Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834330 | XP_003611388.2 | 87.302 | 252 | 8 | 1 | 1 | 228 | 1 | 252 | 1.75e-158 | 449 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834330 | sp|O23547|EXLB1_ARATH | 55.230 | 239 | 80 | 3 | 12 | 225 | 11 | 247 | 1.63e-92 | 274 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834330 | G7JYL2 | 87.302 | 252 | 8 | 1 | 1 | 228 | 1 | 252 | 8.34e-159 | 449 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030300 | Msa0834330 | 0.803650 | 3.149809e-49 | -8.615850e-47 |
| Msa0034970 | Msa0834330 | 0.809203 | 2.124990e-50 | -8.615850e-47 |
| Msa0051630 | Msa0834330 | 0.824528 | 7.687952e-54 | -8.615850e-47 |
| Msa0051740 | Msa0834330 | 0.832189 | 1.089471e-55 | -8.615850e-47 |
| Msa0051750 | Msa0834330 | 0.822534 | 2.250045e-53 | -8.615850e-47 |
| Msa0071250 | Msa0834330 | 0.813885 | 2.040754e-51 | -8.615850e-47 |
| Msa0103790 | Msa0834330 | 0.813523 | 2.451442e-51 | -8.615850e-47 |
| Msa0105520 | Msa0834330 | 0.819039 | 1.431638e-52 | -8.615850e-47 |
| Msa0106620 | Msa0834330 | 0.821636 | 3.634799e-53 | -8.615850e-47 |
| Msa0106710 | Msa0834330 | 0.822228 | 2.650397e-53 | -8.615850e-47 |
| Msa0628420 | Msa0834330 | 0.808941 | 2.418137e-50 | -8.615850e-47 |
| Msa0640940 | Msa0834330 | 0.824740 | 6.853888e-54 | -8.615850e-47 |
| Msa0642970 | Msa0834330 | 0.808255 | 3.387630e-50 | -8.615850e-47 |
| Msa0643320 | Msa0834330 | 0.808086 | 3.680195e-50 | -8.615850e-47 |
| Msa0662630 | Msa0834330 | 0.802887 | 4.533447e-49 | -8.615850e-47 |
| Msa0673270 | Msa0834330 | 0.817199 | 3.732724e-52 | -8.615850e-47 |
| Msa0679360 | Msa0834330 | 0.831386 | 1.718989e-55 | -8.615850e-47 |
| Msa0682680 | Msa0834330 | 0.815928 | 7.190229e-52 | -8.615850e-47 |
| Msa0703440 | Msa0834330 | 0.801822 | 7.511505e-49 | -8.615850e-47 |
| Msa0705990 | Msa0834330 | 0.805793 | 1.124434e-49 | -8.615850e-47 |
| Msa0709160 | Msa0834330 | 0.846769 | 1.763995e-59 | -8.615850e-47 |
| Msa0713340 | Msa0834330 | 0.987370 | 5.153798e-170 | -8.615850e-47 |
| Msa0721280 | Msa0834330 | 0.809960 | 1.461150e-50 | -8.615850e-47 |
| Msa0732600 | Msa0834330 | 0.805722 | 1.163692e-49 | -8.615850e-47 |
| Msa0750250 | Msa0834330 | 0.808918 | 2.445807e-50 | -8.615850e-47 |
| Msa0754930 | Msa0834330 | 0.989429 | 4.403546e-178 | -8.615850e-47 |
| Msa0763890 | Msa0834330 | 0.801484 | 8.810669e-49 | -8.615850e-47 |
| Msa0763920 | Msa0834330 | 0.803711 | 3.060062e-49 | -8.615850e-47 |
| Msa0773590 | Msa0834330 | 0.816214 | 6.206427e-52 | -8.615850e-47 |
| Msa0794730 | Msa0834330 | 0.802071 | 6.675058e-49 | -8.615850e-47 |
| Msa0799340 | Msa0834330 | 0.986318 | 2.170430e-166 | -8.615850e-47 |
| Msa0800370 | Msa0834330 | 0.811459 | 6.927934e-51 | -8.615850e-47 |
| Msa0811040 | Msa0834330 | 0.827288 | 1.699364e-54 | -8.615850e-47 |
| Msa0826150 | Msa0834330 | 0.805621 | 1.221703e-49 | -8.615850e-47 |
| Msa0833190 | Msa0834330 | -0.809558 | 1.782755e-50 | -8.615850e-47 |
| Msa0834330 | Msa0870650 | 0.827145 | 1.838871e-54 | -8.615850e-47 |
| Msa0834330 | Msa0892640 | 0.803337 | 3.658794e-49 | -8.615850e-47 |
| Msa0834330 | Msa0903780 | 0.826519 | 2.594356e-54 | -8.615850e-47 |
| Msa0834330 | Msa0905750 | 0.840032 | 1.110223e-57 | -8.615850e-47 |
| Msa0834330 | Msa0932570 | 0.800660 | 1.298727e-48 | -8.615850e-47 |
| Msa0834330 | Msa0934140 | 0.818580 | 1.819991e-52 | -8.615850e-47 |
| Msa0834330 | Msa0944200 | 0.802035 | 6.791554e-49 | -8.615850e-47 |
| Msa0834330 | Msa0947800 | 0.803759 | 2.990808e-49 | -8.615850e-47 |
| Msa0834330 | Msa0958030 | 0.828799 | 7.354514e-55 | -8.615850e-47 |
| Msa0834330 | Msa0970530 | 0.802740 | 4.859489e-49 | -8.615850e-47 |
| Msa0834330 | Msa0970600 | 0.801497 | 8.758428e-49 | -8.615850e-47 |
| Msa0834330 | Msa0974950 | 0.813511 | 2.467136e-51 | -8.615850e-47 |
| Msa0834330 | Msa0980540 | 0.821192 | 4.601285e-53 | -8.615850e-47 |
| Msa0834330 | Msa0992580 | 0.829100 | 6.217412e-55 | -8.615850e-47 |
| Msa0834330 | Msa1027250 | 0.808211 | 3.461751e-50 | -8.615850e-47 |
| Msa0834330 | Msa1027300 | 0.811019 | 8.630121e-51 | -8.615850e-47 |
| Msa0834330 | Msa1027360 | 0.806933 | 6.465014e-50 | -8.615850e-47 |
| Msa0834330 | Msa1042660 | 0.801880 | 7.308392e-49 | -8.615850e-47 |
| Msa0834330 | Msa1063420 | 0.815828 | 7.568130e-52 | -8.615850e-47 |
| Msa0834330 | Msa1093100 | 0.832653 | 8.362141e-56 | -8.615850e-47 |
| Msa0834330 | Msa1131490 | 0.806976 | 6.331497e-50 | -8.615850e-47 |
| Msa0834330 | Msa1178580 | 0.824388 | 8.293276e-54 | -8.615850e-47 |
| Msa0834330 | Msa1188560 | 0.808583 | 2.883978e-50 | -8.615850e-47 |
| Msa0834330 | Msa1205480 | 0.827677 | 1.370692e-54 | -8.615850e-47 |
| Msa0834330 | Msa1205590 | 0.845371 | 4.233581e-59 | -8.615850e-47 |
| Msa0834330 | Msa1206650 | 0.835483 | 1.634329e-56 | -8.615850e-47 |
| Msa0834330 | Msa1209670 | 0.838909 | 2.173358e-57 | -8.615850e-47 |
| Msa0834330 | Msa1212950 | 0.804115 | 2.521522e-49 | -8.615850e-47 |
| Msa0834330 | Msa1233850 | 0.841543 | 4.459546e-58 | -8.615850e-47 |
| Msa0834330 | Msa1250110 | 0.802315 | 5.947746e-49 | -8.615850e-47 |
| Msa0834330 | Msa1250530 | 0.807615 | 4.635427e-50 | -8.615850e-47 |
| Msa0834330 | Msa1257070 | 0.809576 | 1.767044e-50 | -8.615850e-47 |
| Msa0834330 | Msa1264420 | 0.811971 | 5.361567e-51 | -8.615850e-47 |
| Msa0834330 | Msa1270660 | 0.813672 | 2.273845e-51 | -8.615850e-47 |
| Msa0834330 | Msa1276150 | 0.824121 | 9.583202e-54 | -8.615850e-47 |
| Msa0834330 | Msa1276970 | 0.814423 | 1.552362e-51 | -8.615850e-47 |
| Msa0834330 | Msa1293400 | 0.823467 | 1.363889e-53 | -8.615850e-47 |
| Msa0834330 | Msa1297530 | 0.821880 | 3.190974e-53 | -8.615850e-47 |
| Msa0834330 | Msa1307180 | 0.818460 | 1.938067e-52 | -8.615850e-47 |
| Msa0834330 | Msa1315750 | 0.818050 | 2.399265e-52 | -8.615850e-47 |
| Msa0834330 | Msa1316360 | 0.808669 | 2.764949e-50 | -8.615850e-47 |
| Msa0834330 | Msa1320820 | 0.829501 | 4.969726e-55 | -8.615850e-47 |
| Msa0834330 | Msa1323690 | 0.812591 | 3.925943e-51 | -8.615850e-47 |
| Msa0834330 | Msa1336040 | 0.805069 | 1.594519e-49 | -8.615850e-47 |
| Msa0834330 | Msa1336560 | 0.813233 | 2.838652e-51 | -8.615850e-47 |
| Msa0834330 | Msa1337170 | 0.834965 | 2.208662e-56 | -8.615850e-47 |
| Msa0834330 | Msa1351540 | 0.808160 | 3.549078e-50 | -8.615850e-47 |
| Msa0834330 | Msa1356610 | 0.816974 | 4.193541e-52 | -8.615850e-47 |
| Msa0834330 | Msa1357890 | 0.809586 | 1.758667e-50 | -8.615850e-47 |
| Msa0834330 | Msa1362420 | 0.802656 | 5.058423e-49 | -8.615850e-47 |
| Msa0834330 | Msa1368430 | 0.801778 | 7.668091e-49 | -8.615850e-47 |
| Msa0834330 | Msa1370590 | 0.833057 | 6.634461e-56 | -8.615850e-47 |
| Msa0834330 | Msa1371240 | 0.805511 | 1.288944e-49 | -8.615850e-47 |
| Msa0834330 | Msa1383230 | 0.803283 | 3.753305e-49 | -8.615850e-47 |
| Msa0834330 | Msa1384100 | 0.831934 | 1.259318e-55 | -8.615850e-47 |
| Msa0834330 | Msa1395730 | 0.802495 | 5.461102e-49 | -8.615850e-47 |
| Msa0834330 | Msa1398090 | 0.813203 | 2.882795e-51 | -8.615850e-47 |
| Msa0834330 | Msa1410420 | 0.814074 | 1.853506e-51 | -8.615850e-47 |
| Msa0834330 | Msa1411950 | 0.801968 | 7.009673e-49 | -8.615850e-47 |
| Msa0834330 | Msa1416260 | 0.807788 | 4.260011e-50 | -8.615850e-47 |
| Msa0834330 | Msa1432480 | 0.816143 | 6.436087e-52 | -8.615850e-47 |
| Msa0834330 | Msa1442790 | 0.818084 | 2.357139e-52 | -8.615850e-47 |
| Msa0834330 | Msa1444120 | 0.831248 | 1.859382e-55 | -8.615850e-47 |
| Msa0834330 | Msa1450720 | 0.800991 | 1.111345e-48 | -8.615850e-47 |
| Msa0834330 | Msa1451150 | 0.822176 | 2.724564e-53 | -8.615850e-47 |
| Msa0834330 | Msa1454530 | 0.810640 | 1.042350e-50 | -8.615850e-47 |
| Msa0834330 | Msa1454960 | 0.807462 | 4.994658e-50 | -8.615850e-47 |
| Msa0834330 | Msa1456230 | 0.804989 | 1.657653e-49 | -8.615850e-47 |
| Msa0834330 | Msa1458610 | 0.817793 | 2.742863e-52 | -8.615850e-47 |
| Msa0834330 | Msa1459960 | 0.800626 | 1.319573e-48 | -8.615850e-47 |
| Msa0123510 | Msa0834330 | 0.821218 | 4.537097e-53 | -8.615850e-47 |
| Msa0126790 | Msa0834330 | 0.807551 | 4.783375e-50 | -8.615850e-47 |
| Msa0136120 | Msa0834330 | 0.808047 | 3.751356e-50 | -8.615850e-47 |
| Msa0141400 | Msa0834330 | 0.803904 | 2.790520e-49 | -8.615850e-47 |
| Msa0142500 | Msa0834330 | 0.805788 | 1.127093e-49 | -8.615850e-47 |
| Msa0146080 | Msa0834330 | 0.831879 | 1.299651e-55 | -8.615850e-47 |
| Msa0147980 | Msa0834330 | 0.810723 | 1.000283e-50 | -8.615850e-47 |
| Msa0150260 | Msa0834330 | 0.804741 | 1.868000e-49 | -8.615850e-47 |
| Msa0171870 | Msa0834330 | 0.805194 | 1.501478e-49 | -8.615850e-47 |
| Msa0171980 | Msa0834330 | 0.810846 | 9.405958e-51 | -8.615850e-47 |
| Msa0175840 | Msa0834330 | 0.805310 | 1.419806e-49 | -8.615850e-47 |
| Msa0187490 | Msa0834330 | 0.800990 | 1.112004e-48 | -8.615850e-47 |
| Msa0190120 | Msa0834330 | 0.844212 | 8.695334e-59 | -8.615850e-47 |
| Msa0192640 | Msa0834330 | 0.801581 | 8.418023e-49 | -8.615850e-47 |
| Msa0205010 | Msa0834330 | 0.807981 | 3.876181e-50 | -8.615850e-47 |
| Msa0206830 | Msa0834330 | 0.801472 | 8.859529e-49 | -8.615850e-47 |
| Msa0207030 | Msa0834330 | 0.823486 | 1.350039e-53 | -8.615850e-47 |
| Msa0209500 | Msa0834330 | 0.804405 | 2.194353e-49 | -8.615850e-47 |
| Msa0381000 | Msa0834330 | 0.800074 | 1.709422e-48 | -8.615850e-47 |
| Msa0390480 | Msa0834330 | 0.810746 | 9.890463e-51 | -8.615850e-47 |
| Msa0395980 | Msa0834330 | 0.809637 | 1.715165e-50 | -8.615850e-47 |
| Msa0403770 | Msa0834330 | 0.824735 | 6.872666e-54 | -8.615850e-47 |
| Msa0427580 | Msa0834330 | 0.804990 | 1.656670e-49 | -8.615850e-47 |
| Msa0443430 | Msa0834330 | 0.820702 | 5.966392e-53 | -8.615850e-47 |
| Msa0450400 | Msa0834330 | -0.805948 | 1.043268e-49 | -8.615850e-47 |
| Msa0482040 | Msa0834330 | 0.817986 | 2.480878e-52 | -8.615850e-47 |
| Msa0244970 | Msa0834330 | 0.836040 | 1.180944e-56 | -8.615850e-47 |
| Msa0244980 | Msa0834330 | 0.843975 | 1.006577e-58 | -8.615850e-47 |
| Msa0249580 | Msa0834330 | 0.803377 | 3.588656e-49 | -8.615850e-47 |
| Msa0271890 | Msa0834330 | 0.818965 | 1.488184e-52 | -8.615850e-47 |
| Msa0283420 | Msa0834330 | 0.842108 | 3.161393e-58 | -8.615850e-47 |
| Msa0285330 | Msa0834330 | 0.821189 | 4.607444e-53 | -8.615850e-47 |
| Msa0296790 | Msa0834330 | 0.811405 | 7.118246e-51 | -8.615850e-47 |
| Msa0296920 | Msa0834330 | 0.800810 | 1.210362e-48 | -8.615850e-47 |
| Msa0304840 | Msa0834330 | 0.805867 | 1.084806e-49 | -8.615850e-47 |
| Msa0307960 | Msa0834330 | 0.803507 | 3.372451e-49 | -8.615850e-47 |
| Msa0309270 | Msa0834330 | 0.804358 | 2.245084e-49 | -8.615850e-47 |
| Msa0310860 | Msa0834330 | 0.814529 | 1.470881e-51 | -8.615850e-47 |
| Msa0321690 | Msa0834330 | 0.843875 | 1.070346e-58 | -8.615850e-47 |
| Msa0322900 | Msa0834330 | 0.823449 | 1.376868e-53 | -8.615850e-47 |
| Msa0324240 | Msa0834330 | 0.800906 | 1.157063e-48 | -8.615850e-47 |
| Msa0363060 | Msa0834330 | 0.808427 | 3.114208e-50 | -8.615850e-47 |
| Msa0363640 | Msa0834330 | 0.810654 | 1.035405e-50 | -8.615850e-47 |
| Msa0482940 | Msa0834330 | 0.832136 | 1.122811e-55 | -8.615850e-47 |
| Msa0484740 | Msa0834330 | 0.803095 | 4.106006e-49 | -8.615850e-47 |
| Msa0489660 | Msa0834330 | 0.824506 | 7.779306e-54 | -8.615850e-47 |
| Msa0491000 | Msa0834330 | 0.815769 | 7.801170e-52 | -8.615850e-47 |
| Msa0511770 | Msa0834330 | 0.804405 | 2.194614e-49 | -8.615850e-47 |
| Msa0518030 | Msa0834330 | 0.801296 | 9.626531e-49 | -8.615850e-47 |
| Msa0518170 | Msa0834330 | 0.822465 | 2.335072e-53 | -8.615850e-47 |
| Msa0531250 | Msa0834330 | 0.807448 | 5.031092e-50 | -8.615850e-47 |
| Msa0542290 | Msa0834330 | 0.816185 | 6.300870e-52 | -8.615850e-47 |
| Msa0547160 | Msa0834330 | 0.835869 | 1.305281e-56 | -8.615850e-47 |
| Msa0547990 | Msa0834330 | 0.805285 | 1.437201e-49 | -8.615850e-47 |
| Msa0566350 | Msa0834330 | 0.813559 | 2.408021e-51 | -8.615850e-47 |
| Msa0566750 | Msa0834330 | 0.812944 | 3.286184e-51 | -8.615850e-47 |
| Msa0600080 | Msa0834330 | 0.802062 | 6.703883e-49 | -8.615850e-47 |
| Msa0600450 | Msa0834330 | 0.824244 | 8.963979e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834330 | MtrunA17_Chr5g0399811 | 87.302 | 252 | 8 | 1 | 1 | 228 | 1 | 252 | 1.61e-162 | 449 |
| Msa0834330 | MtrunA17_Chr4g0055561 | 65.737 | 251 | 62 | 1 | 2 | 228 | 1 | 251 | 1.57e-124 | 353 |
| Msa0834330 | MtrunA17_Chr4g0055601 | 53.600 | 250 | 91 | 1 | 2 | 226 | 1 | 250 | 4.71e-99 | 288 |
| Msa0834330 | MtrunA17_Chr4g0055061 | 34.661 | 251 | 132 | 3 | 10 | 228 | 3 | 253 | 3.48e-45 | 151 |
| Msa0834330 | MtrunA17_Chr4g0038741 | 33.937 | 221 | 118 | 3 | 32 | 227 | 26 | 243 | 1.17e-41 | 142 |
| Msa0834330 | MtrunA17_Chr4g0055581 | 54.255 | 94 | 42 | 1 | 71 | 163 | 13 | 106 | 7.96e-29 | 104 |
| Msa0834330 | MtrunA17_Chr7g0231211 | 27.799 | 259 | 142 | 8 | 10 | 227 | 16 | 270 | 1.71e-20 | 87.0 |
| Msa0834330 | MtrunA17_Chr2g0324201 | 26.667 | 225 | 130 | 7 | 34 | 228 | 38 | 257 | 1.46e-19 | 84.3 |
| Msa0834330 | MtrunA17_Chr2g0324221 | 25.446 | 224 | 132 | 6 | 34 | 227 | 40 | 258 | 1.38e-18 | 81.6 |
| Msa0834330 | MtrunA17_Chr4g0012801 | 25.974 | 231 | 137 | 7 | 26 | 227 | 39 | 264 | 1.48e-18 | 82.0 |
| Msa0834330 | MtrunA17_Chr4g0021641 | 25.893 | 224 | 131 | 6 | 34 | 227 | 46 | 264 | 2.20e-17 | 78.6 |
| Msa0834330 | MtrunA17_Chr4g0057091 | 22.308 | 260 | 151 | 10 | 12 | 228 | 11 | 262 | 7.98e-12 | 63.2 |
| Msa0834330 | MtrunA17_Chr8g0360041 | 25.000 | 252 | 149 | 10 | 9 | 227 | 10 | 254 | 1.32e-11 | 62.4 |
| Msa0834330 | MtrunA17_Chr7g0218741 | 23.577 | 246 | 149 | 8 | 15 | 227 | 14 | 253 | 6.56e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0834330 | AT4G17030.1 | 55.230 | 239 | 80 | 3 | 12 | 225 | 11 | 247 | 1.66e-93 | 274 |
| Msa0834330 | AT4G38400.1 | 38.824 | 170 | 103 | 1 | 59 | 227 | 79 | 248 | 1.12e-37 | 132 |
| Msa0834330 | AT3G45970.2 | 38.012 | 171 | 104 | 2 | 59 | 227 | 51 | 221 | 5.04e-37 | 130 |
| Msa0834330 | AT3G45970.1 | 38.012 | 171 | 104 | 2 | 59 | 227 | 78 | 248 | 1.02e-36 | 130 |
| Msa0834330 | AT3G45960.1 | 35.882 | 170 | 108 | 1 | 59 | 227 | 30 | 199 | 1.38e-36 | 128 |
| Msa0834330 | AT3G45960.2 | 35.882 | 170 | 108 | 1 | 59 | 227 | 78 | 247 | 4.34e-36 | 128 |
| Msa0834330 | AT1G65680.1 | 27.119 | 236 | 136 | 8 | 24 | 227 | 42 | 273 | 1.56e-20 | 87.8 |
| Msa0834330 | AT4G28250.1 | 25.573 | 262 | 152 | 8 | 6 | 228 | 4 | 261 | 4.80e-18 | 80.9 |
| Msa0834330 | AT5G05290.1 | 27.477 | 222 | 123 | 9 | 33 | 222 | 36 | 251 | 2.65e-14 | 70.5 |
| Msa0834330 | AT2G40610.1 | 25.984 | 254 | 149 | 10 | 1 | 221 | 1 | 248 | 1.02e-12 | 65.9 |
| Msa0834330 | AT5G39290.1 | 26.496 | 234 | 119 | 11 | 32 | 227 | 61 | 279 | 2.69e-12 | 65.1 |
| Msa0834330 | AT5G39270.1 | 26.496 | 234 | 119 | 11 | 32 | 227 | 61 | 279 | 2.78e-11 | 62.0 |
| Msa0834330 | AT5G39310.1 | 25.110 | 227 | 130 | 9 | 33 | 227 | 94 | 312 | 4.23e-11 | 62.0 |
Find 66 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAATTTGGTGCTTAAAATT+AGG | 0.152890 | 5_4:+7346011 | None:intergenic |
| TCCCCGTGGCTATTCAAATT+TGG | 0.158342 | 5_4:-7345108 | Msa0834330:CDS |
| TGGCTATAATATCTTGTTTA+AGG | 0.174105 | 5_4:-7345003 | Msa0834330:CDS |
| AGAAATGCAAAGAATTATTT+AGG | 0.235172 | 5_4:+7346078 | None:intergenic |
| TGCTCTAGAGCAACCTATTA+TGG | 0.246885 | 5_4:-7345930 | Msa0834330:CDS |
| CTTGGATTTGCATAACAATC+TGG | 0.272291 | 5_4:+7345903 | None:intergenic |
| ACAATCTGGGCTACCATAAT+AGG | 0.288543 | 5_4:+7345917 | None:intergenic |
| GCTTGTGGCTATGGTGATTA+TGG | 0.309081 | 5_4:-7345496 | Msa0834330:CDS |
| TACGCATTGGCCTCCATTCT+TGG | 0.310288 | 5_4:+7344793 | None:intergenic |
| ATCTCTAGTGATTGGGAAGC+TGG | 0.319429 | 5_4:-7344660 | Msa0834330:CDS |
| TGACACAAACAAAACCAATT+TGG | 0.321541 | 5_4:+7345997 | None:intergenic |
| GTGGTAGTGCTGGGCTGTAT+TGG | 0.321854 | 5_4:-7344701 | Msa0834330:CDS |
| CCATTCTCGTCACACAATTC+TGG | 0.326522 | 5_4:+7345188 | None:intergenic |
| AAAGTACTTATAGATAGATT+TGG | 0.328977 | 5_4:-7344597 | Msa0834330:three_prime_UTR |
| TGGTAGTGCTGGGCTGTATT+GGG | 0.329472 | 5_4:-7344700 | Msa0834330:CDS |
| CCCCGTGGCTATTCAAATTT+GGG | 0.333249 | 5_4:-7345107 | Msa0834330:CDS |
| AGGCCAATGCGTAGGGCATT+TGG | 0.356145 | 5_4:-7344783 | Msa0834330:CDS |
| CCGATTTCGGTGTGGGAGAT+AGG | 0.376563 | 5_4:-7345148 | Msa0834330:CDS |
| CCTATCTCCCACACCGAAAT+CGG | 0.384864 | 5_4:+7345148 | None:intergenic |
| AGACTGTTATCTCTAGTGAT+TGG | 0.400920 | 5_4:-7344668 | Msa0834330:CDS |
| GCCATTCTTATTCTCTATGT+TGG | 0.402224 | 5_4:-7344948 | Msa0834330:CDS |
| CTCCAAGTGAGTGGTAGTGC+TGG | 0.409157 | 5_4:-7344711 | Msa0834330:CDS |
| TTAGAGGGAGCTTGTGGCTA+TGG | 0.433052 | 5_4:-7345505 | Msa0834330:intron |
| GACTGTTATCTCTAGTGATT+GGG | 0.436426 | 5_4:-7344667 | Msa0834330:CDS |
| CAATTTGTCATTGAACATGA+TGG | 0.445795 | 5_4:-7346036 | Msa0834330:exon |
| AACTTGATCTCACCTCTTGG+AGG | 0.448456 | 5_4:+7344738 | None:intergenic |
| AACAGGAAGATTGCCAAGAA+TGG | 0.466268 | 5_4:-7344806 | Msa0834330:intron |
| ATTCTTATTCTCTATGTTGG+TGG | 0.472042 | 5_4:-7344945 | Msa0834330:CDS |
| TCTCTAGTGATTGGGAAGCT+GGG | 0.472781 | 5_4:-7344659 | Msa0834330:CDS |
| TATGTGGTGGTGACCGATTT+CGG | 0.479504 | 5_4:-7345161 | Msa0834330:CDS |
| CTCAACTTGATCTCACCTCT+TGG | 0.495730 | 5_4:+7344735 | None:intergenic |
| TTGGATTTGCATAACAATCT+GGG | 0.496289 | 5_4:+7345904 | None:intergenic |
| CCAGAATTGTGTGACGAGAA+TGG | 0.501363 | 5_4:-7345188 | Msa0834330:CDS |
| ATCACTAGAGATAACAGTCT+TGG | 0.514327 | 5_4:+7344671 | None:intergenic |
| CTCTAGTGATTGGGAAGCTG+GGG | 0.520412 | 5_4:-7344658 | Msa0834330:CDS |
| TTATAGCCATTGTATTTGCA+AGG | 0.532628 | 5_4:+7345017 | None:intergenic |
| GCCCAGCACTACCACTCACT+TGG | 0.534848 | 5_4:+7344709 | None:intergenic |
| ACTTGATCTCACCTCTTGGA+GGG | 0.535508 | 5_4:+7344739 | None:intergenic |
| ACCAACATAGAGAATAAGAA+TGG | 0.537864 | 5_4:+7344947 | None:intergenic |
| GCCCAAATTTGAATAGCCAC+GGG | 0.544992 | 5_4:+7345106 | None:intergenic |
| TGCCCAAATTTGAATAGCCA+CGG | 0.546821 | 5_4:+7345105 | None:intergenic |
| GTTCCAAATGCCCTACGCAT+TGG | 0.550110 | 5_4:+7344780 | None:intergenic |
| TCCAAGTGAGTGGTAGTGCT+GGG | 0.552324 | 5_4:-7344710 | Msa0834330:CDS |
| AAGAATGGAGGCCAATGCGT+AGG | 0.554025 | 5_4:-7344791 | Msa0834330:CDS |
| TCTTGAGAGGAACACAAGAC+AGG | 0.557963 | 5_4:+7345963 | None:intergenic |
| AAATTGTCAAAGCACAAAAG+AGG | 0.559026 | 5_4:+7346053 | None:intergenic |
| TATAGCCATTGTATTTGCAA+GGG | 0.561411 | 5_4:+7345018 | None:intergenic |
| GTGGTGACCGATTTCGGTGT+GGG | 0.566642 | 5_4:-7345155 | Msa0834330:CDS |
| AACTGCTGTTCAGTTGTGGC+AGG | 0.569473 | 5_4:-7344910 | Msa0834330:intron |
| ATAAGAATGGCTAAGTAGTG+AGG | 0.575706 | 5_4:+7344960 | None:intergenic |
| AGAATGGAGGCCAATGCGTA+GGG | 0.588746 | 5_4:-7344790 | Msa0834330:CDS |
| CAGAAGCCAAACACAAGTAG+AGG | 0.606030 | 5_4:+7344492 | None:intergenic |
| TAGTGCTGGGCTGTATTGGG+TGG | 0.610771 | 5_4:-7344697 | Msa0834330:CDS |
| AGGAAGATTGCCAAGAATGG+AGG | 0.614849 | 5_4:-7344803 | Msa0834330:CDS |
| TGACGAGAATGGAGCATATG+TGG | 0.619740 | 5_4:-7345177 | Msa0834330:CDS |
| AGAATCCCTTGCAAATACAA+TGG | 0.620915 | 5_4:-7345023 | Msa0834330:CDS |
| GCAAACAAAAGAGTCTTGAG+AGG | 0.624968 | 5_4:+7345950 | None:intergenic |
| TTTATAGAATGACACAGACC+AGG | 0.643770 | 5_4:+7344548 | None:intergenic |
| ATGTAACTGCTGTTCAGTTG+TGG | 0.651186 | 5_4:-7344914 | Msa0834330:CDS |
| GGTGGTGACCGATTTCGGTG+TGG | 0.653687 | 5_4:-7345156 | Msa0834330:CDS |
| AAGTTGAGGCTCCAAGTGAG+TGG | 0.655665 | 5_4:-7344720 | Msa0834330:CDS |
| GACTTCATCATGAGTCCCCG+TGG | 0.688519 | 5_4:-7345122 | Msa0834330:CDS |
| GATGCAGAGAACCCTCCAAG+AGG | 0.690257 | 5_4:-7344750 | Msa0834330:CDS |
| CCCAAATTTGAATAGCCACG+GGG | 0.693150 | 5_4:+7345107 | None:intergenic |
| CAAGAGGTGAGATCAAGTTG+AGG | 0.697595 | 5_4:-7344734 | Msa0834330:CDS |
| CGAGAATGGAGCATATGTGG+TGG | 0.757236 | 5_4:-7345174 | Msa0834330:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAAGTAATATATATTATAA+AGG | - | chr5_4:7345323-7345342 | Msa0834330:intron | 10.0% |
| !! | ATAATAAATAATGATGAAAT+AGG | - | chr5_4:7345390-7345409 | Msa0834330:intron | 10.0% |
| !! | TGAAGTAATATATATTATAA+AGG | - | chr5_4:7345323-7345342 | Msa0834330:intron | 10.0% |
| !! | ATAATAAATAATGATGAAAT+AGG | - | chr5_4:7345390-7345409 | Msa0834330:intron | 10.0% |
| !!! | ATTCAATTTTTATCTCAAAT+TGG | - | chr5_4:7344888-7344907 | Msa0834330:intron | 15.0% |
| !! | TATTAACAATCTCAAAATAA+AGG | + | chr5_4:7345735-7345754 | None:intergenic | 15.0% |
| !! | TAAAAATAACTATGAATAAG+AGG | + | chr5_4:7344499-7344518 | None:intergenic | 15.0% |
| !!! | ATTCAATTTTTATCTCAAAT+TGG | - | chr5_4:7344888-7344907 | Msa0834330:intron | 15.0% |
| !! | TATTAACAATCTCAAAATAA+AGG | + | chr5_4:7345735-7345754 | None:intergenic | 15.0% |
| !! | AGAAATGCAAAGAATTATTT+AGG | + | chr5_4:7344540-7344559 | None:intergenic | 20.0% |
| !! | CACATTTATAAAAATTGACA+GGG | + | chr5_4:7344927-7344946 | None:intergenic | 20.0% |
| !! | ACACATTTATAAAAATTGAC+AGG | + | chr5_4:7344928-7344947 | None:intergenic | 20.0% |
| !! | TACATTTCTTGAAATTGAAT+TGG | - | chr5_4:7345765-7345784 | Msa0834330:intron | 20.0% |
| !! | ACATTTCTTGAAATTGAATT+GGG | - | chr5_4:7345766-7345785 | Msa0834330:intron | 20.0% |
| !!! | AAAGTACTTATAGATAGATT+TGG | - | chr5_4:7346018-7346037 | Msa0834330:CDS | 20.0% |
| !! | AGAAATGCAAAGAATTATTT+AGG | + | chr5_4:7344540-7344559 | None:intergenic | 20.0% |
| !! | CACATTTATAAAAATTGACA+GGG | + | chr5_4:7344927-7344946 | None:intergenic | 20.0% |
| !! | ACACATTTATAAAAATTGAC+AGG | + | chr5_4:7344928-7344947 | None:intergenic | 20.0% |
| !! | TACATTTCTTGAAATTGAAT+TGG | - | chr5_4:7345765-7345784 | Msa0834330:intron | 20.0% |
| !! | ACATTTCTTGAAATTGAATT+GGG | - | chr5_4:7345766-7345785 | Msa0834330:intron | 20.0% |
| !!! | AAAGTACTTATAGATAGATT+TGG | - | chr5_4:7346018-7346037 | Msa0834330:CDS | 20.0% |
| !! | CATTGAATCGGTTTATAAAT+CGG | + | chr5_4:7344995-7345014 | None:intergenic | 25.0% |
| !!! | CAGTATACAACATTTTTTTC+CGG | - | chr5_4:7345018-7345037 | Msa0834330:CDS | 25.0% |
| ! | CATAAAATACATAATCTGAG+TGG | - | chr5_4:7345074-7345093 | Msa0834330:CDS | 25.0% |
| !! | AACTAATTGTTAGTTGATGT+TGG | + | chr5_4:7345359-7345378 | None:intergenic | 25.0% |
| ! | AAATAATGATGAAATAGGTG+AGG | - | chr5_4:7345395-7345414 | Msa0834330:intron | 25.0% |
| ! | TATTCAAATTTGGGCAAAAA+TGG | - | chr5_4:7345517-7345536 | Msa0834330:intron | 25.0% |
| !! | TCTGCAGAACTTTTTAAATA+TGG | - | chr5_4:7345547-7345566 | Msa0834330:intron | 25.0% |
| !! | AGAACTTTTTAAATATGGTG+TGG | - | chr5_4:7345552-7345571 | Msa0834330:intron | 25.0% |
| !! | TGGCTATAATATCTTGTTTA+AGG | - | chr5_4:7345612-7345631 | Msa0834330:intron | 25.0% |
| !! | CATTGAATCGGTTTATAAAT+CGG | + | chr5_4:7344995-7345014 | None:intergenic | 25.0% |
| !!! | CAGTATACAACATTTTTTTC+CGG | - | chr5_4:7345018-7345037 | Msa0834330:CDS | 25.0% |
| ! | CATAAAATACATAATCTGAG+TGG | - | chr5_4:7345074-7345093 | Msa0834330:CDS | 25.0% |
| !! | AACTAATTGTTAGTTGATGT+TGG | + | chr5_4:7345359-7345378 | None:intergenic | 25.0% |
| ! | AAATAATGATGAAATAGGTG+AGG | - | chr5_4:7345395-7345414 | Msa0834330:intron | 25.0% |
| ! | TATTCAAATTTGGGCAAAAA+TGG | - | chr5_4:7345517-7345536 | Msa0834330:intron | 25.0% |
| !! | TCTGCAGAACTTTTTAAATA+TGG | - | chr5_4:7345547-7345566 | Msa0834330:intron | 25.0% |
| !! | AGAACTTTTTAAATATGGTG+TGG | - | chr5_4:7345552-7345571 | Msa0834330:intron | 25.0% |
| !! | TGGCTATAATATCTTGTTTA+AGG | - | chr5_4:7345612-7345631 | Msa0834330:intron | 25.0% |
| AAATTGTCAAAGCACAAAAG+AGG | + | chr5_4:7344565-7344584 | None:intergenic | 30.0% | |
| CAATTTGTCATTGAACATGA+TGG | - | chr5_4:7344579-7344598 | Msa0834330:three_prime_UTR | 30.0% | |
| !! | CCAATTTGGTGCTTAAAATT+AGG | + | chr5_4:7344607-7344626 | None:intergenic | 30.0% |
| ! | CCTAATTTTAAGCACCAAAT+TGG | - | chr5_4:7344604-7344623 | Msa0834330:three_prime_UTR | 30.0% |
| TGACACAAACAAAACCAATT+TGG | + | chr5_4:7344621-7344640 | None:intergenic | 30.0% | |
| TTGGATTTGCATAACAATCT+GGG | + | chr5_4:7344714-7344733 | None:intergenic | 30.0% | |
| ATTAGTAGAAGACACTTACT+TGG | + | chr5_4:7344733-7344752 | None:intergenic | 30.0% | |
| TGTATACTGTCTCATTGAAT+CGG | + | chr5_4:7345007-7345026 | None:intergenic | 30.0% | |
| ! | ACTTTTTAAATATGGTGTGG+TGG | - | chr5_4:7345555-7345574 | Msa0834330:intron | 30.0% |
| TATAGCCATTGTATTTGCAA+GGG | + | chr5_4:7345600-7345619 | None:intergenic | 30.0% | |
| TTATAGCCATTGTATTTGCA+AGG | + | chr5_4:7345601-7345620 | None:intergenic | 30.0% | |
| ACCAACATAGAGAATAAGAA+TGG | + | chr5_4:7345671-7345690 | None:intergenic | 30.0% | |
| ATTCTTATTCTCTATGTTGG+TGG | - | chr5_4:7345670-7345689 | Msa0834330:intron | 30.0% | |
| TGAATTGGGTTTACTTGAAA+TGG | - | chr5_4:7345780-7345799 | Msa0834330:intron | 30.0% | |
| AAATTGTCAAAGCACAAAAG+AGG | + | chr5_4:7344565-7344584 | None:intergenic | 30.0% | |
| CAATTTGTCATTGAACATGA+TGG | - | chr5_4:7344579-7344598 | Msa0834330:three_prime_UTR | 30.0% | |
| !! | CCAATTTGGTGCTTAAAATT+AGG | + | chr5_4:7344607-7344626 | None:intergenic | 30.0% |
| ! | CCTAATTTTAAGCACCAAAT+TGG | - | chr5_4:7344604-7344623 | Msa0834330:three_prime_UTR | 30.0% |
| TGACACAAACAAAACCAATT+TGG | + | chr5_4:7344621-7344640 | None:intergenic | 30.0% | |
| TTGGATTTGCATAACAATCT+GGG | + | chr5_4:7344714-7344733 | None:intergenic | 30.0% | |
| ATTAGTAGAAGACACTTACT+TGG | + | chr5_4:7344733-7344752 | None:intergenic | 30.0% | |
| TGTATACTGTCTCATTGAAT+CGG | + | chr5_4:7345007-7345026 | None:intergenic | 30.0% | |
| ! | ACTTTTTAAATATGGTGTGG+TGG | - | chr5_4:7345555-7345574 | Msa0834330:intron | 30.0% |
| TATAGCCATTGTATTTGCAA+GGG | + | chr5_4:7345600-7345619 | None:intergenic | 30.0% | |
| TTATAGCCATTGTATTTGCA+AGG | + | chr5_4:7345601-7345620 | None:intergenic | 30.0% | |
| ACCAACATAGAGAATAAGAA+TGG | + | chr5_4:7345671-7345690 | None:intergenic | 30.0% | |
| ATTCTTATTCTCTATGTTGG+TGG | - | chr5_4:7345670-7345689 | Msa0834330:intron | 30.0% | |
| TGAATTGGGTTTACTTGAAA+TGG | - | chr5_4:7345780-7345799 | Msa0834330:intron | 30.0% | |
| CTTGGATTTGCATAACAATC+TGG | + | chr5_4:7344715-7344734 | None:intergenic | 35.0% | |
| AAAAATTGACAGGGTTGAGT+AGG | + | chr5_4:7344918-7344937 | None:intergenic | 35.0% | |
| !!! | GAGTGTTGTGCACATTTTTT+AGG | - | chr5_4:7344951-7344970 | Msa0834330:CDS | 35.0% |
| ACCTAGACATTGCATTACTT+TGG | - | chr5_4:7345044-7345063 | Msa0834330:CDS | 35.0% | |
| !! | TGGCTATTAACCTGTTTTAG+AGG | - | chr5_4:7345094-7345113 | Msa0834330:CDS | 35.0% |
| !! | GGCTATTAACCTGTTTTAGA+GGG | - | chr5_4:7345095-7345114 | Msa0834330:CDS | 35.0% |
| TATGGACAGACAGTAAATGA+TGG | - | chr5_4:7345137-7345156 | Msa0834330:CDS | 35.0% | |
| AGAATCCCTTGCAAATACAA+TGG | - | chr5_4:7345592-7345611 | Msa0834330:intron | 35.0% | |
| ATAAGAATGGCTAAGTAGTG+AGG | + | chr5_4:7345658-7345677 | None:intergenic | 35.0% | |
| GCCATTCTTATTCTCTATGT+TGG | - | chr5_4:7345667-7345686 | Msa0834330:intron | 35.0% | |
| GGGTTTACTTGAAATGGTAA+TGG | - | chr5_4:7345786-7345805 | Msa0834330:intron | 35.0% | |
| !! | ACTTGAAATGGTAATGGAAC+AGG | - | chr5_4:7345792-7345811 | Msa0834330:intron | 35.0% |
| ATCACTAGAGATAACAGTCT+TGG | + | chr5_4:7345947-7345966 | None:intergenic | 35.0% | |
| AGACTGTTATCTCTAGTGAT+TGG | - | chr5_4:7345947-7345966 | Msa0834330:CDS | 35.0% | |
| GACTGTTATCTCTAGTGATT+GGG | - | chr5_4:7345948-7345967 | Msa0834330:CDS | 35.0% | |
| TTTATAGAATGACACAGACC+AGG | + | chr5_4:7346070-7346089 | None:intergenic | 35.0% | |
| ! | TTTTCTCCTCTACTTGTGTT+TGG | - | chr5_4:7346117-7346136 | Msa0834330:five_prime_UTR | 35.0% |
| CTTGGATTTGCATAACAATC+TGG | + | chr5_4:7344715-7344734 | None:intergenic | 35.0% | |
| AAAAATTGACAGGGTTGAGT+AGG | + | chr5_4:7344918-7344937 | None:intergenic | 35.0% | |
| !!! | GAGTGTTGTGCACATTTTTT+AGG | - | chr5_4:7344951-7344970 | Msa0834330:CDS | 35.0% |
| ACCTAGACATTGCATTACTT+TGG | - | chr5_4:7345044-7345063 | Msa0834330:CDS | 35.0% | |
| !! | TGGCTATTAACCTGTTTTAG+AGG | - | chr5_4:7345094-7345113 | Msa0834330:CDS | 35.0% |
| !! | GGCTATTAACCTGTTTTAGA+GGG | - | chr5_4:7345095-7345114 | Msa0834330:CDS | 35.0% |
| TATGGACAGACAGTAAATGA+TGG | - | chr5_4:7345137-7345156 | Msa0834330:CDS | 35.0% | |
| AGAATCCCTTGCAAATACAA+TGG | - | chr5_4:7345592-7345611 | Msa0834330:intron | 35.0% | |
| ATAAGAATGGCTAAGTAGTG+AGG | + | chr5_4:7345658-7345677 | None:intergenic | 35.0% | |
| GCCATTCTTATTCTCTATGT+TGG | - | chr5_4:7345667-7345686 | Msa0834330:intron | 35.0% | |
| GGGTTTACTTGAAATGGTAA+TGG | - | chr5_4:7345786-7345805 | Msa0834330:intron | 35.0% | |
| !! | ACTTGAAATGGTAATGGAAC+AGG | - | chr5_4:7345792-7345811 | Msa0834330:intron | 35.0% |
| ATCACTAGAGATAACAGTCT+TGG | + | chr5_4:7345947-7345966 | None:intergenic | 35.0% | |
| AGACTGTTATCTCTAGTGAT+TGG | - | chr5_4:7345947-7345966 | Msa0834330:CDS | 35.0% | |
| GACTGTTATCTCTAGTGATT+GGG | - | chr5_4:7345948-7345967 | Msa0834330:CDS | 35.0% | |
| TTTATAGAATGACACAGACC+AGG | + | chr5_4:7346070-7346089 | None:intergenic | 35.0% | |
| ! | TTTTCTCCTCTACTTGTGTT+TGG | - | chr5_4:7346117-7346136 | Msa0834330:five_prime_UTR | 35.0% |
| GCAAACAAAAGAGTCTTGAG+AGG | + | chr5_4:7344668-7344687 | None:intergenic | 40.0% | |
| !! | TGCTCTAGAGCAACCTATTA+TGG | - | chr5_4:7344685-7344704 | Msa0834330:CDS | 40.0% |
| ACAATCTGGGCTACCATAAT+AGG | + | chr5_4:7344701-7344720 | None:intergenic | 40.0% | |
| AATGCAATGTCTAGGTTCAC+CGG | + | chr5_4:7345040-7345059 | None:intergenic | 40.0% | |
| GCCAAAGTAATGCAATGTCT+AGG | + | chr5_4:7345048-7345067 | None:intergenic | 40.0% | |
| GTTTCTTCGCTATGGAAGAA+TGG | - | chr5_4:7345173-7345192 | Msa0834330:CDS | 40.0% | |
| TGCCCAAATTTGAATAGCCA+CGG | + | chr5_4:7345513-7345532 | None:intergenic | 40.0% | |
| ATGTAACTGCTGTTCAGTTG+TGG | - | chr5_4:7345701-7345720 | Msa0834330:intron | 40.0% | |
| AACAGGAAGATTGCCAAGAA+TGG | - | chr5_4:7345809-7345828 | Msa0834330:intron | 40.0% | |
| ! | GACTAGTGTTTTACTGTTCC+TGG | - | chr5_4:7346049-7346068 | Msa0834330:five_prime_UTR | 40.0% |
| GCAAACAAAAGAGTCTTGAG+AGG | + | chr5_4:7344668-7344687 | None:intergenic | 40.0% | |
| !! | TGCTCTAGAGCAACCTATTA+TGG | - | chr5_4:7344685-7344704 | Msa0834330:CDS | 40.0% |
| ACAATCTGGGCTACCATAAT+AGG | + | chr5_4:7344701-7344720 | None:intergenic | 40.0% | |
| AATGCAATGTCTAGGTTCAC+CGG | + | chr5_4:7345040-7345059 | None:intergenic | 40.0% | |
| GCCAAAGTAATGCAATGTCT+AGG | + | chr5_4:7345048-7345067 | None:intergenic | 40.0% | |
| GTTTCTTCGCTATGGAAGAA+TGG | - | chr5_4:7345173-7345192 | Msa0834330:CDS | 40.0% | |
| TGCCCAAATTTGAATAGCCA+CGG | + | chr5_4:7345513-7345532 | None:intergenic | 40.0% | |
| ATGTAACTGCTGTTCAGTTG+TGG | - | chr5_4:7345701-7345720 | Msa0834330:intron | 40.0% | |
| AACAGGAAGATTGCCAAGAA+TGG | - | chr5_4:7345809-7345828 | Msa0834330:intron | 40.0% | |
| ! | GACTAGTGTTTTACTGTTCC+TGG | - | chr5_4:7346049-7346068 | Msa0834330:five_prime_UTR | 40.0% |
| TCTTGAGAGGAACACAAGAC+AGG | + | chr5_4:7344655-7344674 | None:intergenic | 45.0% | |
| GCTTGTGGCTATGGTGATTA+TGG | - | chr5_4:7345119-7345138 | Msa0834330:CDS | 45.0% | |
| GTAAATGATGGCAATGTCGC+AGG | - | chr5_4:7345149-7345168 | Msa0834330:CDS | 45.0% | |
| TCGCTATGGAAGAATGGATC+TGG | - | chr5_4:7345179-7345198 | Msa0834330:CDS | 45.0% | |
| TGGAAGAATGGATCTGGTTG+TGG | - | chr5_4:7345185-7345204 | Msa0834330:CDS | 45.0% | |
| CCATTCTCGTCACACAATTC+TGG | + | chr5_4:7345430-7345449 | None:intergenic | 45.0% | |
| CCAGAATTGTGTGACGAGAA+TGG | - | chr5_4:7345427-7345446 | Msa0834330:intron | 45.0% | |
| TGACGAGAATGGAGCATATG+TGG | - | chr5_4:7345438-7345457 | Msa0834330:intron | 45.0% | |
| ! | TATGTGGTGGTGACCGATTT+CGG | - | chr5_4:7345454-7345473 | Msa0834330:intron | 45.0% |
| TCCCCGTGGCTATTCAAATT+TGG | - | chr5_4:7345507-7345526 | Msa0834330:intron | 45.0% | |
| CCCAAATTTGAATAGCCACG+GGG | + | chr5_4:7345511-7345530 | None:intergenic | 45.0% | |
| CCCCGTGGCTATTCAAATTT+GGG | - | chr5_4:7345508-7345527 | Msa0834330:intron | 45.0% | |
| GCCCAAATTTGAATAGCCAC+GGG | + | chr5_4:7345512-7345531 | None:intergenic | 45.0% | |
| ! | GAGGATTTTTGCTGCGTTCA+TGG | + | chr5_4:7345639-7345658 | None:intergenic | 45.0% |
| AGGAAGATTGCCAAGAATGG+AGG | - | chr5_4:7345812-7345831 | Msa0834330:intron | 45.0% | |
| ACTTGATCTCACCTCTTGGA+GGG | + | chr5_4:7345879-7345898 | None:intergenic | 45.0% | |
| AACTTGATCTCACCTCTTGG+AGG | + | chr5_4:7345880-7345899 | None:intergenic | 45.0% | |
| CTCAACTTGATCTCACCTCT+TGG | + | chr5_4:7345883-7345902 | None:intergenic | 45.0% | |
| ! | CAAGAGGTGAGATCAAGTTG+AGG | - | chr5_4:7345881-7345900 | Msa0834330:intron | 45.0% |
| ATCTCTAGTGATTGGGAAGC+TGG | - | chr5_4:7345955-7345974 | Msa0834330:CDS | 45.0% | |
| TCTCTAGTGATTGGGAAGCT+GGG | - | chr5_4:7345956-7345975 | Msa0834330:CDS | 45.0% | |
| TCTTGAGAGGAACACAAGAC+AGG | + | chr5_4:7344655-7344674 | None:intergenic | 45.0% | |
| GCTTGTGGCTATGGTGATTA+TGG | - | chr5_4:7345119-7345138 | Msa0834330:CDS | 45.0% | |
| GTAAATGATGGCAATGTCGC+AGG | - | chr5_4:7345149-7345168 | Msa0834330:CDS | 45.0% | |
| TCGCTATGGAAGAATGGATC+TGG | - | chr5_4:7345179-7345198 | Msa0834330:CDS | 45.0% | |
| TGGAAGAATGGATCTGGTTG+TGG | - | chr5_4:7345185-7345204 | Msa0834330:CDS | 45.0% | |
| CCATTCTCGTCACACAATTC+TGG | + | chr5_4:7345430-7345449 | None:intergenic | 45.0% | |
| CCAGAATTGTGTGACGAGAA+TGG | - | chr5_4:7345427-7345446 | Msa0834330:intron | 45.0% | |
| TGACGAGAATGGAGCATATG+TGG | - | chr5_4:7345438-7345457 | Msa0834330:intron | 45.0% | |
| ! | TATGTGGTGGTGACCGATTT+CGG | - | chr5_4:7345454-7345473 | Msa0834330:intron | 45.0% |
| TCCCCGTGGCTATTCAAATT+TGG | - | chr5_4:7345507-7345526 | Msa0834330:intron | 45.0% | |
| CCCAAATTTGAATAGCCACG+GGG | + | chr5_4:7345511-7345530 | None:intergenic | 45.0% | |
| CCCCGTGGCTATTCAAATTT+GGG | - | chr5_4:7345508-7345527 | Msa0834330:intron | 45.0% | |
| GCCCAAATTTGAATAGCCAC+GGG | + | chr5_4:7345512-7345531 | None:intergenic | 45.0% | |
| ! | GAGGATTTTTGCTGCGTTCA+TGG | + | chr5_4:7345639-7345658 | None:intergenic | 45.0% |
| AGGAAGATTGCCAAGAATGG+AGG | - | chr5_4:7345812-7345831 | Msa0834330:intron | 45.0% | |
| ACTTGATCTCACCTCTTGGA+GGG | + | chr5_4:7345879-7345898 | None:intergenic | 45.0% | |
| AACTTGATCTCACCTCTTGG+AGG | + | chr5_4:7345880-7345899 | None:intergenic | 45.0% | |
| CTCAACTTGATCTCACCTCT+TGG | + | chr5_4:7345883-7345902 | None:intergenic | 45.0% | |
| ! | CAAGAGGTGAGATCAAGTTG+AGG | - | chr5_4:7345881-7345900 | Msa0834330:intron | 45.0% |
| ATCTCTAGTGATTGGGAAGC+TGG | - | chr5_4:7345955-7345974 | Msa0834330:CDS | 45.0% | |
| TCTCTAGTGATTGGGAAGCT+GGG | - | chr5_4:7345956-7345975 | Msa0834330:CDS | 45.0% | |
| !! | CCACAAGCTCCCTCTAAAAC+AGG | + | chr5_4:7345107-7345126 | None:intergenic | 50.0% |
| !!! | CCTGTTTTAGAGGGAGCTTG+TGG | - | chr5_4:7345104-7345123 | Msa0834330:CDS | 50.0% |
| TTAGAGGGAGCTTGTGGCTA+TGG | - | chr5_4:7345110-7345129 | Msa0834330:CDS | 50.0% | |
| CGAGAATGGAGCATATGTGG+TGG | - | chr5_4:7345441-7345460 | Msa0834330:intron | 50.0% | |
| CCTATCTCCCACACCGAAAT+CGG | + | chr5_4:7345470-7345489 | None:intergenic | 50.0% | |
| AACTGCTGTTCAGTTGTGGC+AGG | - | chr5_4:7345705-7345724 | Msa0834330:intron | 50.0% | |
| ! | TACGCATTGGCCTCCATTCT+TGG | + | chr5_4:7345825-7345844 | None:intergenic | 50.0% |
| AAGAATGGAGGCCAATGCGT+AGG | - | chr5_4:7345824-7345843 | Msa0834330:intron | 50.0% | |
| AGAATGGAGGCCAATGCGTA+GGG | - | chr5_4:7345825-7345844 | Msa0834330:intron | 50.0% | |
| GTTCCAAATGCCCTACGCAT+TGG | + | chr5_4:7345838-7345857 | None:intergenic | 50.0% | |
| AAGTTGAGGCTCCAAGTGAG+TGG | - | chr5_4:7345895-7345914 | Msa0834330:intron | 50.0% | |
| ! | TCCAAGTGAGTGGTAGTGCT+GGG | - | chr5_4:7345905-7345924 | Msa0834330:CDS | 50.0% |
| ! | TGGTAGTGCTGGGCTGTATT+GGG | - | chr5_4:7345915-7345934 | Msa0834330:CDS | 50.0% |
| CTCTAGTGATTGGGAAGCTG+GGG | - | chr5_4:7345957-7345976 | Msa0834330:CDS | 50.0% | |
| !! | CCACAAGCTCCCTCTAAAAC+AGG | + | chr5_4:7345107-7345126 | None:intergenic | 50.0% |
| !!! | CCTGTTTTAGAGGGAGCTTG+TGG | - | chr5_4:7345104-7345123 | Msa0834330:CDS | 50.0% |
| TTAGAGGGAGCTTGTGGCTA+TGG | - | chr5_4:7345110-7345129 | Msa0834330:CDS | 50.0% | |
| CGAGAATGGAGCATATGTGG+TGG | - | chr5_4:7345441-7345460 | Msa0834330:intron | 50.0% | |
| CCTATCTCCCACACCGAAAT+CGG | + | chr5_4:7345470-7345489 | None:intergenic | 50.0% | |
| AACTGCTGTTCAGTTGTGGC+AGG | - | chr5_4:7345705-7345724 | Msa0834330:intron | 50.0% | |
| ! | TACGCATTGGCCTCCATTCT+TGG | + | chr5_4:7345825-7345844 | None:intergenic | 50.0% |
| AAGAATGGAGGCCAATGCGT+AGG | - | chr5_4:7345824-7345843 | Msa0834330:intron | 50.0% | |
| AGAATGGAGGCCAATGCGTA+GGG | - | chr5_4:7345825-7345844 | Msa0834330:intron | 50.0% | |
| GTTCCAAATGCCCTACGCAT+TGG | + | chr5_4:7345838-7345857 | None:intergenic | 50.0% | |
| AAGTTGAGGCTCCAAGTGAG+TGG | - | chr5_4:7345895-7345914 | Msa0834330:intron | 50.0% | |
| ! | TCCAAGTGAGTGGTAGTGCT+GGG | - | chr5_4:7345905-7345924 | Msa0834330:CDS | 50.0% |
| ! | TGGTAGTGCTGGGCTGTATT+GGG | - | chr5_4:7345915-7345934 | Msa0834330:CDS | 50.0% |
| CTCTAGTGATTGGGAAGCTG+GGG | - | chr5_4:7345957-7345976 | Msa0834330:CDS | 50.0% | |
| TCGCAGGCGTTTCTTCGCTA+TGG | - | chr5_4:7345165-7345184 | Msa0834330:CDS | 55.0% | |
| ! | GTGGTGACCGATTTCGGTGT+GGG | - | chr5_4:7345460-7345479 | Msa0834330:intron | 55.0% |
| ! | CCGATTTCGGTGTGGGAGAT+AGG | - | chr5_4:7345467-7345486 | Msa0834330:intron | 55.0% |
| GACTTCATCATGAGTCCCCG+TGG | - | chr5_4:7345493-7345512 | Msa0834330:CDS | 55.0% | |
| ! | AGGCCAATGCGTAGGGCATT+TGG | - | chr5_4:7345832-7345851 | Msa0834330:intron | 55.0% |
| GATGCAGAGAACCCTCCAAG+AGG | - | chr5_4:7345865-7345884 | Msa0834330:intron | 55.0% | |
| ! | CTCCAAGTGAGTGGTAGTGC+TGG | - | chr5_4:7345904-7345923 | Msa0834330:CDS | 55.0% |
| ! | GTGGTAGTGCTGGGCTGTAT+TGG | - | chr5_4:7345914-7345933 | Msa0834330:CDS | 55.0% |
| ! | TAGTGCTGGGCTGTATTGGG+TGG | - | chr5_4:7345918-7345937 | Msa0834330:CDS | 55.0% |
| TCGCAGGCGTTTCTTCGCTA+TGG | - | chr5_4:7345165-7345184 | Msa0834330:CDS | 55.0% | |
| ! | GTGGTGACCGATTTCGGTGT+GGG | - | chr5_4:7345460-7345479 | Msa0834330:intron | 55.0% |
| ! | CCGATTTCGGTGTGGGAGAT+AGG | - | chr5_4:7345467-7345486 | Msa0834330:intron | 55.0% |
| GACTTCATCATGAGTCCCCG+TGG | - | chr5_4:7345493-7345512 | Msa0834330:CDS | 55.0% | |
| ! | AGGCCAATGCGTAGGGCATT+TGG | - | chr5_4:7345832-7345851 | Msa0834330:intron | 55.0% |
| GATGCAGAGAACCCTCCAAG+AGG | - | chr5_4:7345865-7345884 | Msa0834330:intron | 55.0% | |
| ! | CTCCAAGTGAGTGGTAGTGC+TGG | - | chr5_4:7345904-7345923 | Msa0834330:CDS | 55.0% |
| ! | GTGGTAGTGCTGGGCTGTAT+TGG | - | chr5_4:7345914-7345933 | Msa0834330:CDS | 55.0% |
| ! | TAGTGCTGGGCTGTATTGGG+TGG | - | chr5_4:7345918-7345937 | Msa0834330:CDS | 55.0% |
| ! | GGTGGTGACCGATTTCGGTG+TGG | - | chr5_4:7345459-7345478 | Msa0834330:intron | 60.0% |
| GCCCAGCACTACCACTCACT+TGG | + | chr5_4:7345909-7345928 | None:intergenic | 60.0% | |
| ! | GGTGGTGACCGATTTCGGTG+TGG | - | chr5_4:7345459-7345478 | Msa0834330:intron | 60.0% |
| GCCCAGCACTACCACTCACT+TGG | + | chr5_4:7345909-7345928 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 7344497 | 7346140 | 7344497 | ID=Msa0834330;Name=Msa0834330 |
| chr5_4 | mRNA | 7344497 | 7346140 | 7344497 | ID=Msa0834330-mRNA-1;Parent=Msa0834330;Name=Msa0834330-mRNA-1;_AED=0.09;_eAED=0.09;_QI=98|0.66|0.75|1|0.33|0.75|4|129|228 |
| chr5_4 | exon | 7344497 | 7344823 | 7344497 | ID=Msa0834330-mRNA-1:exon:3297;Parent=Msa0834330-mRNA-1 |
| chr5_4 | exon | 7344911 | 7345225 | 7344911 | ID=Msa0834330-mRNA-1:exon:3296;Parent=Msa0834330-mRNA-1 |
| chr5_4 | exon | 7345489 | 7345523 | 7345489 | ID=Msa0834330-mRNA-1:exon:3295;Parent=Msa0834330-mRNA-1 |
| chr5_4 | exon | 7345904 | 7346140 | 7345904 | ID=Msa0834330-mRNA-1:exon:3294;Parent=Msa0834330-mRNA-1 |
| chr5_4 | five_prime_UTR | 7346043 | 7346140 | 7346043 | ID=Msa0834330-mRNA-1:five_prime_utr;Parent=Msa0834330-mRNA-1 |
| chr5_4 | CDS | 7345904 | 7346042 | 7345904 | ID=Msa0834330-mRNA-1:cds;Parent=Msa0834330-mRNA-1 |
| chr5_4 | CDS | 7345489 | 7345523 | 7345489 | ID=Msa0834330-mRNA-1:cds;Parent=Msa0834330-mRNA-1 |
| chr5_4 | CDS | 7344911 | 7345225 | 7344911 | ID=Msa0834330-mRNA-1:cds;Parent=Msa0834330-mRNA-1 |
| chr5_4 | CDS | 7344626 | 7344823 | 7344626 | ID=Msa0834330-mRNA-1:cds;Parent=Msa0834330-mRNA-1 |
| chr5_4 | three_prime_UTR | 7344497 | 7344625 | 7344497 | ID=Msa0834330-mRNA-1:three_prime_utr;Parent=Msa0834330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
