AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0369440


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0369440 MtrunA17_Chr3g0113721 85.878 262 3 1 1 262 1 228 1.48e-159 442
Msa0369440 MtrunA17_Chr1g0198801 45.503 189 94 3 66 254 151 330 2.47e-43 150
Msa0369440 MtrunA17_Chr7g0255961 34.661 251 140 6 7 254 13 242 5.51e-41 141
Msa0369440 MtrunA17_Chr4g0041051 35.533 197 106 4 65 254 60 242 3.85e-24 97.4
Msa0369440 MtrunA17_Chr5g0412371 37.059 170 84 4 73 236 45 197 4.14e-24 96.3
Msa0369440 MtrunA17_Chr2g0325521 33.880 183 104 4 63 238 49 221 7.46e-23 94.0
Msa0369440 MtrunA17_Chr4g0045901 33.166 199 113 6 67 255 69 257 9.51e-23 94.4
Msa0369440 MtrunA17_Chr5g0427361 29.596 223 107 5 51 234 7 218 1.83e-16 76.6
Msa0369440 MtrunA17_Chr2g0283714 43.182 88 37 2 105 192 16 90 1.83e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0369440 AT2G40200.1 43.885 278 109 10 3 261 1 250 2.60e-54 176
Msa0369440 AT1G68810.1 41.538 195 98 4 66 255 167 350 5.47e-36 132
Msa0369440 AT3G25710.1 46.405 153 70 2 69 220 128 269 7.60e-34 125
Msa0369440 AT3G56770.1 36.216 185 106 4 61 243 33 207 1.61e-33 122
Msa0369440 AT2G41130.1 34.426 183 107 4 63 242 57 229 7.12e-25 99.8
Msa0369440 AT4G38070.1 33.108 148 82 3 73 220 92 222 1.64e-18 82.8

Find 51 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTGATGTTGAAGCAATTT+TGG 0.180765 3_1:-66655222 None:intergenic
TATATTAGTGCTTTGTTCTA+AGG 0.204855 3_1:+66655142 Msa0369440:CDS
ATTTCCCATTTGGATGAGTA+TGG 0.281846 3_1:+66653614 Msa0369440:exon
GTCTTAAACCTTTGAGGACT+TGG 0.282951 3_1:-66655070 None:intergenic
AGATATATAGTTTGTCCATT+AGG 0.297236 3_1:+66655429 Msa0369440:three_prime_UTR
CTTCTTATCTTGATGGTGAT+TGG 0.298433 3_1:-66653475 None:intergenic
AATATCTCTGACTCTTCTTC+TGG 0.300411 3_1:+66653747 Msa0369440:CDS
ATTAGTTCAGAGAACAATTC+TGG 0.307068 3_1:-66655047 None:intergenic
TGACCTTCTTCTTATCTTGA+TGG 0.323591 3_1:-66653482 None:intergenic
GATATATAGTTTGTCCATTA+GGG 0.324263 3_1:+66655430 Msa0369440:three_prime_UTR
AGTGCAACAAACAGTAATAT+TGG 0.329472 3_1:+66653524 Msa0369440:five_prime_UTR
TTTGGTCACTGCTGATTTAA+GGG 0.341399 3_1:-66655204 None:intergenic
TCAATCTTTCATCTCCCTAA+TGG 0.348491 3_1:-66655444 None:intergenic
TCTTCAATGCTTTCTTTATG+AGG 0.371665 3_1:-66653563 None:intergenic
TTGAAGGGAGTGTTGAAGAT+AGG 0.378452 3_1:+66653811 Msa0369440:CDS
GTATTGTATTATTTCCCATT+TGG 0.380284 3_1:+66653604 Msa0369440:five_prime_UTR
TTGTAAGTCTTAAACCTTTG+AGG 0.389696 3_1:-66655076 None:intergenic
CTCTGCTTGACTATGACTCT+TGG 0.398647 3_1:-66653847 None:intergenic
CTCTGCCTCTTACTTCTTGT+AGG 0.400975 3_1:-66655257 None:intergenic
ATGGACAAAGCAGCATTACT+AGG 0.419485 3_1:+66654831 Msa0369440:CDS
ATGCATAAAGTAAAGTAATC+AGG 0.423686 3_1:+66655544 Msa0369440:three_prime_UTR
TCTTCAACACTCCCTTCAAT+AGG 0.436660 3_1:-66653807 None:intergenic
TTTGTTCACTTTGTTAGTGT+TGG 0.440377 3_1:-66654976 None:intergenic
AAAGTGGGAAATTGAAAGCT+AGG 0.456327 3_1:+66655500 Msa0369440:three_prime_UTR
GAAGAGTCAGAGATATTATG+AGG 0.460214 3_1:-66653741 None:intergenic
TGGTTTACCTTATCAGACTT+AGG 0.468900 3_1:-66653924 None:intergenic
CAAAATTGCTTCAACATCAA+TGG 0.471398 3_1:+66655223 Msa0369440:CDS
GGCAGCATTTGAGCACAAAC+TGG 0.479615 3_1:+66653661 Msa0369440:CDS
ACTTATTCCTAAGTCTGATA+AGG 0.480745 3_1:+66653917 Msa0369440:CDS
GATACTTCATCAATTTCAGT+TGG 0.481484 3_1:-66654921 None:intergenic
TCATGGAATTTACCTATTGA+AGG 0.482372 3_1:+66653795 Msa0369440:CDS
GATCAATTGCTACTTCCAAA+TGG 0.493842 3_1:+66655572 Msa0369440:three_prime_UTR
CAGAGAAAAGACGTAGAGAC+AGG 0.494900 3_1:+66653865 Msa0369440:CDS
AGGCAAAAGCAAAGTTAAAG+TGG 0.510801 3_1:+66655484 Msa0369440:three_prime_UTR
TGAAGGGAGTGTTGAAGATA+GGG 0.514386 3_1:+66653812 Msa0369440:CDS
GCTGACATAGCAAGTGTTGG+TGG 0.516083 3_1:+66655107 Msa0369440:CDS
AATATAGTGAATTTCAGTCA+TGG 0.537343 3_1:+66653778 Msa0369440:CDS
CATGGAATTTACCTATTGAA+GGG 0.539204 3_1:+66653796 Msa0369440:CDS
ATCTGTGTAGGTACAGTCAC+AGG 0.552887 3_1:-66653714 None:intergenic
ATTGTCCTACAAGAAGTAAG+AGG 0.570567 3_1:+66655252 Msa0369440:CDS
AGATCTAAAACGAAAAGCAA+TGG 0.577531 3_1:+66654875 Msa0369440:CDS
GAACTAATCCAAGTCCTCAA+AGG 0.579974 3_1:+66655062 Msa0369440:CDS
TGGACAAAGCAGCATTACTA+GGG 0.580902 3_1:+66654832 Msa0369440:CDS
GGCAAAAGCAAAGTTAAAGT+GGG 0.581854 3_1:+66655485 Msa0369440:three_prime_UTR
TCACCATCAAGATAAGAAGA+AGG 0.589765 3_1:+66653479 Msa0369440:five_prime_UTR
AAAGCTGACATAGCAAGTGT+TGG 0.610561 3_1:+66655104 Msa0369440:CDS
TGGTTTCATCTTCAACAACA+TGG 0.610583 3_1:-66654956 None:intergenic
AATTACTATACAAAATGAGA+AGG 0.613826 3_1:-66655290 None:intergenic
TTATGAGGTAGTATCTGTGT+AGG 0.633198 3_1:-66653726 None:intergenic
GGACAAACTATATATCTCAG+AGG 0.694947 3_1:-66655423 None:intergenic
ACTACAATGATTCTTCTGAG+TGG 0.704840 3_1:+66653640 Msa0369440:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTTTTTTTTAAAAAAA+TGG + chr3_1:66654482-66654501 Msa0369440:intron 0.0%
!!! TAATTTTTTTTTTAAAAAAA+TGG + chr3_1:66654482-66654501 Msa0369440:intron 0.0%
!!! TCTATTTCTTATTGTATGTT+TGG + chr3_1:66654276-66654295 Msa0369440:intron 20.0%
!! CTGAAAATAATTTGAGAAAA+TGG - chr3_1:66654643-66654662 None:intergenic 20.0%
!!! TACAATTTTCTGCAATATTA+AGG + chr3_1:66654739-66654758 Msa0369440:intron 20.0%
!! AATTACTATACAAAATGAGA+AGG - chr3_1:66655293-66655312 None:intergenic 20.0%
!!! TCACTCCTTTTTTTTTAATT+AGG + chr3_1:66655337-66655356 Msa0369440:three_prime_UTR 20.0%
!!! TCCTTTTTTTTTAATTAGGA+GGG + chr3_1:66655341-66655360 Msa0369440:three_prime_UTR 20.0%
!!! TCTATTTCTTATTGTATGTT+TGG + chr3_1:66654276-66654295 Msa0369440:intron 20.0%
!! CTGAAAATAATTTGAGAAAA+TGG - chr3_1:66654643-66654662 None:intergenic 20.0%
!!! TACAATTTTCTGCAATATTA+AGG + chr3_1:66654739-66654758 Msa0369440:intron 20.0%
!! AATTACTATACAAAATGAGA+AGG - chr3_1:66655293-66655312 None:intergenic 20.0%
!!! TCACTCCTTTTTTTTTAATT+AGG + chr3_1:66655337-66655356 Msa0369440:three_prime_UTR 20.0%
!!! TCCTTTTTTTTTAATTAGGA+GGG + chr3_1:66655341-66655360 Msa0369440:three_prime_UTR 20.0%
! GTATTGTATTATTTCCCATT+TGG + chr3_1:66653604-66653623 Msa0369440:five_prime_UTR 25.0%
! AATATAGTGAATTTCAGTCA+TGG + chr3_1:66653778-66653797 Msa0369440:CDS 25.0%
! ACATATTTCATGCAAGAAAA+TGG + chr3_1:66654038-66654057 Msa0369440:intron 25.0%
! AAAATGGAATTAGCTACTTA+GGG + chr3_1:66654054-66654073 Msa0369440:intron 25.0%
!! CATTTTATGTAAGTTCCAAA+AGG - chr3_1:66654162-66654181 None:intergenic 25.0%
! TAACGAGTTTGACAAAATTA+GGG - chr3_1:66654194-66654213 None:intergenic 25.0%
! ATAACGAGTTTGACAAAATT+AGG - chr3_1:66654195-66654214 None:intergenic 25.0%
! TATAATTCAAAGCATGTACT+TGG + chr3_1:66654212-66654231 Msa0369440:intron 25.0%
!! ATCTAATATTTTCTCCAAGA+GGG - chr3_1:66654438-66654457 None:intergenic 25.0%
!! TCAAATATCTTATTTCGTAC+CGG - chr3_1:66654520-66654539 None:intergenic 25.0%
! ATAATTTGAGAAAATGGATG+CGG - chr3_1:66654637-66654656 None:intergenic 25.0%
! CAAATGATTATGTTATGCAA+GGG - chr3_1:66654800-66654819 None:intergenic 25.0%
! ACAAATGATTATGTTATGCA+AGG - chr3_1:66654801-66654820 None:intergenic 25.0%
!! TATATTAGTGCTTTGTTCTA+AGG + chr3_1:66655142-66655161 Msa0369440:CDS 25.0%
!!! CTCCTTTTTTTTTAATTAGG+AGG + chr3_1:66655340-66655359 Msa0369440:three_prime_UTR 25.0%
! ACCCTCCTAATTAAAAAAAA+AGG - chr3_1:66655345-66655364 None:intergenic 25.0%
!! AGATATATAGTTTGTCCATT+AGG + chr3_1:66655429-66655448 Msa0369440:three_prime_UTR 25.0%
!! GATATATAGTTTGTCCATTA+GGG + chr3_1:66655430-66655449 Msa0369440:three_prime_UTR 25.0%
!! TGATTTTGTACCACTAATTA+AGG + chr3_1:66655464-66655483 Msa0369440:three_prime_UTR 25.0%
! ATGCATAAAGTAAAGTAATC+AGG + chr3_1:66655544-66655563 Msa0369440:three_prime_UTR 25.0%
!! ATTTTATATCTCAATCGACT+GGG + chr3_1:66655611-66655630 Msa0369440:three_prime_UTR 25.0%
! GTATTGTATTATTTCCCATT+TGG + chr3_1:66653604-66653623 Msa0369440:five_prime_UTR 25.0%
! AATATAGTGAATTTCAGTCA+TGG + chr3_1:66653778-66653797 Msa0369440:CDS 25.0%
! ACATATTTCATGCAAGAAAA+TGG + chr3_1:66654038-66654057 Msa0369440:intron 25.0%
! AAAATGGAATTAGCTACTTA+GGG + chr3_1:66654054-66654073 Msa0369440:intron 25.0%
!! CATTTTATGTAAGTTCCAAA+AGG - chr3_1:66654162-66654181 None:intergenic 25.0%
! TAACGAGTTTGACAAAATTA+GGG - chr3_1:66654194-66654213 None:intergenic 25.0%
! ATAACGAGTTTGACAAAATT+AGG - chr3_1:66654195-66654214 None:intergenic 25.0%
! TATAATTCAAAGCATGTACT+TGG + chr3_1:66654212-66654231 Msa0369440:intron 25.0%
!! ATCTAATATTTTCTCCAAGA+GGG - chr3_1:66654438-66654457 None:intergenic 25.0%
!! TCAAATATCTTATTTCGTAC+CGG - chr3_1:66654520-66654539 None:intergenic 25.0%
! ATAATTTGAGAAAATGGATG+CGG - chr3_1:66654637-66654656 None:intergenic 25.0%
! CAAATGATTATGTTATGCAA+GGG - chr3_1:66654800-66654819 None:intergenic 25.0%
! ACAAATGATTATGTTATGCA+AGG - chr3_1:66654801-66654820 None:intergenic 25.0%
!! TATATTAGTGCTTTGTTCTA+AGG + chr3_1:66655142-66655161 Msa0369440:CDS 25.0%
!!! CTCCTTTTTTTTTAATTAGG+AGG + chr3_1:66655340-66655359 Msa0369440:three_prime_UTR 25.0%
! ACCCTCCTAATTAAAAAAAA+AGG - chr3_1:66655345-66655364 None:intergenic 25.0%
!! AGATATATAGTTTGTCCATT+AGG + chr3_1:66655429-66655448 Msa0369440:three_prime_UTR 25.0%
!! GATATATAGTTTGTCCATTA+GGG + chr3_1:66655430-66655449 Msa0369440:three_prime_UTR 25.0%
!! TGATTTTGTACCACTAATTA+AGG + chr3_1:66655464-66655483 Msa0369440:three_prime_UTR 25.0%
! ATGCATAAAGTAAAGTAATC+AGG + chr3_1:66655544-66655563 Msa0369440:three_prime_UTR 25.0%
AGTGCAACAAACAGTAATAT+TGG + chr3_1:66653524-66653543 Msa0369440:five_prime_UTR 30.0%
TCTTCAATGCTTTCTTTATG+AGG - chr3_1:66653566-66653585 None:intergenic 30.0%
! TTTTCCATACTCATCCAAAT+GGG - chr3_1:66653621-66653640 None:intergenic 30.0%
TCATGGAATTTACCTATTGA+AGG + chr3_1:66653795-66653814 Msa0369440:CDS 30.0%
CATGGAATTTACCTATTGAA+GGG + chr3_1:66653796-66653815 Msa0369440:CDS 30.0%
ACTTATTCCTAAGTCTGATA+AGG + chr3_1:66653917-66653936 Msa0369440:CDS 30.0%
GAAAATGGAATTAGCTACTT+AGG + chr3_1:66654053-66654072 Msa0369440:intron 30.0%
AATGCAACATCTTATCACTT+GGG - chr3_1:66654084-66654103 None:intergenic 30.0%
ATGTTGCATTCATTCAATTC+AGG + chr3_1:66654094-66654113 Msa0369440:intron 30.0%
! TTTTGACAAAAGCTACCTTT+TGG + chr3_1:66654144-66654163 Msa0369440:intron 30.0%
AGTCTTGAGTATGAACAATT+TGG + chr3_1:66654251-66654270 Msa0369440:intron 30.0%
GTCTTGAGTATGAACAATTT+GGG + chr3_1:66654252-66654271 Msa0369440:intron 30.0%
!!! ACTCAAATTTTCTAGAACCA+CGG + chr3_1:66654347-66654366 Msa0369440:intron 30.0%
! TCTAATATTTTCTCCAAGAG+GGG - chr3_1:66654437-66654456 None:intergenic 30.0%
! CATCTAATATTTTCTCCAAG+AGG - chr3_1:66654439-66654458 None:intergenic 30.0%
! ATTTTCAGTGTGTACATGTT+TGG + chr3_1:66654655-66654674 Msa0369440:intron 30.0%
! AGATCTAAAACGAAAAGCAA+TGG + chr3_1:66654875-66654894 Msa0369440:CDS 30.0%
GATACTTCATCAATTTCAGT+TGG - chr3_1:66654924-66654943 None:intergenic 30.0%
TTTGTTCACTTTGTTAGTGT+TGG - chr3_1:66654979-66654998 None:intergenic 30.0%
ATTAGTTCAGAGAACAATTC+TGG - chr3_1:66655050-66655069 None:intergenic 30.0%
TTGTAAGTCTTAAACCTTTG+AGG - chr3_1:66655079-66655098 None:intergenic 30.0%
! CATTGATGTTGAAGCAATTT+TGG - chr3_1:66655225-66655244 None:intergenic 30.0%
CAAAATTGCTTCAACATCAA+TGG + chr3_1:66655223-66655242 Msa0369440:CDS 30.0%
!! TTTGCTTTTGCCTTAATTAG+TGG - chr3_1:66655477-66655496 None:intergenic 30.0%
! AAAGTCTGTACTTTTCCATT+TGG - chr3_1:66655590-66655609 None:intergenic 30.0%
! GATTTTATATCTCAATCGAC+TGG + chr3_1:66655610-66655629 Msa0369440:three_prime_UTR 30.0%
AGTGCAACAAACAGTAATAT+TGG + chr3_1:66653524-66653543 Msa0369440:five_prime_UTR 30.0%
TCTTCAATGCTTTCTTTATG+AGG - chr3_1:66653566-66653585 None:intergenic 30.0%
! TTTTCCATACTCATCCAAAT+GGG - chr3_1:66653621-66653640 None:intergenic 30.0%
TCATGGAATTTACCTATTGA+AGG + chr3_1:66653795-66653814 Msa0369440:CDS 30.0%
CATGGAATTTACCTATTGAA+GGG + chr3_1:66653796-66653815 Msa0369440:CDS 30.0%
ACTTATTCCTAAGTCTGATA+AGG + chr3_1:66653917-66653936 Msa0369440:CDS 30.0%
GAAAATGGAATTAGCTACTT+AGG + chr3_1:66654053-66654072 Msa0369440:intron 30.0%
AATGCAACATCTTATCACTT+GGG - chr3_1:66654084-66654103 None:intergenic 30.0%
ATGTTGCATTCATTCAATTC+AGG + chr3_1:66654094-66654113 Msa0369440:intron 30.0%
! TTTTGACAAAAGCTACCTTT+TGG + chr3_1:66654144-66654163 Msa0369440:intron 30.0%
AGTCTTGAGTATGAACAATT+TGG + chr3_1:66654251-66654270 Msa0369440:intron 30.0%
GTCTTGAGTATGAACAATTT+GGG + chr3_1:66654252-66654271 Msa0369440:intron 30.0%
!!! ACTCAAATTTTCTAGAACCA+CGG + chr3_1:66654347-66654366 Msa0369440:intron 30.0%
! TCTAATATTTTCTCCAAGAG+GGG - chr3_1:66654437-66654456 None:intergenic 30.0%
! CATCTAATATTTTCTCCAAG+AGG - chr3_1:66654439-66654458 None:intergenic 30.0%
! ATTTTCAGTGTGTACATGTT+TGG + chr3_1:66654655-66654674 Msa0369440:intron 30.0%
! AGATCTAAAACGAAAAGCAA+TGG + chr3_1:66654875-66654894 Msa0369440:CDS 30.0%
GATACTTCATCAATTTCAGT+TGG - chr3_1:66654924-66654943 None:intergenic 30.0%
TTTGTTCACTTTGTTAGTGT+TGG - chr3_1:66654979-66654998 None:intergenic 30.0%
ATTAGTTCAGAGAACAATTC+TGG - chr3_1:66655050-66655069 None:intergenic 30.0%
TTGTAAGTCTTAAACCTTTG+AGG - chr3_1:66655079-66655098 None:intergenic 30.0%
! CATTGATGTTGAAGCAATTT+TGG - chr3_1:66655225-66655244 None:intergenic 30.0%
CAAAATTGCTTCAACATCAA+TGG + chr3_1:66655223-66655242 Msa0369440:CDS 30.0%
!! TTTGCTTTTGCCTTAATTAG+TGG - chr3_1:66655477-66655496 None:intergenic 30.0%
! AAAGTCTGTACTTTTCCATT+TGG - chr3_1:66655590-66655609 None:intergenic 30.0%
!! CTTCTTATCTTGATGGTGAT+TGG - chr3_1:66653478-66653497 None:intergenic 35.0%
TCACCATCAAGATAAGAAGA+AGG + chr3_1:66653479-66653498 Msa0369440:five_prime_UTR 35.0%
TGACCTTCTTCTTATCTTGA+TGG - chr3_1:66653485-66653504 None:intergenic 35.0%
ATTTCCCATTTGGATGAGTA+TGG + chr3_1:66653614-66653633 Msa0369440:exon 35.0%
! GTTTTCCATACTCATCCAAA+TGG - chr3_1:66653622-66653641 None:intergenic 35.0%
ACTACAATGATTCTTCTGAG+TGG + chr3_1:66653640-66653659 Msa0369440:CDS 35.0%
TTATGAGGTAGTATCTGTGT+AGG - chr3_1:66653729-66653748 None:intergenic 35.0%
GAAGAGTCAGAGATATTATG+AGG - chr3_1:66653744-66653763 None:intergenic 35.0%
AATATCTCTGACTCTTCTTC+TGG + chr3_1:66653747-66653766 Msa0369440:CDS 35.0%
TGGTTTACCTTATCAGACTT+AGG - chr3_1:66653927-66653946 None:intergenic 35.0%
GAATGCAACATCTTATCACT+TGG - chr3_1:66654085-66654104 None:intergenic 35.0%
TTCATTCAATTCAGGCTTTG+AGG + chr3_1:66654102-66654121 Msa0369440:intron 35.0%
! ATCAATTCCTGGTGCATTTT+TGG - chr3_1:66654406-66654425 None:intergenic 35.0%
! GCACTGATACTTCGTATTAA+AGG + chr3_1:66654559-66654578 Msa0369440:intron 35.0%
! TTAAAGGTATGTCCACTTTC+AGG + chr3_1:66654575-66654594 Msa0369440:intron 35.0%
GTCATATTAGTACCTGAAAG+TGG - chr3_1:66654590-66654609 None:intergenic 35.0%
ATCATTTGTGTACTTGCAGA+TGG + chr3_1:66654812-66654831 Msa0369440:intron 35.0%
TGGTTTCATCTTCAACAACA+TGG - chr3_1:66654959-66654978 None:intergenic 35.0%
!! TTTGGTCACTGCTGATTTAA+GGG - chr3_1:66655207-66655226 None:intergenic 35.0%
!!! TTTTGGTCACTGCTGATTTA+AGG - chr3_1:66655208-66655227 None:intergenic 35.0%
ATTGTCCTACAAGAAGTAAG+AGG + chr3_1:66655252-66655271 Msa0369440:CDS 35.0%
!!! AGGAGGGTCATTTATTTTTG+TGG + chr3_1:66655357-66655376 Msa0369440:three_prime_UTR 35.0%
!!! GGAGGGTCATTTATTTTTGT+GGG + chr3_1:66655358-66655377 Msa0369440:three_prime_UTR 35.0%
!!! GAGGGTCATTTATTTTTGTG+GGG + chr3_1:66655359-66655378 Msa0369440:three_prime_UTR 35.0%
!!! AGGGTCATTTATTTTTGTGG+GGG + chr3_1:66655360-66655379 Msa0369440:three_prime_UTR 35.0%
GGACAAACTATATATCTCAG+AGG - chr3_1:66655426-66655445 None:intergenic 35.0%
TCAATCTTTCATCTCCCTAA+TGG - chr3_1:66655447-66655466 None:intergenic 35.0%
AGGCAAAAGCAAAGTTAAAG+TGG + chr3_1:66655484-66655503 Msa0369440:three_prime_UTR 35.0%
GGCAAAAGCAAAGTTAAAGT+GGG + chr3_1:66655485-66655504 Msa0369440:three_prime_UTR 35.0%
AAAGTGGGAAATTGAAAGCT+AGG + chr3_1:66655500-66655519 Msa0369440:three_prime_UTR 35.0%
! GATCAATTGCTACTTCCAAA+TGG + chr3_1:66655572-66655591 Msa0369440:three_prime_UTR 35.0%
!! CTTCTTATCTTGATGGTGAT+TGG - chr3_1:66653478-66653497 None:intergenic 35.0%
TCACCATCAAGATAAGAAGA+AGG + chr3_1:66653479-66653498 Msa0369440:five_prime_UTR 35.0%
TGACCTTCTTCTTATCTTGA+TGG - chr3_1:66653485-66653504 None:intergenic 35.0%
ATTTCCCATTTGGATGAGTA+TGG + chr3_1:66653614-66653633 Msa0369440:exon 35.0%
! GTTTTCCATACTCATCCAAA+TGG - chr3_1:66653622-66653641 None:intergenic 35.0%
ACTACAATGATTCTTCTGAG+TGG + chr3_1:66653640-66653659 Msa0369440:CDS 35.0%
TTATGAGGTAGTATCTGTGT+AGG - chr3_1:66653729-66653748 None:intergenic 35.0%
GAAGAGTCAGAGATATTATG+AGG - chr3_1:66653744-66653763 None:intergenic 35.0%
AATATCTCTGACTCTTCTTC+TGG + chr3_1:66653747-66653766 Msa0369440:CDS 35.0%
TGGTTTACCTTATCAGACTT+AGG - chr3_1:66653927-66653946 None:intergenic 35.0%
GAATGCAACATCTTATCACT+TGG - chr3_1:66654085-66654104 None:intergenic 35.0%
TTCATTCAATTCAGGCTTTG+AGG + chr3_1:66654102-66654121 Msa0369440:intron 35.0%
! ATCAATTCCTGGTGCATTTT+TGG - chr3_1:66654406-66654425 None:intergenic 35.0%
! GCACTGATACTTCGTATTAA+AGG + chr3_1:66654559-66654578 Msa0369440:intron 35.0%
! TTAAAGGTATGTCCACTTTC+AGG + chr3_1:66654575-66654594 Msa0369440:intron 35.0%
GTCATATTAGTACCTGAAAG+TGG - chr3_1:66654590-66654609 None:intergenic 35.0%
ATCATTTGTGTACTTGCAGA+TGG + chr3_1:66654812-66654831 Msa0369440:intron 35.0%
TGGTTTCATCTTCAACAACA+TGG - chr3_1:66654959-66654978 None:intergenic 35.0%
!! TTTGGTCACTGCTGATTTAA+GGG - chr3_1:66655207-66655226 None:intergenic 35.0%
!!! TTTTGGTCACTGCTGATTTA+AGG - chr3_1:66655208-66655227 None:intergenic 35.0%
ATTGTCCTACAAGAAGTAAG+AGG + chr3_1:66655252-66655271 Msa0369440:CDS 35.0%
!!! AGGAGGGTCATTTATTTTTG+TGG + chr3_1:66655357-66655376 Msa0369440:three_prime_UTR 35.0%
!!! GGAGGGTCATTTATTTTTGT+GGG + chr3_1:66655358-66655377 Msa0369440:three_prime_UTR 35.0%
!!! GAGGGTCATTTATTTTTGTG+GGG + chr3_1:66655359-66655378 Msa0369440:three_prime_UTR 35.0%
!!! AGGGTCATTTATTTTTGTGG+GGG + chr3_1:66655360-66655379 Msa0369440:three_prime_UTR 35.0%
GGACAAACTATATATCTCAG+AGG - chr3_1:66655426-66655445 None:intergenic 35.0%
TCAATCTTTCATCTCCCTAA+TGG - chr3_1:66655447-66655466 None:intergenic 35.0%
AGGCAAAAGCAAAGTTAAAG+TGG + chr3_1:66655484-66655503 Msa0369440:three_prime_UTR 35.0%
GGCAAAAGCAAAGTTAAAGT+GGG + chr3_1:66655485-66655504 Msa0369440:three_prime_UTR 35.0%
AAAGTGGGAAATTGAAAGCT+AGG + chr3_1:66655500-66655519 Msa0369440:three_prime_UTR 35.0%
! GATCAATTGCTACTTCCAAA+TGG + chr3_1:66655572-66655591 Msa0369440:three_prime_UTR 35.0%
TCTTCAACACTCCCTTCAAT+AGG - chr3_1:66653810-66653829 None:intergenic 40.0%
!! TTGAAGGGAGTGTTGAAGAT+AGG + chr3_1:66653811-66653830 Msa0369440:CDS 40.0%
!! TGAAGGGAGTGTTGAAGATA+GGG + chr3_1:66653812-66653831 Msa0369440:CDS 40.0%
CGAGTTTGACAAAATTAGGG+TGG - chr3_1:66654191-66654210 None:intergenic 40.0%
!!! CAAATTTTCTAGAACCACGG+TGG + chr3_1:66654350-66654369 Msa0369440:intron 40.0%
ACTCAATCCAAAAATGCACC+AGG + chr3_1:66654396-66654415 Msa0369440:intron 40.0%
! TATCTTATTTCGTACCGGTG+TGG - chr3_1:66654515-66654534 None:intergenic 40.0%
AAATTGCGTTGCAGTTCTGT+CGG - chr3_1:66654768-66654787 None:intergenic 40.0%
ATGGACAAAGCAGCATTACT+AGG + chr3_1:66654831-66654850 Msa0369440:CDS 40.0%
TGGACAAAGCAGCATTACTA+GGG + chr3_1:66654832-66654851 Msa0369440:CDS 40.0%
GAACTAATCCAAGTCCTCAA+AGG + chr3_1:66655062-66655081 Msa0369440:CDS 40.0%
! GTCTTAAACCTTTGAGGACT+TGG - chr3_1:66655073-66655092 None:intergenic 40.0%
AAAGCTGACATAGCAAGTGT+TGG + chr3_1:66655104-66655123 Msa0369440:CDS 40.0%
TCTTCAACACTCCCTTCAAT+AGG - chr3_1:66653810-66653829 None:intergenic 40.0%
!! TTGAAGGGAGTGTTGAAGAT+AGG + chr3_1:66653811-66653830 Msa0369440:CDS 40.0%
!! TGAAGGGAGTGTTGAAGATA+GGG + chr3_1:66653812-66653831 Msa0369440:CDS 40.0%
CGAGTTTGACAAAATTAGGG+TGG - chr3_1:66654191-66654210 None:intergenic 40.0%
!!! CAAATTTTCTAGAACCACGG+TGG + chr3_1:66654350-66654369 Msa0369440:intron 40.0%
ACTCAATCCAAAAATGCACC+AGG + chr3_1:66654396-66654415 Msa0369440:intron 40.0%
! TATCTTATTTCGTACCGGTG+TGG - chr3_1:66654515-66654534 None:intergenic 40.0%
AAATTGCGTTGCAGTTCTGT+CGG - chr3_1:66654768-66654787 None:intergenic 40.0%
ATGGACAAAGCAGCATTACT+AGG + chr3_1:66654831-66654850 Msa0369440:CDS 40.0%
TGGACAAAGCAGCATTACTA+GGG + chr3_1:66654832-66654851 Msa0369440:CDS 40.0%
GAACTAATCCAAGTCCTCAA+AGG + chr3_1:66655062-66655081 Msa0369440:CDS 40.0%
! GTCTTAAACCTTTGAGGACT+TGG - chr3_1:66655073-66655092 None:intergenic 40.0%
AAAGCTGACATAGCAAGTGT+TGG + chr3_1:66655104-66655123 Msa0369440:CDS 40.0%
ATCTGTGTAGGTACAGTCAC+AGG - chr3_1:66653717-66653736 None:intergenic 45.0%
CTCTGCTTGACTATGACTCT+TGG - chr3_1:66653850-66653869 None:intergenic 45.0%
CAGAGAAAAGACGTAGAGAC+AGG + chr3_1:66653865-66653884 Msa0369440:CDS 45.0%
GGGAAGTGGAAATCAATTCC+TGG - chr3_1:66654417-66654436 None:intergenic 45.0%
TTGATTTCCACTTCCCCTCT+TGG + chr3_1:66654421-66654440 Msa0369440:intron 45.0%
! ATTTTCTCCAAGAGGGGAAG+TGG - chr3_1:66654431-66654450 None:intergenic 45.0%
AAAATGGTCTCCTACCACAC+CGG + chr3_1:66654498-66654517 Msa0369440:intron 45.0%
! TTATTTCGTACCGGTGTGGT+AGG - chr3_1:66654511-66654530 None:intergenic 45.0%
CGTAATTACTGAGACAGCCA+CGG - chr3_1:66654691-66654710 None:intergenic 45.0%
AATTGCGTTGCAGTTCTGTC+GGG - chr3_1:66654767-66654786 None:intergenic 45.0%
CTCTGCCTCTTACTTCTTGT+AGG - chr3_1:66655260-66655279 None:intergenic 45.0%
ATCTGTGTAGGTACAGTCAC+AGG - chr3_1:66653717-66653736 None:intergenic 45.0%
CTCTGCTTGACTATGACTCT+TGG - chr3_1:66653850-66653869 None:intergenic 45.0%
CAGAGAAAAGACGTAGAGAC+AGG + chr3_1:66653865-66653884 Msa0369440:CDS 45.0%
GGGAAGTGGAAATCAATTCC+TGG - chr3_1:66654417-66654436 None:intergenic 45.0%
TTGATTTCCACTTCCCCTCT+TGG + chr3_1:66654421-66654440 Msa0369440:intron 45.0%
! ATTTTCTCCAAGAGGGGAAG+TGG - chr3_1:66654431-66654450 None:intergenic 45.0%
AAAATGGTCTCCTACCACAC+CGG + chr3_1:66654498-66654517 Msa0369440:intron 45.0%
! TTATTTCGTACCGGTGTGGT+AGG - chr3_1:66654511-66654530 None:intergenic 45.0%
CGTAATTACTGAGACAGCCA+CGG - chr3_1:66654691-66654710 None:intergenic 45.0%
AATTGCGTTGCAGTTCTGTC+GGG - chr3_1:66654767-66654786 None:intergenic 45.0%
CTCTGCCTCTTACTTCTTGT+AGG - chr3_1:66655260-66655279 None:intergenic 45.0%
!! GAAAAAATAAAAAATAAAAT+TGG - chr3_1:66653947-66653966 None:intergenic 5.0%
!! GAAAAAATAAAAAATAAAAT+TGG - chr3_1:66653947-66653966 None:intergenic 5.0%
GGCAGCATTTGAGCACAAAC+TGG + chr3_1:66653661-66653680 Msa0369440:CDS 50.0%
AGAATAACGAGAAGCCACCG+TGG - chr3_1:66654367-66654386 None:intergenic 50.0%
!! GCTGACATAGCAAGTGTTGG+TGG + chr3_1:66655107-66655126 Msa0369440:CDS 50.0%
GGCAGCATTTGAGCACAAAC+TGG + chr3_1:66653661-66653680 Msa0369440:CDS 50.0%
AGAATAACGAGAAGCCACCG+TGG - chr3_1:66654367-66654386 None:intergenic 50.0%
!! GCTGACATAGCAAGTGTTGG+TGG + chr3_1:66655107-66655126 Msa0369440:CDS 50.0%
! TGTTTGGTGAGCAGCGTCCG+TGG + chr3_1:66654671-66654690 Msa0369440:intron 60.0%
! TGTTTGGTGAGCAGCGTCCG+TGG + chr3_1:66654671-66654690 Msa0369440:intron 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 66653457 66655632 66653457 ID=Msa0369440;Name=Msa0369440
chr3_1 mRNA 66653457 66655632 66653457 ID=Msa0369440-mRNA-1;Parent=Msa0369440;Name=Msa0369440-mRNA-1;_AED=0.01;_eAED=0.01;_QI=170|1|1|1|1|1|2|325|262
chr3_1 exon 66653457 66653938 66653457 ID=Msa0369440-mRNA-1:exon:13543;Parent=Msa0369440-mRNA-1
chr3_1 exon 66654831 66655632 66654831 ID=Msa0369440-mRNA-1:exon:13544;Parent=Msa0369440-mRNA-1
chr3_1 five_prime_UTR 66653457 66653626 66653457 ID=Msa0369440-mRNA-1:five_prime_utr;Parent=Msa0369440-mRNA-1
chr3_1 CDS 66653627 66653938 66653627 ID=Msa0369440-mRNA-1:cds;Parent=Msa0369440-mRNA-1
chr3_1 CDS 66654831 66655307 66654831 ID=Msa0369440-mRNA-1:cds;Parent=Msa0369440-mRNA-1
chr3_1 three_prime_UTR 66655308 66655632 66655308 ID=Msa0369440-mRNA-1:three_prime_utr;Parent=Msa0369440-mRNA-1
Gene Sequence

>Msa0369440

ATGAGTATGGAAAACTACAATGATTCTTCTGAGTGGCAGCATTTGAGCACAAACTGGTCTCAATACAGTAATGATCATTCACAATTTCCTGTGACTGTACCTACACAGATACTACCTCATAATATCTCTGACTCTTCTTCTGGTTCTTTTCAATATAGTGAATTTCAGTCATGGAATTTACCTATTGAAGGGAGTGTTGAAGATAGGGCAGCAAGTGCTTCCAAGAGTCATAGTCAAGCAGAGAAAAGACGTAGAGACAGGATTAATACACAGCTTGCTAATCTTAGAAAACTTATTCCTAAGTCTGATAAGATGGACAAAGCAGCATTACTAGGGAGTGTGATAGATCAAGTCAAAGATCTAAAACGAAAAGCAATGGATGTTAGCAGAGTCATCACAGTTCCAACTGAAATTGATGAAGTATCAATTGACTATAACCATGTTGTTGAAGATGAAACCAACACTAACAAAGTGAACAAATTCAAAGACAATATCATCATCAAAGCTTCTGTTTGTTGCGACGATCGACCAGAATTGTTCTCTGAACTAATCCAAGTCCTCAAAGGTTTAAGACTTACAACAGTTAAAGCTGACATAGCAAGTGTTGGTGGCAGAATCAAAAGTATATTAGTGCTTTGTTCTAAGGACAGTGAAGAAAATGTTTGCATTAATACTCTCAAACAGTCCCTTAAATCAGCAGTGACCAAAATTGCTTCAACATCAATGGTATCTAATTGTCCTACAAGAAGTAAGAGGCAGAGATTCTTTTTGCCTTCTCATTTTGTATAG

Protein sequence

>Msa0369440

MSMENYNDSSEWQHLSTNWSQYSNDHSQFPVTVPTQILPHNISDSSSGSFQYSEFQSWNLPIEGSVEDRAASASKSHSQAEKRRRDRINTQLANLRKLIPKSDKMDKAALLGSVIDQVKDLKRKAMDVSRVITVPTEIDEVSIDYNHVVEDETNTNKVNKFKDNIIIKASVCCDDRPELFSELIQVLKGLRLTTVKADIASVGGRIKSILVLCSKDSEENVCINTLKQSLKSAVTKIASTSMVSNCPTRSKRQRFFLPSHFV*