Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0074250 | KEH17418.1 | 94.444 | 144 | 8 | 0 | 1 | 144 | 4 | 147 | 1.59e-87 | 262 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0074250 | A0A072TKP3 | 94.444 | 144 | 8 | 0 | 1 | 144 | 4 | 147 | 7.58e-88 | 262 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012460 | Msa0074250 | 0.809417 | 1.912011e-50 | -8.615850e-47 |
| Msa0016160 | Msa0074250 | 0.804027 | 2.630491e-49 | -8.615850e-47 |
| Msa0034320 | Msa0074250 | 0.813873 | 2.053072e-51 | -8.615850e-47 |
| Msa0043680 | Msa0074250 | 0.822384 | 2.437618e-53 | -8.615850e-47 |
| Msa0065390 | Msa0074250 | 0.807860 | 4.111859e-50 | -8.615850e-47 |
| Msa0074250 | Msa0077910 | 0.849383 | 3.349324e-60 | -8.615850e-47 |
| Msa0074250 | Msa0078090 | 0.800692 | 1.279273e-48 | -8.615850e-47 |
| Msa0074250 | Msa0081300 | 0.819606 | 1.063550e-52 | -8.615850e-47 |
| Msa0074250 | Msa0092180 | 0.816917 | 4.318307e-52 | -8.615850e-47 |
| Msa0074250 | Msa0092660 | 0.805999 | 1.017687e-49 | -8.615850e-47 |
| Msa0074250 | Msa0092680 | 0.800496 | 1.402454e-48 | -8.615850e-47 |
| Msa0074250 | Msa0092730 | 0.802824 | 4.670856e-49 | -8.615850e-47 |
| Msa0074250 | Msa0109870 | 0.808132 | 3.599502e-50 | -8.615850e-47 |
| Msa0074250 | Msa0110710 | 0.808158 | 3.552644e-50 | -8.615850e-47 |
| Msa0074250 | Msa0112290 | 0.807665 | 4.523443e-50 | -8.615850e-47 |
| Msa0074250 | Msa0121650 | 0.846726 | 1.812707e-59 | -8.615850e-47 |
| Msa0074250 | Msa0122210 | 0.855140 | 7.700615e-62 | -8.615850e-47 |
| Msa0074250 | Msa0125800 | 0.848833 | 4.765144e-60 | -8.615850e-47 |
| Msa0074250 | Msa0137600 | 0.803773 | 2.969916e-49 | -8.615850e-47 |
| Msa0074250 | Msa0144340 | 0.813361 | 2.660727e-51 | -8.615850e-47 |
| Msa0074250 | Msa0149070 | 0.800954 | 1.130829e-48 | -8.615850e-47 |
| Msa0074250 | Msa0151790 | 0.804421 | 2.177871e-49 | -8.615850e-47 |
| Msa0074250 | Msa0152380 | 0.818651 | 1.754264e-52 | -8.615850e-47 |
| Msa0074250 | Msa0155550 | 0.828307 | 9.669573e-55 | -8.615850e-47 |
| Msa0074250 | Msa0157020 | 0.807227 | 5.604067e-50 | -8.615850e-47 |
| Msa0074250 | Msa0157350 | 0.802828 | 4.660607e-49 | -8.615850e-47 |
| Msa0074250 | Msa0170440 | 0.849480 | 3.147431e-60 | -8.615850e-47 |
| Msa0074250 | Msa0173610 | 0.812906 | 3.349736e-51 | -8.615850e-47 |
| Msa0074250 | Msa0175280 | 0.804350 | 2.253483e-49 | -8.615850e-47 |
| Msa0074250 | Msa0177280 | 0.812500 | 4.108847e-51 | -8.615850e-47 |
| Msa0074250 | Msa0182610 | 0.818409 | 1.990457e-52 | -8.615850e-47 |
| Msa0074250 | Msa0197900 | 0.802460 | 5.551620e-49 | -8.615850e-47 |
| Msa0074250 | Msa0223280 | 0.823738 | 1.178183e-53 | -8.615850e-47 |
| Msa0074250 | Msa0247310 | 0.806828 | 6.806694e-50 | -8.615850e-47 |
| Msa0074250 | Msa0259980 | 0.818565 | 1.834662e-52 | -8.615850e-47 |
| Msa0074250 | Msa0280120 | 0.820090 | 8.241952e-53 | -8.615850e-47 |
| Msa0074250 | Msa0280140 | 0.808173 | 3.528188e-50 | -8.615850e-47 |
| Msa0074250 | Msa0307460 | 0.812973 | 3.237446e-51 | -8.615850e-47 |
| Msa0074250 | Msa0308430 | 0.803499 | 3.385373e-49 | -8.615850e-47 |
| Msa0074250 | Msa0342620 | 0.805076 | 1.589707e-49 | -8.615850e-47 |
| Msa0074250 | Msa0379450 | 0.822095 | 2.845153e-53 | -8.615850e-47 |
| Msa0074250 | Msa0382500 | 0.803035 | 4.223492e-49 | -8.615850e-47 |
| Msa0074250 | Msa0417630 | 0.813273 | 2.783035e-51 | -8.615850e-47 |
| Msa0074250 | Msa0429270 | 0.815366 | 9.591887e-52 | -8.615850e-47 |
| Msa0074250 | Msa0519200 | 0.813516 | 2.460514e-51 | -8.615850e-47 |
| Msa0074250 | Msa0567290 | 0.811911 | 5.524581e-51 | -8.615850e-47 |
| Msa0074250 | Msa0577110 | 0.816741 | 4.729110e-52 | -8.615850e-47 |
| Msa0074250 | Msa0598080 | 0.810953 | 8.920836e-51 | -8.615850e-47 |
| Msa0074250 | Msa0607480 | 0.810285 | 1.243863e-50 | -8.615850e-47 |
| Msa0074250 | Msa0640880 | 0.809905 | 1.501604e-50 | -8.615850e-47 |
| Msa0074250 | Msa0646710 | 0.814693 | 1.352755e-51 | -8.615850e-47 |
| Msa0074250 | Msa0647460 | 0.834690 | 2.589967e-56 | -8.615850e-47 |
| Msa0074250 | Msa0647750 | 0.815102 | 1.097939e-51 | -8.615850e-47 |
| Msa0074250 | Msa0690500 | 0.838442 | 2.868521e-57 | -8.615850e-47 |
| Msa0074250 | Msa0703720 | 0.802467 | 5.532406e-49 | -8.615850e-47 |
| Msa0074250 | Msa0703760 | 0.812484 | 4.142724e-51 | -8.615850e-47 |
| Msa0074250 | Msa0704570 | 0.804709 | 1.896773e-49 | -8.615850e-47 |
| Msa0074250 | Msa0704720 | 0.813851 | 2.076035e-51 | -8.615850e-47 |
| Msa0074250 | Msa0705250 | 0.817449 | 3.278656e-52 | -8.615850e-47 |
| Msa0074250 | Msa0748890 | 0.805889 | 1.073163e-49 | -8.615850e-47 |
| Msa0074250 | Msa0773080 | 0.805567 | 1.254292e-49 | -8.615850e-47 |
| Msa0074250 | Msa0790180 | 0.812883 | 3.388675e-51 | -8.615850e-47 |
| Msa0074250 | Msa0804110 | 0.815621 | 8.415861e-52 | -8.615850e-47 |
| Msa0074250 | Msa0810370 | 0.803462 | 3.446263e-49 | -8.615850e-47 |
| Msa0074250 | Msa0828810 | 0.803597 | 3.230429e-49 | -8.615850e-47 |
| Msa0074250 | Msa0842220 | 0.804657 | 1.944466e-49 | -8.615850e-47 |
| Msa0074250 | Msa0900320 | 0.809437 | 1.893061e-50 | -8.615850e-47 |
| Msa0074250 | Msa1002980 | 0.812207 | 4.761531e-51 | -8.615850e-47 |
| Msa0074250 | Msa1013510 | 0.814679 | 1.362771e-51 | -8.615850e-47 |
| Msa0074250 | Msa1022310 | 0.834731 | 2.530427e-56 | -8.615850e-47 |
| Msa0074250 | Msa1027790 | 0.807704 | 4.438147e-50 | -8.615850e-47 |
| Msa0074250 | Msa1037470 | 0.800326 | 1.518876e-48 | -8.615850e-47 |
| Msa0074250 | Msa1045440 | 0.814398 | 1.572088e-51 | -8.615850e-47 |
| Msa0074250 | Msa1061180 | 0.802564 | 5.284458e-49 | -8.615850e-47 |
| Msa0074250 | Msa1067430 | 0.806928 | 6.480714e-50 | -8.615850e-47 |
| Msa0074250 | Msa1106580 | 0.818010 | 2.450402e-52 | -8.615850e-47 |
| Msa0074250 | Msa1118390 | 0.807804 | 4.226159e-50 | -8.615850e-47 |
| Msa0074250 | Msa1126310 | 0.810404 | 1.172565e-50 | -8.615850e-47 |
| Msa0074250 | Msa1130880 | 0.813828 | 2.100978e-51 | -8.615850e-47 |
| Msa0074250 | Msa1130940 | 0.806255 | 8.987820e-50 | -8.615850e-47 |
| Msa0074250 | Msa1149960 | 0.816191 | 6.280922e-52 | -8.615850e-47 |
| Msa0074250 | Msa1183760 | 0.806495 | 8.001365e-50 | -8.615850e-47 |
| Msa0074250 | Msa1208630 | 0.800117 | 1.675073e-48 | -8.615850e-47 |
| Msa0074250 | Msa1208750 | 0.820768 | 5.760366e-53 | -8.615850e-47 |
| Msa0074250 | Msa1215530 | 0.830687 | 2.552593e-55 | -8.615850e-47 |
| Msa0074250 | Msa1219250 | 0.829886 | 4.005056e-55 | -8.615850e-47 |
| Msa0074250 | Msa1228950 | 0.803117 | 4.062559e-49 | -8.615850e-47 |
| Msa0074250 | Msa1258940 | 0.803410 | 3.532650e-49 | -8.615850e-47 |
| Msa0074250 | Msa1264670 | 0.812226 | 4.716006e-51 | -8.615850e-47 |
| Msa0074250 | Msa1279700 | 0.802536 | 5.354016e-49 | -8.615850e-47 |
| Msa0074250 | Msa1324940 | 0.807453 | 5.016695e-50 | -8.615850e-47 |
| Msa0074250 | Msa1325650 | 0.810879 | 9.255787e-51 | -8.615850e-47 |
| Msa0074250 | Msa1336320 | 0.806502 | 7.973401e-50 | -8.615850e-47 |
| Msa0074250 | Msa1367810 | 0.812223 | 4.724205e-51 | -8.615850e-47 |
| Msa0074250 | Msa1375120 | 0.805164 | 1.523852e-49 | -8.615850e-47 |
| Msa0074250 | Msa1391430 | 0.818712 | 1.698854e-52 | -8.615850e-47 |
| Msa0074250 | Msa1398740 | 0.838584 | 2.636895e-57 | -8.615850e-47 |
| Msa0074250 | Msa1398840 | 0.818731 | 1.682418e-52 | -8.615850e-47 |
| Msa0074250 | Msa1404790 | 0.813957 | 1.967243e-51 | -8.615850e-47 |
| Msa0074250 | Msa1415250 | 0.806025 | 1.005198e-49 | -8.615850e-47 |
| Msa0074250 | Msa1416460 | 0.812632 | 3.846013e-51 | -8.615850e-47 |
| Msa0074250 | Msa1422490 | 0.806952 | 6.407281e-50 | -8.615850e-47 |
| Msa0074250 | Msa1423190 | 0.815287 | 9.985276e-52 | -8.615850e-47 |
| Msa0074250 | Msa1424240 | 0.811589 | 6.492196e-51 | -8.615850e-47 |
| Msa0074250 | Msa1437320 | 0.802209 | 6.252533e-49 | -8.615850e-47 |
| Msa0074250 | Msa1439800 | 0.805463 | 1.318901e-49 | -8.615850e-47 |
| Msa0074250 | Msa1449680 | 0.816471 | 5.436736e-52 | -8.615850e-47 |
| Msa0074250 | Msa1458330 | 0.802417 | 5.665953e-49 | -8.615850e-47 |
| Msa0074250 | Msa1460650 | 0.817609 | 3.016970e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0074250 | MtrunA17_Chr0c01g0489161 | 94.444 | 144 | 8 | 0 | 1 | 144 | 1 | 144 | 1.76e-91 | 262 |
| Msa0074250 | MtrunA17_Chr1g0181961 | 96.800 | 125 | 4 | 0 | 17 | 141 | 18 | 142 | 6.03e-90 | 259 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0074250 | AT5G02710.3 | 54.015 | 137 | 56 | 3 | 9 | 138 | 7 | 143 | 1.93e-50 | 159 |
| Msa0074250 | AT5G02710.2 | 54.015 | 137 | 56 | 3 | 9 | 138 | 7 | 143 | 1.93e-50 | 159 |
| Msa0074250 | AT5G02710.1 | 54.015 | 137 | 56 | 3 | 9 | 138 | 7 | 143 | 1.93e-50 | 159 |
Find 43 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGCTCTACAATAGCTTAAT+AGG | 0.218970 | 1_2:-48579869 | Msa0074250:CDS |
| TGAGTTCTTCTTTGCCTTGA+TGG | 0.310237 | 1_2:+48580339 | None:intergenic |
| TGGGCACTGACCAGAGTAAA+TGG | 0.329466 | 1_2:+48579799 | None:intergenic |
| GTTTCCACCGTCTCAAAATC+AGG | 0.352865 | 1_2:+48580365 | None:intergenic |
| TTCTTCTTTGCCTTGATGGC+AGG | 0.358090 | 1_2:+48580343 | None:intergenic |
| GCTTGTTGTAAGCTTCAAAA+AGG | 0.360348 | 1_2:-48580079 | Msa0074250:CDS |
| TAAACAGAAGAATTTCAATA+AGG | 0.371896 | 1_2:-48579626 | Msa0074250:CDS |
| GAGGTGTTTGAATCTTTGTT+TGG | 0.380094 | 1_2:-48579652 | Msa0074250:CDS |
| CATAAGGTAGTAAAATCTAA+TGG | 0.411369 | 1_2:+48580276 | None:intergenic |
| ATTTGAAAAGTGAGTGAGAA+AGG | 0.440340 | 1_2:+48579588 | None:intergenic |
| GGTGCTGCCGCCATTATCAT+TGG | 0.449696 | 1_2:-48580230 | Msa0074250:CDS |
| GAACATGTGACCAATGATAA+TGG | 0.463503 | 1_2:+48580220 | None:intergenic |
| TGGCATTGCGTGCAAGGTTG+TGG | 0.476021 | 1_2:-48580103 | Msa0074250:CDS |
| TCTTCAGGAGATGGATAAGA+AGG | 0.485774 | 1_2:+48580055 | None:intergenic |
| CGGCAGCACCAGAGTGGCGG+TGG | 0.489404 | 1_2:+48580243 | None:intergenic |
| TAATGTATACACCATCCATC+TGG | 0.496715 | 1_2:+48579845 | None:intergenic |
| ATCTCACACCACCGCCACTC+TGG | 0.504880 | 1_2:-48580251 | Msa0074250:CDS |
| CGGTGGTGTGAGATATCATA+AGG | 0.511310 | 1_2:+48580260 | None:intergenic |
| TTGTCGTGGCATTGCGTGCA+AGG | 0.513920 | 1_2:-48580109 | Msa0074250:CDS |
| AGGTTTCAGCGGCGAGAAGA+AGG | 0.522187 | 1_2:-48580134 | Msa0074250:CDS |
| AGAAAATGTTCCATTTACTC+TGG | 0.525786 | 1_2:-48579809 | Msa0074250:intron |
| AAACAAAGGCAAAACAATGC+AGG | 0.531021 | 1_2:-48580154 | Msa0074250:CDS |
| TACCGACCCTTCAGATGTTG+AGG | 0.536273 | 1_2:-48580026 | Msa0074250:intron |
| AAATGGACCTCAACATCTGA+AGG | 0.540171 | 1_2:+48580019 | None:intergenic |
| ACAGAAGAATTTCAATAAGG+AGG | 0.546703 | 1_2:-48579623 | Msa0074250:CDS |
| ATTTCAATAAGGAGGCATGC+AGG | 0.546848 | 1_2:-48579615 | Msa0074250:CDS |
| AAAATCTAATGGAGTGTGGA+AGG | 0.547037 | 1_2:+48580287 | None:intergenic |
| ACGGTGGAAACCTGCCATCA+AGG | 0.551278 | 1_2:-48580353 | Msa0074250:five_prime_UTR |
| AACAAAGATTCAAACACCTC+AGG | 0.567275 | 1_2:+48579655 | None:intergenic |
| TAGTAAAATCTAATGGAGTG+TGG | 0.575950 | 1_2:+48580283 | None:intergenic |
| AATAGCTTAATAGGACCAGA+TGG | 0.583134 | 1_2:-48579860 | Msa0074250:CDS |
| CAAAACAATGCAGGTTTCAG+CGG | 0.589943 | 1_2:-48580145 | Msa0074250:CDS |
| GACCTCAACATCTGAAGGGT+CGG | 0.594363 | 1_2:+48580024 | None:intergenic |
| ATCATTGGTCACATGTTCAG+CGG | 0.607004 | 1_2:-48580215 | Msa0074250:CDS |
| GCTTAATAGGACCAGATGGA+TGG | 0.610306 | 1_2:-48579856 | Msa0074250:CDS |
| TGGCGGCAGCACCAGAGTGG+CGG | 0.617659 | 1_2:+48580240 | None:intergenic |
| GCGTCGTCCACATACAACTA+CGG | 0.631589 | 1_2:-48580191 | Msa0074250:CDS |
| AATGGACCTCAACATCTGAA+GGG | 0.668709 | 1_2:+48580020 | None:intergenic |
| CAAACACCTCAGGCTCCGCA+CGG | 0.675793 | 1_2:+48579665 | None:intergenic |
| GCGAGAAGAAGGAATTGTCG+TGG | 0.678840 | 1_2:-48580123 | Msa0074250:CDS |
| TAATGGCGGCAGCACCAGAG+TGG | 0.679405 | 1_2:+48580237 | None:intergenic |
| TCAAAACTGACAGAAAACAA+AGG | 0.696654 | 1_2:-48580168 | Msa0074250:CDS |
| CATGTGACCAATGATAATGG+CGG | 0.801428 | 1_2:+48580223 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAAACATAGAAAACAT+AGG | + | chr1_2:48579971-48579990 | None:intergenic | 15.0% |
| !! | AATAAAAACATAGAAAACAT+AGG | + | chr1_2:48579971-48579990 | None:intergenic | 15.0% |
| !! | TTATTTATGCTTTGATTATG+TGG | - | chr1_2:48580056-48580075 | Msa0074250:CDS | 20.0% |
| !! | TTGAATGTTATGATTTCTTA+TGG | - | chr1_2:48580210-48580229 | Msa0074250:CDS | 20.0% |
| !! | TGAATGTTATGATTTCTTAT+GGG | - | chr1_2:48580211-48580230 | Msa0074250:CDS | 20.0% |
| !! | TAAACAGAAGAATTTCAATA+AGG | - | chr1_2:48580337-48580356 | Msa0074250:five_prime_UTR | 20.0% |
| !! | TTATTTATGCTTTGATTATG+TGG | - | chr1_2:48580056-48580075 | Msa0074250:CDS | 20.0% |
| !! | TTGAATGTTATGATTTCTTA+TGG | - | chr1_2:48580210-48580229 | Msa0074250:CDS | 20.0% |
| !! | TGAATGTTATGATTTCTTAT+GGG | - | chr1_2:48580211-48580230 | Msa0074250:CDS | 20.0% |
| !! | TAAACAGAAGAATTTCAATA+AGG | - | chr1_2:48580337-48580356 | Msa0074250:five_prime_UTR | 20.0% |
| ! | CATAAGGTAGTAAAATCTAA+TGG | + | chr1_2:48579690-48579709 | None:intergenic | 25.0% |
| ! | ACATAGAAAACATAGGAAAA+TGG | + | chr1_2:48579964-48579983 | None:intergenic | 25.0% |
| !! | TTAGTATTTGTCTTTTACAC+TGG | - | chr1_2:48580024-48580043 | Msa0074250:intron | 25.0% |
| ! | CATAAGGTAGTAAAATCTAA+TGG | + | chr1_2:48579690-48579709 | None:intergenic | 25.0% |
| ! | ACATAGAAAACATAGGAAAA+TGG | + | chr1_2:48579964-48579983 | None:intergenic | 25.0% |
| !! | TTAGTATTTGTCTTTTACAC+TGG | - | chr1_2:48580024-48580043 | Msa0074250:intron | 25.0% |
| !! | GATAAATCCTGATTTTGAGA+CGG | - | chr1_2:48579591-48579610 | Msa0074250:CDS | 30.0% |
| TAGTAAAATCTAATGGAGTG+TGG | + | chr1_2:48579683-48579702 | None:intergenic | 30.0% | |
| TCAAAACTGACAGAAAACAA+AGG | - | chr1_2:48579795-48579814 | Msa0074250:intron | 30.0% | |
| GTAAAAATTTCTTCAGGAGA+TGG | + | chr1_2:48579920-48579939 | None:intergenic | 30.0% | |
| AGAAAATGTTCCATTTACTC+TGG | - | chr1_2:48580154-48580173 | Msa0074250:CDS | 30.0% | |
| !! | CATTCAAAACTTTAGAGTGA+TGG | + | chr1_2:48580197-48580216 | None:intergenic | 30.0% |
| ACAGAAGAATTTCAATAAGG+AGG | - | chr1_2:48580340-48580359 | Msa0074250:five_prime_UTR | 30.0% | |
| ATTTGAAAAGTGAGTGAGAA+AGG | + | chr1_2:48580378-48580397 | None:intergenic | 30.0% | |
| !! | CTCACTCACTTTTCAAATTA+AGG | - | chr1_2:48580380-48580399 | Msa0074250:five_prime_UTR | 30.0% |
| !! | GATAAATCCTGATTTTGAGA+CGG | - | chr1_2:48579591-48579610 | Msa0074250:CDS | 30.0% |
| TAGTAAAATCTAATGGAGTG+TGG | + | chr1_2:48579683-48579702 | None:intergenic | 30.0% | |
| TCAAAACTGACAGAAAACAA+AGG | - | chr1_2:48579795-48579814 | Msa0074250:intron | 30.0% | |
| GTAAAAATTTCTTCAGGAGA+TGG | + | chr1_2:48579920-48579939 | None:intergenic | 30.0% | |
| AGAAAATGTTCCATTTACTC+TGG | - | chr1_2:48580154-48580173 | Msa0074250:CDS | 30.0% | |
| !! | CATTCAAAACTTTAGAGTGA+TGG | + | chr1_2:48580197-48580216 | None:intergenic | 30.0% |
| ACAGAAGAATTTCAATAAGG+AGG | - | chr1_2:48580340-48580359 | Msa0074250:five_prime_UTR | 30.0% | |
| ATTTGAAAAGTGAGTGAGAA+AGG | + | chr1_2:48580378-48580397 | None:intergenic | 30.0% | |
| AAAATCTAATGGAGTGTGGA+AGG | + | chr1_2:48579679-48579698 | None:intergenic | 35.0% | |
| GAACATGTGACCAATGATAA+TGG | + | chr1_2:48579746-48579765 | None:intergenic | 35.0% | |
| AAACAAAGGCAAAACAATGC+AGG | - | chr1_2:48579809-48579828 | Msa0074250:intron | 35.0% | |
| !! | GCTTGTTGTAAGCTTCAAAA+AGG | - | chr1_2:48579884-48579903 | Msa0074250:intron | 35.0% |
| ATGCTTTGATTATGTGGCAA+TGG | - | chr1_2:48580062-48580081 | Msa0074250:CDS | 35.0% | |
| CAGCTCTACAATAGCTTAAT+AGG | - | chr1_2:48580094-48580113 | Msa0074250:CDS | 35.0% | |
| AATAGCTTAATAGGACCAGA+TGG | - | chr1_2:48580103-48580122 | Msa0074250:CDS | 35.0% | |
| TAATGTATACACCATCCATC+TGG | + | chr1_2:48580121-48580140 | None:intergenic | 35.0% | |
| !! | AAAACTTTAGAGTGATGGTG+TGG | + | chr1_2:48580192-48580211 | None:intergenic | 35.0% |
| ! | TCTTATGGGAATGTTAGCTT+TGG | - | chr1_2:48580225-48580244 | Msa0074250:CDS | 35.0% |
| AACAAAGATTCAAACACCTC+AGG | + | chr1_2:48580311-48580330 | None:intergenic | 35.0% | |
| ! | GAGGTGTTTGAATCTTTGTT+TGG | - | chr1_2:48580311-48580330 | Msa0074250:five_prime_UTR | 35.0% |
| AAAATCTAATGGAGTGTGGA+AGG | + | chr1_2:48579679-48579698 | None:intergenic | 35.0% | |
| GAACATGTGACCAATGATAA+TGG | + | chr1_2:48579746-48579765 | None:intergenic | 35.0% | |
| AAACAAAGGCAAAACAATGC+AGG | - | chr1_2:48579809-48579828 | Msa0074250:intron | 35.0% | |
| !! | GCTTGTTGTAAGCTTCAAAA+AGG | - | chr1_2:48579884-48579903 | Msa0074250:intron | 35.0% |
| ATGCTTTGATTATGTGGCAA+TGG | - | chr1_2:48580062-48580081 | Msa0074250:CDS | 35.0% | |
| CAGCTCTACAATAGCTTAAT+AGG | - | chr1_2:48580094-48580113 | Msa0074250:CDS | 35.0% | |
| AATAGCTTAATAGGACCAGA+TGG | - | chr1_2:48580103-48580122 | Msa0074250:CDS | 35.0% | |
| TAATGTATACACCATCCATC+TGG | + | chr1_2:48580121-48580140 | None:intergenic | 35.0% | |
| !! | AAAACTTTAGAGTGATGGTG+TGG | + | chr1_2:48580192-48580211 | None:intergenic | 35.0% |
| ! | TCTTATGGGAATGTTAGCTT+TGG | - | chr1_2:48580225-48580244 | Msa0074250:CDS | 35.0% |
| AACAAAGATTCAAACACCTC+AGG | + | chr1_2:48580311-48580330 | None:intergenic | 35.0% | |
| ! | GAGGTGTTTGAATCTTTGTT+TGG | - | chr1_2:48580311-48580330 | Msa0074250:five_prime_UTR | 35.0% |
| !!! | AAATCCTGATTTTGAGACGG+TGG | - | chr1_2:48579594-48579613 | Msa0074250:CDS | 40.0% |
| TGAGTTCTTCTTTGCCTTGA+TGG | + | chr1_2:48579627-48579646 | None:intergenic | 40.0% | |
| ! | AGTGTGGAAGGTTTTTGTAG+AGG | + | chr1_2:48579667-48579686 | None:intergenic | 40.0% |
| !! | CATGTGACCAATGATAATGG+CGG | + | chr1_2:48579743-48579762 | None:intergenic | 40.0% |
| ATCATTGGTCACATGTTCAG+CGG | - | chr1_2:48579748-48579767 | Msa0074250:intron | 40.0% | |
| !! | GTTTTGACCGTAGTTGTATG+TGG | + | chr1_2:48579782-48579801 | None:intergenic | 40.0% |
| CAAAACAATGCAGGTTTCAG+CGG | - | chr1_2:48579818-48579837 | Msa0074250:CDS | 40.0% | |
| TCTTCAGGAGATGGATAAGA+AGG | + | chr1_2:48579911-48579930 | None:intergenic | 40.0% | |
| GGGTCGGTAAAAATTTCTTC+AGG | + | chr1_2:48579926-48579945 | None:intergenic | 40.0% | |
| AATGGACCTCAACATCTGAA+GGG | + | chr1_2:48579946-48579965 | None:intergenic | 40.0% | |
| AAATGGACCTCAACATCTGA+AGG | + | chr1_2:48579947-48579966 | None:intergenic | 40.0% | |
| ! | ATTTCAATAAGGAGGCATGC+AGG | - | chr1_2:48580348-48580367 | Msa0074250:five_prime_UTR | 40.0% |
| !!! | AAATCCTGATTTTGAGACGG+TGG | - | chr1_2:48579594-48579613 | Msa0074250:CDS | 40.0% |
| TGAGTTCTTCTTTGCCTTGA+TGG | + | chr1_2:48579627-48579646 | None:intergenic | 40.0% | |
| ! | AGTGTGGAAGGTTTTTGTAG+AGG | + | chr1_2:48579667-48579686 | None:intergenic | 40.0% |
| !! | CATGTGACCAATGATAATGG+CGG | + | chr1_2:48579743-48579762 | None:intergenic | 40.0% |
| ATCATTGGTCACATGTTCAG+CGG | - | chr1_2:48579748-48579767 | Msa0074250:intron | 40.0% | |
| !! | GTTTTGACCGTAGTTGTATG+TGG | + | chr1_2:48579782-48579801 | None:intergenic | 40.0% |
| CAAAACAATGCAGGTTTCAG+CGG | - | chr1_2:48579818-48579837 | Msa0074250:CDS | 40.0% | |
| TCTTCAGGAGATGGATAAGA+AGG | + | chr1_2:48579911-48579930 | None:intergenic | 40.0% | |
| GGGTCGGTAAAAATTTCTTC+AGG | + | chr1_2:48579926-48579945 | None:intergenic | 40.0% | |
| AATGGACCTCAACATCTGAA+GGG | + | chr1_2:48579946-48579965 | None:intergenic | 40.0% | |
| AAATGGACCTCAACATCTGA+AGG | + | chr1_2:48579947-48579966 | None:intergenic | 40.0% | |
| ! | ATTTCAATAAGGAGGCATGC+AGG | - | chr1_2:48580348-48580367 | Msa0074250:five_prime_UTR | 40.0% |
| GTTTCCACCGTCTCAAAATC+AGG | + | chr1_2:48579601-48579620 | None:intergenic | 45.0% | |
| ! | TTCTTCTTTGCCTTGATGGC+AGG | + | chr1_2:48579623-48579642 | None:intergenic | 45.0% |
| CGGTGGTGTGAGATATCATA+AGG | + | chr1_2:48579706-48579725 | None:intergenic | 45.0% | |
| GCTTAATAGGACCAGATGGA+TGG | - | chr1_2:48580107-48580126 | Msa0074250:CDS | 45.0% | |
| ! | TTAGAGTGATGGTGTGGTGT+GGG | + | chr1_2:48580186-48580205 | None:intergenic | 45.0% |
| ! | TTTAGAGTGATGGTGTGGTG+TGG | + | chr1_2:48580187-48580206 | None:intergenic | 45.0% |
| GTTTCCACCGTCTCAAAATC+AGG | + | chr1_2:48579601-48579620 | None:intergenic | 45.0% | |
| ! | TTCTTCTTTGCCTTGATGGC+AGG | + | chr1_2:48579623-48579642 | None:intergenic | 45.0% |
| CGGTGGTGTGAGATATCATA+AGG | + | chr1_2:48579706-48579725 | None:intergenic | 45.0% | |
| GCTTAATAGGACCAGATGGA+TGG | - | chr1_2:48580107-48580126 | Msa0074250:CDS | 45.0% | |
| ! | TTAGAGTGATGGTGTGGTGT+GGG | + | chr1_2:48580186-48580205 | None:intergenic | 45.0% |
| ! | TTTAGAGTGATGGTGTGGTG+TGG | + | chr1_2:48580187-48580206 | None:intergenic | 45.0% |
| GCGTCGTCCACATACAACTA+CGG | - | chr1_2:48579772-48579791 | Msa0074250:intron | 50.0% | |
| GCGAGAAGAAGGAATTGTCG+TGG | - | chr1_2:48579840-48579859 | Msa0074250:CDS | 50.0% | |
| TACCGACCCTTCAGATGTTG+AGG | - | chr1_2:48579937-48579956 | Msa0074250:intron | 50.0% | |
| GACCTCAACATCTGAAGGGT+CGG | + | chr1_2:48579942-48579961 | None:intergenic | 50.0% | |
| !! | TGGGCACTGACCAGAGTAAA+TGG | + | chr1_2:48580167-48580186 | None:intergenic | 50.0% |
| GCGTCGTCCACATACAACTA+CGG | - | chr1_2:48579772-48579791 | Msa0074250:intron | 50.0% | |
| GCGAGAAGAAGGAATTGTCG+TGG | - | chr1_2:48579840-48579859 | Msa0074250:CDS | 50.0% | |
| TACCGACCCTTCAGATGTTG+AGG | - | chr1_2:48579937-48579956 | Msa0074250:intron | 50.0% | |
| GACCTCAACATCTGAAGGGT+CGG | + | chr1_2:48579942-48579961 | None:intergenic | 50.0% | |
| !! | TGGGCACTGACCAGAGTAAA+TGG | + | chr1_2:48580167-48580186 | None:intergenic | 50.0% |
| ACGGTGGAAACCTGCCATCA+AGG | - | chr1_2:48579610-48579629 | Msa0074250:CDS | 55.0% | |
| ! | GGTGCTGCCGCCATTATCAT+TGG | - | chr1_2:48579733-48579752 | Msa0074250:intron | 55.0% |
| AGGTTTCAGCGGCGAGAAGA+AGG | - | chr1_2:48579829-48579848 | Msa0074250:CDS | 55.0% | |
| TTGTCGTGGCATTGCGTGCA+AGG | - | chr1_2:48579854-48579873 | Msa0074250:CDS | 55.0% | |
| TGGCATTGCGTGCAAGGTTG+TGG | - | chr1_2:48579860-48579879 | Msa0074250:CDS | 55.0% | |
| !! | GCGTCCGTATTTTTGCCGTG+CGG | - | chr1_2:48580283-48580302 | Msa0074250:five_prime_UTR | 55.0% |
| GGCTCCGCACGGCAAAAATA+CGG | + | chr1_2:48580290-48580309 | None:intergenic | 55.0% | |
| ACGGTGGAAACCTGCCATCA+AGG | - | chr1_2:48579610-48579629 | Msa0074250:CDS | 55.0% | |
| ! | GGTGCTGCCGCCATTATCAT+TGG | - | chr1_2:48579733-48579752 | Msa0074250:intron | 55.0% |
| AGGTTTCAGCGGCGAGAAGA+AGG | - | chr1_2:48579829-48579848 | Msa0074250:CDS | 55.0% | |
| TTGTCGTGGCATTGCGTGCA+AGG | - | chr1_2:48579854-48579873 | Msa0074250:CDS | 55.0% | |
| TGGCATTGCGTGCAAGGTTG+TGG | - | chr1_2:48579860-48579879 | Msa0074250:CDS | 55.0% | |
| !! | GCGTCCGTATTTTTGCCGTG+CGG | - | chr1_2:48580283-48580302 | Msa0074250:five_prime_UTR | 55.0% |
| GGCTCCGCACGGCAAAAATA+CGG | + | chr1_2:48580290-48580309 | None:intergenic | 55.0% | |
| ATCTCACACCACCGCCACTC+TGG | - | chr1_2:48579712-48579731 | Msa0074250:intron | 60.0% | |
| TAATGGCGGCAGCACCAGAG+TGG | + | chr1_2:48579729-48579748 | None:intergenic | 60.0% | |
| ! | TTTTTGCCGTGCGGAGCCTG+AGG | - | chr1_2:48580292-48580311 | Msa0074250:five_prime_UTR | 60.0% |
| CAAACACCTCAGGCTCCGCA+CGG | + | chr1_2:48580301-48580320 | None:intergenic | 60.0% | |
| ATCTCACACCACCGCCACTC+TGG | - | chr1_2:48579712-48579731 | Msa0074250:intron | 60.0% | |
| TAATGGCGGCAGCACCAGAG+TGG | + | chr1_2:48579729-48579748 | None:intergenic | 60.0% | |
| ! | TTTTTGCCGTGCGGAGCCTG+AGG | - | chr1_2:48580292-48580311 | Msa0074250:five_prime_UTR | 60.0% |
| CAAACACCTCAGGCTCCGCA+CGG | + | chr1_2:48580301-48580320 | None:intergenic | 60.0% | |
| TGGCGGCAGCACCAGAGTGG+CGG | + | chr1_2:48579726-48579745 | None:intergenic | 70.0% | |
| TGGCGGCAGCACCAGAGTGG+CGG | + | chr1_2:48579726-48579745 | None:intergenic | 70.0% | |
| CGGCAGCACCAGAGTGGCGG+TGG | + | chr1_2:48579723-48579742 | None:intergenic | 75.0% | |
| CGGCAGCACCAGAGTGGCGG+TGG | + | chr1_2:48579723-48579742 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 48579585 | 48580400 | 48579585 | ID=Msa0074250;Name=Msa0074250 |
| chr1_2 | mRNA | 48579585 | 48580400 | 48579585 | ID=Msa0074250-mRNA-1;Parent=Msa0074250;Name=Msa0074250-mRNA-1;_AED=0.13;_eAED=0.13;_QI=122|1|0.66|1|1|1|3|0|149 |
| chr1_2 | exon | 48579585 | 48579703 | 48579585 | ID=Msa0074250-mRNA-1:exon:14796;Parent=Msa0074250-mRNA-1 |
| chr1_2 | exon | 48579810 | 48579888 | 48579810 | ID=Msa0074250-mRNA-1:exon:14795;Parent=Msa0074250-mRNA-1 |
| chr1_2 | exon | 48580027 | 48580400 | 48580027 | ID=Msa0074250-mRNA-1:exon:14794;Parent=Msa0074250-mRNA-1 |
| chr1_2 | five_prime_UTR | 48580279 | 48580400 | 48580279 | ID=Msa0074250-mRNA-1:five_prime_utr;Parent=Msa0074250-mRNA-1 |
| chr1_2 | CDS | 48580027 | 48580278 | 48580027 | ID=Msa0074250-mRNA-1:cds;Parent=Msa0074250-mRNA-1 |
| chr1_2 | CDS | 48579810 | 48579888 | 48579810 | ID=Msa0074250-mRNA-1:cds;Parent=Msa0074250-mRNA-1 |
| chr1_2 | CDS | 48579585 | 48579703 | 48579585 | ID=Msa0074250-mRNA-1:cds;Parent=Msa0074250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
