AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1251230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1251230 MtrunA17_Chr8g0366351 96.774 279 9 0 17 295 1 279 0.0 539
Msa1251230 MtrunA17_Chr5g0410831 77.660 282 60 1 17 295 1 282 4.73e-149 419
Msa1251230 MtrunA17_Chr1g0161591 56.202 258 101 3 19 269 31 283 3.53e-95 283
Msa1251230 MtrunA17_Chr8g0392141 50.877 285 130 2 4 288 16 290 1.53e-93 279
Msa1251230 MtrunA17_Chr5g0410821 77.778 153 34 0 129 281 1 153 8.27e-76 228
Msa1251230 MtrunA17_Chr7g0253621 50.000 250 107 3 17 250 1 248 9.47e-75 229
Msa1251230 MtrunA17_Chr5g0416421 38.750 240 128 4 22 246 10 245 1.76e-46 156
Msa1251230 MtrunA17_Chr7g0217131 32.283 254 134 5 21 245 7 251 3.03e-31 117
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1251230 AT4G17720.1 67.910 268 83 2 17 281 1 268 2.05e-122 353
Msa1251230 AT5G46870.2 61.429 280 99 3 17 287 1 280 5.31e-110 321
Msa1251230 AT5G46870.1 61.429 280 99 3 17 287 1 280 5.31e-110 321
Msa1251230 AT5G16840.2 65.106 235 75 4 18 252 4 231 4.72e-102 299
Msa1251230 AT5G16840.1 65.106 235 74 5 18 252 4 230 2.18e-100 295
Msa1251230 AT5G16840.3 64.407 236 76 5 17 252 1 228 8.69e-100 293
Msa1251230 AT1G67950.3 52.766 235 101 2 19 253 28 252 1.30e-79 243
Msa1251230 AT1G67950.2 52.766 235 100 3 19 253 29 252 4.84e-78 239
Msa1251230 AT1G67950.1 52.766 235 100 3 19 253 28 251 5.58e-78 239
Msa1251230 AT5G32450.1 50.407 246 107 2 20 250 5 250 2.34e-74 229
Msa1251230 AT1G67950.4 49.754 203 91 3 51 253 1 192 1.01e-59 190
Msa1251230 AT1G14340.1 36.441 236 135 3 22 246 9 240 1.40e-40 141
Msa1251230 AT3G01210.2 32.520 246 132 5 23 244 9 244 1.46e-29 113
Msa1251230 AT3G01210.1 32.520 246 132 5 23 244 9 244 1.46e-29 113

Find 90 sgRNAs with CRISPR-Local

Find 384 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACTTGTTGCTGCGGCTTT+TGG 0.121118 8_2:-47022725 None:intergenic
CTTGCGAAGGGATTTATCTT+AGG 0.222166 8_2:+47022293 Msa1251230:CDS
AGAAGTGGATCAGAAGTTTC+AGG 0.297615 8_2:+47022463 Msa1251230:CDS
AAGCGTAACGGCGTCGAAAC+TGG 0.306350 8_2:-47017611 None:intergenic
CAAACTTCCACCTGCTGCTT+TGG 0.312762 8_2:+47021912 Msa1251230:CDS
AATTGCCTTTGTTACTTTCA+AGG 0.314569 8_2:+47019094 Msa1251230:CDS
AGCAGCTGCAAATGCTGATT+TGG 0.315915 8_2:-47022498 None:intergenic
AAGCATATCATTTCCAACTT+TGG 0.355824 8_2:-47022931 None:intergenic
GTGGAAAATGAAGGATTATC+AGG 0.361604 8_2:+47023051 Msa1251230:three_prime_UTR
ACTGGTACTACCTGGGTAAC+TGG 0.368921 8_2:+47022575 Msa1251230:CDS
AATTTGCAGGAGTTTCAAAA+AGG 0.375052 8_2:-47022811 None:intergenic
AGAAACTGAATTTCCAAAGT+TGG 0.404196 8_2:+47022918 Msa1251230:three_prime_UTR
AAAAGTCGGTAATGTTTCCT+TGG 0.410188 8_2:+47018873 Msa1251230:CDS
AGTAAGGTTGCTAAGGCAGC+TGG 0.411693 8_2:+47022605 Msa1251230:CDS
AAAATGAAAAGAACTCCTTT+AGG 0.412585 8_2:-47018912 None:intergenic
TTGCGAAGGGATTTATCTTA+GGG 0.414214 8_2:+47022294 Msa1251230:CDS
CCGAGGCTGTTGAACTCAAC+TGG 0.416921 8_2:-47022358 None:intergenic
CTCACACTGAAACAATTTGC+AGG 0.422823 8_2:-47022824 None:intergenic
TTGAATATGTTGAAATGAAA+AGG 0.433319 8_2:+47018944 Msa1251230:CDS
TTCCAAGCCTACACCTGCTC+AGG 0.433849 8_2:+47022757 Msa1251230:CDS
GCAGGTGGAAGTTTGTAATC+TGG 0.442443 8_2:-47021904 None:intergenic
CCAGTATGCGCAGGTCCTTT+CGG 0.448214 8_2:+47022697 Msa1251230:CDS
GACTATCGTCGTGGTGGTGG+TGG 0.450512 8_2:-47017479 None:intergenic
TTTGACTTTGAAACGCGTAC+TGG 0.459422 8_2:-47017523 None:intergenic
AAAGTCGGTAATGTTTCCTT+GGG 0.468203 8_2:+47018874 Msa1251230:CDS
GTGGTGCTGACTCTGCTTTA+CGG 0.473735 8_2:+47022243 Msa1251230:CDS
GCTAAGGCAGCTGGGGATGT+AGG 0.476446 8_2:+47022614 Msa1251230:CDS
TACACAAGGGTGGAAAATGA+AGG 0.479815 8_2:+47023042 Msa1251230:three_prime_UTR
CCGAAAGGACCTGCGCATAC+TGG 0.482179 8_2:-47022697 None:intergenic
TTTGTCAGTTAACATAACTC+TGG 0.492790 8_2:+47021879 Msa1251230:CDS
CGATAGTAGTACTGCCGTCT+CGG 0.498280 8_2:-47019129 None:intergenic
ACCCTGAGCAGGTGTAGGCT+TGG 0.499327 8_2:-47022759 None:intergenic
ACAGATGATGCCAAAGCAGC+AGG 0.499671 8_2:-47021922 None:intergenic
ACAGAAAACAAAAGAGAAAG+TGG 0.508009 8_2:+47022637 Msa1251230:CDS
GCCGCTGAGGGTAAAACTCC+TGG 0.513612 8_2:+47022221 Msa1251230:CDS
CAAAGGATCAAACCCTGAGC+AGG 0.517360 8_2:-47022770 None:intergenic
GGGAGTGTATGATGCAGAGA+TGG 0.521358 8_2:+47018789 Msa1251230:exon
ATATACTCACTGGTACTACC+TGG 0.533676 8_2:+47022567 Msa1251230:CDS
GAACAGAAAGTCAGTACCGC+AGG 0.537626 8_2:+47022521 Msa1251230:CDS
TTCGACTATCGTCGTGGTGG+TGG 0.541199 8_2:-47017482 None:intergenic
TTTACGGAAGGCAGAGGATG+TGG 0.541227 8_2:+47022259 Msa1251230:CDS
AGCATCTGAACAAGACCTAA+AGG 0.544372 8_2:+47018897 Msa1251230:CDS
GAAAGTGGAAAATGCAGAAG+TGG 0.544685 8_2:+47022652 Msa1251230:CDS
GTAAGGTTGCTAAGGCAGCT+GGG 0.546936 8_2:+47022606 Msa1251230:CDS
GTCTTGTTCAGATGCTCCCA+AGG 0.552262 8_2:-47018890 None:intergenic
TTACGCTTCTTCTGATATGT+CGG 0.553543 8_2:+47017626 Msa1251230:five_prime_UTR
CTCTGCTTTACGGAAGGCAG+AGG 0.563214 8_2:+47022253 Msa1251230:CDS
TCCAAGCCTACACCTGCTCA+GGG 0.564645 8_2:+47022758 Msa1251230:CDS
CCAGTTGAGTTCAACAGCCT+CGG 0.565333 8_2:+47022358 Msa1251230:CDS
AAATCCCTTCGCAAGCATGC+TGG 0.567408 8_2:-47022285 None:intergenic
CAGGTCAAAACTATAAAAGT+CGG 0.570204 8_2:+47018859 Msa1251230:CDS
GATGCTGTGAACAAAGCAAA+GGG 0.570764 8_2:+47022320 Msa1251230:CDS
GAGTGGTAGAGTTAAAGAAG+TGG 0.581041 8_2:+47022448 Msa1251230:CDS
AAGAATCGCTATATACTCAC+TGG 0.582491 8_2:+47022557 Msa1251230:CDS
AAAGCAGAGTCAGCACCACC+AGG 0.583320 8_2:-47022239 None:intergenic
GGATCCACAAGGTGCCGAGA+CGG 0.588318 8_2:+47019115 Msa1251230:CDS
TGCTGACTCTGCTTTACGGA+AGG 0.591242 8_2:+47022247 Msa1251230:CDS
GTCACCAGCATGCTTGCGAA+GGG 0.591713 8_2:+47022281 Msa1251230:CDS
AGATGCTGTGAACAAAGCAA+AGG 0.591752 8_2:+47022319 Msa1251230:CDS
ACTGCCGTCTCGGCACCTTG+TGG 0.593659 8_2:-47019119 None:intergenic
GGAGTGTATGATGCAGAGAT+GGG 0.598932 8_2:+47018790 Msa1251230:exon
AGTTGAAGACCAGTATGCGC+AGG 0.604810 8_2:+47022688 Msa1251230:CDS
TGGATCCTTGAAAGTAACAA+AGG 0.609650 8_2:-47019099 None:intergenic
GCAGAGATGGGTTCTCCACA+AGG 0.610522 8_2:+47018802 Msa1251230:exon
AGTGTTAGATATCAGACCAC+GGG 0.611841 8_2:+47018769 Msa1251230:five_prime_UTR
ATGTACAAGAAGTAAATCAA+AGG 0.612134 8_2:-47022787 None:intergenic
CTTAGTGAGAAATTAACTGC+TGG 0.614592 8_2:+47022413 Msa1251230:CDS
AACTGGGGTGTGTGTTTGAG+AGG 0.619779 8_2:-47017594 None:intergenic
ACTAAAAGCACCAGTTACCC+AGG 0.621013 8_2:-47022585 None:intergenic
TATACTCACTGGTACTACCT+GGG 0.629105 8_2:+47022568 Msa1251230:CDS
GATGATGCCAAAGCAGCAGG+TGG 0.631195 8_2:-47021919 None:intergenic
TAAGGTTGCTAAGGCAGCTG+GGG 0.631391 8_2:+47022607 Msa1251230:CDS
CTCTGCATCATACACTCCCG+TGG 0.634900 8_2:-47018785 None:intergenic
GTGCAGTTCACTTGTTGCTG+CGG 0.638692 8_2:-47022732 None:intergenic
CGAGACGGCAGTACTACTAT+CGG 0.643990 8_2:+47019130 Msa1251230:CDS
ATCAAACCCTGAGCAGGTGT+AGG 0.644936 8_2:-47022764 None:intergenic
ACTGAACGTTTAGAACCTTG+TGG 0.645991 8_2:-47018817 None:intergenic
GTTTGAGAGGATGAAGAAAA+CGG 0.647479 8_2:-47017581 None:intergenic
GTTACTTTCAAGGATCCACA+AGG 0.648181 8_2:+47019104 Msa1251230:CDS
GCGTAACGGCGTCGAAACTG+GGG 0.651779 8_2:-47017609 None:intergenic
ACATATCAGAAGAAGCGTAA+CGG 0.662837 8_2:-47017623 None:intergenic
AACAGAAAGTCAGTACCGCA+GGG 0.666312 8_2:+47022522 Msa1251230:CDS
AAGAACAATCTCAAAGCATG+CGG 0.686734 8_2:-47018745 None:intergenic
AAGTGTTAGATATCAGACCA+CGG 0.687790 8_2:+47018768 Msa1251230:five_prime_UTR
GCTGAGGGTAAAACTCCTGG+TGG 0.693763 8_2:+47022224 Msa1251230:CDS
CGTGCTTTCGACTATCGTCG+TGG 0.698859 8_2:-47017488 None:intergenic
AAAAGATGTAACTTTCGCCG+AGG 0.709369 8_2:-47022375 None:intergenic
GCTGGTGCATCAGTTGTGAG+TGG 0.711756 8_2:+47022431 Msa1251230:CDS
GCTTTCGACTATCGTCGTGG+TGG 0.732645 8_2:-47017485 None:intergenic
CTTCATTATAGCAGACCCTG+CGG 0.733885 8_2:-47022537 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACATAAGAATTAATAAAAA+GGG - chr8_2:47018679-47018698 None:intergenic 10.0%
!! TTACATAAGAATTAATAAAA+AGG - chr8_2:47018680-47018699 None:intergenic 10.0%
!! GTATAATAAAACTTAATAAT+GGG - chr8_2:47019015-47019034 None:intergenic 10.0%
!! TGTATAATAAAACTTAATAA+TGG - chr8_2:47019016-47019035 None:intergenic 10.0%
!! ATATATCAATTAGATTAATA+CGG - chr8_2:47020414-47020433 None:intergenic 10.0%
!!! TTTTTTATATATATAATTGC+TGG - chr8_2:47021814-47021833 None:intergenic 10.0%
!! TTAAATGCAATATCAAAAAA+GGG - chr8_2:47018368-47018387 None:intergenic 15.0%
!! TTTAAATGCAATATCAAAAA+AGG - chr8_2:47018369-47018388 None:intergenic 15.0%
!! ATACTAATAGTATAGTTATA+AGG + chr8_2:47018394-47018413 Msa1251230:intron 15.0%
!! ATCTATTAATTCTTATGTAA+AGG + chr8_2:47018481-47018500 Msa1251230:intron 15.0%
!! TCTATTAATTCTTATGTAAA+GGG + chr8_2:47018482-47018501 Msa1251230:intron 15.0%
!! AGTATAAAATTGAATGAAAA+AGG - chr8_2:47020361-47020380 None:intergenic 15.0%
!! GAACAAATAAAATAGTTTAT+CGG - chr8_2:47020477-47020496 None:intergenic 15.0%
!! TCAGATTTAATATAAATTGA+AGG + chr8_2:47021273-47021292 Msa1251230:intron 15.0%
!! CAGATTTAATATAAATTGAA+GGG + chr8_2:47021274-47021293 Msa1251230:intron 15.0%
!! AGATTTAATATAAATTGAAG+GGG + chr8_2:47021275-47021294 Msa1251230:intron 15.0%
!!! TCTGATTTATCTTTTTATTT+GGG + chr8_2:47021466-47021485 Msa1251230:intron 15.0%
!! TTAATAATACTAATCATTGA+AGG + chr8_2:47021681-47021700 Msa1251230:intron 15.0%
!!! AAATATTACACATTTGTTAT+AGG - chr8_2:47022196-47022215 None:intergenic 15.0%
!!! TGAAAATTTATTTTTACACA+AGG + chr8_2:47023028-47023047 Msa1251230:three_prime_UTR 15.0%
!!! GAAAATTTATTTTTACACAA+GGG + chr8_2:47023029-47023048 Msa1251230:three_prime_UTR 15.0%
!! TTTAAATGTAAAACAAAGAC+CGG - chr8_2:47017912-47017931 None:intergenic 20.0%
!!! AAATAGAACTATTTGAAATG+TGG + chr8_2:47017957-47017976 Msa1251230:intron 20.0%
!! TAATAAAAAAATGCAATGAG+TGG + chr8_2:47018432-47018451 Msa1251230:intron 20.0%
!! CTATTAATTCTTATGTAAAG+GGG + chr8_2:47018483-47018502 Msa1251230:intron 20.0%
!!! CTATTATTACTTTTAGTCAT+AGG + chr8_2:47018709-47018728 Msa1251230:intron 20.0%
!! TTGAATATGTTGAAATGAAA+AGG + chr8_2:47018944-47018963 Msa1251230:CDS 20.0%
!! GTAATGAATATATGATTCTT+TGG - chr8_2:47019263-47019282 None:intergenic 20.0%
!! TATATTATATGTCTGATTCA+TGG + chr8_2:47020072-47020091 Msa1251230:intron 20.0%
!! ATATTATATGTCTGATTCAT+GGG + chr8_2:47020073-47020092 Msa1251230:intron 20.0%
!! AGGATTGAGAATAATAAAAT+AGG + chr8_2:47020250-47020269 Msa1251230:intron 20.0%
!! GGATTGAGAATAATAAAATA+GGG + chr8_2:47020251-47020270 Msa1251230:intron 20.0%
!!! AGTTTTTAGTTAAGTTTTTG+TGG - chr8_2:47020792-47020811 None:intergenic 20.0%
!! ACAAAAACTTAACTAAAAAC+TGG + chr8_2:47020791-47020810 Msa1251230:intron 20.0%
!! TTAAACCTCTTATAAAAGAT+TGG - chr8_2:47020863-47020882 None:intergenic 20.0%
!!! TTATATCTAACACTATTTTC+CGG + chr8_2:47020974-47020993 Msa1251230:intron 20.0%
!!! ATTATCAAAGTTGATCTTTT+TGG + chr8_2:47021128-47021147 Msa1251230:intron 20.0%
!!! GTCTGATTTATCTTTTTATT+TGG + chr8_2:47021465-47021484 Msa1251230:intron 20.0%
!!! ATTTGATGCATGTATATTTT+TGG + chr8_2:47021741-47021760 Msa1251230:intron 20.0%
!!! ACAAATGTGTAATATTTTTC+AGG + chr8_2:47022199-47022218 Msa1251230:intron 20.0%
! TTAAATGTAAAACAAAGACC+GGG - chr8_2:47017911-47017930 None:intergenic 25.0%
! AGTATCAGTTAGTTAAAATC+GGG - chr8_2:47018165-47018184 None:intergenic 25.0%
! CAGTATCAGTTAGTTAAAAT+CGG - chr8_2:47018166-47018185 None:intergenic 25.0%
! AAGAAAGCAATAAATGACAA+AGG - chr8_2:47018295-47018314 None:intergenic 25.0%
!!! GTTACATGTATTTTATTTGC+AGG + chr8_2:47018840-47018859 Msa1251230:CDS 25.0%
! AAAATGAAAAGAACTCCTTT+AGG - chr8_2:47018915-47018934 None:intergenic 25.0%
! TAATATATGTGTATCATGCA+TGG + chr8_2:47019179-47019198 Msa1251230:intron 25.0%
! ATATTCATTACTGAGATTTC+AGG + chr8_2:47019272-47019291 Msa1251230:intron 25.0%
! TATTCATTACTGAGATTTCA+GGG + chr8_2:47019273-47019292 Msa1251230:intron 25.0%
! AGAAAACTGATATTTACTTG+AGG + chr8_2:47019398-47019417 Msa1251230:intron 25.0%
! CATGTTTATGTGAAATGAAT+AGG - chr8_2:47019800-47019819 None:intergenic 25.0%
! GAATCTATATCATAAGAAAG+AGG - chr8_2:47019901-47019920 None:intergenic 25.0%
! AAATCTCAGAATTTCAGATA+CGG - chr8_2:47019923-47019942 None:intergenic 25.0%
! TATTATATGTCTGATTCATG+GGG + chr8_2:47020074-47020093 Msa1251230:intron 25.0%
!!! TTATTTTTCAGCACAAAGTA+GGG - chr8_2:47020161-47020180 None:intergenic 25.0%
!! TTCAATTTTATACTCCCTAA+AGG + chr8_2:47020367-47020386 Msa1251230:intron 25.0%
!!! TGTTCTATTTTGATAGAAAC+TGG + chr8_2:47020492-47020511 Msa1251230:intron 25.0%
! TATTCAGTTATATATCCTAC+TGG - chr8_2:47020520-47020539 None:intergenic 25.0%
! ACTGTATTACTGTATATTCT+CGG + chr8_2:47020543-47020562 Msa1251230:intron 25.0%
! AGCAAGAATAAAAAGGAAAA+GGG - chr8_2:47020719-47020738 None:intergenic 25.0%
! TAGCAAGAATAAAAAGGAAA+AGG - chr8_2:47020720-47020739 None:intergenic 25.0%
!! TCTTATAAAAGATTGGCTAT+AGG - chr8_2:47020856-47020875 None:intergenic 25.0%
!! TATAGCCAATCTTTTATAAG+AGG + chr8_2:47020855-47020874 Msa1251230:intron 25.0%
! AACATCTTCTCTTAATATAG+AGG + chr8_2:47020881-47020900 Msa1251230:intron 25.0%
! GTTGCTTAATCTTTATGTTA+TGG + chr8_2:47021105-47021124 Msa1251230:intron 25.0%
!! TTTTATCTTAAAGCAGTGAA+GGG - chr8_2:47021202-47021221 None:intergenic 25.0%
!! ATTTTATCTTAAAGCAGTGA+AGG - chr8_2:47021203-47021222 None:intergenic 25.0%
!!! ACACTAGTTGTCTTATTTTT+GGG + chr8_2:47021366-47021385 Msa1251230:intron 25.0%
! AAATTGAAAAGAATAGCCTT+TGG + chr8_2:47021402-47021421 Msa1251230:intron 25.0%
! AATAAGTTTACCAACATAGT+AGG - chr8_2:47021549-47021568 None:intergenic 25.0%
! TCCTTAAAATAGCATCAAAT+TGG + chr8_2:47021630-47021649 Msa1251230:intron 25.0%
!!! ACCAATTTGATGCTATTTTA+AGG - chr8_2:47021634-47021653 None:intergenic 25.0%
! AAGAAACAAGACACTTAATT+TGG - chr8_2:47021771-47021790 None:intergenic 25.0%
! TTTGGATAAGTGGTATAATA+TGG + chr8_2:47021987-47022006 Msa1251230:intron 25.0%
! GAAATGAATATCCTAGTTAA+TGG - chr8_2:47022109-47022128 None:intergenic 25.0%
! GATATTCATTTCATCCTATT+CGG + chr8_2:47022117-47022136 Msa1251230:intron 25.0%
! ATGTACAAGAAGTAAATCAA+AGG - chr8_2:47022790-47022809 None:intergenic 25.0%
! AGTCTATGGAGAAAAATATA+AGG + chr8_2:47022971-47022990 Msa1251230:three_prime_UTR 25.0%
! GTCTATGGAGAAAAATATAA+GGG + chr8_2:47022972-47022991 Msa1251230:three_prime_UTR 25.0%
!!! AATTTATTTTTACACAAGGG+TGG + chr8_2:47023032-47023051 Msa1251230:three_prime_UTR 25.0%
CTGATATAAGAAGAGTAAGA+CGG - chr8_2:47017721-47017740 None:intergenic 30.0%
TCTTCTTATATCAGACTGTT+TGG + chr8_2:47017727-47017746 Msa1251230:intron 30.0%
TCGTAGAACTTATGCAAATA+AGG - chr8_2:47017790-47017809 None:intergenic 30.0%
TAAATGTAAAACAAAGACCG+GGG - chr8_2:47017910-47017929 None:intergenic 30.0%
! ACTATTTGAAATGTGGTTTG+AGG + chr8_2:47017964-47017983 Msa1251230:intron 30.0%
! TTTGCTATGCAATTTACACA+TGG + chr8_2:47018010-47018029 Msa1251230:intron 30.0%
!! CATGGATTTTGAGTGATTTA+AGG + chr8_2:47018028-47018047 Msa1251230:intron 30.0%
TAAAATCGTAAATCGTGCAA+TGG - chr8_2:47018133-47018152 None:intergenic 30.0%
!!! CGATTTTAACTAACTGATAC+TGG + chr8_2:47018164-47018183 Msa1251230:intron 30.0%
AACCTCGTGTATAAAAAACA+GGG + chr8_2:47018574-47018593 Msa1251230:intron 30.0%
AATTAATAAAAAGGGCAACC+CGG - chr8_2:47018671-47018690 None:intergenic 30.0%
CAGGTCAAAACTATAAAAGT+CGG + chr8_2:47018859-47018878 Msa1251230:CDS 30.0%
! AAGGAGTTCTTTTCATTTTC+TGG + chr8_2:47018916-47018935 Msa1251230:CDS 30.0%
!! AATTGCCTTTGTTACTTTCA+AGG + chr8_2:47019094-47019113 Msa1251230:CDS 30.0%
CAATCCAAGACAAATTGATT+GGG - chr8_2:47019236-47019255 None:intergenic 30.0%
ACAATCCAAGACAAATTGAT+TGG - chr8_2:47019237-47019256 None:intergenic 30.0%
! GTGTGTCATTATCCTAATAA+AGG + chr8_2:47019313-47019332 Msa1251230:intron 30.0%
!!! AGTTGACTTGTTTAGCTTTT+TGG + chr8_2:47019346-47019365 Msa1251230:intron 30.0%
! AAACTGATAATGCAGCATAA+GGG + chr8_2:47019444-47019463 Msa1251230:intron 30.0%
AGGATACTTATCACCAAAAA+AGG - chr8_2:47019518-47019537 None:intergenic 30.0%
! TTTCATTTTGTCAACACCAA+GGG + chr8_2:47019863-47019882 Msa1251230:intron 30.0%
ACCAACTATCACAAAAACTT+AGG + chr8_2:47020023-47020042 Msa1251230:intron 30.0%
ATCACAAAAACTTAGGCTAT+TGG + chr8_2:47020030-47020049 Msa1251230:intron 30.0%
TCACAAAAACTTAGGCTATT+GGG + chr8_2:47020031-47020050 Msa1251230:intron 30.0%
!!! GTTATTTTTCAGCACAAAGT+AGG - chr8_2:47020162-47020181 None:intergenic 30.0%
! ACTCTTATTTAGACCAATAG+AGG + chr8_2:47020180-47020199 Msa1251230:intron 30.0%
AGATTGAACTCTAGATCAAA+TGG + chr8_2:47020209-47020228 Msa1251230:intron 30.0%
ACGGAGAATAATGATAGAAA+GGG - chr8_2:47020395-47020414 None:intergenic 30.0%
TACGGAGAATAATGATAGAA+AGG - chr8_2:47020396-47020415 None:intergenic 30.0%
AGTTTATCGGTATATCAGTT+TGG - chr8_2:47020464-47020483 None:intergenic 30.0%
AAGTTATCAAGTGGTTGATT+GGG - chr8_2:47020674-47020693 None:intergenic 30.0%
TGTGGTTAGCAAGAATAAAA+AGG - chr8_2:47020726-47020745 None:intergenic 30.0%
ATGTTTGTCAATTATGTGTG+TGG - chr8_2:47020744-47020763 None:intergenic 30.0%
! ACTTAACTAAAAACTGGCTT+TGG + chr8_2:47020797-47020816 Msa1251230:intron 30.0%
! TATAAAAGATTGGCTATAGG+AGG - chr8_2:47020853-47020872 None:intergenic 30.0%
! AGTCAATAGCTTAAGCTTTT+GGG - chr8_2:47020935-47020954 None:intergenic 30.0%
! CTATTTTCCGGCAATTTTAT+TGG + chr8_2:47020986-47021005 Msa1251230:intron 30.0%
TGCATATCCAATAAAATTGC+CGG - chr8_2:47020996-47021015 None:intergenic 30.0%
ACCAACTAAGTATACCAAAT+AGG - chr8_2:47021025-47021044 None:intergenic 30.0%
AAATAAGACAACTAGTGTCT+AGG - chr8_2:47021364-47021383 None:intergenic 30.0%
!!! GACACTAGTTGTCTTATTTT+TGG + chr8_2:47021365-47021384 Msa1251230:intron 30.0%
! CTATGTTGGTAAACTTATTC+TGG + chr8_2:47021550-47021569 Msa1251230:intron 30.0%
TGATATCATTCACTGCTAAA+TGG + chr8_2:47021711-47021730 Msa1251230:intron 30.0%
!! GTGTCTTGTTTCTTTAATGT+AGG + chr8_2:47021777-47021796 Msa1251230:intron 30.0%
!! ACCAAGTTTTTCAACATATC+AGG + chr8_2:47021840-47021859 Msa1251230:intron 30.0%
!! CCAAGTTTTTCAACATATCA+GGG + chr8_2:47021841-47021860 Msa1251230:intron 30.0%
!! CAAGTTTTTCAACATATCAG+GGG + chr8_2:47021842-47021861 Msa1251230:intron 30.0%
!! AAGTTTTTCAACATATCAGG+GGG + chr8_2:47021843-47021862 Msa1251230:intron 30.0%
TTTGTCAGTTAACATAACTC+TGG + chr8_2:47021879-47021898 Msa1251230:CDS 30.0%
! ATGTTTGGAATGGTGATATA+AGG - chr8_2:47022085-47022104 None:intergenic 30.0%
AGTTAATGGTATGTTTGGAA+TGG - chr8_2:47022095-47022114 None:intergenic 30.0%
TTCCAAACATACCATTAACT+AGG + chr8_2:47022095-47022114 Msa1251230:intron 30.0%
ATCCTAGTTAATGGTATGTT+TGG - chr8_2:47022100-47022119 None:intergenic 30.0%
GGCAAAAATATCCTAGTTAA+TGG - chr8_2:47022175-47022194 None:intergenic 30.0%
! ACATCTTTTGACCAAAAACT+TGG + chr8_2:47022389-47022408 Msa1251230:CDS 30.0%
! CATCTTTTGACCAAAAACTT+GGG + chr8_2:47022390-47022409 Msa1251230:CDS 30.0%
ACAGAAAACAAAAGAGAAAG+TGG + chr8_2:47022637-47022656 Msa1251230:CDS 30.0%
AATTTGCAGGAGTTTCAAAA+AGG - chr8_2:47022814-47022833 None:intergenic 30.0%
! GACAGATTTTACTAGTTACT+TGG + chr8_2:47022856-47022875 Msa1251230:three_prime_UTR 30.0%
AGAAACTGAATTTCCAAAGT+TGG + chr8_2:47022918-47022937 Msa1251230:three_prime_UTR 30.0%
AAGCATATCATTTCCAACTT+TGG - chr8_2:47022934-47022953 None:intergenic 30.0%
! TTTTTCTCCATAGACTGAAT+GGG - chr8_2:47022967-47022986 None:intergenic 30.0%
! ATTTTTCTCCATAGACTGAA+TGG - chr8_2:47022968-47022987 None:intergenic 30.0%
TGGAGAAAAATATAAGGGAA+TGG + chr8_2:47022977-47022996 Msa1251230:three_prime_UTR 30.0%
GTTTGAGAGGATGAAGAAAA+CGG - chr8_2:47017584-47017603 None:intergenic 35.0%
! ACATATCAGAAGAAGCGTAA+CGG - chr8_2:47017626-47017645 None:intergenic 35.0%
TTACGCTTCTTCTGATATGT+CGG + chr8_2:47017626-47017645 Msa1251230:five_prime_UTR 35.0%
AAATGTAAAACAAAGACCGG+GGG - chr8_2:47017909-47017928 None:intergenic 35.0%
CAATAAATGACAAAGGAGAC+AGG - chr8_2:47018288-47018307 None:intergenic 35.0%
TCACATGACAACAACTTTAC+CGG - chr8_2:47018523-47018542 None:intergenic 35.0%
TCATGTGACTTAAACGTCAT+AGG + chr8_2:47018535-47018554 Msa1251230:intron 35.0%
CAACCTCGTGTATAAAAAAC+AGG + chr8_2:47018573-47018592 Msa1251230:intron 35.0%
!!! TACCCTGTTTTTTATACACG+AGG - chr8_2:47018579-47018598 None:intergenic 35.0%
CGTGTATAAAAAACAGGGTA+AGG + chr8_2:47018579-47018598 Msa1251230:intron 35.0%
CATACAATACACCAAATGGT+GGG + chr8_2:47018605-47018624 Msa1251230:intron 35.0%
! ACTTTTAGTCATAGGAGTCT+AGG + chr8_2:47018717-47018736 Msa1251230:intron 35.0%
AAGAACAATCTCAAAGCATG+CGG - chr8_2:47018748-47018767 None:intergenic 35.0%
AAGTGTTAGATATCAGACCA+CGG + chr8_2:47018768-47018787 Msa1251230:five_prime_UTR 35.0%
AAAAGTCGGTAATGTTTCCT+TGG + chr8_2:47018873-47018892 Msa1251230:CDS 35.0%
AAAGTCGGTAATGTTTCCTT+GGG + chr8_2:47018874-47018893 Msa1251230:CDS 35.0%
TGGATCCTTGAAAGTAACAA+AGG - chr8_2:47019102-47019121 None:intergenic 35.0%
ATTAGCTGATGATCAATGTC+AGG - chr8_2:47019163-47019182 None:intergenic 35.0%
AAGCTAAACAAGTCAACTCA+AGG - chr8_2:47019344-47019363 None:intergenic 35.0%
! GAAACTGATAATGCAGCATA+AGG + chr8_2:47019443-47019462 Msa1251230:intron 35.0%
ACTTATCACCAAAAAAGGCA+GGG - chr8_2:47019513-47019532 None:intergenic 35.0%
TACTTATCACCAAAAAAGGC+AGG - chr8_2:47019514-47019533 None:intergenic 35.0%
AAATGAACGAGATCAAATGC+TGG - chr8_2:47019638-47019657 None:intergenic 35.0%
AATCCCTTGCTTGTTTAGTT+TGG + chr8_2:47019710-47019729 Msa1251230:intron 35.0%
!! TTGTTTAGTTTGGACCTTAG+AGG + chr8_2:47019720-47019739 Msa1251230:intron 35.0%
! TATGTCTCAGCTACTTTCTT+AGG + chr8_2:47019750-47019769 Msa1251230:intron 35.0%
! AGCTACTTTCTTAGGCATTT+AGG + chr8_2:47019758-47019777 Msa1251230:intron 35.0%
TGCACAATATGAACTAACAG+TGG - chr8_2:47019836-47019855 None:intergenic 35.0%
! GTGTTGACAAAATGAAACAG+AGG - chr8_2:47019860-47019879 None:intergenic 35.0%
! GTTTCATTTTGTCAACACCA+AGG + chr8_2:47019862-47019881 Msa1251230:intron 35.0%
CTTTGTTGAGCATAAACATC+AGG + chr8_2:47019946-47019965 Msa1251230:intron 35.0%
TTGAGCATAAACATCAGGTT+TGG + chr8_2:47019951-47019970 Msa1251230:intron 35.0%
! GCCTAAGTTTTTGTGATAGT+TGG - chr8_2:47020027-47020046 None:intergenic 35.0%
TCAATCTCTGTTTCCTCTAT+TGG - chr8_2:47020196-47020215 None:intergenic 35.0%
AAGAAAGAATTCTCCACCAA+GGG + chr8_2:47020332-47020351 Msa1251230:intron 35.0%
TGAATGAAAAAGGAAACCCT+TGG - chr8_2:47020351-47020370 None:intergenic 35.0%
GGAGAATAATGATAGAAAGG+GGG - chr8_2:47020393-47020412 None:intergenic 35.0%
CGGAGAATAATGATAGAAAG+GGG - chr8_2:47020394-47020413 None:intergenic 35.0%
GTATTACTGTATATTCTCGG+AGG + chr8_2:47020546-47020565 Msa1251230:intron 35.0%
CTGTTGTGTATGTCAGATTT+GGG - chr8_2:47020579-47020598 None:intergenic 35.0%
TCTGTTGTGTATGTCAGATT+TGG - chr8_2:47020580-47020599 None:intergenic 35.0%
ACAGAATTGAAAAGTTCCAC+AGG + chr8_2:47020595-47020614 Msa1251230:intron 35.0%
AGAATCAAGCTCTTGAAACT+TGG - chr8_2:47020645-47020664 None:intergenic 35.0%
GAAGTTATCAAGTGGTTGAT+TGG - chr8_2:47020675-47020694 None:intergenic 35.0%
GTTGTCTAGAAGTTATCAAG+TGG - chr8_2:47020683-47020702 None:intergenic 35.0%
! CAGTCAATAGCTTAAGCTTT+TGG - chr8_2:47020936-47020955 None:intergenic 35.0%
GCCTATTTGGTATACTTAGT+TGG + chr8_2:47021021-47021040 Msa1251230:intron 35.0%
TGCTACTAGAACTAGAAGAA+TGG + chr8_2:47021230-47021249 Msa1251230:intron 35.0%
GCTACTAGAACTAGAAGAAT+GGG + chr8_2:47021231-47021250 Msa1251230:intron 35.0%
GCAACATATCATACTTCCAA+AGG - chr8_2:47021421-47021440 None:intergenic 35.0%
TTGTTGACATCCTACTATGT+TGG + chr8_2:47021536-47021555 Msa1251230:intron 35.0%
ATGTCACTGATATCTATGAG+AGG - chr8_2:47021593-47021612 None:intergenic 35.0%
AAATAGCATCAAATTGGTCC+TGG + chr8_2:47021636-47021655 Msa1251230:intron 35.0%
CCCTGATATGTTGAAAAACT+TGG - chr8_2:47021844-47021863 None:intergenic 35.0%
TTAACTAGAGGGTCTTTACA+AGG - chr8_2:47021951-47021970 None:intergenic 35.0%
ATGAACTCATGTCATCCTAT+TGG + chr8_2:47022050-47022069 Msa1251230:intron 35.0%
TGAACTCATGTCATCCTATT+GGG + chr8_2:47022051-47022070 Msa1251230:intron 35.0%
! TTTGGAATGGTGATATAAGG+TGG - chr8_2:47022082-47022101 None:intergenic 35.0%
! TTTGGAATGGTGATATAAGG+TGG - chr8_2:47022082-47022101 None:intergenic 35.0%
! GTGTTTGGAATGGTGATATA+AGG - chr8_2:47022151-47022170 None:intergenic 35.0%
AGTTAATGGTGTGTTTGGAA+TGG - chr8_2:47022161-47022180 None:intergenic 35.0%
TTCCAAACACACCATTAACT+AGG + chr8_2:47022161-47022180 Msa1251230:intron 35.0%
ATCCTAGTTAATGGTGTGTT+TGG - chr8_2:47022166-47022185 None:intergenic 35.0%
TTGCGAAGGGATTTATCTTA+GGG + chr8_2:47022294-47022313 Msa1251230:CDS 35.0%
CTTAGTGAGAAATTAACTGC+TGG + chr8_2:47022413-47022432 Msa1251230:CDS 35.0%
AAGAATCGCTATATACTCAC+TGG + chr8_2:47022557-47022576 Msa1251230:CDS 35.0%
! TGCTTTTAGTAAGGTTGCTA+AGG + chr8_2:47022598-47022617 Msa1251230:CDS 35.0%
GTGGAAAATGAAGGATTATC+AGG + chr8_2:47023051-47023070 Msa1251230:three_prime_UTR 35.0%
!! TTTGACTTTGAAACGCGTAC+TGG - chr8_2:47017526-47017545 None:intergenic 40.0%
CTAGGAGGAGCAAGATTTAT+GGG - chr8_2:47017696-47017715 None:intergenic 40.0%
TCTAGGAGGAGCAAGATTTA+TGG - chr8_2:47017697-47017716 None:intergenic 40.0%
AAGAAGAGTAAGACGGATCT+AGG - chr8_2:47017714-47017733 None:intergenic 40.0%
! TGATACTGGCTGATCAAGTT+AGG + chr8_2:47018178-47018197 Msa1251230:intron 40.0%
! GATACTGGCTGATCAAGTTA+GGG + chr8_2:47018179-47018198 Msa1251230:intron 40.0%
!! TGTTTTCAGTGTCGAGCTTT+TGG + chr8_2:47018244-47018263 Msa1251230:intron 40.0%
!! GTTTTCAGTGTCGAGCTTTT+GGG + chr8_2:47018245-47018264 Msa1251230:intron 40.0%
AATGACAAAGGAGACAGGAA+AGG - chr8_2:47018283-47018302 None:intergenic 40.0%
! TTATACACGAGGTTGTTTCC+AGG - chr8_2:47018568-47018587 None:intergenic 40.0%
GCTGCATACAATACACCAAA+TGG + chr8_2:47018601-47018620 Msa1251230:intron 40.0%
GCATACAATACACCAAATGG+TGG + chr8_2:47018604-47018623 Msa1251230:intron 40.0%
AGTGTTAGATATCAGACCAC+GGG + chr8_2:47018769-47018788 Msa1251230:five_prime_UTR 40.0%
! ACTGAACGTTTAGAACCTTG+TGG - chr8_2:47018820-47018839 None:intergenic 40.0%
AGCATCTGAACAAGACCTAA+AGG + chr8_2:47018897-47018916 Msa1251230:CDS 40.0%
! GTTACTTTCAAGGATCCACA+AGG + chr8_2:47019104-47019123 Msa1251230:CDS 40.0%
AGCACCCAATCAATTTGTCT+TGG + chr8_2:47019229-47019248 Msa1251230:intron 40.0%
CTCAAGGCAATGCCTTTATT+AGG - chr8_2:47019328-47019347 None:intergenic 40.0%
TGGCTAGATAATGCAGCATA+AGG + chr8_2:47019366-47019385 Msa1251230:intron 40.0%
GGCTAGATAATGCAGCATAA+GGG + chr8_2:47019367-47019386 Msa1251230:intron 40.0%
! ATTTTCACCCCTGCCTTTTT+TGG + chr8_2:47019502-47019521 Msa1251230:intron 40.0%
CTTATCACCAAAAAAGGCAG+GGG - chr8_2:47019512-47019531 None:intergenic 40.0%
AGTATCCTCCATTTCCCAAA+AGG + chr8_2:47019530-47019549 Msa1251230:intron 40.0%
!! AAATGCCTTTTGGGAAATGG+AGG - chr8_2:47019538-47019557 None:intergenic 40.0%
!! GAGAAATGCCTTTTGGGAAA+TGG - chr8_2:47019541-47019560 None:intergenic 40.0%
! TTACGCGAGAAATGCCTTTT+GGG - chr8_2:47019547-47019566 None:intergenic 40.0%
! ATTACGCGAGAAATGCCTTT+TGG - chr8_2:47019548-47019567 None:intergenic 40.0%
GGTCCAAACTAAACAAGCAA+GGG - chr8_2:47019716-47019735 None:intergenic 40.0%
AGGTCCAAACTAAACAAGCA+AGG - chr8_2:47019717-47019736 None:intergenic 40.0%
AGACATATATGCAGCCTCTA+AGG - chr8_2:47019737-47019756 None:intergenic 40.0%
AAACTTAGGCTATTGGGTGA+AGG + chr8_2:47020037-47020056 Msa1251230:intron 40.0%
CAAAGGGCTCTTATGTTAGT+GGG - chr8_2:47020108-47020127 None:intergenic 40.0%
! TTTTCAGCACAAAGTAGGGT+GGG - chr8_2:47020157-47020176 None:intergenic 40.0%
!! TTTTTCAGCACAAAGTAGGG+TGG - chr8_2:47020158-47020177 None:intergenic 40.0%
GAAGAAAGAATTCTCCACCA+AGG + chr8_2:47020331-47020350 Msa1251230:intron 40.0%
ATGAAAAAGGAAACCCTTGG+TGG - chr8_2:47020348-47020367 None:intergenic 40.0%
TGATAGAAACTGGTACCAGT+AGG + chr8_2:47020502-47020521 Msa1251230:intron 40.0%
TCAAGCTCTTGAAACTTGGT+AGG - chr8_2:47020641-47020660 None:intergenic 40.0%
TATCAAGTGGTTGATTGGGA+AGG - chr8_2:47020670-47020689 None:intergenic 40.0%
!! AAACTGGCTTTGGTCAGTAT+TGG + chr8_2:47020807-47020826 Msa1251230:intron 40.0%
GATATGCATCTCTGCCTATT+TGG + chr8_2:47021008-47021027 Msa1251230:intron 40.0%
! CCTTCTCTTTTCTCTGAACA+TGG - chr8_2:47021049-47021068 None:intergenic 40.0%
CCATGTTCAGAGAAAAGAGA+AGG + chr8_2:47021046-47021065 Msa1251230:intron 40.0%
ATTCATGTGATGTCTGATGC+TGG + chr8_2:47021168-47021187 Msa1251230:intron 40.0%
TCAGACATATCCCAAAGTAG+AGG - chr8_2:47021451-47021470 None:intergenic 40.0%
TGAGAGGTTGCATACATCAT+TGG - chr8_2:47021577-47021596 None:intergenic 40.0%
CCTTGAGCACATTAACTAGA+GGG - chr8_2:47021962-47021981 None:intergenic 40.0%
CCTCTAGTTAATGTGCTCAA+GGG + chr8_2:47021960-47021979 Msa1251230:intron 40.0%
! AATGTGCTCAAGGGTATGTT+TGG + chr8_2:47021969-47021988 Msa1251230:intron 40.0%
! CAAGGGTATGTTTGGATAAG+TGG + chr8_2:47021977-47021996 Msa1251230:intron 40.0%
ATAAGGTGGAATAGCCCAAT+AGG - chr8_2:47022068-47022087 None:intergenic 40.0%
ATAAGGTGGAATAGCCGAAT+AGG - chr8_2:47022134-47022153 None:intergenic 40.0%
!!! TAATATTTTTCAGGCCGCTG+AGG + chr8_2:47022208-47022227 Msa1251230:intron 40.0%
!!! AATATTTTTCAGGCCGCTGA+GGG + chr8_2:47022209-47022228 Msa1251230:intron 40.0%
CTTGCGAAGGGATTTATCTT+AGG + chr8_2:47022293-47022312 Msa1251230:CDS 40.0%
AGATGCTGTGAACAAAGCAA+AGG + chr8_2:47022319-47022338 Msa1251230:CDS 40.0%
GATGCTGTGAACAAAGCAAA+GGG + chr8_2:47022320-47022339 Msa1251230:CDS 40.0%
AAAAGATGTAACTTTCGCCG+AGG - chr8_2:47022378-47022397 None:intergenic 40.0%
! TCTCACTAAGCCCAAGTTTT+TGG - chr8_2:47022403-47022422 None:intergenic 40.0%
ATATACTCACTGGTACTACC+TGG + chr8_2:47022567-47022586 Msa1251230:CDS 40.0%
TATACTCACTGGTACTACCT+GGG + chr8_2:47022568-47022587 Msa1251230:CDS 40.0%
! GGTAACTGGTGCTTTTAGTA+AGG + chr8_2:47022589-47022608 Msa1251230:CDS 40.0%
GAAAGTGGAAAATGCAGAAG+TGG + chr8_2:47022652-47022671 Msa1251230:CDS 40.0%
CTCACACTGAAACAATTTGC+AGG - chr8_2:47022827-47022846 None:intergenic 40.0%
! GTCTTTTCCCATTCAGTCTA+TGG + chr8_2:47022957-47022976 Msa1251230:three_prime_UTR 40.0%
TACACAAGGGTGGAAAATGA+AGG + chr8_2:47023042-47023061 Msa1251230:three_prime_UTR 40.0%
AAGAGTAAGACGGATCTAGG+AGG - chr8_2:47017711-47017730 None:intergenic 45.0%
!!! AGTGTCGAGCTTTTGGGTTA+AGG + chr8_2:47018251-47018270 Msa1251230:intron 45.0%
CTTATGTAAAGGGGTAGCCT+TGG + chr8_2:47018492-47018511 Msa1251230:intron 45.0%
AACGTCATAGGTTCAAGTCC+TGG + chr8_2:47018547-47018566 Msa1251230:intron 45.0%
GGAGTGTATGATGCAGAGAT+GGG + chr8_2:47018790-47018809 Msa1251230:exon 45.0%
GAGGTTCACAATGAAACCCT+TGG - chr8_2:47019882-47019901 None:intergenic 45.0%
! ATTGGGTGAAGGCACACAAA+TGG + chr8_2:47020048-47020067 Msa1251230:intron 45.0%
! GCTCTTATGTTAGTGGGCAA+GGG - chr8_2:47020102-47020121 None:intergenic 45.0%
CCAAAGGGCTCTTATGTTAG+TGG - chr8_2:47020109-47020128 None:intergenic 45.0%
CCACTAACATAAGAGCCCTT+TGG + chr8_2:47020106-47020125 Msa1251230:intron 45.0%
AACATAAGAGCCCTTTGGTC+TGG + chr8_2:47020111-47020130 Msa1251230:intron 45.0%
GTCTACACTTCCAGACCAAA+GGG - chr8_2:47020124-47020143 None:intergenic 45.0%
TGTCTACACTTCCAGACCAA+AGG - chr8_2:47020125-47020144 None:intergenic 45.0%
! TGGAAGTGTAGACAATGCAC+AGG + chr8_2:47020131-47020150 Msa1251230:intron 45.0%
GGTCAATGTGTTACGAACTC+AGG + chr8_2:47020230-47020249 Msa1251230:intron 45.0%
TGATAGAAAGGGGGCCTTTA+GGG - chr8_2:47020384-47020403 None:intergenic 45.0%
ATGATAGAAAGGGGGCCTTT+AGG - chr8_2:47020385-47020404 None:intergenic 45.0%
! ACAGGAAAGTGCAGTAGACA+CGG + chr8_2:47020613-47020632 Msa1251230:intron 45.0%
!! TTGGTCAGTATTGGCCTTCT+CGG + chr8_2:47020816-47020835 Msa1251230:intron 45.0%
GGGATAGCTAATTCACGACA+TGG - chr8_2:47020915-47020934 None:intergenic 45.0%
! AAGAGAAGGACTGTGCTGTT+AGG + chr8_2:47021060-47021079 Msa1251230:intron 45.0%
TTGCCTAAGTGCCTCTACTT+TGG + chr8_2:47021437-47021456 Msa1251230:intron 45.0%
TGCCTAAGTGCCTCTACTTT+GGG + chr8_2:47021438-47021457 Msa1251230:intron 45.0%
!! ATCCCAAAGTAGAGGCACTT+AGG - chr8_2:47021443-47021462 None:intergenic 45.0%
AGCATCAAATTGGTCCTGGA+AGG + chr8_2:47021640-47021659 Msa1251230:intron 45.0%
GCAGGTGGAAGTTTGTAATC+TGG - chr8_2:47021907-47021926 None:intergenic 45.0%
CCCTCTAGTTAATGTGCTCA+AGG + chr8_2:47021959-47021978 Msa1251230:intron 45.0%
CCCTTGAGCACATTAACTAG+AGG - chr8_2:47021963-47021982 None:intergenic 45.0%
! AGCAGCTGCAAATGCTGATT+TGG - chr8_2:47022501-47022520 None:intergenic 45.0%
AACAGAAAGTCAGTACCGCA+GGG + chr8_2:47022522-47022541 Msa1251230:CDS 45.0%
CTTCATTATAGCAGACCCTG+CGG - chr8_2:47022540-47022559 None:intergenic 45.0%
!! ACTAAAAGCACCAGTTACCC+AGG - chr8_2:47022588-47022607 None:intergenic 45.0%
!!! TAAGTTTTTTTTTTTTTTTT+TGG + chr8_2:47019472-47019491 Msa1251230:intron 5.0%
!!! TATATTTAAAATTTTATCAT+TGG + chr8_2:47021492-47021511 Msa1251230:intron 5.0%
AACTGGGGTGTGTGTTTGAG+AGG - chr8_2:47017597-47017616 None:intergenic 50.0%
TACACACTTAGAATCGCCCC+CGG + chr8_2:47017890-47017909 Msa1251230:intron 50.0%
! ATGTAAAGGGGTAGCCTTGG+CGG + chr8_2:47018495-47018514 Msa1251230:intron 50.0%
CTAAAGCTCCTGCATACGCA+AGG - chr8_2:47018644-47018663 None:intergenic 50.0%
! ATGCAGGAGCTTTAGTGCAC+CGG + chr8_2:47018649-47018668 Msa1251230:intron 50.0%
! GGGAGTGTATGATGCAGAGA+TGG + chr8_2:47018789-47018808 Msa1251230:exon 50.0%
! GTCTTGTTCAGATGCTCCCA+AGG - chr8_2:47018893-47018912 None:intergenic 50.0%
CGATAGTAGTACTGCCGTCT+CGG - chr8_2:47019132-47019151 None:intergenic 50.0%
CGAGACGGCAGTACTACTAT+CGG + chr8_2:47019130-47019149 Msa1251230:CDS 50.0%
! GGCTCTTATGTTAGTGGGCA+AGG - chr8_2:47020103-47020122 None:intergenic 50.0%
GTGTCTACTGCACTTTCCTG+TGG - chr8_2:47020614-47020633 None:intergenic 50.0%
GGCTATAGGAGGAGAGACAA+AGG - chr8_2:47020842-47020861 None:intergenic 50.0%
TGGTCCTGGAAGGATGAAAC+TGG + chr8_2:47021650-47021669 Msa1251230:intron 50.0%
! CAAACTTCCACCTGCTGCTT+TGG + chr8_2:47021912-47021931 Msa1251230:CDS 50.0%
ACAGATGATGCCAAAGCAGC+AGG - chr8_2:47021925-47021944 None:intergenic 50.0%
! ACCAGGAGTTTTACCCTCAG+CGG - chr8_2:47022225-47022244 None:intergenic 50.0%
!! GTGGTGCTGACTCTGCTTTA+CGG + chr8_2:47022243-47022262 Msa1251230:CDS 50.0%
!! TGCTGACTCTGCTTTACGGA+AGG + chr8_2:47022247-47022266 Msa1251230:CDS 50.0%
TTTACGGAAGGCAGAGGATG+TGG + chr8_2:47022259-47022278 Msa1251230:CDS 50.0%
AAATCCCTTCGCAAGCATGC+TGG - chr8_2:47022288-47022307 None:intergenic 50.0%
CCAGTTGAGTTCAACAGCCT+CGG + chr8_2:47022358-47022377 Msa1251230:CDS 50.0%
GAACAGAAAGTCAGTACCGC+AGG + chr8_2:47022521-47022540 Msa1251230:CDS 50.0%
ACTGGTACTACCTGGGTAAC+TGG + chr8_2:47022575-47022594 Msa1251230:CDS 50.0%
AGTAAGGTTGCTAAGGCAGC+TGG + chr8_2:47022605-47022624 Msa1251230:CDS 50.0%
GTAAGGTTGCTAAGGCAGCT+GGG + chr8_2:47022606-47022625 Msa1251230:CDS 50.0%
TAAGGTTGCTAAGGCAGCTG+GGG + chr8_2:47022607-47022626 Msa1251230:CDS 50.0%
AGTTGAAGACCAGTATGCGC+AGG + chr8_2:47022688-47022707 Msa1251230:CDS 50.0%
!! ACTTGTTGCTGCGGCTTTTG+GGG - chr8_2:47022726-47022745 None:intergenic 50.0%
!! CACTTGTTGCTGCGGCTTTT+GGG - chr8_2:47022727-47022746 None:intergenic 50.0%
!! TCACTTGTTGCTGCGGCTTT+TGG - chr8_2:47022728-47022747 None:intergenic 50.0%
! GTGCAGTTCACTTGTTGCTG+CGG - chr8_2:47022735-47022754 None:intergenic 50.0%
ATCAAACCCTGAGCAGGTGT+AGG - chr8_2:47022767-47022786 None:intergenic 50.0%
CAAAGGATCAAACCCTGAGC+AGG - chr8_2:47022773-47022792 None:intergenic 50.0%
TTCGACTATCGTCGTGGTGG+TGG - chr8_2:47017485-47017504 None:intergenic 55.0%
GCTTTCGACTATCGTCGTGG+TGG - chr8_2:47017488-47017507 None:intergenic 55.0%
CGTGCTTTCGACTATCGTCG+TGG - chr8_2:47017491-47017510 None:intergenic 55.0%
! AGCGTAACGGCGTCGAAACT+GGG - chr8_2:47017613-47017632 None:intergenic 55.0%
! AAGCGTAACGGCGTCGAAAC+TGG - chr8_2:47017614-47017633 None:intergenic 55.0%
!! CAACTTTACCGGTTCCGCCA+AGG - chr8_2:47018512-47018531 None:intergenic 55.0%
CATACGCAAGGTGCGGAAAG+GGG - chr8_2:47018632-47018651 None:intergenic 55.0%
GCATACGCAAGGTGCGGAAA+GGG - chr8_2:47018633-47018652 None:intergenic 55.0%
TGCATACGCAAGGTGCGGAA+AGG - chr8_2:47018634-47018653 None:intergenic 55.0%
TTTCCGCACCTTGCGTATGC+AGG + chr8_2:47018633-47018652 Msa1251230:intron 55.0%
! TGCAGGAGCTTTAGTGCACC+GGG + chr8_2:47018650-47018669 Msa1251230:intron 55.0%
CTCTGCATCATACACTCCCG+TGG - chr8_2:47018788-47018807 None:intergenic 55.0%
! GCAGAGATGGGTTCTCCACA+AGG + chr8_2:47018802-47018821 Msa1251230:exon 55.0%
GGTCAGTGAGTTGCTGTGCT+TGG + chr8_2:47018965-47018984 Msa1251230:intron 55.0%
AGGAGAGACAAAGGCCGAGA+AGG - chr8_2:47020833-47020852 None:intergenic 55.0%
GCAGCCAGTTTCATCCTTCC+AGG - chr8_2:47021657-47021676 None:intergenic 55.0%
GATGATGCCAAAGCAGCAGG+TGG - chr8_2:47021922-47021941 None:intergenic 55.0%
GCTGAGGGTAAAACTCCTGG+TGG + chr8_2:47022224-47022243 Msa1251230:CDS 55.0%
AAAGCAGAGTCAGCACCACC+AGG - chr8_2:47022242-47022261 None:intergenic 55.0%
CTCTGCTTTACGGAAGGCAG+AGG + chr8_2:47022253-47022272 Msa1251230:CDS 55.0%
GTCACCAGCATGCTTGCGAA+GGG + chr8_2:47022281-47022300 Msa1251230:CDS 55.0%
CCGAGGCTGTTGAACTCAAC+TGG - chr8_2:47022361-47022380 None:intergenic 55.0%
GCTGGTGCATCAGTTGTGAG+TGG + chr8_2:47022431-47022450 Msa1251230:CDS 55.0%
CCAGTATGCGCAGGTCCTTT+CGG + chr8_2:47022697-47022716 Msa1251230:CDS 55.0%
TTCCAAGCCTACACCTGCTC+AGG + chr8_2:47022757-47022776 Msa1251230:CDS 55.0%
TCCAAGCCTACACCTGCTCA+GGG + chr8_2:47022758-47022777 Msa1251230:CDS 55.0%
!! GACTATCGTCGTGGTGGTGG+TGG - chr8_2:47017482-47017501 None:intergenic 60.0%
! GCGTAACGGCGTCGAAACTG+GGG - chr8_2:47017612-47017631 None:intergenic 60.0%
CGGAAAGGGGTCCCACCATT+TGG - chr8_2:47018619-47018638 None:intergenic 60.0%
GCTCCTGCATACGCAAGGTG+CGG - chr8_2:47018639-47018658 None:intergenic 60.0%
!! GGATCCACAAGGTGCCGAGA+CGG + chr8_2:47019115-47019134 Msa1251230:CDS 60.0%
GCCGCTGAGGGTAAAACTCC+TGG + chr8_2:47022221-47022240 Msa1251230:CDS 60.0%
GGTCACCAGCATGCTTGCGA+AGG + chr8_2:47022280-47022299 Msa1251230:CDS 60.0%
GCTAAGGCAGCTGGGGATGT+AGG + chr8_2:47022614-47022633 Msa1251230:CDS 60.0%
CCGAAAGGACCTGCGCATAC+TGG - chr8_2:47022700-47022719 None:intergenic 60.0%
!! CGGCTTTTGGGGACTCCGAA+AGG - chr8_2:47022715-47022734 None:intergenic 60.0%
ACCCTGAGCAGGTGTAGGCT+TGG - chr8_2:47022762-47022781 None:intergenic 60.0%
! AGGGGTAGCCTTGGCGGAAC+CGG + chr8_2:47018501-47018520 Msa1251230:intron 65.0%
ACTGCCGTCTCGGCACCTTG+TGG - chr8_2:47019122-47019141 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 47017464 47023082 47017464 ID=Msa1251230;Name=Msa1251230
chr8_2 mRNA 47017464 47023082 47017464 ID=Msa1251230-mRNA-1;Parent=Msa1251230;Name=Msa1251230-mRNA-1;_AED=0.07;_eAED=0.07;_QI=267|1|1|1|0.75|0.8|5|289|295
chr8_2 exon 47017464 47017647 47017464 ID=Msa1251230-mRNA-1:exon:14260;Parent=Msa1251230-mRNA-1
chr8_2 exon 47018725 47018965 47018725 ID=Msa1251230-mRNA-1:exon:14261;Parent=Msa1251230-mRNA-1
chr8_2 exon 47019076 47019151 47019076 ID=Msa1251230-mRNA-1:exon:14262;Parent=Msa1251230-mRNA-1
chr8_2 exon 47021862 47021942 47021862 ID=Msa1251230-mRNA-1:exon:14263;Parent=Msa1251230-mRNA-1
chr8_2 exon 47022221 47023082 47022221 ID=Msa1251230-mRNA-1:exon:14264;Parent=Msa1251230-mRNA-1
chr8_2 five_prime_UTR 47017464 47017647 47017464 ID=Msa1251230-mRNA-1:five_prime_utr;Parent=Msa1251230-mRNA-1
chr8_2 five_prime_UTR 47018725 47018807 47018725 ID=Msa1251230-mRNA-1:five_prime_utr;Parent=Msa1251230-mRNA-1
chr8_2 CDS 47018808 47018965 47018808 ID=Msa1251230-mRNA-1:cds;Parent=Msa1251230-mRNA-1
chr8_2 CDS 47019076 47019151 47019076 ID=Msa1251230-mRNA-1:cds;Parent=Msa1251230-mRNA-1
chr8_2 CDS 47021862 47021942 47021862 ID=Msa1251230-mRNA-1:cds;Parent=Msa1251230-mRNA-1
chr8_2 CDS 47022221 47022793 47022221 ID=Msa1251230-mRNA-1:cds;Parent=Msa1251230-mRNA-1
chr8_2 three_prime_UTR 47022794 47023082 47022794 ID=Msa1251230-mRNA-1:three_prime_utr;Parent=Msa1251230-mRNA-1
Gene Sequence

>Msa1251230

ATGGGTTCTCCACAAGGTTCTAAACGTTCAGTGTTACATGTATTTTATTTGCAGGTCAAAACTATAAAAGTCGGTAATGTTTCCTTGGGAGCATCTGAACAAGACCTAAAGGAGTTCTTTTCATTTTCTGGTGACATTGAATATGTTGAAATGAAAAGCTACGATGAACGATCTCAAATTGCCTTTGTTACTTTCAAGGATCCACAAGGTGCCGAGACGGCAGTACTACTATCGGGGGCAACAATAGTTGATTTGTCAGTTAACATAACTCTGGATCCAGATTACAAACTTCCACCTGCTGCTTTGGCATCATCTGCCGCTGAGGGTAAAACTCCTGGTGGTGCTGACTCTGCTTTACGGAAGGCAGAGGATGTGGTCACCAGCATGCTTGCGAAGGGATTTATCTTAGGGAAAGATGCTGTGAACAAAGCAAAGGGTTTTGATGAGAAGCACCAGTTGAGTTCAACAGCCTCGGCGAAAGTTACATCTTTTGACCAAAAACTTGGGCTTAGTGAGAAATTAACTGCTGGTGCATCAGTTGTGAGTGGTAGAGTTAAAGAAGTGGATCAGAAGTTTCAGGTTTCAGAAAAGACCAAATCAGCATTTGCAGCTGCTGAACAGAAAGTCAGTACCGCAGGGTCTGCTATAATGAAGAATCGCTATATACTCACTGGTACTACCTGGGTAACTGGTGCTTTTAGTAAGGTTGCTAAGGCAGCTGGGGATGTAGGACAGAAAACAAAAGAGAAAGTGGAAAATGCAGAAGTGGAACATAATCGTAAAGTTGAAGACCAGTATGCGCAGGTCCTTTCGGAGTCCCCAAAAGCCGCAGCAACAAGTGAACTGCACTCTTCCAAGCCTACACCTGCTCAGGGTTTGATCCTTTGA

Protein sequence

>Msa1251230

MGSPQGSKRSVLHVFYLQVKTIKVGNVSLGASEQDLKEFFSFSGDIEYVEMKSYDERSQIAFVTFKDPQGAETAVLLSGATIVDLSVNITLDPDYKLPPAALASSAAEGKTPGGADSALRKAEDVVTSMLAKGFILGKDAVNKAKGFDEKHQLSSTASAKVTSFDQKLGLSEKLTAGASVVSGRVKEVDQKFQVSEKTKSAFAAAEQKVSTAGSAIMKNRYILTGTTWVTGAFSKVAKAAGDVGQKTKEKVENAEVEHNRKVEDQYAQVLSESPKAAATSELHSSKPTPAQGLIL*