Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713340 | XP_003611388.2 | 96.429 | 252 | 9 | 0 | 1 | 252 | 1 | 252 | 0.0 | 508 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713340 | sp|O23547|EXLB1_ARATH | 62.343 | 239 | 87 | 3 | 12 | 249 | 11 | 247 | 4.21e-111 | 322 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713340 | G7JYL2 | 96.429 | 252 | 9 | 0 | 1 | 252 | 1 | 252 | 0.0 | 508 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017320 | Msa0713340 | 0.803473 | 3.427775e-49 | -8.615850e-47 |
| Msa0051630 | Msa0713340 | 0.806419 | 8.303846e-50 | -8.615850e-47 |
| Msa0051740 | Msa0713340 | 0.813645 | 2.304594e-51 | -8.615850e-47 |
| Msa0051750 | Msa0713340 | 0.801504 | 8.727928e-49 | -8.615850e-47 |
| Msa0071250 | Msa0713340 | 0.809368 | 1.959186e-50 | -8.615850e-47 |
| Msa0103790 | Msa0713340 | 0.809905 | 1.501775e-50 | -8.615850e-47 |
| Msa0105520 | Msa0713340 | 0.808502 | 3.001827e-50 | -8.615850e-47 |
| Msa0106620 | Msa0713340 | 0.815443 | 9.219960e-52 | -8.615850e-47 |
| Msa0106710 | Msa0713340 | 0.813640 | 2.311226e-51 | -8.615850e-47 |
| Msa0640940 | Msa0713340 | 0.824189 | 9.234255e-54 | -8.615850e-47 |
| Msa0642970 | Msa0713340 | 0.813628 | 2.325287e-51 | -8.615850e-47 |
| Msa0643320 | Msa0713340 | 0.816941 | 4.264678e-52 | -8.615850e-47 |
| Msa0673270 | Msa0713340 | 0.802768 | 4.795238e-49 | -8.615850e-47 |
| Msa0679360 | Msa0713340 | 0.826443 | 2.704605e-54 | -8.615850e-47 |
| Msa0682680 | Msa0713340 | 0.805288 | 1.434836e-49 | -8.615850e-47 |
| Msa0705990 | Msa0713340 | 0.800112 | 1.678836e-48 | -8.615850e-47 |
| Msa0709160 | Msa0713340 | 0.825759 | 3.934361e-54 | -8.615850e-47 |
| Msa0713340 | Msa0750250 | 0.804769 | 1.842823e-49 | -8.615850e-47 |
| Msa0713340 | Msa0754930 | 0.997695 | 2.436444e-247 | -8.615850e-47 |
| Msa0713340 | Msa0799340 | 0.991929 | 2.481497e-190 | -8.615850e-47 |
| Msa0713340 | Msa0800370 | 0.811963 | 5.381775e-51 | -8.615850e-47 |
| Msa0713340 | Msa0811040 | 0.807542 | 4.803744e-50 | -8.615850e-47 |
| Msa0713340 | Msa0826150 | 0.807593 | 4.686229e-50 | -8.615850e-47 |
| Msa0713340 | Msa0833190 | -0.805353 | 1.391040e-49 | -8.615850e-47 |
| Msa0713340 | Msa0834330 | 0.987370 | 5.153798e-170 | -8.615850e-47 |
| Msa0713340 | Msa0870650 | 0.831734 | 1.410866e-55 | -8.615850e-47 |
| Msa0713340 | Msa0892640 | 0.802612 | 5.164985e-49 | -8.615850e-47 |
| Msa0713340 | Msa0903780 | 0.830022 | 3.710426e-55 | -8.615850e-47 |
| Msa0713340 | Msa0905750 | 0.837684 | 4.496059e-57 | -8.615850e-47 |
| Msa0713340 | Msa0934140 | 0.813215 | 2.864785e-51 | -8.615850e-47 |
| Msa0713340 | Msa0944200 | 0.805038 | 1.618654e-49 | -8.615850e-47 |
| Msa0713340 | Msa0947800 | 0.805222 | 1.481344e-49 | -8.615850e-47 |
| Msa0713340 | Msa0958030 | 0.818574 | 1.826161e-52 | -8.615850e-47 |
| Msa0713340 | Msa0974950 | 0.804323 | 2.283167e-49 | -8.615850e-47 |
| Msa0713340 | Msa0980540 | 0.805272 | 1.446216e-49 | -8.615850e-47 |
| Msa0713340 | Msa0992580 | 0.822405 | 2.411481e-53 | -8.615850e-47 |
| Msa0713340 | Msa1027250 | 0.806579 | 7.682870e-50 | -8.615850e-47 |
| Msa0713340 | Msa1027300 | 0.807556 | 4.772148e-50 | -8.615850e-47 |
| Msa0713340 | Msa1027360 | 0.811400 | 7.135546e-51 | -8.615850e-47 |
| Msa0713340 | Msa1063420 | 0.802491 | 5.469571e-49 | -8.615850e-47 |
| Msa0713340 | Msa1093100 | 0.841579 | 4.362028e-58 | -8.615850e-47 |
| Msa0713340 | Msa1131490 | 0.809028 | 2.316602e-50 | -8.615850e-47 |
| Msa0713340 | Msa1178580 | 0.819397 | 1.186645e-52 | -8.615850e-47 |
| Msa0713340 | Msa1188560 | 0.813805 | 2.125686e-51 | -8.615850e-47 |
| Msa0713340 | Msa1205480 | 0.830002 | 3.753217e-55 | -8.615850e-47 |
| Msa0713340 | Msa1205590 | 0.844858 | 5.828145e-59 | -8.615850e-47 |
| Msa0713340 | Msa1206650 | 0.837726 | 4.384869e-57 | -8.615850e-47 |
| Msa0713340 | Msa1209670 | 0.834196 | 3.446573e-56 | -8.615850e-47 |
| Msa0713340 | Msa1233850 | 0.837698 | 4.457299e-57 | -8.615850e-47 |
| Msa0713340 | Msa1242640 | 0.804828 | 1.790613e-49 | -8.615850e-47 |
| Msa0713340 | Msa1257070 | 0.810095 | 1.366406e-50 | -8.615850e-47 |
| Msa0713340 | Msa1264420 | 0.811000 | 8.713434e-51 | -8.615850e-47 |
| Msa0713340 | Msa1270660 | 0.803671 | 3.119358e-49 | -8.615850e-47 |
| Msa0713340 | Msa1276150 | 0.820088 | 8.249834e-53 | -8.615850e-47 |
| Msa0713340 | Msa1276970 | 0.821987 | 3.014194e-53 | -8.615850e-47 |
| Msa0713340 | Msa1293400 | 0.826672 | 2.385925e-54 | -8.615850e-47 |
| Msa0713340 | Msa1297530 | 0.817116 | 3.896572e-52 | -8.615850e-47 |
| Msa0713340 | Msa1307180 | 0.818267 | 2.142460e-52 | -8.615850e-47 |
| Msa0713340 | Msa1315750 | 0.801282 | 9.690190e-49 | -8.615850e-47 |
| Msa0713340 | Msa1316360 | 0.810938 | 8.985888e-51 | -8.615850e-47 |
| Msa0713340 | Msa1320820 | 0.824603 | 7.379877e-54 | -8.615850e-47 |
| Msa0713340 | Msa1323690 | 0.805971 | 1.031815e-49 | -8.615850e-47 |
| Msa0713340 | Msa1336560 | 0.813905 | 2.020347e-51 | -8.615850e-47 |
| Msa0713340 | Msa1337170 | 0.824887 | 6.327750e-54 | -8.615850e-47 |
| Msa0713340 | Msa1351540 | 0.805671 | 1.192773e-49 | -8.615850e-47 |
| Msa0713340 | Msa1356610 | 0.811277 | 7.587395e-51 | -8.615850e-47 |
| Msa0713340 | Msa1370590 | 0.824975 | 6.031232e-54 | -8.615850e-47 |
| Msa0713340 | Msa1384100 | 0.824066 | 9.871775e-54 | -8.615850e-47 |
| Msa0713340 | Msa1391480 | 0.800478 | 1.414176e-48 | -8.615850e-47 |
| Msa0713340 | Msa1395730 | 0.802438 | 5.611058e-49 | -8.615850e-47 |
| Msa0713340 | Msa1410420 | 0.809111 | 2.223771e-50 | -8.615850e-47 |
| Msa0713340 | Msa1416260 | 0.809588 | 1.756874e-50 | -8.615850e-47 |
| Msa0713340 | Msa1432480 | 0.811886 | 5.595053e-51 | -8.615850e-47 |
| Msa0713340 | Msa1442790 | 0.809548 | 1.792259e-50 | -8.615850e-47 |
| Msa0713340 | Msa1444120 | 0.824625 | 7.294645e-54 | -8.615850e-47 |
| Msa0713340 | Msa1451150 | 0.820942 | 5.254136e-53 | -8.615850e-47 |
| Msa0713340 | Msa1454530 | 0.802470 | 5.525404e-49 | -8.615850e-47 |
| Msa0713340 | Msa1454960 | 0.811157 | 8.055776e-51 | -8.615850e-47 |
| Msa0713340 | Msa1459960 | 0.806333 | 8.656198e-50 | -8.615850e-47 |
| Msa0123510 | Msa0713340 | 0.807439 | 5.053329e-50 | -8.615850e-47 |
| Msa0126790 | Msa0713340 | 0.808779 | 2.618736e-50 | -8.615850e-47 |
| Msa0126880 | Msa0713340 | 0.800548 | 1.368522e-48 | -8.615850e-47 |
| Msa0136120 | Msa0713340 | 0.800834 | 1.196827e-48 | -8.615850e-47 |
| Msa0142410 | Msa0713340 | 0.804971 | 1.671549e-49 | -8.615850e-47 |
| Msa0142500 | Msa0713340 | 0.804257 | 2.356524e-49 | -8.615850e-47 |
| Msa0146080 | Msa0713340 | 0.821931 | 3.104645e-53 | -8.615850e-47 |
| Msa0147980 | Msa0713340 | 0.807750 | 4.338808e-50 | -8.615850e-47 |
| Msa0171870 | Msa0713340 | 0.803563 | 3.283378e-49 | -8.615850e-47 |
| Msa0171980 | Msa0713340 | 0.818493 | 1.904684e-52 | -8.615850e-47 |
| Msa0190120 | Msa0713340 | 0.839889 | 1.209588e-57 | -8.615850e-47 |
| Msa0192640 | Msa0713340 | 0.800502 | 1.398830e-48 | -8.615850e-47 |
| Msa0205010 | Msa0713340 | 0.800895 | 1.162583e-48 | -8.615850e-47 |
| Msa0207030 | Msa0713340 | 0.817123 | 3.881356e-52 | -8.615850e-47 |
| Msa0238030 | Msa0713340 | 0.800585 | 1.344939e-48 | -8.615850e-47 |
| Msa0382370 | Msa0713340 | 0.803176 | 3.949875e-49 | -8.615850e-47 |
| Msa0390480 | Msa0713340 | 0.816214 | 6.205281e-52 | -8.615850e-47 |
| Msa0395980 | Msa0713340 | 0.806513 | 7.931377e-50 | -8.615850e-47 |
| Msa0403770 | Msa0713340 | 0.828018 | 1.135115e-54 | -8.615850e-47 |
| Msa0427580 | Msa0713340 | 0.806921 | 6.505109e-50 | -8.615850e-47 |
| Msa0443430 | Msa0713340 | 0.812550 | 4.007878e-51 | -8.615850e-47 |
| Msa0450400 | Msa0713340 | -0.803161 | 3.977238e-49 | -8.615850e-47 |
| Msa0482040 | Msa0713340 | 0.808172 | 3.529375e-50 | -8.615850e-47 |
| Msa0244970 | Msa0713340 | 0.836395 | 9.593654e-57 | -8.615850e-47 |
| Msa0244980 | Msa0713340 | 0.841915 | 3.555556e-58 | -8.615850e-47 |
| Msa0249580 | Msa0713340 | 0.800618 | 1.324560e-48 | -8.615850e-47 |
| Msa0271890 | Msa0713340 | 0.803316 | 3.695143e-49 | -8.615850e-47 |
| Msa0283420 | Msa0713340 | 0.842722 | 2.173120e-58 | -8.615850e-47 |
| Msa0285330 | Msa0713340 | 0.811166 | 8.021949e-51 | -8.615850e-47 |
| Msa0296790 | Msa0713340 | 0.811445 | 6.975519e-51 | -8.615850e-47 |
| Msa0304840 | Msa0713340 | 0.800642 | 1.309909e-48 | -8.615850e-47 |
| Msa0307960 | Msa0713340 | 0.807667 | 4.518920e-50 | -8.615850e-47 |
| Msa0321690 | Msa0713340 | 0.839362 | 1.658081e-57 | -8.615850e-47 |
| Msa0322900 | Msa0713340 | 0.826521 | 2.591994e-54 | -8.615850e-47 |
| Msa0363060 | Msa0713340 | 0.803643 | 3.160269e-49 | -8.615850e-47 |
| Msa0363640 | Msa0713340 | 0.803872 | 2.832980e-49 | -8.615850e-47 |
| Msa0482940 | Msa0713340 | 0.823881 | 1.090675e-53 | -8.615850e-47 |
| Msa0489660 | Msa0713340 | 0.810326 | 1.218612e-50 | -8.615850e-47 |
| Msa0491000 | Msa0713340 | 0.814673 | 1.366952e-51 | -8.615850e-47 |
| Msa0511770 | Msa0713340 | 0.802881 | 4.545617e-49 | -8.615850e-47 |
| Msa0518170 | Msa0713340 | 0.821204 | 4.570774e-53 | -8.615850e-47 |
| Msa0542290 | Msa0713340 | 0.811488 | 6.828800e-51 | -8.615850e-47 |
| Msa0547160 | Msa0713340 | 0.822238 | 2.636574e-53 | -8.615850e-47 |
| Msa0547990 | Msa0713340 | 0.807897 | 4.039228e-50 | -8.615850e-47 |
| Msa0562690 | Msa0713340 | 0.801512 | 8.694259e-49 | -8.615850e-47 |
| Msa0566350 | Msa0713340 | 0.805140 | 1.541460e-49 | -8.615850e-47 |
| Msa0566750 | Msa0713340 | 0.806250 | 9.012837e-50 | -8.615850e-47 |
| Msa0600450 | Msa0713340 | 0.817992 | 2.472751e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713340 | MtrunA17_Chr5g0399811 | 96.429 | 252 | 9 | 0 | 1 | 252 | 1 | 252 | 0.0 | 508 |
| Msa0713340 | MtrunA17_Chr4g0055561 | 74.502 | 251 | 64 | 0 | 2 | 252 | 1 | 251 | 8.86e-148 | 412 |
| Msa0713340 | MtrunA17_Chr4g0055601 | 61.200 | 250 | 96 | 1 | 2 | 250 | 1 | 250 | 2.15e-118 | 338 |
| Msa0713340 | MtrunA17_Chr4g0055061 | 40.239 | 251 | 142 | 2 | 10 | 252 | 3 | 253 | 2.18e-62 | 196 |
| Msa0713340 | MtrunA17_Chr4g0038741 | 40.724 | 221 | 127 | 3 | 32 | 251 | 26 | 243 | 5.30e-57 | 182 |
| Msa0713340 | MtrunA17_Chr7g0231211 | 32.046 | 259 | 155 | 7 | 10 | 251 | 16 | 270 | 2.90e-32 | 119 |
| Msa0713340 | MtrunA17_Chr4g0012801 | 30.736 | 231 | 150 | 7 | 26 | 251 | 39 | 264 | 1.40e-28 | 109 |
| Msa0713340 | MtrunA17_Chr4g0055581 | 54.255 | 94 | 42 | 1 | 95 | 187 | 13 | 106 | 1.70e-28 | 104 |
| Msa0713340 | MtrunA17_Chr2g0324201 | 30.837 | 227 | 142 | 7 | 34 | 252 | 38 | 257 | 1.88e-28 | 108 |
| Msa0713340 | MtrunA17_Chr7g0231221 | 33.921 | 227 | 137 | 8 | 34 | 251 | 53 | 275 | 3.81e-28 | 108 |
| Msa0713340 | MtrunA17_Chr2g0324221 | 30.088 | 226 | 143 | 7 | 34 | 251 | 40 | 258 | 1.89e-27 | 106 |
| Msa0713340 | MtrunA17_Chr4g0021641 | 30.531 | 226 | 142 | 7 | 34 | 251 | 46 | 264 | 4.60e-26 | 102 |
| Msa0713340 | MtrunA17_Chr1g0193631 | 28.326 | 233 | 146 | 9 | 32 | 251 | 33 | 257 | 2.51e-21 | 89.7 |
| Msa0713340 | MtrunA17_Chr4g0057091 | 25.769 | 260 | 166 | 9 | 12 | 252 | 11 | 262 | 3.64e-21 | 89.4 |
| Msa0713340 | MtrunA17_Chr7g0271001 | 26.437 | 261 | 160 | 12 | 12 | 251 | 5 | 254 | 3.70e-21 | 89.4 |
| Msa0713340 | MtrunA17_Chr3g0092071 | 28.099 | 242 | 158 | 9 | 18 | 251 | 14 | 247 | 6.85e-21 | 88.6 |
| Msa0713340 | MtrunA17_Chr7g0218751 | 27.755 | 245 | 162 | 10 | 15 | 251 | 14 | 251 | 1.23e-20 | 87.8 |
| Msa0713340 | MtrunA17_Chr7g0218741 | 27.236 | 246 | 164 | 8 | 15 | 251 | 14 | 253 | 6.77e-20 | 85.9 |
| Msa0713340 | MtrunA17_Chr8g0360041 | 27.778 | 252 | 166 | 10 | 9 | 251 | 10 | 254 | 1.14e-19 | 85.1 |
| Msa0713340 | MtrunA17_Chr3g0128791 | 27.928 | 222 | 145 | 8 | 32 | 245 | 34 | 248 | 1.34e-19 | 85.1 |
| Msa0713340 | MtrunA17_Chr3g0128801 | 25.781 | 256 | 175 | 8 | 1 | 248 | 3 | 251 | 1.47e-19 | 85.1 |
| Msa0713340 | MtrunA17_Chr5g0398271 | 25.847 | 236 | 148 | 6 | 32 | 252 | 40 | 263 | 2.30e-19 | 84.7 |
| Msa0713340 | MtrunA17_Chr7g0217661 | 28.696 | 230 | 150 | 10 | 26 | 252 | 23 | 241 | 1.99e-18 | 81.6 |
| Msa0713340 | MtrunA17_Chr5g0432611 | 27.928 | 222 | 145 | 8 | 33 | 246 | 33 | 247 | 7.72e-18 | 80.1 |
| Msa0713340 | MtrunA17_Chr3g0107291 | 24.900 | 249 | 163 | 9 | 15 | 246 | 15 | 256 | 1.27e-17 | 79.7 |
| Msa0713340 | MtrunA17_Chr3g0107311 | 24.603 | 252 | 166 | 9 | 12 | 246 | 6 | 250 | 1.91e-17 | 79.3 |
| Msa0713340 | MtrunA17_Chr4g0042521 | 26.446 | 242 | 163 | 8 | 12 | 245 | 8 | 242 | 6.97e-17 | 77.4 |
| Msa0713340 | MtrunA17_Chr5g0417701 | 26.860 | 242 | 159 | 9 | 15 | 245 | 8 | 242 | 1.19e-16 | 77.0 |
| Msa0713340 | MtrunA17_Chr8g0360721 | 26.457 | 223 | 133 | 10 | 45 | 251 | 14 | 221 | 2.22e-16 | 75.5 |
| Msa0713340 | MtrunA17_Chr7g0218761 | 28.972 | 214 | 135 | 10 | 47 | 251 | 7 | 212 | 2.55e-16 | 75.5 |
| Msa0713340 | MtrunA17_Chr4g0021561 | 27.309 | 249 | 162 | 10 | 12 | 248 | 13 | 254 | 5.64e-14 | 69.7 |
| Msa0713340 | MtrunA17_Chr1g0157061 | 23.276 | 232 | 159 | 10 | 31 | 251 | 18 | 241 | 3.78e-12 | 64.3 |
| Msa0713340 | MtrunA17_Chr5g0433841 | 26.809 | 235 | 145 | 11 | 32 | 252 | 44 | 265 | 5.50e-12 | 63.9 |
| Msa0713340 | MtrunA17_Chr6g0453341 | 27.803 | 223 | 148 | 9 | 29 | 248 | 38 | 250 | 5.93e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0713340 | AT4G17030.1 | 62.343 | 239 | 87 | 3 | 12 | 249 | 11 | 247 | 4.28e-112 | 322 |
| Msa0713340 | AT3G45970.2 | 39.130 | 207 | 123 | 3 | 48 | 251 | 15 | 221 | 1.73e-49 | 163 |
| Msa0713340 | AT4G38400.1 | 40.957 | 188 | 110 | 1 | 65 | 251 | 61 | 248 | 3.13e-47 | 158 |
| Msa0713340 | AT3G45970.1 | 38.424 | 203 | 122 | 3 | 52 | 251 | 46 | 248 | 1.04e-46 | 156 |
| Msa0713340 | AT3G45960.1 | 37.766 | 188 | 116 | 1 | 65 | 251 | 12 | 199 | 5.31e-46 | 153 |
| Msa0713340 | AT3G45960.2 | 36.634 | 202 | 126 | 2 | 52 | 251 | 46 | 247 | 7.96e-46 | 154 |
| Msa0713340 | AT1G65680.1 | 32.083 | 240 | 143 | 8 | 24 | 251 | 42 | 273 | 1.85e-32 | 120 |
| Msa0713340 | AT4G28250.1 | 30.153 | 262 | 164 | 9 | 6 | 252 | 4 | 261 | 1.93e-28 | 109 |
| Msa0713340 | AT2G20750.1 | 29.389 | 262 | 159 | 9 | 13 | 252 | 11 | 268 | 2.57e-26 | 103 |
| Msa0713340 | AT4G28250.2 | 29.008 | 262 | 161 | 10 | 6 | 252 | 4 | 255 | 1.64e-23 | 95.9 |
| Msa0713340 | AT2G40610.1 | 29.528 | 254 | 164 | 9 | 1 | 245 | 1 | 248 | 4.12e-23 | 94.7 |
| Msa0713340 | AT5G05290.1 | 29.279 | 222 | 143 | 7 | 33 | 246 | 36 | 251 | 1.08e-22 | 94.0 |
| Msa0713340 | AT3G60570.1 | 28.800 | 250 | 153 | 10 | 15 | 251 | 20 | 257 | 1.72e-21 | 90.9 |
| Msa0713340 | AT5G39290.1 | 29.915 | 234 | 135 | 11 | 32 | 251 | 61 | 279 | 3.86e-21 | 90.1 |
| Msa0713340 | AT5G39310.1 | 29.515 | 227 | 144 | 9 | 33 | 251 | 94 | 312 | 1.30e-20 | 89.4 |
| Msa0713340 | AT5G39270.1 | 29.915 | 234 | 135 | 11 | 32 | 251 | 61 | 279 | 4.90e-20 | 87.0 |
| Msa0713340 | AT2G45110.1 | 30.702 | 228 | 140 | 8 | 35 | 251 | 39 | 259 | 1.55e-19 | 85.5 |
| Msa0713340 | AT4G01630.1 | 23.282 | 262 | 182 | 8 | 2 | 251 | 1 | 255 | 1.73e-19 | 85.1 |
| Msa0713340 | AT3G60570.2 | 30.415 | 217 | 126 | 10 | 48 | 251 | 5 | 209 | 4.98e-19 | 83.2 |
| Msa0713340 | AT2G20750.2 | 31.122 | 196 | 112 | 7 | 13 | 187 | 11 | 204 | 1.43e-18 | 82.0 |
| Msa0713340 | AT5G56320.1 | 26.613 | 248 | 163 | 9 | 13 | 248 | 9 | 249 | 2.06e-18 | 82.4 |
| Msa0713340 | AT5G56320.2 | 26.613 | 248 | 163 | 9 | 13 | 248 | 9 | 249 | 2.06e-18 | 82.4 |
| Msa0713340 | AT5G39280.1 | 29.204 | 226 | 147 | 9 | 32 | 251 | 57 | 275 | 4.24e-18 | 81.6 |
| Msa0713340 | AT5G56320.3 | 26.613 | 248 | 163 | 9 | 13 | 248 | 9 | 249 | 5.41e-18 | 82.0 |
| Msa0713340 | AT5G39300.1 | 29.204 | 226 | 147 | 9 | 32 | 251 | 58 | 276 | 7.95e-18 | 80.9 |
| Msa0713340 | AT2G03090.1 | 25.911 | 247 | 168 | 8 | 10 | 248 | 11 | 250 | 1.13e-17 | 80.1 |
| Msa0713340 | AT1G65681.1 | 27.014 | 211 | 142 | 6 | 48 | 251 | 17 | 222 | 1.15e-17 | 79.7 |
| Msa0713340 | AT4G28250.4 | 30.457 | 197 | 115 | 7 | 6 | 188 | 4 | 192 | 1.36e-16 | 76.3 |
| Msa0713340 | AT3G15370.1 | 28.077 | 260 | 144 | 12 | 12 | 248 | 8 | 247 | 2.55e-16 | 76.6 |
| Msa0713340 | AT4G28250.3 | 30.612 | 196 | 114 | 7 | 6 | 187 | 4 | 191 | 3.16e-16 | 75.5 |
| Msa0713340 | AT5G02260.1 | 26.522 | 230 | 152 | 9 | 29 | 248 | 32 | 254 | 1.02e-15 | 74.7 |
| Msa0713340 | AT1G12560.1 | 23.246 | 228 | 161 | 6 | 32 | 251 | 40 | 261 | 6.04e-15 | 72.8 |
| Msa0713340 | AT2G39700.1 | 24.554 | 224 | 152 | 8 | 32 | 245 | 34 | 250 | 8.37e-15 | 72.4 |
| Msa0713340 | AT3G29030.1 | 27.807 | 187 | 127 | 6 | 29 | 213 | 38 | 218 | 1.16e-13 | 68.9 |
| Msa0713340 | AT2G37640.1 | 25.551 | 227 | 152 | 8 | 32 | 248 | 39 | 258 | 1.45e-13 | 68.9 |
| Msa0713340 | AT1G20190.1 | 24.569 | 232 | 153 | 10 | 33 | 251 | 30 | 252 | 5.40e-12 | 64.3 |
| Msa0713340 | AT4G38210.1 | 27.451 | 255 | 154 | 13 | 13 | 248 | 10 | 252 | 4.28e-11 | 62.0 |
| Msa0713340 | AT3G15370.2 | 26.364 | 220 | 125 | 10 | 48 | 248 | 76 | 277 | 7.61e-11 | 61.2 |
Find 72 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAATTTGGTGCTTAAAATT+AGG | 0.152890 | 5_1:-5497661 | None:intergenic |
| TCCCCGTGGCTATTCAAATT+TGG | 0.158342 | 5_1:+5498555 | Msa0713340:CDS |
| TGGCTATAATATCTTGTTTA+AGG | 0.174105 | 5_1:+5498660 | Msa0713340:CDS |
| AGAAATGCAAAGAATTATTT+AGG | 0.235172 | 5_1:-5497594 | None:intergenic |
| TGCTCTAGAGCAACCTATTA+TGG | 0.246885 | 5_1:+5497742 | Msa0713340:CDS |
| CTTGGATTTGCATAACAATC+TGG | 0.272291 | 5_1:-5497769 | None:intergenic |
| ACAATCTGGGCTACCATAAT+AGG | 0.288543 | 5_1:-5497755 | None:intergenic |
| GCTTGTGGCTATGGTGATTA+TGG | 0.309081 | 5_1:+5498177 | Msa0713340:CDS |
| TACGCATTGGCCTCCATTCT+TGG | 0.310288 | 5_1:-5498870 | None:intergenic |
| ATCTCTAGTGATTGGGAAGC+TGG | 0.319429 | 5_1:+5499003 | Msa0713340:CDS |
| TGACACAAACAAAACCAATT+TGG | 0.321541 | 5_1:-5497675 | None:intergenic |
| GTGGTAGTGCTGGGCTGTAT+TGG | 0.321854 | 5_1:+5498962 | Msa0713340:CDS |
| CCATTCTCGTCACACAATTC+TGG | 0.326522 | 5_1:-5498475 | None:intergenic |
| AAAGTACTTATAGATAGATT+TGG | 0.328977 | 5_1:+5499066 | Msa0713340:three_prime_UTR |
| TGGTAGTGCTGGGCTGTATT+GGG | 0.329472 | 5_1:+5498963 | Msa0713340:CDS |
| CCCCGTGGCTATTCAAATTT+GGG | 0.333249 | 5_1:+5498556 | Msa0713340:CDS |
| AGGCCAATGCGTAGGGCATT+TGG | 0.356145 | 5_1:+5498880 | Msa0713340:CDS |
| CCGATTTCGGTGTGGGAGAT+AGG | 0.376563 | 5_1:+5498515 | Msa0713340:CDS |
| CCTATCTCCCACACCGAAAT+CGG | 0.384864 | 5_1:-5498515 | None:intergenic |
| AGACTGTTATCTCTAGTGAT+TGG | 0.400920 | 5_1:+5498995 | Msa0713340:CDS |
| GCCATTCTTATTCTCTATGT+TGG | 0.402224 | 5_1:+5498715 | Msa0713340:CDS |
| CTCCAAGTGAGTGGTAGTGC+TGG | 0.409157 | 5_1:+5498952 | Msa0713340:CDS |
| TTAGAGGGAGCTTGTGGCTA+TGG | 0.433052 | 5_1:+5498168 | Msa0713340:intron |
| GACTGTTATCTCTAGTGATT+GGG | 0.436426 | 5_1:+5498996 | Msa0713340:CDS |
| CAATTTGTCATTGAACATGA+TGG | 0.445795 | 5_1:+5497636 | Msa0713340:exon |
| AACTTGATCTCACCTCTTGG+AGG | 0.448456 | 5_1:-5498925 | None:intergenic |
| AACAGGAAGATTGCCAAGAA+TGG | 0.466268 | 5_1:+5498857 | Msa0713340:intron |
| ATTCTTATTCTCTATGTTGG+TGG | 0.472042 | 5_1:+5498718 | Msa0713340:CDS |
| TCTCTAGTGATTGGGAAGCT+GGG | 0.472781 | 5_1:+5499004 | Msa0713340:CDS |
| TATGTGGTGGTGACCGATTT+CGG | 0.479504 | 5_1:+5498502 | Msa0713340:CDS |
| TCGCAGGCGTTTCTTCGCTA+TGG | 0.490569 | 5_1:+5498223 | Msa0713340:CDS |
| TCGCTATGGAAGAATGGATC+TGG | 0.490619 | 5_1:+5498237 | Msa0713340:CDS |
| CTCAACTTGATCTCACCTCT+TGG | 0.495730 | 5_1:-5498928 | None:intergenic |
| TTGGATTTGCATAACAATCT+GGG | 0.496289 | 5_1:-5497768 | None:intergenic |
| CCAGAATTGTGTGACGAGAA+TGG | 0.501363 | 5_1:+5498475 | Msa0713340:CDS |
| ATCACTAGAGATAACAGTCT+TGG | 0.514327 | 5_1:-5498992 | None:intergenic |
| CTCTAGTGATTGGGAAGCTG+GGG | 0.520412 | 5_1:+5499005 | Msa0713340:CDS |
| TTATAGCCATTGTATTTGCA+AGG | 0.532628 | 5_1:-5498646 | None:intergenic |
| GCCCAGCACTACCACTCACT+TGG | 0.534848 | 5_1:-5498954 | None:intergenic |
| ACTTGATCTCACCTCTTGGA+GGG | 0.535508 | 5_1:-5498924 | None:intergenic |
| ACCAACATAGAGAATAAGAA+TGG | 0.537864 | 5_1:-5498716 | None:intergenic |
| GCCCAAATTTGAATAGCCAC+GGG | 0.544992 | 5_1:-5498557 | None:intergenic |
| TGCCCAAATTTGAATAGCCA+CGG | 0.546821 | 5_1:-5498558 | None:intergenic |
| GTTCCAAATGCCCTACGCAT+TGG | 0.550110 | 5_1:-5498883 | None:intergenic |
| GTAAATGATGGCAATGTCGC+AGG | 0.552094 | 5_1:+5498207 | Msa0713340:CDS |
| TCCAAGTGAGTGGTAGTGCT+GGG | 0.552324 | 5_1:+5498953 | Msa0713340:CDS |
| GTTTCTTCGCTATGGAAGAA+TGG | 0.552967 | 5_1:+5498231 | Msa0713340:CDS |
| AAGAATGGAGGCCAATGCGT+AGG | 0.554025 | 5_1:+5498872 | Msa0713340:CDS |
| TGGAAGAATGGATCTGGTTG+TGG | 0.555017 | 5_1:+5498243 | Msa0713340:CDS |
| TCTTGAGAGGAACACAAGAC+AGG | 0.557963 | 5_1:-5497709 | None:intergenic |
| AAATTGTCAAAGCACAAAAG+AGG | 0.559026 | 5_1:-5497619 | None:intergenic |
| TATAGCCATTGTATTTGCAA+GGG | 0.561411 | 5_1:-5498645 | None:intergenic |
| GTGGTGACCGATTTCGGTGT+GGG | 0.566642 | 5_1:+5498508 | Msa0713340:CDS |
| AACTGCTGTTCAGTTGTGGC+AGG | 0.569473 | 5_1:+5498753 | Msa0713340:CDS |
| ATAAGAATGGCTAAGTAGTG+AGG | 0.575706 | 5_1:-5498703 | None:intergenic |
| AGAATGGAGGCCAATGCGTA+GGG | 0.588746 | 5_1:+5498873 | Msa0713340:CDS |
| TATGGACAGACAGTAAATGA+TGG | 0.603311 | 5_1:+5498195 | Msa0713340:CDS |
| CAGAAGCCAAACACAAGTAG+AGG | 0.606030 | 5_1:-5499171 | None:intergenic |
| TAGTGCTGGGCTGTATTGGG+TGG | 0.610771 | 5_1:+5498966 | Msa0713340:CDS |
| AGGAAGATTGCCAAGAATGG+AGG | 0.614849 | 5_1:+5498860 | Msa0713340:intron |
| TGACGAGAATGGAGCATATG+TGG | 0.619740 | 5_1:+5498486 | Msa0713340:CDS |
| AGAATCCCTTGCAAATACAA+TGG | 0.620915 | 5_1:+5498640 | Msa0713340:CDS |
| GCAAACAAAAGAGTCTTGAG+AGG | 0.624968 | 5_1:-5497722 | None:intergenic |
| TTTATAGAATGACACAGACC+AGG | 0.643770 | 5_1:-5499115 | None:intergenic |
| ATGTAACTGCTGTTCAGTTG+TGG | 0.651186 | 5_1:+5498749 | Msa0713340:CDS |
| GGTGGTGACCGATTTCGGTG+TGG | 0.653687 | 5_1:+5498507 | Msa0713340:CDS |
| AAGTTGAGGCTCCAAGTGAG+TGG | 0.655665 | 5_1:+5498943 | Msa0713340:CDS |
| GACTTCATCATGAGTCCCCG+TGG | 0.688519 | 5_1:+5498541 | Msa0713340:CDS |
| GATGCAGAGAACCCTCCAAG+AGG | 0.690257 | 5_1:+5498913 | Msa0713340:CDS |
| CCCAAATTTGAATAGCCACG+GGG | 0.693150 | 5_1:-5498556 | None:intergenic |
| CAAGAGGTGAGATCAAGTTG+AGG | 0.697595 | 5_1:+5498929 | Msa0713340:CDS |
| CGAGAATGGAGCATATGTGG+TGG | 0.757236 | 5_1:+5498489 | Msa0713340:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAAGTAATATATATTATAA+AGG | + | chr5_1:5498371-5498390 | Msa0713340:intron | 10.0% |
| !! | ATAATAAATAATGATGAAAT+AGG | + | chr5_1:5498438-5498457 | Msa0713340:intron | 10.0% |
| !! | TGAAGTAATATATATTATAA+AGG | + | chr5_1:5498371-5498390 | Msa0713340:intron | 10.0% |
| !! | ATAATAAATAATGATGAAAT+AGG | + | chr5_1:5498438-5498457 | Msa0713340:intron | 10.0% |
| !!! | ATTCAATTTTTATCTCAAAT+TGG | + | chr5_1:5497945-5497964 | Msa0713340:intron | 15.0% |
| !! | TATTAACAATCTCAAAATAA+AGG | - | chr5_1:5498783-5498802 | None:intergenic | 15.0% |
| !! | TAAAAATAACTATGAATAAG+AGG | - | chr5_1:5497556-5497575 | None:intergenic | 15.0% |
| !!! | ATTCAATTTTTATCTCAAAT+TGG | + | chr5_1:5497945-5497964 | Msa0713340:intron | 15.0% |
| !! | TATTAACAATCTCAAAATAA+AGG | - | chr5_1:5498783-5498802 | None:intergenic | 15.0% |
| !! | AGAAATGCAAAGAATTATTT+AGG | - | chr5_1:5497597-5497616 | None:intergenic | 20.0% |
| !! | CACATTTATAAAAATTGACA+GGG | - | chr5_1:5497984-5498003 | None:intergenic | 20.0% |
| !! | ACACATTTATAAAAATTGAC+AGG | - | chr5_1:5497985-5498004 | None:intergenic | 20.0% |
| !!! | AGTATACAACATTTTTTTTC+CGG | + | chr5_1:5498076-5498095 | Msa0713340:intron | 20.0% |
| !! | TACATTTCTTGAAATTGAAT+TGG | + | chr5_1:5498813-5498832 | Msa0713340:intron | 20.0% |
| !! | ACATTTCTTGAAATTGAATT+GGG | + | chr5_1:5498814-5498833 | Msa0713340:intron | 20.0% |
| !!! | AAAGTACTTATAGATAGATT+TGG | + | chr5_1:5499066-5499085 | Msa0713340:three_prime_UTR | 20.0% |
| !! | AGAAATGCAAAGAATTATTT+AGG | - | chr5_1:5497597-5497616 | None:intergenic | 20.0% |
| !! | CACATTTATAAAAATTGACA+GGG | - | chr5_1:5497984-5498003 | None:intergenic | 20.0% |
| !! | ACACATTTATAAAAATTGAC+AGG | - | chr5_1:5497985-5498004 | None:intergenic | 20.0% |
| !!! | AGTATACAACATTTTTTTTC+CGG | + | chr5_1:5498076-5498095 | Msa0713340:intron | 20.0% |
| !! | TACATTTCTTGAAATTGAAT+TGG | + | chr5_1:5498813-5498832 | Msa0713340:intron | 20.0% |
| !! | ACATTTCTTGAAATTGAATT+GGG | + | chr5_1:5498814-5498833 | Msa0713340:intron | 20.0% |
| !!! | AAAGTACTTATAGATAGATT+TGG | + | chr5_1:5499066-5499085 | Msa0713340:three_prime_UTR | 20.0% |
| !! | CATTGAATCGGTTTATAAAT+CGG | - | chr5_1:5498052-5498071 | None:intergenic | 25.0% |
| ! | CATAAAATACATAATCTGAG+TGG | + | chr5_1:5498132-5498151 | Msa0713340:intron | 25.0% |
| !! | AACTAATTGTTAGTTGATGT+TGG | - | chr5_1:5498407-5498426 | None:intergenic | 25.0% |
| ! | AAATAATGATGAAATAGGTG+AGG | + | chr5_1:5498443-5498462 | Msa0713340:intron | 25.0% |
| ! | TATTCAAATTTGGGCAAAAA+TGG | + | chr5_1:5498565-5498584 | Msa0713340:CDS | 25.0% |
| !! | TCTGCAGAACTTTTTAAATA+TGG | + | chr5_1:5498595-5498614 | Msa0713340:CDS | 25.0% |
| !! | AGAACTTTTTAAATATGGTG+TGG | + | chr5_1:5498600-5498619 | Msa0713340:CDS | 25.0% |
| !! | TGGCTATAATATCTTGTTTA+AGG | + | chr5_1:5498660-5498679 | Msa0713340:CDS | 25.0% |
| !! | CATTGAATCGGTTTATAAAT+CGG | - | chr5_1:5498052-5498071 | None:intergenic | 25.0% |
| ! | CATAAAATACATAATCTGAG+TGG | + | chr5_1:5498132-5498151 | Msa0713340:intron | 25.0% |
| !! | AACTAATTGTTAGTTGATGT+TGG | - | chr5_1:5498407-5498426 | None:intergenic | 25.0% |
| ! | AAATAATGATGAAATAGGTG+AGG | + | chr5_1:5498443-5498462 | Msa0713340:intron | 25.0% |
| ! | TATTCAAATTTGGGCAAAAA+TGG | + | chr5_1:5498565-5498584 | Msa0713340:CDS | 25.0% |
| !! | TCTGCAGAACTTTTTAAATA+TGG | + | chr5_1:5498595-5498614 | Msa0713340:CDS | 25.0% |
| !! | AGAACTTTTTAAATATGGTG+TGG | + | chr5_1:5498600-5498619 | Msa0713340:CDS | 25.0% |
| !! | TGGCTATAATATCTTGTTTA+AGG | + | chr5_1:5498660-5498679 | Msa0713340:CDS | 25.0% |
| AAATTGTCAAAGCACAAAAG+AGG | - | chr5_1:5497622-5497641 | None:intergenic | 30.0% | |
| CAATTTGTCATTGAACATGA+TGG | + | chr5_1:5497636-5497655 | Msa0713340:exon | 30.0% | |
| !! | CCAATTTGGTGCTTAAAATT+AGG | - | chr5_1:5497664-5497683 | None:intergenic | 30.0% |
| ! | CCTAATTTTAAGCACCAAAT+TGG | + | chr5_1:5497661-5497680 | Msa0713340:CDS | 30.0% |
| TGACACAAACAAAACCAATT+TGG | - | chr5_1:5497678-5497697 | None:intergenic | 30.0% | |
| TTGGATTTGCATAACAATCT+GGG | - | chr5_1:5497771-5497790 | None:intergenic | 30.0% | |
| ATTAGTAGAAGACACTTACT+TGG | - | chr5_1:5497790-5497809 | None:intergenic | 30.0% | |
| TGTATACTGTCTCATTGAAT+CGG | - | chr5_1:5498064-5498083 | None:intergenic | 30.0% | |
| ! | ACTTTTTAAATATGGTGTGG+TGG | + | chr5_1:5498603-5498622 | Msa0713340:CDS | 30.0% |
| TATAGCCATTGTATTTGCAA+GGG | - | chr5_1:5498648-5498667 | None:intergenic | 30.0% | |
| TTATAGCCATTGTATTTGCA+AGG | - | chr5_1:5498649-5498668 | None:intergenic | 30.0% | |
| ACCAACATAGAGAATAAGAA+TGG | - | chr5_1:5498719-5498738 | None:intergenic | 30.0% | |
| ATTCTTATTCTCTATGTTGG+TGG | + | chr5_1:5498718-5498737 | Msa0713340:CDS | 30.0% | |
| TGAATTGGGTTTACTTGAAA+TGG | + | chr5_1:5498828-5498847 | Msa0713340:intron | 30.0% | |
| AAATTGTCAAAGCACAAAAG+AGG | - | chr5_1:5497622-5497641 | None:intergenic | 30.0% | |
| CAATTTGTCATTGAACATGA+TGG | + | chr5_1:5497636-5497655 | Msa0713340:exon | 30.0% | |
| !! | CCAATTTGGTGCTTAAAATT+AGG | - | chr5_1:5497664-5497683 | None:intergenic | 30.0% |
| ! | CCTAATTTTAAGCACCAAAT+TGG | + | chr5_1:5497661-5497680 | Msa0713340:CDS | 30.0% |
| TGACACAAACAAAACCAATT+TGG | - | chr5_1:5497678-5497697 | None:intergenic | 30.0% | |
| TTGGATTTGCATAACAATCT+GGG | - | chr5_1:5497771-5497790 | None:intergenic | 30.0% | |
| ATTAGTAGAAGACACTTACT+TGG | - | chr5_1:5497790-5497809 | None:intergenic | 30.0% | |
| TGTATACTGTCTCATTGAAT+CGG | - | chr5_1:5498064-5498083 | None:intergenic | 30.0% | |
| ! | ACTTTTTAAATATGGTGTGG+TGG | + | chr5_1:5498603-5498622 | Msa0713340:CDS | 30.0% |
| TATAGCCATTGTATTTGCAA+GGG | - | chr5_1:5498648-5498667 | None:intergenic | 30.0% | |
| TTATAGCCATTGTATTTGCA+AGG | - | chr5_1:5498649-5498668 | None:intergenic | 30.0% | |
| ACCAACATAGAGAATAAGAA+TGG | - | chr5_1:5498719-5498738 | None:intergenic | 30.0% | |
| ATTCTTATTCTCTATGTTGG+TGG | + | chr5_1:5498718-5498737 | Msa0713340:CDS | 30.0% | |
| TGAATTGGGTTTACTTGAAA+TGG | + | chr5_1:5498828-5498847 | Msa0713340:intron | 30.0% | |
| CTTGGATTTGCATAACAATC+TGG | - | chr5_1:5497772-5497791 | None:intergenic | 35.0% | |
| AAAAATTGACAGGGTTGAGT+AGG | - | chr5_1:5497975-5497994 | None:intergenic | 35.0% | |
| !!! | GAGTGTTGTGCACATTTTTT+AGG | + | chr5_1:5498008-5498027 | Msa0713340:intron | 35.0% |
| ACCTAGACATTGCATTACTT+TGG | + | chr5_1:5498102-5498121 | Msa0713340:intron | 35.0% | |
| !! | TGGCTATTAACCTGTTTTAG+AGG | + | chr5_1:5498152-5498171 | Msa0713340:intron | 35.0% |
| !! | GGCTATTAACCTGTTTTAGA+GGG | + | chr5_1:5498153-5498172 | Msa0713340:intron | 35.0% |
| TATGGACAGACAGTAAATGA+TGG | + | chr5_1:5498195-5498214 | Msa0713340:CDS | 35.0% | |
| AGAATCCCTTGCAAATACAA+TGG | + | chr5_1:5498640-5498659 | Msa0713340:CDS | 35.0% | |
| ATAAGAATGGCTAAGTAGTG+AGG | - | chr5_1:5498706-5498725 | None:intergenic | 35.0% | |
| GCCATTCTTATTCTCTATGT+TGG | + | chr5_1:5498715-5498734 | Msa0713340:CDS | 35.0% | |
| GGGTTTACTTGAAATGGTAA+TGG | + | chr5_1:5498834-5498853 | Msa0713340:intron | 35.0% | |
| !! | ACTTGAAATGGTAATGGAAC+AGG | + | chr5_1:5498840-5498859 | Msa0713340:intron | 35.0% |
| ATCACTAGAGATAACAGTCT+TGG | - | chr5_1:5498995-5499014 | None:intergenic | 35.0% | |
| AGACTGTTATCTCTAGTGAT+TGG | + | chr5_1:5498995-5499014 | Msa0713340:CDS | 35.0% | |
| GACTGTTATCTCTAGTGATT+GGG | + | chr5_1:5498996-5499015 | Msa0713340:CDS | 35.0% | |
| TTTATAGAATGACACAGACC+AGG | - | chr5_1:5499118-5499137 | None:intergenic | 35.0% | |
| ! | TTTTCTCCTCTACTTGTGTT+TGG | + | chr5_1:5499165-5499184 | Msa0713340:three_prime_UTR | 35.0% |
| CTTGGATTTGCATAACAATC+TGG | - | chr5_1:5497772-5497791 | None:intergenic | 35.0% | |
| AAAAATTGACAGGGTTGAGT+AGG | - | chr5_1:5497975-5497994 | None:intergenic | 35.0% | |
| !!! | GAGTGTTGTGCACATTTTTT+AGG | + | chr5_1:5498008-5498027 | Msa0713340:intron | 35.0% |
| ACCTAGACATTGCATTACTT+TGG | + | chr5_1:5498102-5498121 | Msa0713340:intron | 35.0% | |
| !! | TGGCTATTAACCTGTTTTAG+AGG | + | chr5_1:5498152-5498171 | Msa0713340:intron | 35.0% |
| !! | GGCTATTAACCTGTTTTAGA+GGG | + | chr5_1:5498153-5498172 | Msa0713340:intron | 35.0% |
| TATGGACAGACAGTAAATGA+TGG | + | chr5_1:5498195-5498214 | Msa0713340:CDS | 35.0% | |
| AGAATCCCTTGCAAATACAA+TGG | + | chr5_1:5498640-5498659 | Msa0713340:CDS | 35.0% | |
| ATAAGAATGGCTAAGTAGTG+AGG | - | chr5_1:5498706-5498725 | None:intergenic | 35.0% | |
| GCCATTCTTATTCTCTATGT+TGG | + | chr5_1:5498715-5498734 | Msa0713340:CDS | 35.0% | |
| GGGTTTACTTGAAATGGTAA+TGG | + | chr5_1:5498834-5498853 | Msa0713340:intron | 35.0% | |
| !! | ACTTGAAATGGTAATGGAAC+AGG | + | chr5_1:5498840-5498859 | Msa0713340:intron | 35.0% |
| ATCACTAGAGATAACAGTCT+TGG | - | chr5_1:5498995-5499014 | None:intergenic | 35.0% | |
| AGACTGTTATCTCTAGTGAT+TGG | + | chr5_1:5498995-5499014 | Msa0713340:CDS | 35.0% | |
| GACTGTTATCTCTAGTGATT+GGG | + | chr5_1:5498996-5499015 | Msa0713340:CDS | 35.0% | |
| TTTATAGAATGACACAGACC+AGG | - | chr5_1:5499118-5499137 | None:intergenic | 35.0% | |
| ! | TTTTCTCCTCTACTTGTGTT+TGG | + | chr5_1:5499165-5499184 | Msa0713340:three_prime_UTR | 35.0% |
| GCAAACAAAAGAGTCTTGAG+AGG | - | chr5_1:5497725-5497744 | None:intergenic | 40.0% | |
| !! | TGCTCTAGAGCAACCTATTA+TGG | + | chr5_1:5497742-5497761 | Msa0713340:CDS | 40.0% |
| ACAATCTGGGCTACCATAAT+AGG | - | chr5_1:5497758-5497777 | None:intergenic | 40.0% | |
| AATGCAATGTCTAGGTTCAC+CGG | - | chr5_1:5498098-5498117 | None:intergenic | 40.0% | |
| GCCAAAGTAATGCAATGTCT+AGG | - | chr5_1:5498106-5498125 | None:intergenic | 40.0% | |
| GTTTCTTCGCTATGGAAGAA+TGG | + | chr5_1:5498231-5498250 | Msa0713340:CDS | 40.0% | |
| TGCCCAAATTTGAATAGCCA+CGG | - | chr5_1:5498561-5498580 | None:intergenic | 40.0% | |
| ATGTAACTGCTGTTCAGTTG+TGG | + | chr5_1:5498749-5498768 | Msa0713340:CDS | 40.0% | |
| AACAGGAAGATTGCCAAGAA+TGG | + | chr5_1:5498857-5498876 | Msa0713340:intron | 40.0% | |
| ! | GACTAGTGTTTTACTGTTCC+TGG | + | chr5_1:5499097-5499116 | Msa0713340:three_prime_UTR | 40.0% |
| GCAAACAAAAGAGTCTTGAG+AGG | - | chr5_1:5497725-5497744 | None:intergenic | 40.0% | |
| !! | TGCTCTAGAGCAACCTATTA+TGG | + | chr5_1:5497742-5497761 | Msa0713340:CDS | 40.0% |
| ACAATCTGGGCTACCATAAT+AGG | - | chr5_1:5497758-5497777 | None:intergenic | 40.0% | |
| AATGCAATGTCTAGGTTCAC+CGG | - | chr5_1:5498098-5498117 | None:intergenic | 40.0% | |
| GCCAAAGTAATGCAATGTCT+AGG | - | chr5_1:5498106-5498125 | None:intergenic | 40.0% | |
| GTTTCTTCGCTATGGAAGAA+TGG | + | chr5_1:5498231-5498250 | Msa0713340:CDS | 40.0% | |
| TGCCCAAATTTGAATAGCCA+CGG | - | chr5_1:5498561-5498580 | None:intergenic | 40.0% | |
| ATGTAACTGCTGTTCAGTTG+TGG | + | chr5_1:5498749-5498768 | Msa0713340:CDS | 40.0% | |
| AACAGGAAGATTGCCAAGAA+TGG | + | chr5_1:5498857-5498876 | Msa0713340:intron | 40.0% | |
| ! | GACTAGTGTTTTACTGTTCC+TGG | + | chr5_1:5499097-5499116 | Msa0713340:three_prime_UTR | 40.0% |
| TCTTGAGAGGAACACAAGAC+AGG | - | chr5_1:5497712-5497731 | None:intergenic | 45.0% | |
| GCTTGTGGCTATGGTGATTA+TGG | + | chr5_1:5498177-5498196 | Msa0713340:CDS | 45.0% | |
| GTAAATGATGGCAATGTCGC+AGG | + | chr5_1:5498207-5498226 | Msa0713340:CDS | 45.0% | |
| TCGCTATGGAAGAATGGATC+TGG | + | chr5_1:5498237-5498256 | Msa0713340:CDS | 45.0% | |
| TGGAAGAATGGATCTGGTTG+TGG | + | chr5_1:5498243-5498262 | Msa0713340:CDS | 45.0% | |
| CCATTCTCGTCACACAATTC+TGG | - | chr5_1:5498478-5498497 | None:intergenic | 45.0% | |
| CCAGAATTGTGTGACGAGAA+TGG | + | chr5_1:5498475-5498494 | Msa0713340:CDS | 45.0% | |
| TGACGAGAATGGAGCATATG+TGG | + | chr5_1:5498486-5498505 | Msa0713340:CDS | 45.0% | |
| ! | TATGTGGTGGTGACCGATTT+CGG | + | chr5_1:5498502-5498521 | Msa0713340:CDS | 45.0% |
| TCCCCGTGGCTATTCAAATT+TGG | + | chr5_1:5498555-5498574 | Msa0713340:CDS | 45.0% | |
| CCCAAATTTGAATAGCCACG+GGG | - | chr5_1:5498559-5498578 | None:intergenic | 45.0% | |
| CCCCGTGGCTATTCAAATTT+GGG | + | chr5_1:5498556-5498575 | Msa0713340:CDS | 45.0% | |
| GCCCAAATTTGAATAGCCAC+GGG | - | chr5_1:5498560-5498579 | None:intergenic | 45.0% | |
| ! | GAGGATTTTTGCTGCGTTCA+TGG | - | chr5_1:5498687-5498706 | None:intergenic | 45.0% |
| AGGAAGATTGCCAAGAATGG+AGG | + | chr5_1:5498860-5498879 | Msa0713340:intron | 45.0% | |
| ACTTGATCTCACCTCTTGGA+GGG | - | chr5_1:5498927-5498946 | None:intergenic | 45.0% | |
| AACTTGATCTCACCTCTTGG+AGG | - | chr5_1:5498928-5498947 | None:intergenic | 45.0% | |
| CTCAACTTGATCTCACCTCT+TGG | - | chr5_1:5498931-5498950 | None:intergenic | 45.0% | |
| ! | CAAGAGGTGAGATCAAGTTG+AGG | + | chr5_1:5498929-5498948 | Msa0713340:CDS | 45.0% |
| ATCTCTAGTGATTGGGAAGC+TGG | + | chr5_1:5499003-5499022 | Msa0713340:CDS | 45.0% | |
| TCTCTAGTGATTGGGAAGCT+GGG | + | chr5_1:5499004-5499023 | Msa0713340:CDS | 45.0% | |
| TCTTGAGAGGAACACAAGAC+AGG | - | chr5_1:5497712-5497731 | None:intergenic | 45.0% | |
| GCTTGTGGCTATGGTGATTA+TGG | + | chr5_1:5498177-5498196 | Msa0713340:CDS | 45.0% | |
| GTAAATGATGGCAATGTCGC+AGG | + | chr5_1:5498207-5498226 | Msa0713340:CDS | 45.0% | |
| TCGCTATGGAAGAATGGATC+TGG | + | chr5_1:5498237-5498256 | Msa0713340:CDS | 45.0% | |
| TGGAAGAATGGATCTGGTTG+TGG | + | chr5_1:5498243-5498262 | Msa0713340:CDS | 45.0% | |
| CCATTCTCGTCACACAATTC+TGG | - | chr5_1:5498478-5498497 | None:intergenic | 45.0% | |
| CCAGAATTGTGTGACGAGAA+TGG | + | chr5_1:5498475-5498494 | Msa0713340:CDS | 45.0% | |
| TGACGAGAATGGAGCATATG+TGG | + | chr5_1:5498486-5498505 | Msa0713340:CDS | 45.0% | |
| ! | TATGTGGTGGTGACCGATTT+CGG | + | chr5_1:5498502-5498521 | Msa0713340:CDS | 45.0% |
| TCCCCGTGGCTATTCAAATT+TGG | + | chr5_1:5498555-5498574 | Msa0713340:CDS | 45.0% | |
| CCCAAATTTGAATAGCCACG+GGG | - | chr5_1:5498559-5498578 | None:intergenic | 45.0% | |
| CCCCGTGGCTATTCAAATTT+GGG | + | chr5_1:5498556-5498575 | Msa0713340:CDS | 45.0% | |
| GCCCAAATTTGAATAGCCAC+GGG | - | chr5_1:5498560-5498579 | None:intergenic | 45.0% | |
| ! | GAGGATTTTTGCTGCGTTCA+TGG | - | chr5_1:5498687-5498706 | None:intergenic | 45.0% |
| AGGAAGATTGCCAAGAATGG+AGG | + | chr5_1:5498860-5498879 | Msa0713340:intron | 45.0% | |
| ACTTGATCTCACCTCTTGGA+GGG | - | chr5_1:5498927-5498946 | None:intergenic | 45.0% | |
| AACTTGATCTCACCTCTTGG+AGG | - | chr5_1:5498928-5498947 | None:intergenic | 45.0% | |
| CTCAACTTGATCTCACCTCT+TGG | - | chr5_1:5498931-5498950 | None:intergenic | 45.0% | |
| ! | CAAGAGGTGAGATCAAGTTG+AGG | + | chr5_1:5498929-5498948 | Msa0713340:CDS | 45.0% |
| ATCTCTAGTGATTGGGAAGC+TGG | + | chr5_1:5499003-5499022 | Msa0713340:CDS | 45.0% | |
| TCTCTAGTGATTGGGAAGCT+GGG | + | chr5_1:5499004-5499023 | Msa0713340:CDS | 45.0% | |
| !! | CCACAAGCTCCCTCTAAAAC+AGG | - | chr5_1:5498165-5498184 | None:intergenic | 50.0% |
| !!! | CCTGTTTTAGAGGGAGCTTG+TGG | + | chr5_1:5498162-5498181 | Msa0713340:intron | 50.0% |
| TTAGAGGGAGCTTGTGGCTA+TGG | + | chr5_1:5498168-5498187 | Msa0713340:intron | 50.0% | |
| CGAGAATGGAGCATATGTGG+TGG | + | chr5_1:5498489-5498508 | Msa0713340:CDS | 50.0% | |
| CCTATCTCCCACACCGAAAT+CGG | - | chr5_1:5498518-5498537 | None:intergenic | 50.0% | |
| AACTGCTGTTCAGTTGTGGC+AGG | + | chr5_1:5498753-5498772 | Msa0713340:CDS | 50.0% | |
| ! | TACGCATTGGCCTCCATTCT+TGG | - | chr5_1:5498873-5498892 | None:intergenic | 50.0% |
| AAGAATGGAGGCCAATGCGT+AGG | + | chr5_1:5498872-5498891 | Msa0713340:CDS | 50.0% | |
| AGAATGGAGGCCAATGCGTA+GGG | + | chr5_1:5498873-5498892 | Msa0713340:CDS | 50.0% | |
| GTTCCAAATGCCCTACGCAT+TGG | - | chr5_1:5498886-5498905 | None:intergenic | 50.0% | |
| AAGTTGAGGCTCCAAGTGAG+TGG | + | chr5_1:5498943-5498962 | Msa0713340:CDS | 50.0% | |
| ! | TCCAAGTGAGTGGTAGTGCT+GGG | + | chr5_1:5498953-5498972 | Msa0713340:CDS | 50.0% |
| ! | TGGTAGTGCTGGGCTGTATT+GGG | + | chr5_1:5498963-5498982 | Msa0713340:CDS | 50.0% |
| CTCTAGTGATTGGGAAGCTG+GGG | + | chr5_1:5499005-5499024 | Msa0713340:CDS | 50.0% | |
| !! | CCACAAGCTCCCTCTAAAAC+AGG | - | chr5_1:5498165-5498184 | None:intergenic | 50.0% |
| !!! | CCTGTTTTAGAGGGAGCTTG+TGG | + | chr5_1:5498162-5498181 | Msa0713340:intron | 50.0% |
| TTAGAGGGAGCTTGTGGCTA+TGG | + | chr5_1:5498168-5498187 | Msa0713340:intron | 50.0% | |
| CGAGAATGGAGCATATGTGG+TGG | + | chr5_1:5498489-5498508 | Msa0713340:CDS | 50.0% | |
| CCTATCTCCCACACCGAAAT+CGG | - | chr5_1:5498518-5498537 | None:intergenic | 50.0% | |
| AACTGCTGTTCAGTTGTGGC+AGG | + | chr5_1:5498753-5498772 | Msa0713340:CDS | 50.0% | |
| ! | TACGCATTGGCCTCCATTCT+TGG | - | chr5_1:5498873-5498892 | None:intergenic | 50.0% |
| AAGAATGGAGGCCAATGCGT+AGG | + | chr5_1:5498872-5498891 | Msa0713340:CDS | 50.0% | |
| AGAATGGAGGCCAATGCGTA+GGG | + | chr5_1:5498873-5498892 | Msa0713340:CDS | 50.0% | |
| GTTCCAAATGCCCTACGCAT+TGG | - | chr5_1:5498886-5498905 | None:intergenic | 50.0% | |
| AAGTTGAGGCTCCAAGTGAG+TGG | + | chr5_1:5498943-5498962 | Msa0713340:CDS | 50.0% | |
| ! | TCCAAGTGAGTGGTAGTGCT+GGG | + | chr5_1:5498953-5498972 | Msa0713340:CDS | 50.0% |
| ! | TGGTAGTGCTGGGCTGTATT+GGG | + | chr5_1:5498963-5498982 | Msa0713340:CDS | 50.0% |
| CTCTAGTGATTGGGAAGCTG+GGG | + | chr5_1:5499005-5499024 | Msa0713340:CDS | 50.0% | |
| TCGCAGGCGTTTCTTCGCTA+TGG | + | chr5_1:5498223-5498242 | Msa0713340:CDS | 55.0% | |
| ! | GTGGTGACCGATTTCGGTGT+GGG | + | chr5_1:5498508-5498527 | Msa0713340:CDS | 55.0% |
| ! | CCGATTTCGGTGTGGGAGAT+AGG | + | chr5_1:5498515-5498534 | Msa0713340:CDS | 55.0% |
| GACTTCATCATGAGTCCCCG+TGG | + | chr5_1:5498541-5498560 | Msa0713340:CDS | 55.0% | |
| ! | AGGCCAATGCGTAGGGCATT+TGG | + | chr5_1:5498880-5498899 | Msa0713340:CDS | 55.0% |
| GATGCAGAGAACCCTCCAAG+AGG | + | chr5_1:5498913-5498932 | Msa0713340:CDS | 55.0% | |
| ! | CTCCAAGTGAGTGGTAGTGC+TGG | + | chr5_1:5498952-5498971 | Msa0713340:CDS | 55.0% |
| ! | GTGGTAGTGCTGGGCTGTAT+TGG | + | chr5_1:5498962-5498981 | Msa0713340:CDS | 55.0% |
| ! | TAGTGCTGGGCTGTATTGGG+TGG | + | chr5_1:5498966-5498985 | Msa0713340:CDS | 55.0% |
| TCGCAGGCGTTTCTTCGCTA+TGG | + | chr5_1:5498223-5498242 | Msa0713340:CDS | 55.0% | |
| ! | GTGGTGACCGATTTCGGTGT+GGG | + | chr5_1:5498508-5498527 | Msa0713340:CDS | 55.0% |
| ! | CCGATTTCGGTGTGGGAGAT+AGG | + | chr5_1:5498515-5498534 | Msa0713340:CDS | 55.0% |
| GACTTCATCATGAGTCCCCG+TGG | + | chr5_1:5498541-5498560 | Msa0713340:CDS | 55.0% | |
| ! | AGGCCAATGCGTAGGGCATT+TGG | + | chr5_1:5498880-5498899 | Msa0713340:CDS | 55.0% |
| GATGCAGAGAACCCTCCAAG+AGG | + | chr5_1:5498913-5498932 | Msa0713340:CDS | 55.0% | |
| ! | CTCCAAGTGAGTGGTAGTGC+TGG | + | chr5_1:5498952-5498971 | Msa0713340:CDS | 55.0% |
| ! | GTGGTAGTGCTGGGCTGTAT+TGG | + | chr5_1:5498962-5498981 | Msa0713340:CDS | 55.0% |
| ! | TAGTGCTGGGCTGTATTGGG+TGG | + | chr5_1:5498966-5498985 | Msa0713340:CDS | 55.0% |
| ! | GGTGGTGACCGATTTCGGTG+TGG | + | chr5_1:5498507-5498526 | Msa0713340:CDS | 60.0% |
| GCCCAGCACTACCACTCACT+TGG | - | chr5_1:5498957-5498976 | None:intergenic | 60.0% | |
| ! | GGTGGTGACCGATTTCGGTG+TGG | + | chr5_1:5498507-5498526 | Msa0713340:CDS | 60.0% |
| GCCCAGCACTACCACTCACT+TGG | - | chr5_1:5498957-5498976 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 5497554 | 5499188 | 5497554 | ID=Msa0713340;Name=Msa0713340 |
| chr5_1 | mRNA | 5497554 | 5499188 | 5497554 | ID=Msa0713340-mRNA-1;Parent=Msa0713340;Name=Msa0713340-mRNA-1;_AED=0.05;_eAED=0.05;_QI=98|1|1|1|1|1|4|129|252 |
| chr5_1 | exon | 5497554 | 5497790 | 5497554 | ID=Msa0713340-mRNA-1:exon:2423;Parent=Msa0713340-mRNA-1 |
| chr5_1 | exon | 5498172 | 5498278 | 5498172 | ID=Msa0713340-mRNA-1:exon:2424;Parent=Msa0713340-mRNA-1 |
| chr5_1 | exon | 5498460 | 5498774 | 5498460 | ID=Msa0713340-mRNA-1:exon:2425;Parent=Msa0713340-mRNA-1 |
| chr5_1 | exon | 5498862 | 5499188 | 5498862 | ID=Msa0713340-mRNA-1:exon:2426;Parent=Msa0713340-mRNA-1 |
| chr5_1 | five_prime_UTR | 5497554 | 5497651 | 5497554 | ID=Msa0713340-mRNA-1:five_prime_utr;Parent=Msa0713340-mRNA-1 |
| chr5_1 | CDS | 5497652 | 5497790 | 5497652 | ID=Msa0713340-mRNA-1:cds;Parent=Msa0713340-mRNA-1 |
| chr5_1 | CDS | 5498172 | 5498278 | 5498172 | ID=Msa0713340-mRNA-1:cds;Parent=Msa0713340-mRNA-1 |
| chr5_1 | CDS | 5498460 | 5498774 | 5498460 | ID=Msa0713340-mRNA-1:cds;Parent=Msa0713340-mRNA-1 |
| chr5_1 | CDS | 5498862 | 5499059 | 5498862 | ID=Msa0713340-mRNA-1:cds;Parent=Msa0713340-mRNA-1 |
| chr5_1 | three_prime_UTR | 5499060 | 5499188 | 5499060 | ID=Msa0713340-mRNA-1:three_prime_utr;Parent=Msa0713340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
