Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0987840 | XP_003619204.3 | 77.387 | 995 | 101 | 8 | 24 | 971 | 2 | 919 | 0.0 | 1492 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0987840 | A0A396HFM4 | 77.387 | 995 | 101 | 8 | 24 | 971 | 2 | 919 | 0.0 | 1492 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0045550 | Msa0987840 | 0.800614 | 1.326807e-48 | -8.615850e-47 |
| Msa0046560 | Msa0987840 | 0.807041 | 6.134289e-50 | -8.615850e-47 |
| Msa0072720 | Msa0987840 | 0.807034 | 6.157052e-50 | -8.615850e-47 |
| Msa0103790 | Msa0987840 | 0.822463 | 2.336874e-53 | -8.615850e-47 |
| Msa0106710 | Msa0987840 | 0.803418 | 3.518941e-49 | -8.615850e-47 |
| Msa0108390 | Msa0987840 | 0.808179 | 3.517660e-50 | -8.615850e-47 |
| Msa0118540 | Msa0987840 | 0.800298 | 1.538948e-48 | -8.615850e-47 |
| Msa0609220 | Msa0987840 | 0.812197 | 4.785623e-51 | -8.615850e-47 |
| Msa0638350 | Msa0987840 | 0.815432 | 9.273781e-52 | -8.615850e-47 |
| Msa0638360 | Msa0987840 | 0.814342 | 1.617599e-51 | -8.615850e-47 |
| Msa0640940 | Msa0987840 | 0.813992 | 1.932791e-51 | -8.615850e-47 |
| Msa0642970 | Msa0987840 | 0.800952 | 1.132141e-48 | -8.615850e-47 |
| Msa0652690 | Msa0987840 | 0.801064 | 1.073959e-48 | -8.615850e-47 |
| Msa0661320 | Msa0987840 | 0.803745 | 3.011221e-49 | -8.615850e-47 |
| Msa0679360 | Msa0987840 | 0.817767 | 2.779466e-52 | -8.615850e-47 |
| Msa0682680 | Msa0987840 | 0.841296 | 5.180148e-58 | -8.615850e-47 |
| Msa0690310 | Msa0987840 | 0.802092 | 6.610390e-49 | -8.615850e-47 |
| Msa0690360 | Msa0987840 | 0.813648 | 2.301859e-51 | -8.615850e-47 |
| Msa0701360 | Msa0987840 | 0.825684 | 4.098073e-54 | -8.615850e-47 |
| Msa0703440 | Msa0987840 | 0.810425 | 1.160348e-50 | -8.615850e-47 |
| Msa0705190 | Msa0987840 | 0.802564 | 5.284473e-49 | -8.615850e-47 |
| Msa0705390 | Msa0987840 | 0.801512 | 8.693416e-49 | -8.615850e-47 |
| Msa0709120 | Msa0987840 | 0.817106 | 3.916544e-52 | -8.615850e-47 |
| Msa0763890 | Msa0987840 | 0.816748 | 4.712182e-52 | -8.615850e-47 |
| Msa0763920 | Msa0987840 | 0.826095 | 3.273793e-54 | -8.615850e-47 |
| Msa0822500 | Msa0987840 | 0.818825 | 1.601002e-52 | -8.615850e-47 |
| Msa0139670 | Msa0987840 | 0.818664 | 1.741802e-52 | -8.615850e-47 |
| Msa0147980 | Msa0987840 | 0.800913 | 1.153129e-48 | -8.615850e-47 |
| Msa0150260 | Msa0987840 | 0.813575 | 2.387953e-51 | -8.615850e-47 |
| Msa0167980 | Msa0987840 | 0.803165 | 3.970452e-49 | -8.615850e-47 |
| Msa0173800 | Msa0987840 | 0.807083 | 6.011398e-50 | -8.615850e-47 |
| Msa0189040 | Msa0987840 | 0.814497 | 1.494898e-51 | -8.615850e-47 |
| Msa0202410 | Msa0987840 | 0.800098 | 1.690322e-48 | -8.615850e-47 |
| Msa0204960 | Msa0987840 | 0.809615 | 1.733917e-50 | -8.615850e-47 |
| Msa0206690 | Msa0987840 | 0.819604 | 1.064407e-52 | -8.615850e-47 |
| Msa0378970 | Msa0987840 | 0.808476 | 3.039948e-50 | -8.615850e-47 |
| Msa0382370 | Msa0987840 | 0.854956 | 8.714869e-62 | -8.615850e-47 |
| Msa0388650 | Msa0987840 | 0.803003 | 4.289388e-49 | -8.615850e-47 |
| Msa0403660 | Msa0987840 | 0.803236 | 3.839201e-49 | -8.615850e-47 |
| Msa0403770 | Msa0987840 | 0.800143 | 1.654810e-48 | -8.615850e-47 |
| Msa0432160 | Msa0987840 | 0.846377 | 2.256611e-59 | -8.615850e-47 |
| Msa0450400 | Msa0987840 | -0.830385 | 3.024832e-55 | -8.615850e-47 |
| Msa0476680 | Msa0987840 | 0.841476 | 4.644336e-58 | -8.615850e-47 |
| Msa0481970 | Msa0987840 | 0.849415 | 3.282536e-60 | -8.615850e-47 |
| Msa0482180 | Msa0987840 | 0.814847 | 1.250434e-51 | -8.615850e-47 |
| Msa0987840 | Msa0992580 | 0.818276 | 2.132724e-52 | -8.615850e-47 |
| Msa0987840 | Msa0992600 | 0.823382 | 1.427732e-53 | -8.615850e-47 |
| Msa0987840 | Msa1002960 | 0.800313 | 1.528083e-48 | -8.615850e-47 |
| Msa0987840 | Msa1011090 | 0.828813 | 7.295213e-55 | -8.615850e-47 |
| Msa0987840 | Msa1037520 | 0.812299 | 4.546427e-51 | -8.615850e-47 |
| Msa0987840 | Msa1042660 | 0.813596 | 2.362188e-51 | -8.615850e-47 |
| Msa0987840 | Msa1063420 | 0.811537 | 6.662133e-51 | -8.615850e-47 |
| Msa0987840 | Msa1072900 | 0.800555 | 1.364201e-48 | -8.615850e-47 |
| Msa0987840 | Msa1089450 | 0.819662 | 1.032542e-52 | -8.615850e-47 |
| Msa0987840 | Msa1089460 | 0.808361 | 3.215997e-50 | -8.615850e-47 |
| Msa0987840 | Msa1131490 | 0.845533 | 3.827149e-59 | -8.615850e-47 |
| Msa0987840 | Msa1173300 | 0.811162 | 8.037043e-51 | -8.615850e-47 |
| Msa0987840 | Msa1175200 | 0.825432 | 4.701740e-54 | -8.615850e-47 |
| Msa0987840 | Msa1178580 | 0.809136 | 2.196475e-50 | -8.615850e-47 |
| Msa0987840 | Msa1206650 | 0.800243 | 1.579443e-48 | -8.615850e-47 |
| Msa0987840 | Msa1209440 | 0.812771 | 3.584108e-51 | -8.615850e-47 |
| Msa0987840 | Msa1209670 | 0.801593 | 8.368789e-49 | -8.615850e-47 |
| Msa0987840 | Msa1211420 | -0.801195 | 1.009706e-48 | -8.615850e-47 |
| Msa0987840 | Msa1233850 | 0.803112 | 4.071790e-49 | -8.615850e-47 |
| Msa0987840 | Msa1240970 | 0.813424 | 2.577891e-51 | -8.615850e-47 |
| Msa0987840 | Msa1243870 | 0.802850 | 4.613326e-49 | -8.615850e-47 |
| Msa0987840 | Msa1248830 | 0.839198 | 1.828661e-57 | -8.615850e-47 |
| Msa0987840 | Msa1270420 | 0.801655 | 8.128368e-49 | -8.615850e-47 |
| Msa0987840 | Msa1276150 | 0.805798 | 1.121833e-49 | -8.615850e-47 |
| Msa0987840 | Msa1277690 | 0.804257 | 2.355850e-49 | -8.615850e-47 |
| Msa0987840 | Msa1297530 | 0.803510 | 3.367845e-49 | -8.615850e-47 |
| Msa0987840 | Msa1323690 | 0.827848 | 1.246764e-54 | -8.615850e-47 |
| Msa0987840 | Msa1342630 | 0.814548 | 1.456355e-51 | -8.615850e-47 |
| Msa0987840 | Msa1359560 | 0.815559 | 8.688423e-52 | -8.615850e-47 |
| Msa0987840 | Msa1369690 | 0.810159 | 1.324107e-50 | -8.615850e-47 |
| Msa0987840 | Msa1370590 | 0.818261 | 2.149595e-52 | -8.615850e-47 |
| Msa0987840 | Msa1376130 | 0.804961 | 1.679682e-49 | -8.615850e-47 |
| Msa0987840 | Msa1381650 | 0.809576 | 1.767735e-50 | -8.615850e-47 |
| Msa0987840 | Msa1384100 | 0.817145 | 3.838178e-52 | -8.615850e-47 |
| Msa0987840 | Msa1390700 | 0.818907 | 1.533966e-52 | -8.615850e-47 |
| Msa0987840 | Msa1392910 | 0.813620 | 2.334745e-51 | -8.615850e-47 |
| Msa0987840 | Msa1407190 | 0.802102 | 6.578134e-49 | -8.615850e-47 |
| Msa0987840 | Msa1416370 | 0.802827 | 4.663689e-49 | -8.615850e-47 |
| Msa0987840 | Msa1418240 | 0.813614 | 2.341176e-51 | -8.615850e-47 |
| Msa0987840 | Msa1428780 | 0.801832 | 7.475293e-49 | -8.615850e-47 |
| Msa0987840 | Msa1432130 | 0.802058 | 6.717700e-49 | -8.615850e-47 |
| Msa0987840 | Msa1437270 | 0.803231 | 3.848432e-49 | -8.615850e-47 |
| Msa0987840 | Msa1444120 | 0.812887 | 3.380792e-51 | -8.615850e-47 |
| Msa0987840 | Msa1447890 | 0.804206 | 2.414904e-49 | -8.615850e-47 |
| Msa0987840 | Msa1454530 | 0.801244 | 9.864767e-49 | -8.615850e-47 |
| Msa0987840 | Msa1456230 | 0.806417 | 8.312131e-50 | -8.615850e-47 |
| Msa0987840 | Msa1458340 | 0.801545 | 8.562591e-49 | -8.615850e-47 |
| Msa0240900 | Msa0987840 | 0.805793 | 1.124571e-49 | -8.615850e-47 |
| Msa0241140 | Msa0987840 | 0.800318 | 1.524478e-48 | -8.615850e-47 |
| Msa0244980 | Msa0987840 | 0.809470 | 1.862682e-50 | -8.615850e-47 |
| Msa0249580 | Msa0987840 | 0.814410 | 1.562347e-51 | -8.615850e-47 |
| Msa0257490 | Msa0987840 | 0.836287 | 1.022238e-56 | -8.615850e-47 |
| Msa0259210 | Msa0987840 | 0.823666 | 1.225198e-53 | -8.615850e-47 |
| Msa0271770 | Msa0987840 | 0.853136 | 2.916094e-61 | -8.615850e-47 |
| Msa0275020 | Msa0987840 | 0.816157 | 6.389598e-52 | -8.615850e-47 |
| Msa0279850 | Msa0987840 | 0.812861 | 3.426206e-51 | -8.615850e-47 |
| Msa0281530 | Msa0987840 | 0.804728 | 1.878955e-49 | -8.615850e-47 |
| Msa0283420 | Msa0987840 | 0.816286 | 5.980740e-52 | -8.615850e-47 |
| Msa0296790 | Msa0987840 | 0.827851 | 1.245026e-54 | -8.615850e-47 |
| Msa0296820 | Msa0987840 | 0.818682 | 1.725824e-52 | -8.615850e-47 |
| Msa0315940 | Msa0987840 | 0.817493 | 3.205082e-52 | -8.615850e-47 |
| Msa0317960 | Msa0987840 | 0.800318 | 1.524477e-48 | -8.615850e-47 |
| Msa0317970 | Msa0987840 | 0.839794 | 1.280319e-57 | -8.615850e-47 |
| Msa0322240 | Msa0987840 | 0.831989 | 1.220775e-55 | -8.615850e-47 |
| Msa0336310 | Msa0987840 | 0.815771 | 7.794219e-52 | -8.615850e-47 |
| Msa0336320 | Msa0987840 | 0.832069 | 1.166575e-55 | -8.615850e-47 |
| Msa0339910 | Msa0987840 | 0.803477 | 3.420910e-49 | -8.615850e-47 |
| Msa0343850 | Msa0987840 | 0.800054 | 1.725302e-48 | -8.615850e-47 |
| Msa0347750 | Msa0987840 | 0.816116 | 6.527784e-52 | -8.615850e-47 |
| Msa0482940 | Msa0987840 | 0.815647 | 8.304304e-52 | -8.615850e-47 |
| Msa0485240 | Msa0987840 | 0.814497 | 1.494898e-51 | -8.615850e-47 |
| Msa0491000 | Msa0987840 | 0.809490 | 1.844216e-50 | -8.615850e-47 |
| Msa0521010 | Msa0987840 | 0.845458 | 4.011929e-59 | -8.615850e-47 |
| Msa0542290 | Msa0987840 | 0.815844 | 7.506421e-52 | -8.615850e-47 |
| Msa0547160 | Msa0987840 | 0.816203 | 6.242275e-52 | -8.615850e-47 |
| Msa0600080 | Msa0987840 | 0.801808 | 7.559920e-49 | -8.615850e-47 |
| Msa0600450 | Msa0987840 | 0.813435 | 2.563142e-51 | -8.615850e-47 |
| Msa0844280 | Msa0987840 | 0.819964 | 8.806732e-53 | -8.615850e-47 |
| Msa0844420 | Msa0987840 | 0.821345 | 4.241164e-53 | -8.615850e-47 |
| Msa0877710 | Msa0987840 | 0.800631 | 1.316644e-48 | -8.615850e-47 |
| Msa0903780 | Msa0987840 | 0.833024 | 6.761635e-56 | -8.615850e-47 |
| Msa0944200 | Msa0987840 | 0.811381 | 7.204366e-51 | -8.615850e-47 |
| Msa0945240 | Msa0987840 | 0.801247 | 9.850228e-49 | -8.615850e-47 |
| Msa0974950 | Msa0987840 | 0.808395 | 3.162765e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0987840 | MtrunA17_Chr6g0467521 | 77.387 | 995 | 101 | 8 | 24 | 971 | 2 | 919 | 0.0 | 1492 |
| Msa0987840 | MtrunA17_Chr1g0202211 | 39.554 | 359 | 190 | 8 | 616 | 958 | 12 | 359 | 1.58e-70 | 239 |
| Msa0987840 | MtrunA17_Chr6g0463241 | 72.152 | 158 | 43 | 1 | 811 | 968 | 746 | 902 | 2.03e-68 | 246 |
| Msa0987840 | MtrunA17_Chr6g0463241 | 44.479 | 326 | 109 | 8 | 415 | 710 | 440 | 723 | 2.16e-55 | 207 |
| Msa0987840 | MtrunA17_Chr6g0463241 | 33.475 | 236 | 124 | 6 | 25 | 233 | 3 | 232 | 4.61e-27 | 119 |
| Msa0987840 | MtrunA17_Chr6g0463241 | 34.286 | 245 | 120 | 7 | 69 | 273 | 165 | 408 | 7.05e-26 | 115 |
| Msa0987840 | MtrunA17_Chr6g0463231 | 34.286 | 525 | 236 | 17 | 213 | 692 | 444 | 904 | 2.19e-57 | 214 |
| Msa0987840 | MtrunA17_Chr6g0463231 | 31.661 | 578 | 275 | 16 | 72 | 566 | 143 | 683 | 1.06e-48 | 187 |
| Msa0987840 | MtrunA17_Chr6g0463231 | 35.000 | 180 | 76 | 3 | 44 | 223 | 1 | 139 | 3.73e-22 | 103 |
| Msa0987840 | MtrunA17_Chr6g0463231 | 40.964 | 166 | 91 | 4 | 62 | 221 | 101 | 265 | 4.82e-22 | 102 |
| Msa0987840 | MtrunA17_Chr3g0088091 | 79.661 | 118 | 18 | 1 | 507 | 618 | 4 | 121 | 3.37e-53 | 181 |
| Msa0987840 | MtrunA17_Chr3g0088191 | 79.661 | 118 | 18 | 1 | 507 | 618 | 4 | 121 | 3.37e-53 | 181 |
| Msa0987840 | MtrunA17_Chr3g0129851 | 31.056 | 322 | 187 | 10 | 653 | 955 | 13 | 318 | 2.60e-38 | 145 |
| Msa0987840 | MtrunA17_Chr5g0448201 | 47.183 | 142 | 70 | 2 | 818 | 958 | 78 | 215 | 1.62e-35 | 134 |
| Msa0987840 | MtrunA17_Chr5g0448201 | 67.188 | 64 | 21 | 0 | 656 | 719 | 5 | 68 | 3.61e-22 | 96.3 |
| Msa0987840 | MtrunA17_Chr2g0277441 | 51.493 | 134 | 47 | 1 | 614 | 729 | 1 | 134 | 7.11e-35 | 134 |
| Msa0987840 | MtrunA17_Chr6g0467431 | 37.000 | 300 | 132 | 10 | 59 | 352 | 125 | 373 | 2.03e-34 | 140 |
| Msa0987840 | MtrunA17_Chr6g0467431 | 35.495 | 293 | 112 | 7 | 389 | 681 | 339 | 554 | 5.50e-29 | 124 |
| Msa0987840 | MtrunA17_Chr6g0467431 | 49.573 | 117 | 50 | 3 | 785 | 901 | 559 | 666 | 3.93e-25 | 112 |
| Msa0987840 | MtrunA17_Chr6g0467431 | 34.826 | 201 | 92 | 7 | 27 | 224 | 16 | 180 | 7.33e-20 | 95.1 |
| Msa0987840 | MtrunA17_Chr5g0395161 | 34.595 | 185 | 115 | 3 | 781 | 959 | 737 | 921 | 1.66e-23 | 107 |
| Msa0987840 | MtrunA17_Chr4g0021221 | 35.971 | 139 | 85 | 4 | 824 | 959 | 789 | 926 | 3.26e-21 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0987840 | AT1G43770.3 | 46.853 | 143 | 73 | 3 | 818 | 958 | 286 | 427 | 6.71e-33 | 133 |
| Msa0987840 | AT1G43770.3 | 56.000 | 50 | 21 | 1 | 655 | 703 | 8 | 57 | 1.38e-12 | 71.6 |
| Msa0987840 | AT1G43770.2 | 46.853 | 143 | 73 | 3 | 818 | 958 | 286 | 427 | 6.71e-33 | 133 |
| Msa0987840 | AT1G43770.2 | 56.000 | 50 | 21 | 1 | 655 | 703 | 8 | 57 | 1.38e-12 | 71.6 |
| Msa0987840 | AT5G16680.1 | 40.441 | 136 | 75 | 3 | 824 | 955 | 837 | 970 | 7.67e-26 | 115 |
| Msa0987840 | AT5G16680.2 | 40.441 | 136 | 75 | 3 | 824 | 955 | 837 | 970 | 7.67e-26 | 115 |
| Msa0987840 | AT3G02890.1 | 36.054 | 147 | 90 | 3 | 811 | 955 | 689 | 833 | 9.16e-24 | 108 |
| Msa0987840 | AT3G02890.2 | 36.054 | 147 | 90 | 3 | 811 | 955 | 630 | 774 | 4.16e-23 | 106 |
| Msa0987840 | AT3G02890.4 | 35.556 | 135 | 83 | 3 | 811 | 943 | 689 | 821 | 1.94e-18 | 91.3 |
| Msa0987840 | AT1G43770.1 | 42.353 | 85 | 47 | 2 | 818 | 901 | 286 | 369 | 2.52e-13 | 73.2 |
| Msa0987840 | AT1G43770.1 | 56.000 | 50 | 21 | 1 | 655 | 703 | 8 | 57 | 1.44e-12 | 70.9 |
Find 200 sgRNAs with CRISPR-Local
Find 339 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAATTTCCGGAAACTTTC+TGG | 0.060016 | 6_4:-39346624 | None:intergenic |
| AACATTCTTGTGCTTTAAAA+TGG | 0.145815 | 6_4:-39344308 | None:intergenic |
| GTAGGTTCCAAATTGAAATT+TGG | 0.193313 | 6_4:+39344124 | Msa0987840:CDS |
| GATTATTCGTTCCAAATTTC+CGG | 0.199087 | 6_4:-39346635 | None:intergenic |
| GAGATTACTGATTCAGAAAA+AGG | 0.208458 | 6_4:+39346066 | Msa0987840:CDS |
| GAGATTACTGATTCAGAAAA+AGG | 0.208458 | 6_4:+39346162 | Msa0987840:CDS |
| GAGATTACTGATTCAGAAAA+AGG | 0.208458 | 6_4:+39346258 | Msa0987840:CDS |
| CCAGAAAGTTTCCGGAAATT+TGG | 0.210995 | 6_4:+39346624 | Msa0987840:CDS |
| AGCTTCATTCCAGAAGAATT+TGG | 0.218177 | 6_4:-39343998 | None:intergenic |
| AGAGTATTTCCAAATTCTTC+TGG | 0.243371 | 6_4:+39343989 | Msa0987840:CDS |
| TGGTTCCAAGCGTGATATTA+TGG | 0.252107 | 6_4:+39344384 | Msa0987840:CDS |
| CTTGTGATGTTCTTTGCCTT+TGG | 0.275014 | 6_4:-39344707 | None:intergenic |
| AACCCCTATCATGAGGAATT+TGG | 0.282307 | 6_4:-39343301 | None:intergenic |
| CTGTGTGGCCAGAAAGTTTC+CGG | 0.287810 | 6_4:+39346616 | Msa0987840:CDS |
| ATAATCCCCAAATTTCAATT+TGG | 0.291866 | 6_4:-39344131 | None:intergenic |
| TCCAAAGGATCGCGGTTTAA+AGG | 0.297633 | 6_4:+39344261 | Msa0987840:CDS |
| CTCTTATTAGAATAGGGTTT+TGG | 0.311479 | 6_4:-39343731 | None:intergenic |
| TAGGTTCCAAATTGAAATTT+GGG | 0.313943 | 6_4:+39344125 | Msa0987840:CDS |
| CCCTTTAAACCGCGATCCTT+TGG | 0.323653 | 6_4:-39344262 | None:intergenic |
| ATTACCAAATTCCTCATGAT+AGG | 0.325546 | 6_4:+39343297 | Msa0987840:CDS |
| GGTTAATAGGGGAAGTTTGC+TGG | 0.326207 | 6_4:+39346461 | Msa0987840:intron |
| CTCCAGATTGGATCAGAAAT+AGG | 0.331134 | 6_4:-39346336 | None:intergenic |
| TTTGTCTCCTCGAGAACTTT+AGG | 0.339521 | 6_4:-39346549 | None:intergenic |
| AAATACATGAAGATGGATAA+TGG | 0.341748 | 6_4:+39344421 | Msa0987840:CDS |
| AATACATGAAGATGGATAAT+GGG | 0.343174 | 6_4:+39344422 | Msa0987840:CDS |
| CATTCTGAGGAAAGAAATAA+AGG | 0.350239 | 6_4:-39346668 | None:intergenic |
| CTTATATCAGCAAAGTCTTC+TGG | 0.366353 | 6_4:-39343647 | None:intergenic |
| TGAACCAGCATCATGTATCT+TGG | 0.369166 | 6_4:-39347172 | None:intergenic |
| TTATGCTGGTGCTAAGGATC+GGG | 0.371127 | 6_4:+39344150 | Msa0987840:CDS |
| GGTGGTTCAACCTATGAAAA+TGG | 0.372383 | 6_4:+39344021 | Msa0987840:CDS |
| TAAGCGCCTCTTATTAGAAT+AGG | 0.375362 | 6_4:-39343738 | None:intergenic |
| AAGCGCCTCTTATTAGAATA+GGG | 0.382367 | 6_4:-39343737 | None:intergenic |
| TTGTTATCGGCATAGTCTTC+CGG | 0.382730 | 6_4:-39343689 | None:intergenic |
| CAGAATTCACAACTTCTGTT+TGG | 0.383043 | 6_4:-39344825 | None:intergenic |
| CAGAAGACTTTGCTGATATA+AGG | 0.386396 | 6_4:+39343648 | Msa0987840:CDS |
| ATGTCTGCTTCAAGCACATT+AGG | 0.388418 | 6_4:-39346579 | None:intergenic |
| CAAATTTCTTACCTCCAGAT+TGG | 0.390376 | 6_4:-39346348 | None:intergenic |
| AGCTCTCATGGCAAGGTCAT+TGG | 0.395281 | 6_4:-39346955 | None:intergenic |
| GACTGAACCTGACTTATCAT+TGG | 0.401027 | 6_4:-39344479 | None:intergenic |
| TGCTAAGGATCGGGGTTTCA+AGG | 0.405459 | 6_4:+39344159 | Msa0987840:CDS |
| AGCAGTTGCACATCCTTTGC+TGG | 0.405487 | 6_4:-39346292 | None:intergenic |
| TAAGATGCATCGCAACTGTT+TGG | 0.407721 | 6_4:+39343889 | Msa0987840:CDS |
| CAATTGGTGAATGCCTCAAC+AGG | 0.410343 | 6_4:+39344763 | Msa0987840:CDS |
| CACTTATCAGCAAAGTCTTC+CGG | 0.410527 | 6_4:-39343773 | None:intergenic |
| ACCTGACTTATCATTGGTCT+CGG | 0.411914 | 6_4:-39344473 | None:intergenic |
| ACTCTACTATCTCGTCCATT+TGG | 0.417856 | 6_4:-39343971 | None:intergenic |
| AAACTTGACGCTGATGCATC+TGG | 0.418513 | 6_4:-39344877 | None:intergenic |
| AAGGTCTAAACGGAAACTTA+TGG | 0.424588 | 6_4:+39344339 | Msa0987840:CDS |
| ACATTCTTGTGCTTTAAAAT+GGG | 0.428018 | 6_4:-39344307 | None:intergenic |
| TTCAATTTGGAACCTACAGC+TGG | 0.428286 | 6_4:-39344118 | None:intergenic |
| CTCTTATCGACATAGCATTC+CGG | 0.429010 | 6_4:-39343521 | None:intergenic |
| CCAAAGGATCGCGGTTTAAA+GGG | 0.434835 | 6_4:+39344262 | Msa0987840:CDS |
| GAAAGTTCTACACGGAAACT+TGG | 0.436286 | 6_4:+39344226 | Msa0987840:CDS |
| CTAGATCCTTCAACAGGTAT+TGG | 0.436357 | 6_4:-39344637 | None:intergenic |
| TAGTGTCCCGGCATTTGATC+AGG | 0.436442 | 6_4:-39343551 | None:intergenic |
| TTTGACTGCCGACTTTGTAC+TGG | 0.438699 | 6_4:-39343839 | None:intergenic |
| TTGCCGCATCAAACGCCTAA+AGG | 0.442855 | 6_4:+39343590 | Msa0987840:CDS |
| TAATCGAAGTTCAAGTTCAA+TGG | 0.443252 | 6_4:-39343278 | None:intergenic |
| AACCTATTTCTGATCCAATC+TGG | 0.445687 | 6_4:+39346334 | Msa0987840:CDS |
| ATTATGCTGGTGCTAAGGAT+CGG | 0.448833 | 6_4:+39344149 | Msa0987840:CDS |
| TCTGGATTAAAACAACCATC+AGG | 0.449339 | 6_4:+39344589 | Msa0987840:CDS |
| GGTGTGTGGCTTCACCTAAA+AGG | 0.453148 | 6_4:+39344611 | Msa0987840:CDS |
| AAACAATTATAGAAGTGGTT+GGG | 0.455945 | 6_4:+39343205 | Msa0987840:CDS |
| ATGTGGTAAGGACTTGTTAT+CGG | 0.457574 | 6_4:-39343702 | None:intergenic |
| TCAATCAAAGTATTACTTGT+GGG | 0.458599 | 6_4:+39347122 | Msa0987840:CDS |
| AAATCTCTAGTCCAAAGATC+TGG | 0.461782 | 6_4:+39344571 | Msa0987840:CDS |
| TTTCTTGGGAGCATTGTAGA+AGG | 0.462370 | 6_4:-39347008 | None:intergenic |
| GGTTCCAAGCGTGATATTAT+GGG | 0.462595 | 6_4:+39344385 | Msa0987840:CDS |
| CAATCACTTGGAATATCAAA+GGG | 0.465021 | 6_4:+39343376 | Msa0987840:CDS |
| TCAAAACTAGATCCTTCAAC+AGG | 0.466842 | 6_4:-39344643 | None:intergenic |
| AAAACAATTATAGAAGTGGT+TGG | 0.466845 | 6_4:+39343204 | Msa0987840:CDS |
| AGTTGGCACGCTTCTGTAAG+AGG | 0.466919 | 6_4:+39343480 | Msa0987840:CDS |
| CAAAACCCTATTCTAATAAG+AGG | 0.467294 | 6_4:+39343732 | Msa0987840:CDS |
| AAAGAATGATCAGCCACAAT+TGG | 0.472789 | 6_4:+39344747 | Msa0987840:CDS |
| TGTCTTACATGTGGCGATGT+AGG | 0.476362 | 6_4:+39345222 | Msa0987840:CDS |
| ATGACCTTGCCATGAGAGCT+AGG | 0.478805 | 6_4:+39346958 | Msa0987840:CDS |
| TCATTTATGACTACTACATA+TGG | 0.479234 | 6_4:-39345991 | None:intergenic |
| TTACCAAATTCCTCATGATA+GGG | 0.481510 | 6_4:+39343298 | Msa0987840:CDS |
| AAAGTTCTACACGGAAACTT+GGG | 0.481677 | 6_4:+39344227 | Msa0987840:CDS |
| TTCCGTTTAGACCTTTCAGC+TGG | 0.484996 | 6_4:-39344331 | None:intergenic |
| TTTCAAAACAATTATAGAAG+TGG | 0.487475 | 6_4:+39343200 | Msa0987840:CDS |
| TTGAAATTTGGGGATTATGC+TGG | 0.487881 | 6_4:+39344136 | Msa0987840:CDS |
| GGAACGAATAATCTAAGCAT+TGG | 0.489375 | 6_4:+39346645 | Msa0987840:CDS |
| TGCAGACGAAAGTTCTCAAT+CGG | 0.490283 | 6_4:+39345005 | Msa0987840:CDS |
| CGGAATGCTATGTCGATAAG+AGG | 0.492079 | 6_4:+39343522 | Msa0987840:CDS |
| AGCTTTGACAAAATCATCAC+TGG | 0.492212 | 6_4:+39346495 | Msa0987840:CDS |
| TTCCAGCTGAAAGGTCTAAA+CGG | 0.495192 | 6_4:+39344329 | Msa0987840:CDS |
| CCTGACTTATCATTGGTCTC+GGG | 0.495496 | 6_4:-39344472 | None:intergenic |
| CTCTTGTGATTGTAGTGTCC+CGG | 0.497042 | 6_4:-39343563 | None:intergenic |
| TTCTCAATCGGAAGTGGAGA+TGG | 0.497579 | 6_4:+39345017 | Msa0987840:CDS |
| TATCTAGACCACGTTCAGAT+AGG | 0.499680 | 6_4:-39344906 | None:intergenic |
| CGAAAGTTCTCAATCGGAAG+TGG | 0.499707 | 6_4:+39345011 | Msa0987840:CDS |
| AAATCATTTCATCAACTAGC+TGG | 0.500573 | 6_4:-39346932 | None:intergenic |
| AAATTCTTCTGGAATGAAGC+TGG | 0.504129 | 6_4:+39344000 | Msa0987840:CDS |
| CTATGCTGATGACAATCACT+TGG | 0.505202 | 6_4:+39343364 | Msa0987840:CDS |
| GACTGAACTTGACTTAGCAT+TGG | 0.505287 | 6_4:-39344548 | None:intergenic |
| TTTATCAACCCTAGCTCTCA+TGG | 0.507615 | 6_4:-39346967 | None:intergenic |
| CAGTTACCTGATCAAATGCC+GGG | 0.514222 | 6_4:+39343545 | Msa0987840:CDS |
| GTCACCGCTATGCTGATGAT+AGG | 0.514888 | 6_4:+39343399 | Msa0987840:CDS |
| CTTTGTACTGGAGCTATAGC+AGG | 0.519983 | 6_4:-39343827 | None:intergenic |
| TCACAAGTTTCAAAATATTG+TGG | 0.520395 | 6_4:+39344723 | Msa0987840:CDS |
| AGAGACAACTAAGTTGCCTC+AGG | 0.520643 | 6_4:+39345059 | Msa0987840:CDS |
| ACAATCACTTGGAATATCAA+AGG | 0.522387 | 6_4:+39343375 | Msa0987840:CDS |
| GCCATTCGATGATTTCAGTC+GGG | 0.522617 | 6_4:+39343253 | Msa0987840:CDS |
| ATTTCTTTCCTCAGAATGAA+AGG | 0.523461 | 6_4:+39346673 | Msa0987840:CDS |
| TGCTCACCGCATCAAACGCT+GGG | 0.524435 | 6_4:+39343794 | Msa0987840:CDS |
| TGGGGATTATGCTGGTGCTA+AGG | 0.525190 | 6_4:+39344144 | Msa0987840:CDS |
| AACACTGGTGCAAAGGATGA+TGG | 0.525656 | 6_4:+39344364 | Msa0987840:CDS |
| TCTAATATGACAGACACTAC+TGG | 0.527323 | 6_4:+39344787 | Msa0987840:CDS |
| ATTGGATCAGAAATAGGTTG+TGG | 0.529705 | 6_4:-39346330 | None:intergenic |
| GGAGCTATAGCAGGAATAGT+TGG | 0.535109 | 6_4:-39343818 | None:intergenic |
| GTGCTCACCGCATCAAACGC+TGG | 0.537759 | 6_4:+39343793 | Msa0987840:CDS |
| CCCGAGACCAATGATAAGTC+AGG | 0.538183 | 6_4:+39344472 | Msa0987840:CDS |
| TTCAATCAAAGTATTACTTG+TGG | 0.538588 | 6_4:+39347121 | Msa0987840:CDS |
| GTAAAGCTTGTGCACTGCAT+AGG | 0.540182 | 6_4:+39345277 | Msa0987840:CDS |
| GTTGAGGCATTCACCAATTG+TGG | 0.541328 | 6_4:-39344760 | None:intergenic |
| ACGGAACGTAGTGTTCCAAA+TGG | 0.541412 | 6_4:+39343956 | Msa0987840:CDS |
| CGTGATATTATGGGAGCCGC+AGG | 0.541596 | 6_4:+39344394 | Msa0987840:CDS |
| AACTTTAGGACATGCTAAAG+TGG | 0.542230 | 6_4:-39346535 | None:intergenic |
| TACCAAATTCCTCATGATAG+GGG | 0.543970 | 6_4:+39343299 | Msa0987840:CDS |
| AAGGATCGGGGTTTCAAGGT+GGG | 0.547674 | 6_4:+39344163 | Msa0987840:CDS |
| AGGACACCAATACCTGTTGA+AGG | 0.547788 | 6_4:+39344631 | Msa0987840:CDS |
| CTTGACTTAGCATTGGCCAC+GGG | 0.551032 | 6_4:-39344541 | None:intergenic |
| TGCTGATGTGTGATGTGATG+AGG | 0.552890 | 6_4:-39343339 | None:intergenic |
| TGCTGATGTGTGATGTGATG+AGG | 0.552890 | 6_4:-39343423 | None:intergenic |
| TTAGGCGTTTGATGCGGCAA+AGG | 0.553257 | 6_4:-39343587 | None:intergenic |
| AGGAGATAAATACATGAAGA+TGG | 0.556252 | 6_4:+39344414 | Msa0987840:CDS |
| GTTTCAGAACTAACCTCTGA+AGG | 0.556597 | 6_4:-39344976 | None:intergenic |
| GCAGTTACCTGATCAAATGC+CGG | 0.558021 | 6_4:+39343544 | Msa0987840:CDS |
| TGCCATTCGATGATTTCAGT+CGG | 0.559379 | 6_4:+39343252 | Msa0987840:CDS |
| GCATTTACCACGTCAAAGGC+CGG | 0.560961 | 6_4:+39343502 | Msa0987840:CDS |
| GGTGAAGTCGATTCCAGCAA+AGG | 0.562633 | 6_4:+39346279 | Msa0987840:CDS |
| AAACCTCACCTTTCATTCTG+AGG | 0.563475 | 6_4:-39346681 | None:intergenic |
| AAGTCTTCTGGCGTTTGAAG+TGG | 0.564344 | 6_4:-39343635 | None:intergenic |
| GGCTCCCATAATATCACGCT+TGG | 0.566058 | 6_4:-39344389 | None:intergenic |
| TATGGATAACACTGGTGCAA+AGG | 0.568680 | 6_4:+39344357 | Msa0987840:CDS |
| AGATAGACGTGTTACTGTCA+AGG | 0.569019 | 6_4:+39342755 | Msa0987840:CDS |
| ACAAGAATGTTCCAGCTGAA+AGG | 0.570140 | 6_4:+39344320 | Msa0987840:CDS |
| GCTGATGTGTGATGTGATGA+GGG | 0.571410 | 6_4:-39343338 | None:intergenic |
| GCTGATGTGTGATGTGATGA+GGG | 0.571410 | 6_4:-39343422 | None:intergenic |
| TCAAGTATCGGAAGCAGCAG+TGG | 0.572021 | 6_4:+39344942 | Msa0987840:CDS |
| AAGTCTTCCGGTGTTTGTTG+CGG | 0.574677 | 6_4:-39343761 | None:intergenic |
| CAATCAAAGTATTACTTGTG+GGG | 0.575768 | 6_4:+39347123 | Msa0987840:CDS |
| TGAATCTGTTGACTCACTAT+CGG | 0.577030 | 6_4:-39346016 | None:intergenic |
| TGTAGTTGAACCTCAAGTAT+CGG | 0.578070 | 6_4:+39344930 | Msa0987840:CDS |
| ACTGCTGCTTCCGATACTTG+AGG | 0.580281 | 6_4:-39344940 | None:intergenic |
| ACGTTTAAAAGATCGAAAGT+TGG | 0.581119 | 6_4:+39343463 | Msa0987840:CDS |
| ATGCATCGCAACTGTTTGGA+AGG | 0.581568 | 6_4:+39343893 | Msa0987840:CDS |
| ACTTCCTTGTTGCTGAATCG+AGG | 0.581801 | 6_4:-39344094 | None:intergenic |
| AATACAGTCTCAACATGTCT+CGG | 0.583110 | 6_4:+39344666 | Msa0987840:CDS |
| TCGCCACATGTAAGACAGAC+AGG | 0.584201 | 6_4:-39345216 | None:intergenic |
| AGAGGCATTTACCACGTCAA+AGG | 0.584305 | 6_4:+39343498 | Msa0987840:CDS |
| CCAGCATCATGTATCTTGGA+TGG | 0.588280 | 6_4:-39347168 | None:intergenic |
| CCATCCAAGATACATGATGC+TGG | 0.590774 | 6_4:+39347168 | Msa0987840:CDS |
| ATACATGAAGATGGATAATG+GGG | 0.590780 | 6_4:+39344423 | Msa0987840:CDS |
| CAACCCTAGCTCTCATGGCA+AGG | 0.592452 | 6_4:-39346962 | None:intergenic |
| TGGGGATAACACTGGTCCAA+AGG | 0.593249 | 6_4:+39344246 | Msa0987840:CDS |
| TCGAATGTTATTAAAATCAA+CGG | 0.593725 | 6_4:+39343937 | Msa0987840:CDS |
| TGTAGGCTTTGAAGAGACAT+TGG | 0.594230 | 6_4:+39345239 | Msa0987840:CDS |
| CGGAAACTTATGGATAACAC+TGG | 0.598529 | 6_4:+39344349 | Msa0987840:CDS |
| GCGCTTACCGCAACAAACAC+CGG | 0.603285 | 6_4:+39343754 | Msa0987840:CDS |
| AGCTCCTCGATTCAGCAACA+AGG | 0.605895 | 6_4:+39344090 | Msa0987840:CDS |
| CTTCATGTATTTATCTCCTG+CGG | 0.606040 | 6_4:-39344410 | None:intergenic |
| GACATGCTAAAGTGGACAAG+TGG | 0.607073 | 6_4:-39346527 | None:intergenic |
| TGACCTTGCCATGAGAGCTA+GGG | 0.609714 | 6_4:+39346959 | Msa0987840:CDS |
| AGCATGTCCTAAAGTTCTCG+AGG | 0.609952 | 6_4:+39346542 | Msa0987840:CDS |
| TCCCGACTGAAATCATCGAA+TGG | 0.611736 | 6_4:-39343254 | None:intergenic |
| AAAACAACCATCAGGGTGTG+TGG | 0.612294 | 6_4:+39344597 | Msa0987840:CDS |
| GGAGATTGATGCTCCTTCAG+AGG | 0.613112 | 6_4:+39344963 | Msa0987840:CDS |
| CTATAGCTCCAGTACAAAGT+CGG | 0.614568 | 6_4:+39343831 | Msa0987840:CDS |
| CGGAAACTTGGGGATAACAC+TGG | 0.616810 | 6_4:+39344238 | Msa0987840:CDS |
| TAAGGATCGGGGTTTCAAGG+TGG | 0.618487 | 6_4:+39344162 | Msa0987840:CDS |
| GGTGAAGCCACACACCCTGA+TGG | 0.621745 | 6_4:-39344604 | None:intergenic |
| TATGCTGGTGCTAAGGATCG+GGG | 0.622076 | 6_4:+39344151 | Msa0987840:CDS |
| TAGCATTCCGGCCTTTGACG+TGG | 0.622403 | 6_4:-39343509 | None:intergenic |
| AGGTTCCAAATTGAAATTTG+GGG | 0.622685 | 6_4:+39344126 | Msa0987840:CDS |
| AAATCTCTAGTCCAAAGACC+TGG | 0.624726 | 6_4:+39344502 | Msa0987840:CDS |
| TTCTTCTGGAATGAAGCTGG+TGG | 0.638937 | 6_4:+39344003 | Msa0987840:CDS |
| AATGGCATATCATCATTGAA+CGG | 0.639837 | 6_4:-39343236 | None:intergenic |
| CTGGATTAAAACAACCATCA+GGG | 0.644575 | 6_4:+39344590 | Msa0987840:CDS |
| AACAAGGAAGTTCCAGCTGT+AGG | 0.646193 | 6_4:+39344106 | Msa0987840:CDS |
| CGGGACACTACAATCACAAG+AGG | 0.650525 | 6_4:+39343564 | Msa0987840:CDS |
| TCAGCAAAACCCCTATCATG+AGG | 0.653107 | 6_4:-39343308 | None:intergenic |
| AAGTTCTACACGGAAACTTG+GGG | 0.654698 | 6_4:+39344228 | Msa0987840:CDS |
| ATTAAAATCATCAAAACCCG+TGG | 0.655278 | 6_4:+39344525 | Msa0987840:CDS |
| GTTGGTCCCAGCGTTTGATG+CGG | 0.661463 | 6_4:-39343800 | None:intergenic |
| AAACCTTTAGGCGTTTGATG+CGG | 0.662850 | 6_4:-39343593 | None:intergenic |
| ACTTGACTTAGCATTGGCCA+CGG | 0.662978 | 6_4:-39344542 | None:intergenic |
| ATACCTGTCTGTCTTACATG+TGG | 0.664257 | 6_4:+39345213 | Msa0987840:CDS |
| TTTGGACTCTTGAGACAGTG+AGG | 0.676668 | 6_4:-39344689 | None:intergenic |
| AACACTGGTCCAAAGGATCG+CGG | 0.676994 | 6_4:+39344253 | Msa0987840:CDS |
| CTATTTCTGATCCAATCTGG+AGG | 0.679126 | 6_4:+39346337 | Msa0987840:CDS |
| TTCTGGCTGAAAGTTCTACA+CGG | 0.680017 | 6_4:+39344218 | Msa0987840:CDS |
| TGTCATATTAGAGCCTGTTG+AGG | 0.690200 | 6_4:-39344776 | None:intergenic |
| TTTGAACTCCTATCTGAACG+TGG | 0.701119 | 6_4:+39344898 | Msa0987840:CDS |
| TCACTGTCTCAAGAGTCCAA+AGG | 0.703127 | 6_4:+39344691 | Msa0987840:CDS |
| TGATTCAAAGAGAAGCTGTG+TGG | 0.722721 | 6_4:+39346601 | Msa0987840:CDS |
| GTCGACAGATTTAGACGACG+AGG | 0.726605 | 6_4:+39346218 | Msa0987840:CDS |
| AATCACTTGGAATATCAAAG+GGG | 0.727687 | 6_4:+39343377 | Msa0987840:CDS |
| AGGGCCTATCATCAGCATAG+CGG | 0.744214 | 6_4:-39343403 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTCAATATTTTTAGAATAT+GGG | - | chr6_4:39342174-39342193 | None:intergenic | 10.0% |
| !!! | CATTCAATATTTTTAGAATA+TGG | - | chr6_4:39342175-39342194 | None:intergenic | 15.0% |
| !!! | CAAATATTCCTATATTTTAA+CGG | + | chr6_4:39342256-39342275 | Msa0987840:intron | 15.0% |
| !!! | TTTTTTAACCGTTAAAATAT+AGG | - | chr6_4:39342267-39342286 | None:intergenic | 15.0% |
| !!! | ATATTGAATTTTTTACGAAA+CGG | + | chr6_4:39342600-39342619 | Msa0987840:intron | 15.0% |
| !! | TAATATTCAACTAAAAAAGT+TGG | - | chr6_4:39342897-39342916 | None:intergenic | 15.0% |
| !!! | ATCTTATTTATTAGTTAAGA+TGG | + | chr6_4:39345506-39345525 | Msa0987840:intron | 15.0% |
| !! | TATAGTGAAAATTTCTTGTT+TGG | + | chr6_4:39342355-39342374 | Msa0987840:intron | 20.0% |
| !!! | TATTGAATTTTTTACGAAAC+GGG | + | chr6_4:39342601-39342620 | Msa0987840:intron | 20.0% |
| !!! | GAATGTTAGAATTTTTTGTT+GGG | + | chr6_4:39342847-39342866 | Msa0987840:intron | 20.0% |
| !! | TTTCAAAACAATTATAGAAG+TGG | + | chr6_4:39343200-39343219 | Msa0987840:CDS | 20.0% |
| !! | TCGAATGTTATTAAAATCAA+CGG | + | chr6_4:39343937-39343956 | Msa0987840:CDS | 20.0% |
| !!! | ATATACCTTTTATGAATAAC+TGG | + | chr6_4:39345164-39345183 | Msa0987840:intron | 20.0% |
| !! | TTAATCCAGTTATTCATAAA+AGG | - | chr6_4:39345172-39345191 | None:intergenic | 20.0% |
| !! | AAATTAAAAGAAGAGAACAA+TGG | - | chr6_4:39345749-39345768 | None:intergenic | 20.0% |
| !! | TCATGTTAAGAAAAATATGA+TGG | - | chr6_4:39345828-39345847 | None:intergenic | 20.0% |
| !! | TGACTTCTATTACATTATTT+CGG | + | chr6_4:39346380-39346399 | Msa0987840:intron | 20.0% |
| !! | TTCAATCATAAAACCATATT+TGG | - | chr6_4:39346781-39346800 | None:intergenic | 20.0% |
| !!! | TTTTGATTTAATCATTTTGC+AGG | + | chr6_4:39347096-39347115 | Msa0987840:intron | 20.0% |
| !!! | TTTGATTTAATCATTTTGCA+GGG | + | chr6_4:39347097-39347116 | Msa0987840:intron | 20.0% |
| !!! | CATTTCATTTTTGAAAGCAA+AGG | + | chr6_4:39342116-39342135 | Msa0987840:CDS | 25.0% |
| !!! | CAAATTCTTCTTTTTAAAGC+AGG | + | chr6_4:39342666-39342685 | Msa0987840:intron | 25.0% |
| !!! | GGAATGTTAGAATTTTTTGT+TGG | + | chr6_4:39342846-39342865 | Msa0987840:intron | 25.0% |
| !!! | TTGTGAATGTTTTTCAAAAC+TGG | + | chr6_4:39342917-39342936 | Msa0987840:intron | 25.0% |
| !!! | TGTGAATGTTTTTCAAAACT+GGG | + | chr6_4:39342918-39342937 | Msa0987840:intron | 25.0% |
| ! | TTTGGAAGTTAAGTTTAATG+TGG | + | chr6_4:39342946-39342965 | Msa0987840:intron | 25.0% |
| !!! | TGATATAGTTTGTTTCTGAA+TGG | + | chr6_4:39342975-39342994 | Msa0987840:intron | 25.0% |
| !! | GAAACAATTGATTCATGAAA+TGG | - | chr6_4:39343092-39343111 | None:intergenic | 25.0% |
| ! | TTGTTAAGTCAAAGACATAT+TGG | + | chr6_4:39343123-39343142 | Msa0987840:intron | 25.0% |
| ! | AAAACAATTATAGAAGTGGT+TGG | + | chr6_4:39343204-39343223 | Msa0987840:CDS | 25.0% |
| ! | AAACAATTATAGAAGTGGTT+GGG | + | chr6_4:39343205-39343224 | Msa0987840:CDS | 25.0% |
| ! | TAGGTTCCAAATTGAAATTT+GGG | + | chr6_4:39344125-39344144 | Msa0987840:CDS | 25.0% |
| ! | ATAATCCCCAAATTTCAATT+TGG | - | chr6_4:39344134-39344153 | None:intergenic | 25.0% |
| !!! | ACATTCTTGTGCTTTAAAAT+GGG | - | chr6_4:39344310-39344329 | None:intergenic | 25.0% |
| !!! | AACATTCTTGTGCTTTAAAA+TGG | - | chr6_4:39344311-39344330 | None:intergenic | 25.0% |
| ! | AAATACATGAAGATGGATAA+TGG | + | chr6_4:39344421-39344440 | Msa0987840:CDS | 25.0% |
| ! | AATACATGAAGATGGATAAT+GGG | + | chr6_4:39344422-39344441 | Msa0987840:CDS | 25.0% |
| ! | TCACAAGTTTCAAAATATTG+TGG | + | chr6_4:39344723-39344742 | Msa0987840:CDS | 25.0% |
| !! | GTATTATTTGAAACTTCCTA+GGG | - | chr6_4:39345105-39345124 | None:intergenic | 25.0% |
| !! | AGTATTATTTGAAACTTCCT+AGG | - | chr6_4:39345106-39345125 | None:intergenic | 25.0% |
| !!! | TACTGTTTTTTTCTTCTTCT+CGG | + | chr6_4:39345122-39345141 | Msa0987840:intron | 25.0% |
| ! | TGTATCGTTTCAATATTCTT+TGG | - | chr6_4:39345411-39345430 | None:intergenic | 25.0% |
| !! | TTTTCGAACAAATTAAGATG+TGG | - | chr6_4:39345474-39345493 | None:intergenic | 25.0% |
| ! | TATTTATTAGTTAAGATGGC+TGG | + | chr6_4:39345510-39345529 | Msa0987840:intron | 25.0% |
| !! | TCTATTTTCTTTTTGCCATA+TGG | + | chr6_4:39345572-39345591 | Msa0987840:intron | 25.0% |
| !! | AATTTAAAAGCATGTCCATA+TGG | - | chr6_4:39345590-39345609 | None:intergenic | 25.0% |
| !! | ACATGCTTTTAAATTTCTGT+TGG | + | chr6_4:39345595-39345614 | Msa0987840:intron | 25.0% |
| !!! | CACATTCTAAAATACCTTTT+TGG | + | chr6_4:39345895-39345914 | Msa0987840:intron | 25.0% |
| !!! | TTTTCAGGTATTGTTTAGAT+GGG | + | chr6_4:39345920-39345939 | Msa0987840:intron | 25.0% |
| !! | TTTTTACGGATGAAGTTATT+TGG | + | chr6_4:39345950-39345969 | Msa0987840:CDS | 25.0% |
| ! | TCATTTATGACTACTACATA+TGG | - | chr6_4:39345994-39346013 | None:intergenic | 25.0% |
| !! | AGTTGAATTTTGTGGTTAAT+AGG | + | chr6_4:39346448-39346467 | Msa0987840:intron | 25.0% |
| !! | GTTGAATTTTGTGGTTAATA+GGG | + | chr6_4:39346449-39346468 | Msa0987840:intron | 25.0% |
| !! | TTGAATTTTGTGGTTAATAG+GGG | + | chr6_4:39346450-39346469 | Msa0987840:intron | 25.0% |
| ! | TTTGCACAAACTTAATAACA+TGG | + | chr6_4:39346702-39346721 | Msa0987840:intron | 25.0% |
| !!! | GGTTTTATGATTGAACATTA+TGG | + | chr6_4:39346786-39346805 | Msa0987840:intron | 25.0% |
| !! | ATGTTAATGTCTTTTCGATA+GGG | + | chr6_4:39346893-39346912 | Msa0987840:intron | 25.0% |
| !! | TTCAATCAAAGTATTACTTG+TGG | + | chr6_4:39347121-39347140 | Msa0987840:CDS | 25.0% |
| !! | TCAATCAAAGTATTACTTGT+GGG | + | chr6_4:39347122-39347141 | Msa0987840:CDS | 25.0% |
| AATTCCCAAATATTTAGTGC+AGG | + | chr6_4:39342287-39342306 | Msa0987840:intron | 30.0% | |
| ! | TTTTCACTATAAACCACACA+GGG | - | chr6_4:39342346-39342365 | None:intergenic | 30.0% |
| ! | ATTTTCACTATAAACCACAC+AGG | - | chr6_4:39342347-39342366 | None:intergenic | 30.0% |
| TGTAAATTGCAATTCTGCAT+GGG | + | chr6_4:39342540-39342559 | Msa0987840:intron | 30.0% | |
| AAGATGATTGTCGTAATTGT+CGG | + | chr6_4:39342825-39342844 | Msa0987840:intron | 30.0% | |
| TTGAATGCTTATTTGCAGAT+AGG | + | chr6_4:39343173-39343192 | Msa0987840:intron | 30.0% | |
| AATGGCATATCATCATTGAA+CGG | - | chr6_4:39343239-39343258 | None:intergenic | 30.0% | |
| ! | TAATCGAAGTTCAAGTTCAA+TGG | - | chr6_4:39343281-39343300 | None:intergenic | 30.0% |
| ATTACCAAATTCCTCATGAT+AGG | + | chr6_4:39343297-39343316 | Msa0987840:CDS | 30.0% | |
| TTACCAAATTCCTCATGATA+GGG | + | chr6_4:39343298-39343317 | Msa0987840:CDS | 30.0% | |
| ACAATCACTTGGAATATCAA+AGG | + | chr6_4:39343375-39343394 | Msa0987840:CDS | 30.0% | |
| CAATCACTTGGAATATCAAA+GGG | + | chr6_4:39343376-39343395 | Msa0987840:CDS | 30.0% | |
| AATCACTTGGAATATCAAAG+GGG | + | chr6_4:39343377-39343396 | Msa0987840:CDS | 30.0% | |
| ACGTTTAAAAGATCGAAAGT+TGG | + | chr6_4:39343463-39343482 | Msa0987840:CDS | 30.0% | |
| ! | CTTTTATCAGCAAAACCTTT+AGG | - | chr6_4:39343608-39343627 | None:intergenic | 30.0% |
| ! | CTCTTATTAGAATAGGGTTT+TGG | - | chr6_4:39343734-39343753 | None:intergenic | 30.0% |
| CAAAACCCTATTCTAATAAG+AGG | + | chr6_4:39343732-39343751 | Msa0987840:CDS | 30.0% | |
| ! | AGAGTATTTCCAAATTCTTC+TGG | + | chr6_4:39343989-39344008 | Msa0987840:CDS | 30.0% |
| GTAGGTTCCAAATTGAAATT+TGG | + | chr6_4:39344124-39344143 | Msa0987840:CDS | 30.0% | |
| AGGTTCCAAATTGAAATTTG+GGG | + | chr6_4:39344126-39344145 | Msa0987840:CDS | 30.0% | |
| ! | ACATTTTTCTGCTTGAAACT+AGG | - | chr6_4:39344199-39344218 | None:intergenic | 30.0% |
| TTTCAAGCAGAAAAATGTTC+TGG | + | chr6_4:39344201-39344220 | Msa0987840:CDS | 30.0% | |
| AGGAGATAAATACATGAAGA+TGG | + | chr6_4:39344414-39344433 | Msa0987840:CDS | 30.0% | |
| ATACATGAAGATGGATAATG+GGG | + | chr6_4:39344423-39344442 | Msa0987840:CDS | 30.0% | |
| !! | ATGATTTTAATCCAGGTCTT+TGG | - | chr6_4:39344516-39344535 | None:intergenic | 30.0% |
| !! | GGTTTTGATGATTTTAATCC+AGG | - | chr6_4:39344523-39344542 | None:intergenic | 30.0% |
| ATTAAAATCATCAAAACCCG+TGG | + | chr6_4:39344525-39344544 | Msa0987840:CDS | 30.0% | |
| !!! | GTTGTTTTAATCCAGATCTT+TGG | - | chr6_4:39344585-39344604 | None:intergenic | 30.0% |
| ATGCAATGCAAAATAGTAGA+TGG | - | chr6_4:39345322-39345341 | None:intergenic | 30.0% | |
| AAAATATGATGGCAAAACAC+AGG | - | chr6_4:39345817-39345836 | None:intergenic | 30.0% | |
| CATCTAAACAATACCTGAAA+AGG | - | chr6_4:39345921-39345940 | None:intergenic | 30.0% | |
| !!! | CTTTTCAGGTATTGTTTAGA+TGG | + | chr6_4:39345919-39345938 | Msa0987840:intron | 30.0% |
| !!! | TGAAGTTATTTGGTTTTGTG+AGG | + | chr6_4:39345960-39345979 | Msa0987840:CDS | 30.0% |
| !! | GAGATTACTGATTCAGAAAA+AGG | + | chr6_4:39346066-39346085 | Msa0987840:CDS | 30.0% |
| !! | GAGATTACTGATTCAGAAAA+AGG | + | chr6_4:39346066-39346085 | Msa0987840:CDS | 30.0% |
| !! | GAGATTACTGATTCAGAAAA+AGG | + | chr6_4:39346066-39346085 | Msa0987840:CDS | 30.0% |
| !! | TTGTCTGAAGTTGAATTTTG+TGG | + | chr6_4:39346440-39346459 | Msa0987840:intron | 30.0% |
| GATTATTCGTTCCAAATTTC+CGG | - | chr6_4:39346638-39346657 | None:intergenic | 30.0% | |
| ! | CATTCTGAGGAAAGAAATAA+AGG | - | chr6_4:39346671-39346690 | None:intergenic | 30.0% |
| ATTTCTTTCCTCAGAATGAA+AGG | + | chr6_4:39346673-39346692 | Msa0987840:CDS | 30.0% | |
| ! | AAGTCTTATCTCAATAAGCA+GGG | - | chr6_4:39346835-39346854 | None:intergenic | 30.0% |
| ! | AAAGTCTTATCTCAATAAGC+AGG | - | chr6_4:39346836-39346855 | None:intergenic | 30.0% |
| CTATCGAAAAGACATTAACA+TGG | - | chr6_4:39346894-39346913 | None:intergenic | 30.0% | |
| ! | CATGTTAATGTCTTTTCGAT+AGG | + | chr6_4:39346892-39346911 | Msa0987840:intron | 30.0% |
| AAATCATTTCATCAACTAGC+TGG | - | chr6_4:39346935-39346954 | None:intergenic | 30.0% | |
| ! | ACTCACTCTTGTATTTTCTT+GGG | - | chr6_4:39347025-39347044 | None:intergenic | 30.0% |
| ! | AACTCACTCTTGTATTTTCT+TGG | - | chr6_4:39347026-39347045 | None:intergenic | 30.0% |
| ! | CAATCAAAGTATTACTTGTG+GGG | + | chr6_4:39347123-39347142 | Msa0987840:CDS | 30.0% |
| TGTGCCTGCACTAAATATTT+GGG | - | chr6_4:39342294-39342313 | None:intergenic | 35.0% | |
| ATGTGCCTGCACTAAATATT+TGG | - | chr6_4:39342295-39342314 | None:intergenic | 35.0% | |
| ! | CAAAACTAAGCACATTGACT+TGG | + | chr6_4:39342412-39342431 | Msa0987840:intron | 35.0% |
| !! | TATTGTGACTTGCATTGACT+TGG | + | chr6_4:39342491-39342510 | Msa0987840:intron | 35.0% |
| CTGTAAATTGCAATTCTGCA+TGG | + | chr6_4:39342539-39342558 | Msa0987840:intron | 35.0% | |
| GTAAATTGCAATTCTGCATG+GGG | + | chr6_4:39342541-39342560 | Msa0987840:intron | 35.0% | |
| TAAATTGCAATTCTGCATGG+GGG | + | chr6_4:39342542-39342561 | Msa0987840:intron | 35.0% | |
| !! | TGAGGGTATTAGATGAATCT+TGG | + | chr6_4:39342569-39342588 | Msa0987840:intron | 35.0% |
| !! | TTTCAAAACTGGGACTAGTT+TGG | + | chr6_4:39342928-39342947 | Msa0987840:intron | 35.0% |
| TACCAAATTCCTCATGATAG+GGG | + | chr6_4:39343299-39343318 | Msa0987840:CDS | 35.0% | |
| CTTATATCAGCAAAGTCTTC+TGG | - | chr6_4:39343650-39343669 | None:intergenic | 35.0% | |
| CAGAAGACTTTGCTGATATA+AGG | + | chr6_4:39343648-39343667 | Msa0987840:CDS | 35.0% | |
| !! | ATGTGGTAAGGACTTGTTAT+CGG | - | chr6_4:39343705-39343724 | None:intergenic | 35.0% |
| AAGCGCCTCTTATTAGAATA+GGG | - | chr6_4:39343740-39343759 | None:intergenic | 35.0% | |
| TAAGCGCCTCTTATTAGAAT+AGG | - | chr6_4:39343741-39343760 | None:intergenic | 35.0% | |
| AGCTTCATTCCAGAAGAATT+TGG | - | chr6_4:39344001-39344020 | None:intergenic | 35.0% | |
| !! | AAATTCTTCTGGAATGAAGC+TGG | + | chr6_4:39344000-39344019 | Msa0987840:CDS | 35.0% |
| !!! | TTAGACTCTGCCATTTTCAT+AGG | - | chr6_4:39344034-39344053 | None:intergenic | 35.0% |
| ATGGCAGAGTCTAAGAAAAA+TGG | + | chr6_4:39344040-39344059 | Msa0987840:CDS | 35.0% | |
| TGGCAGAGTCTAAGAAAAAT+GGG | + | chr6_4:39344041-39344060 | Msa0987840:CDS | 35.0% | |
| TTGAAATTTGGGGATTATGC+TGG | + | chr6_4:39344136-39344155 | Msa0987840:CDS | 35.0% | |
| AAAGTTCTACACGGAAACTT+GGG | + | chr6_4:39344227-39344246 | Msa0987840:CDS | 35.0% | |
| AAGGTCTAAACGGAAACTTA+TGG | + | chr6_4:39344339-39344358 | Msa0987840:CDS | 35.0% | |
| CTTCATGTATTTATCTCCTG+CGG | - | chr6_4:39344413-39344432 | None:intergenic | 35.0% | |
| AAATCTCTAGTCCAAAGATC+TGG | + | chr6_4:39344571-39344590 | Msa0987840:CDS | 35.0% | |
| TCTGGATTAAAACAACCATC+AGG | + | chr6_4:39344589-39344608 | Msa0987840:CDS | 35.0% | |
| CTGGATTAAAACAACCATCA+GGG | + | chr6_4:39344590-39344609 | Msa0987840:CDS | 35.0% | |
| TCAAAACTAGATCCTTCAAC+AGG | - | chr6_4:39344646-39344665 | None:intergenic | 35.0% | |
| AATACAGTCTCAACATGTCT+CGG | + | chr6_4:39344666-39344685 | Msa0987840:CDS | 35.0% | |
| AAAGAATGATCAGCCACAAT+TGG | + | chr6_4:39344747-39344766 | Msa0987840:CDS | 35.0% | |
| TCTAATATGACAGACACTAC+TGG | + | chr6_4:39344787-39344806 | Msa0987840:CDS | 35.0% | |
| CAGAATTCACAACTTCTGTT+TGG | - | chr6_4:39344828-39344847 | None:intergenic | 35.0% | |
| TGTAGTTGAACCTCAAGTAT+CGG | + | chr6_4:39344930-39344949 | Msa0987840:CDS | 35.0% | |
| CAGAAAATGAGAAAAACCTG+AGG | - | chr6_4:39345078-39345097 | None:intergenic | 35.0% | |
| ! | ATTCTTTGGAGACACATTTC+CGG | - | chr6_4:39345397-39345416 | None:intergenic | 35.0% |
| TTAAGATGGCTGGTAAGTTA+TGG | + | chr6_4:39345520-39345539 | Msa0987840:intron | 35.0% | |
| CTCTTATAGAGTAGATGCAT+TGG | - | chr6_4:39345708-39345727 | None:intergenic | 35.0% | |
| ! | CATGAAGCTTTTGCCTTTTA+TGG | + | chr6_4:39345843-39345862 | Msa0987840:intron | 35.0% |
| AAAGCTTCCAACTCCATAAA+AGG | - | chr6_4:39345859-39345878 | None:intergenic | 35.0% | |
| !! | AATACCTTTTTGGCCTTTTC+AGG | + | chr6_4:39345905-39345924 | Msa0987840:intron | 35.0% |
| AATACCTGAAAAGGCCAAAA+AGG | - | chr6_4:39345912-39345931 | None:intergenic | 35.0% | |
| ACTTCATCCGTAAAAATGAC+AGG | - | chr6_4:39345946-39345965 | None:intergenic | 35.0% | |
| !! | TGAATCTGTTGACTCACTAT+CGG | - | chr6_4:39346019-39346038 | None:intergenic | 35.0% |
| ATTGGATCAGAAATAGGTTG+TGG | - | chr6_4:39346333-39346352 | None:intergenic | 35.0% | |
| !! | AACCTATTTCTGATCCAATC+TGG | + | chr6_4:39346334-39346353 | Msa0987840:CDS | 35.0% |
| CAAATTTCTTACCTCCAGAT+TGG | - | chr6_4:39346351-39346370 | None:intergenic | 35.0% | |
| ACTTCAGACAATGATTTCAC+AGG | - | chr6_4:39346431-39346450 | None:intergenic | 35.0% | |
| ! | AGCTTTGACAAAATCATCAC+TGG | + | chr6_4:39346495-39346514 | Msa0987840:CDS | 35.0% |
| !! | AACTTTAGGACATGCTAAAG+TGG | - | chr6_4:39346538-39346557 | None:intergenic | 35.0% |
| GGAACGAATAATCTAAGCAT+TGG | + | chr6_4:39346645-39346664 | Msa0987840:CDS | 35.0% | |
| GTTCACTACTCATCCAAATA+TGG | + | chr6_4:39346765-39346784 | Msa0987840:intron | 35.0% | |
| TTGTTGCCAATAGAGAGAAG+TGG | + | chr6_4:39342201-39342220 | Msa0987840:intron | 40.0% | |
| TGTTGCCAATAGAGAGAAGT+GGG | + | chr6_4:39342202-39342221 | Msa0987840:intron | 40.0% | |
| TCTCTTTGTAGTGTGAAGCT+AGG | + | chr6_4:39342698-39342717 | Msa0987840:intron | 40.0% | |
| ! | AGATAGACGTGTTACTGTCA+AGG | + | chr6_4:39342755-39342774 | Msa0987840:CDS | 40.0% |
| TGCCATTCGATGATTTCAGT+CGG | + | chr6_4:39343252-39343271 | Msa0987840:CDS | 40.0% | |
| AACCCCTATCATGAGGAATT+TGG | - | chr6_4:39343304-39343323 | None:intergenic | 40.0% | |
| ! | ATAGGGGTTTTGCTGATGAT+AGG | + | chr6_4:39343315-39343334 | Msa0987840:CDS | 40.0% |
| CTATGCTGATGACAATCACT+TGG | + | chr6_4:39343364-39343383 | Msa0987840:CDS | 40.0% | |
| CTCTTATCGACATAGCATTC+CGG | - | chr6_4:39343524-39343543 | None:intergenic | 40.0% | |
| AAACCTTTAGGCGTTTGATG+CGG | - | chr6_4:39343596-39343615 | None:intergenic | 40.0% | |
| GTCCTTACCACATCAAAAAC+CGG | + | chr6_4:39343670-39343689 | Msa0987840:CDS | 40.0% | |
| ! | TTCCGGTTTTTGATGTGGTA+AGG | - | chr6_4:39343675-39343694 | None:intergenic | 40.0% |
| ! | TAGTCTTCCGGTTTTTGATG+TGG | - | chr6_4:39343680-39343699 | None:intergenic | 40.0% |
| TTGTTATCGGCATAGTCTTC+CGG | - | chr6_4:39343692-39343711 | None:intergenic | 40.0% | |
| CACTTATCAGCAAAGTCTTC+CGG | - | chr6_4:39343776-39343795 | None:intergenic | 40.0% | |
| CTATAGCTCCAGTACAAAGT+CGG | + | chr6_4:39343831-39343850 | Msa0987840:CDS | 40.0% | |
| TAAGATGCATCGCAACTGTT+TGG | + | chr6_4:39343889-39343908 | Msa0987840:CDS | 40.0% | |
| ACTCTACTATCTCGTCCATT+TGG | - | chr6_4:39343974-39343993 | None:intergenic | 40.0% | |
| GGTGGTTCAACCTATGAAAA+TGG | + | chr6_4:39344021-39344040 | Msa0987840:CDS | 40.0% | |
| ! | CACGACACACATTTTCTACA+GGG | - | chr6_4:39344069-39344088 | None:intergenic | 40.0% |
| ! | TCACGACACACATTTTCTAC+AGG | - | chr6_4:39344070-39344089 | None:intergenic | 40.0% |
| ! | TTCAATTTGGAACCTACAGC+TGG | - | chr6_4:39344121-39344140 | None:intergenic | 40.0% |
| ! | ATTATGCTGGTGCTAAGGAT+CGG | + | chr6_4:39344149-39344168 | Msa0987840:CDS | 40.0% |
| ! | TTCTGGCTGAAAGTTCTACA+CGG | + | chr6_4:39344218-39344237 | Msa0987840:CDS | 40.0% |
| GAAAGTTCTACACGGAAACT+TGG | + | chr6_4:39344226-39344245 | Msa0987840:CDS | 40.0% | |
| AAGTTCTACACGGAAACTTG+GGG | + | chr6_4:39344228-39344247 | Msa0987840:CDS | 40.0% | |
| ACAAGAATGTTCCAGCTGAA+AGG | + | chr6_4:39344320-39344339 | Msa0987840:CDS | 40.0% | |
| TTCCAGCTGAAAGGTCTAAA+CGG | + | chr6_4:39344329-39344348 | Msa0987840:CDS | 40.0% | |
| CGGAAACTTATGGATAACAC+TGG | + | chr6_4:39344349-39344368 | Msa0987840:CDS | 40.0% | |
| TATGGATAACACTGGTGCAA+AGG | + | chr6_4:39344357-39344376 | Msa0987840:CDS | 40.0% | |
| TGGTTCCAAGCGTGATATTA+TGG | + | chr6_4:39344384-39344403 | Msa0987840:CDS | 40.0% | |
| GGTTCCAAGCGTGATATTAT+GGG | + | chr6_4:39344385-39344404 | Msa0987840:CDS | 40.0% | |
| !! | TCGGGTTTTGATGATTTCAC+GGG | - | chr6_4:39344457-39344476 | None:intergenic | 40.0% |
| !! | CTCGGGTTTTGATGATTTCA+CGG | - | chr6_4:39344458-39344477 | None:intergenic | 40.0% |
| ! | ACCTGACTTATCATTGGTCT+CGG | - | chr6_4:39344476-39344495 | None:intergenic | 40.0% |
| GACTGAACCTGACTTATCAT+TGG | - | chr6_4:39344482-39344501 | None:intergenic | 40.0% | |
| AAATCTCTAGTCCAAAGACC+TGG | + | chr6_4:39344502-39344521 | Msa0987840:CDS | 40.0% | |
| GACTGAACTTGACTTAGCAT+TGG | - | chr6_4:39344551-39344570 | None:intergenic | 40.0% | |
| !!! | ACAGGTATTGGTGTCCTTTT+AGG | - | chr6_4:39344628-39344647 | None:intergenic | 40.0% |
| CTAGATCCTTCAACAGGTAT+TGG | - | chr6_4:39344640-39344659 | None:intergenic | 40.0% | |
| CTTGTGATGTTCTTTGCCTT+TGG | - | chr6_4:39344710-39344729 | None:intergenic | 40.0% | |
| TGTCATATTAGAGCCTGTTG+AGG | - | chr6_4:39344779-39344798 | None:intergenic | 40.0% | |
| TTTGAACTCCTATCTGAACG+TGG | + | chr6_4:39344898-39344917 | Msa0987840:CDS | 40.0% | |
| TATCTAGACCACGTTCAGAT+AGG | - | chr6_4:39344909-39344928 | None:intergenic | 40.0% | |
| GTTTCAGAACTAACCTCTGA+AGG | - | chr6_4:39344979-39344998 | None:intergenic | 40.0% | |
| TGCAGACGAAAGTTCTCAAT+CGG | + | chr6_4:39345005-39345024 | Msa0987840:CDS | 40.0% | |
| ! | TCTCATTTTCTGACTTCCCT+AGG | + | chr6_4:39345086-39345105 | Msa0987840:intron | 40.0% |
| ATACCTGTCTGTCTTACATG+TGG | + | chr6_4:39345213-39345232 | Msa0987840:CDS | 40.0% | |
| !! | TGTAGGCTTTGAAGAGACAT+TGG | + | chr6_4:39345239-39345258 | Msa0987840:CDS | 40.0% |
| !! | CAACCACTTCTGTTTCTATC+CGG | + | chr6_4:39345375-39345394 | Msa0987840:intron | 40.0% |
| TTTCCGGATAGAAACAGAAG+TGG | - | chr6_4:39345381-39345400 | None:intergenic | 40.0% | |
| TCATTACCCTGAACCTTTCT+TGG | + | chr6_4:39345443-39345462 | Msa0987840:intron | 40.0% | |
| AGTAGATGCATTGGAAACAC+AGG | - | chr6_4:39345699-39345718 | None:intergenic | 40.0% | |
| ! | GCTTTTGCCTTTTATGGAGT+TGG | + | chr6_4:39345849-39345868 | Msa0987840:intron | 40.0% |
| TAGAATGTGAAACACTGCGA+TGG | - | chr6_4:39345884-39345903 | None:intergenic | 40.0% | |
| !!! | AGATGGGCCTGTCATTTTTA+CGG | + | chr6_4:39345936-39345955 | Msa0987840:CDS | 40.0% |
| CTCCAGATTGGATCAGAAAT+AGG | - | chr6_4:39346339-39346358 | None:intergenic | 40.0% | |
| !! | CTATTTCTGATCCAATCTGG+AGG | + | chr6_4:39346337-39346356 | Msa0987840:CDS | 40.0% |
| TTTGTCTCCTCGAGAACTTT+AGG | - | chr6_4:39346552-39346571 | None:intergenic | 40.0% | |
| ATGTCTGCTTCAAGCACATT+AGG | - | chr6_4:39346582-39346601 | None:intergenic | 40.0% | |
| CCAAATTTCCGGAAACTTTC+TGG | - | chr6_4:39346627-39346646 | None:intergenic | 40.0% | |
| CCAGAAAGTTTCCGGAAATT+TGG | + | chr6_4:39346624-39346643 | Msa0987840:CDS | 40.0% | |
| TTTCCTCAGAATGAAAGGTG+AGG | + | chr6_4:39346678-39346697 | Msa0987840:intron | 40.0% | |
| AAACCTCACCTTTCATTCTG+AGG | - | chr6_4:39346684-39346703 | None:intergenic | 40.0% | |
| ! | TTTATCAACCCTAGCTCTCA+TGG | - | chr6_4:39346970-39346989 | None:intergenic | 40.0% |
| !! | TTTCTTGGGAGCATTGTAGA+AGG | - | chr6_4:39347011-39347030 | None:intergenic | 40.0% |
| TGAACCAGCATCATGTATCT+TGG | - | chr6_4:39347175-39347194 | None:intergenic | 40.0% | |
| GTTGCCAATAGAGAGAAGTG+GGG | + | chr6_4:39342203-39342222 | Msa0987840:intron | 45.0% | |
| CACTATAAACCACACAGGGA+CGG | - | chr6_4:39342342-39342361 | None:intergenic | 45.0% | |
| TGGTGCATAGATCGATATCG+CGG | - | chr6_4:39343072-39343091 | None:intergenic | 45.0% | |
| GCCATTCGATGATTTCAGTC+GGG | + | chr6_4:39343253-39343272 | Msa0987840:CDS | 45.0% | |
| TCCCGACTGAAATCATCGAA+TGG | - | chr6_4:39343257-39343276 | None:intergenic | 45.0% | |
| TCAGCAAAACCCCTATCATG+AGG | - | chr6_4:39343311-39343330 | None:intergenic | 45.0% | |
| GCTGATGTGTGATGTGATGA+GGG | - | chr6_4:39343341-39343360 | None:intergenic | 45.0% | |
| TGCTGATGTGTGATGTGATG+AGG | - | chr6_4:39343342-39343361 | None:intergenic | 45.0% | |
| GCTGATGTGTGATGTGATGA+GGG | - | chr6_4:39343341-39343360 | None:intergenic | 45.0% | |
| TGCTGATGTGTGATGTGATG+AGG | - | chr6_4:39343342-39343361 | None:intergenic | 45.0% | |
| !! | AGAGGCATTTACCACGTCAA+AGG | + | chr6_4:39343498-39343517 | Msa0987840:CDS | 45.0% |
| CGGAATGCTATGTCGATAAG+AGG | + | chr6_4:39343522-39343541 | Msa0987840:CDS | 45.0% | |
| GCAGTTACCTGATCAAATGC+CGG | + | chr6_4:39343544-39343563 | Msa0987840:CDS | 45.0% | |
| CAGTTACCTGATCAAATGCC+GGG | + | chr6_4:39343545-39343564 | Msa0987840:CDS | 45.0% | |
| CTCTTGTGATTGTAGTGTCC+CGG | - | chr6_4:39343566-39343585 | None:intergenic | 45.0% | |
| AAGTCTTCTGGCGTTTGAAG+TGG | - | chr6_4:39343638-39343657 | None:intergenic | 45.0% | |
| ! | TTTTGGCACTCGATGTGGTA+AGG | - | chr6_4:39343717-39343736 | None:intergenic | 45.0% |
| ! | AAGTCTTCCGGTGTTTGTTG+CGG | - | chr6_4:39343764-39343783 | None:intergenic | 45.0% |
| GGAGCTATAGCAGGAATAGT+TGG | - | chr6_4:39343821-39343840 | None:intergenic | 45.0% | |
| CTTTGTACTGGAGCTATAGC+AGG | - | chr6_4:39343830-39343849 | None:intergenic | 45.0% | |
| !! | TTTGACTGCCGACTTTGTAC+TGG | - | chr6_4:39343842-39343861 | None:intergenic | 45.0% |
| ATGCATCGCAACTGTTTGGA+AGG | + | chr6_4:39343893-39343912 | Msa0987840:CDS | 45.0% | |
| ACGGAACGTAGTGTTCCAAA+TGG | + | chr6_4:39343956-39343975 | Msa0987840:CDS | 45.0% | |
| !! | TTCTTCTGGAATGAAGCTGG+TGG | + | chr6_4:39344003-39344022 | Msa0987840:CDS | 45.0% |
| ACTTCCTTGTTGCTGAATCG+AGG | - | chr6_4:39344097-39344116 | None:intergenic | 45.0% | |
| AACAAGGAAGTTCCAGCTGT+AGG | + | chr6_4:39344106-39344125 | Msa0987840:CDS | 45.0% | |
| ! | TTATGCTGGTGCTAAGGATC+GGG | + | chr6_4:39344150-39344169 | Msa0987840:CDS | 45.0% |
| TCCAAAGGATCGCGGTTTAA+AGG | + | chr6_4:39344261-39344280 | Msa0987840:CDS | 45.0% | |
| CCAAAGGATCGCGGTTTAAA+GGG | + | chr6_4:39344262-39344281 | Msa0987840:CDS | 45.0% | |
| TTCCGTTTAGACCTTTCAGC+TGG | - | chr6_4:39344334-39344353 | None:intergenic | 45.0% | |
| AACACTGGTGCAAAGGATGA+TGG | + | chr6_4:39344364-39344383 | Msa0987840:CDS | 45.0% | |
| ! | CCTGACTTATCATTGGTCTC+GGG | - | chr6_4:39344475-39344494 | None:intergenic | 45.0% |
| !! | ACTTGACTTAGCATTGGCCA+CGG | - | chr6_4:39344545-39344564 | None:intergenic | 45.0% |
| AAAACAACCATCAGGGTGTG+TGG | + | chr6_4:39344597-39344616 | Msa0987840:CDS | 45.0% | |
| AGGACACCAATACCTGTTGA+AGG | + | chr6_4:39344631-39344650 | Msa0987840:CDS | 45.0% | |
| TTTGGACTCTTGAGACAGTG+AGG | - | chr6_4:39344692-39344711 | None:intergenic | 45.0% | |
| TCACTGTCTCAAGAGTCCAA+AGG | + | chr6_4:39344691-39344710 | Msa0987840:CDS | 45.0% | |
| ! | GTTGAGGCATTCACCAATTG+TGG | - | chr6_4:39344763-39344782 | None:intergenic | 45.0% |
| CAATTGGTGAATGCCTCAAC+AGG | + | chr6_4:39344763-39344782 | Msa0987840:CDS | 45.0% | |
| AAACTTGACGCTGATGCATC+TGG | - | chr6_4:39344880-39344899 | None:intergenic | 45.0% | |
| CGAAAGTTCTCAATCGGAAG+TGG | + | chr6_4:39345011-39345030 | Msa0987840:CDS | 45.0% | |
| TTCTCAATCGGAAGTGGAGA+TGG | + | chr6_4:39345017-39345036 | Msa0987840:CDS | 45.0% | |
| AGAGACAACTAAGTTGCCTC+AGG | + | chr6_4:39345059-39345078 | Msa0987840:CDS | 45.0% | |
| GACAGGTATCTGCAACAAGT+AGG | - | chr6_4:39345202-39345221 | None:intergenic | 45.0% | |
| TGTCTTACATGTGGCGATGT+AGG | + | chr6_4:39345222-39345241 | Msa0987840:CDS | 45.0% | |
| GTAAAGCTTGTGCACTGCAT+AGG | + | chr6_4:39345277-39345296 | Msa0987840:CDS | 45.0% | |
| GTCAGTCCAAGAAAGGTTCA+GGG | - | chr6_4:39345452-39345471 | None:intergenic | 45.0% | |
| AGATGTGGTCAGTCCAAGAA+AGG | - | chr6_4:39345459-39345478 | None:intergenic | 45.0% | |
| ACAGGAGCAATGGAAGTTCA+TGG | - | chr6_4:39345799-39345818 | None:intergenic | 45.0% | |
| ATGGCAAAACACAGGAGCAA+TGG | - | chr6_4:39345809-39345828 | None:intergenic | 45.0% | |
| GGTTAATAGGGGAAGTTTGC+TGG | + | chr6_4:39346461-39346480 | Msa0987840:intron | 45.0% | |
| GACATGCTAAAGTGGACAAG+TGG | - | chr6_4:39346530-39346549 | None:intergenic | 45.0% | |
| AGCATGTCCTAAAGTTCTCG+AGG | + | chr6_4:39346542-39346561 | Msa0987840:CDS | 45.0% | |
| AATAAGCAGGGTTCGCTACA+TGG | - | chr6_4:39346823-39346842 | None:intergenic | 45.0% | |
| CCAGCATCATGTATCTTGGA+TGG | - | chr6_4:39347171-39347190 | None:intergenic | 45.0% | |
| CCATCCAAGATACATGATGC+TGG | + | chr6_4:39347168-39347187 | Msa0987840:CDS | 45.0% | |
| CTCACCCCACTTCTCTCTAT+TGG | - | chr6_4:39342210-39342229 | None:intergenic | 50.0% | |
| ATAGAGAGAAGTGGGGTGAG+AGG | + | chr6_4:39342210-39342229 | Msa0987840:intron | 50.0% | |
| ATGCATGCAGGGGTTTAGGT+GGG | - | chr6_4:39342319-39342338 | None:intergenic | 50.0% | |
| ATTCTGCATGGGGGTTTGTG+AGG | + | chr6_4:39342551-39342570 | Msa0987840:intron | 50.0% | |
| TTCTGCATGGGGGTTTGTGA+GGG | + | chr6_4:39342552-39342571 | Msa0987840:intron | 50.0% | |
| ACCTTATCGCAAGAGAGTCG+AGG | + | chr6_4:39343027-39343046 | Msa0987840:intron | 50.0% | |
| ACCTCGACTCTCTTGCGATA+AGG | - | chr6_4:39343031-39343050 | None:intergenic | 50.0% | |
| GTCACCGCTATGCTGATGAT+AGG | + | chr6_4:39343399-39343418 | Msa0987840:CDS | 50.0% | |
| AGGGCCTATCATCAGCATAG+CGG | - | chr6_4:39343406-39343425 | None:intergenic | 50.0% | |
| AGTTGGCACGCTTCTGTAAG+AGG | + | chr6_4:39343480-39343499 | Msa0987840:CDS | 50.0% | |
| GCATTTACCACGTCAAAGGC+CGG | + | chr6_4:39343502-39343521 | Msa0987840:CDS | 50.0% | |
| TAGTGTCCCGGCATTTGATC+AGG | - | chr6_4:39343554-39343573 | None:intergenic | 50.0% | |
| CGGGACACTACAATCACAAG+AGG | + | chr6_4:39343564-39343583 | Msa0987840:CDS | 50.0% | |
| TTAGGCGTTTGATGCGGCAA+AGG | - | chr6_4:39343590-39343609 | None:intergenic | 50.0% | |
| TTGCCGCATCAAACGCCTAA+AGG | + | chr6_4:39343590-39343609 | Msa0987840:CDS | 50.0% | |
| !! | TAGGGTTTTGGCACTCGATG+TGG | - | chr6_4:39343722-39343741 | None:intergenic | 50.0% |
| AGCTCCTCGATTCAGCAACA+AGG | + | chr6_4:39344090-39344109 | Msa0987840:CDS | 50.0% | |
| ! | TGGGGATTATGCTGGTGCTA+AGG | + | chr6_4:39344144-39344163 | Msa0987840:CDS | 50.0% |
| ! | TATGCTGGTGCTAAGGATCG+GGG | + | chr6_4:39344151-39344170 | Msa0987840:CDS | 50.0% |
| TGCTAAGGATCGGGGTTTCA+AGG | + | chr6_4:39344159-39344178 | Msa0987840:CDS | 50.0% | |
| TAAGGATCGGGGTTTCAAGG+TGG | + | chr6_4:39344162-39344181 | Msa0987840:CDS | 50.0% | |
| AAGGATCGGGGTTTCAAGGT+GGG | + | chr6_4:39344163-39344182 | Msa0987840:CDS | 50.0% | |
| CGGAAACTTGGGGATAACAC+TGG | + | chr6_4:39344238-39344257 | Msa0987840:CDS | 50.0% | |
| TGGGGATAACACTGGTCCAA+AGG | + | chr6_4:39344246-39344265 | Msa0987840:CDS | 50.0% | |
| AACACTGGTCCAAAGGATCG+CGG | + | chr6_4:39344253-39344272 | Msa0987840:CDS | 50.0% | |
| CCCTTTAAACCGCGATCCTT+TGG | - | chr6_4:39344265-39344284 | None:intergenic | 50.0% | |
| GGCTCCCATAATATCACGCT+TGG | - | chr6_4:39344392-39344411 | None:intergenic | 50.0% | |
| CCCGAGACCAATGATAAGTC+AGG | + | chr6_4:39344472-39344491 | Msa0987840:CDS | 50.0% | |
| !! | CTTGACTTAGCATTGGCCAC+GGG | - | chr6_4:39344544-39344563 | None:intergenic | 50.0% |
| GGTGTGTGGCTTCACCTAAA+AGG | + | chr6_4:39344611-39344630 | Msa0987840:CDS | 50.0% | |
| ! | ACTGCTGCTTCCGATACTTG+AGG | - | chr6_4:39344943-39344962 | None:intergenic | 50.0% |
| !! | TCAAGTATCGGAAGCAGCAG+TGG | + | chr6_4:39344942-39344961 | Msa0987840:CDS | 50.0% |
| GGAGATTGATGCTCCTTCAG+AGG | + | chr6_4:39344963-39344982 | Msa0987840:CDS | 50.0% | |
| TCGCCACATGTAAGACAGAC+AGG | - | chr6_4:39345219-39345238 | None:intergenic | 50.0% | |
| GGTCAGTCCAAGAAAGGTTC+AGG | - | chr6_4:39345453-39345472 | None:intergenic | 50.0% | |
| GTCGACAGATTTAGACGACG+AGG | + | chr6_4:39346218-39346237 | Msa0987840:CDS | 50.0% | |
| ! | GGTGAAGTCGATTCCAGCAA+AGG | + | chr6_4:39346279-39346298 | Msa0987840:CDS | 50.0% |
| AGCAGTTGCACATCCTTTGC+TGG | - | chr6_4:39346295-39346314 | None:intergenic | 50.0% | |
| CTGTGTGGCCAGAAAGTTTC+CGG | + | chr6_4:39346616-39346635 | Msa0987840:CDS | 50.0% | |
| AGCTCTCATGGCAAGGTCAT+TGG | - | chr6_4:39346958-39346977 | None:intergenic | 50.0% | |
| ATGACCTTGCCATGAGAGCT+AGG | + | chr6_4:39346958-39346977 | Msa0987840:CDS | 50.0% | |
| TGACCTTGCCATGAGAGCTA+GGG | + | chr6_4:39346959-39346978 | Msa0987840:CDS | 50.0% | |
| ! | AGAAGTGGGGTGAGAGGTGT+GGG | + | chr6_4:39342216-39342235 | Msa0987840:intron | 55.0% |
| GATGCATGCAGGGGTTTAGG+TGG | - | chr6_4:39342320-39342339 | None:intergenic | 55.0% | |
| ACGGATGCATGCAGGGGTTT+AGG | - | chr6_4:39342323-39342342 | None:intergenic | 55.0% | |
| TAGCATTCCGGCCTTTGACG+TGG | - | chr6_4:39343512-39343531 | None:intergenic | 55.0% | |
| GCGCTTACCGCAACAAACAC+CGG | + | chr6_4:39343754-39343773 | Msa0987840:CDS | 55.0% | |
| TGCTCACCGCATCAAACGCT+GGG | + | chr6_4:39343794-39343813 | Msa0987840:CDS | 55.0% | |
| GTTGGTCCCAGCGTTTGATG+CGG | - | chr6_4:39343803-39343822 | None:intergenic | 55.0% | |
| CGTGATATTATGGGAGCCGC+AGG | + | chr6_4:39344394-39344413 | Msa0987840:CDS | 55.0% | |
| ! | CAACCCTAGCTCTCATGGCA+AGG | - | chr6_4:39346965-39346984 | None:intergenic | 55.0% |
| GAGAAGTGGGGTGAGAGGTG+TGG | + | chr6_4:39342215-39342234 | Msa0987840:intron | 60.0% | |
| ACAGGGACGGATGCATGCAG+GGG | - | chr6_4:39342329-39342348 | None:intergenic | 60.0% | |
| CACAGGGACGGATGCATGCA+GGG | - | chr6_4:39342330-39342349 | None:intergenic | 60.0% | |
| ACACAGGGACGGATGCATGC+AGG | - | chr6_4:39342331-39342350 | None:intergenic | 60.0% | |
| TGCATGCATCCGTCCCTGTG+TGG | + | chr6_4:39342330-39342349 | Msa0987840:intron | 60.0% | |
| GTGCTCACCGCATCAAACGC+TGG | + | chr6_4:39343793-39343812 | Msa0987840:CDS | 60.0% | |
| GGTGAAGCCACACACCCTGA+TGG | - | chr6_4:39344607-39344626 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 39342105 | 39347206 | 39342105 | ID=Msa0987840;Name=Msa0987840 |
| chr6_4 | mRNA | 39342105 | 39347206 | 39342105 | ID=Msa0987840-mRNA-1;Parent=Msa0987840;Name=Msa0987840-mRNA-1;_AED=0.49;_eAED=0.49;_QI=0|0|0|0.12|1|1|8|0|971 |
| chr6_4 | exon | 39342105 | 39342137 | 39342105 | ID=Msa0987840-mRNA-1:exon:9656;Parent=Msa0987840-mRNA-1 |
| chr6_4 | exon | 39342741 | 39342776 | 39342741 | ID=Msa0987840-mRNA-1:exon:9657;Parent=Msa0987840-mRNA-1 |
| chr6_4 | exon | 39343191 | 39345080 | 39343191 | ID=Msa0987840-mRNA-1:exon:9658;Parent=Msa0987840-mRNA-1 |
| chr6_4 | exon | 39345213 | 39345298 | 39345213 | ID=Msa0987840-mRNA-1:exon:9659;Parent=Msa0987840-mRNA-1 |
| chr6_4 | exon | 39345927 | 39346358 | 39345927 | ID=Msa0987840-mRNA-1:exon:9660;Parent=Msa0987840-mRNA-1 |
| chr6_4 | exon | 39346470 | 39346694 | 39346470 | ID=Msa0987840-mRNA-1:exon:9661;Parent=Msa0987840-mRNA-1 |
| chr6_4 | exon | 39346914 | 39347038 | 39346914 | ID=Msa0987840-mRNA-1:exon:9662;Parent=Msa0987840-mRNA-1 |
| chr6_4 | exon | 39347118 | 39347206 | 39347118 | ID=Msa0987840-mRNA-1:exon:9663;Parent=Msa0987840-mRNA-1 |
| chr6_4 | CDS | 39342105 | 39342137 | 39342105 | ID=Msa0987840-mRNA-1:cds;Parent=Msa0987840-mRNA-1 |
| chr6_4 | CDS | 39342741 | 39342776 | 39342741 | ID=Msa0987840-mRNA-1:cds;Parent=Msa0987840-mRNA-1 |
| chr6_4 | CDS | 39343191 | 39345080 | 39343191 | ID=Msa0987840-mRNA-1:cds;Parent=Msa0987840-mRNA-1 |
| chr6_4 | CDS | 39345213 | 39345298 | 39345213 | ID=Msa0987840-mRNA-1:cds;Parent=Msa0987840-mRNA-1 |
| chr6_4 | CDS | 39345927 | 39346358 | 39345927 | ID=Msa0987840-mRNA-1:cds;Parent=Msa0987840-mRNA-1 |
| chr6_4 | CDS | 39346470 | 39346694 | 39346470 | ID=Msa0987840-mRNA-1:cds;Parent=Msa0987840-mRNA-1 |
| chr6_4 | CDS | 39346914 | 39347038 | 39346914 | ID=Msa0987840-mRNA-1:cds;Parent=Msa0987840-mRNA-1 |
| chr6_4 | CDS | 39347118 | 39347206 | 39347118 | ID=Msa0987840-mRNA-1:cds;Parent=Msa0987840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
