAGTGGAAACCATGCCACCCTCATTTGTCAATGGTCAATTGAAATGTAAAATGAGGCGAGAGAAGATCAATGCTGCAAAGAAGCGGATAAAAAGAATAACTCATCCATTACATGCTGATCTTGGGGATACTGCAAATCTTGGCATTTTAGATAGCACTTGCACTGAGAGAAAGAAGAACAGAAGAGGAATGTCAGTTGATGGTATTGATTGGGAAGACTTGATTATTGAGACACTTGTTCTTCATCAAGTAAAGGATGAGGAAATTGAGAAAGGGCATTACAATACCTTACTAGGCCTATATGTGTTTAACTCTGGCGTTATATAA

Protein sequence

>MsG0280007745.01.T01

MSTSRRCINCSKTSFTRDDETGGSFCSSCGAEQPFDQFETYTIGINGPQGTFVHIGTSGSGTIYSYKDRKLFSARNSIEQFTTQLGLASKKIEINKMISDITDGEFGQGDWFQVLIGACCYVVMRRDEHALSMNEVANAVGCDVFELGKMVIRVVDYLDLRGSDFPDFDIVHLLKRSVDSCRCFREVDRSLVDRMKKQGVFLLQCAVKLFLSTGRRPLPLVVSVLVLVAEINGVDIRLEDLAKEVHAIVSTCRTRYKELLETLVNVAQVLPWGKDITKKNIIKNAPFVIQYMEKKSMSKPVEKRKDVDQTGLDLADVVDECLTQEGQYEYGVDGLVHRKDSQYFSLQSNGDREGIVDDERLQISPECLSLMYDKFLNENRDAMSSRSANVQKRKRLELDFQEWWNEESELSRKLILKDLIEKDIGVETMPPSFVNGQLKCKMRREKINAAKKRIKRITHPLHADLGDTANLGILDSTCTERKKNRRGMSVDGIDWEDLIIETLVLHQVKDEEIEKGHYNTLLGLYVFNSGVI*