AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1036250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1036250 MtrunA17_Chr7g0260531 88.344 163 10 3 1 162 1 155 4.98e-99 286
Msa1036250 MtrunA17_Chr1g0184911 51.235 162 75 3 1 162 9 166 1.98e-52 168
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1036250 AT1G03055.2 39.024 123 69 2 46 162 50 172 1.26e-22 90.1
Msa1036250 AT1G03055.1 39.024 123 69 2 46 162 50 172 6.12e-22 89.7

Find 63 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTATATACTAATATTATT+TGG 0.179495 7_1:-72609952 Msa1036250:three_prime_UTR
AGGATTTGTTGTAGGCTTTA+AGG 0.181015 7_1:-72610212 Msa1036250:three_prime_UTR
AAATAATATTAGTATATAAT+AGG 0.224577 7_1:+72609954 None:intergenic
ATGTTCTTTACTTGGTTACT+TGG 0.266301 7_1:-72613179 Msa1036250:CDS
CAAAGGTTTATTTATATGAT+AGG 0.284336 7_1:-72610009 Msa1036250:three_prime_UTR
CCTTGTTGAGGCAGCTACTA+TGG 0.314275 7_1:-72613441 Msa1036250:CDS
GGATTTGTTGTAGGCTTTAA+GGG 0.320503 7_1:-72610211 Msa1036250:three_prime_UTR
TTTCTTAATGAGAGAAACTA+TGG 0.328939 7_1:+72610118 None:intergenic
ATGCAATAAGGATTGGAAAT+TGG 0.329708 7_1:-72610314 Msa1036250:three_prime_UTR
GCAATGGAATGAATTGTATA+AGG 0.338599 7_1:+72613850 None:intergenic
TCTGTAATGTCATGATTTGA+AGG 0.353713 7_1:+72613673 None:intergenic
CAGATTCTGCTCTTTCCGTT+TGG 0.357589 7_1:+72613948 None:intergenic
GTGTTAATAAGAGGCATATA+AGG 0.359524 7_1:+72613881 None:intergenic
TTGACTAAAGGATTTGTTGT+AGG 0.371806 7_1:-72610220 Msa1036250:three_prime_UTR
CTATCATATAAATAAACCTT+TGG 0.398207 7_1:+72610010 None:intergenic
CTAATGTCTACAAAGATAAC+TGG 0.401094 7_1:-72613627 Msa1036250:CDS
AATAATATTAGTATATAATA+GGG 0.409170 7_1:+72609955 None:intergenic
TCACCACTATGTTCTTTACT+TGG 0.413302 7_1:-72613187 Msa1036250:CDS
GGGAGAAGTGGTTTGACTAA+AGG 0.415057 7_1:-72610232 Msa1036250:three_prime_UTR
TTATTAATGTTAATTTAAAC+CGG 0.418972 7_1:-72610373 Msa1036250:three_prime_UTR
TATAAACATGTAATTATTAG+TGG 0.430014 7_1:+72610499 None:intergenic
CAAACGGAAAGAGCAGAATC+TGG 0.433242 7_1:-72613947 Msa1036250:five_prime_UTR
CTTTAGCATGCAATAAGGAT+TGG 0.438630 7_1:-72610321 Msa1036250:three_prime_UTR
CTTGTGAATTTGGGTGGTAG+TGG 0.454396 7_1:+72613227 None:intergenic
GGCTTTAAGGGCAGCAAGGA+TGG 0.455650 7_1:-72610199 Msa1036250:three_prime_UTR
GTTACCATTCAAGCTCTTGA+AGG 0.469565 7_1:-72613383 Msa1036250:CDS
GAGTCCTTCAAGAGCTTGAA+TGG 0.470597 7_1:+72613379 None:intergenic
GAACAACAAGTGTTAATAAG+AGG 0.472509 7_1:+72613872 None:intergenic
CTCAAAACAACATTCACAAA+TGG 0.473195 7_1:-72613806 Msa1036250:exon
CCCACAGTTTGTATTTGCAT+TGG 0.474798 7_1:-72613354 Msa1036250:intron
TGTTCTTTACTTGGTTACTT+GGG 0.479606 7_1:-72613178 Msa1036250:CDS
TGGCTGATGAGTATGAGTTT+TGG 0.479804 7_1:+72610138 None:intergenic
TGCTAAGGATCACTATTCTC+CGG 0.480828 7_1:+72610354 None:intergenic
ACTATAGAAGTTGGATGTTG+AGG 0.505938 7_1:+72613712 None:intergenic
AGCACGGCAACTATAGAAGT+TGG 0.508359 7_1:+72613703 None:intergenic
GTTGAGGTTTATGTTTGATG+AGG 0.512812 7_1:+72613728 None:intergenic
TAATGCTATTCAACAGCAAG+AGG 0.529114 7_1:-72613405 Msa1036250:CDS
ACCAATGCAAATACAAACTG+TGG 0.535997 7_1:+72613353 None:intergenic
CAGACTGTCTCTAGACGGTA+TGG 0.546844 7_1:-72610565 Msa1036250:CDS
CTGTCTCTAGACGGTATGGA+TGG 0.550258 7_1:-72610561 Msa1036250:CDS
GGCAAGGCATATAAAAGTCA+TGG 0.554697 7_1:-72610590 Msa1036250:CDS
AATCTATTATCTAAACCAAA+CGG 0.556799 7_1:-72613963 Msa1036250:five_prime_UTR
AATTCCCTTGTGAATTTGGG+TGG 0.557950 7_1:+72613221 None:intergenic
ATTTGAAGGCTTTCTAAGCA+CGG 0.562335 7_1:+72613687 None:intergenic
TGAACCTGTGGCAGCTTGAA+CGG 0.569981 7_1:+72613570 None:intergenic
CACTACCACCCAAATTCACA+AGG 0.576963 7_1:-72613226 Msa1036250:CDS
AAAACCGTTCAAGCTGCCAC+AGG 0.594953 7_1:-72613574 Msa1036250:intron
CCATAGTAGCTGCCTCAACA+AGG 0.595349 7_1:+72613441 None:intergenic
TTGGTTACTTGGGCCATCCG+AGG 0.598797 7_1:-72613168 Msa1036250:intron
TGTAGGCTTTAAGGGCAGCA+AGG 0.609155 7_1:-72610203 Msa1036250:three_prime_UTR
TGTGACAGAGAAATATGCAA+TGG 0.613866 7_1:+72613834 None:intergenic
TAACCAAGTAAAGAACATAG+TGG 0.616885 7_1:+72613184 None:intergenic
ATGTAATTATTAGTGGTACA+TGG 0.617075 7_1:+72610506 None:intergenic
TGGCTATGAGAGCCTTGTTG+AGG 0.620691 7_1:-72613453 Msa1036250:CDS
CCAATGCAAATACAAACTGT+GGG 0.624542 7_1:+72613354 None:intergenic
ATAAGTGACTAATAATCCAA+AGG 0.630896 7_1:-72610026 Msa1036250:three_prime_UTR
TTATTTATATGATAGGCAAG+TGG 0.638536 7_1:-72610002 Msa1036250:three_prime_UTR
GGACTCAGAAACAATAAGAG+TGG 0.655708 7_1:-72613473 Msa1036250:CDS
GAAATTGGTGATGACAACAT+TGG 0.656972 7_1:-72610299 Msa1036250:three_prime_UTR
TGGAACAGACTGTCTCTAGA+CGG 0.681909 7_1:-72610570 Msa1036250:CDS
GGCAGCATACGAAATGTGTG+TGG 0.683839 7_1:+72610159 None:intergenic
GCAGCATACGAAATGTGTGT+GGG 0.701231 7_1:+72610160 None:intergenic
ACTACCACCCAAATTCACAA+GGG 0.738747 7_1:-72613225 Msa1036250:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAATGTTTAATGTAAA+TGG - chr7_1:72611012-72611031 Msa1036250:intron 10.0%
!!! ATTAATCTTTTTTAAATCAT+AGG + chr7_1:72611431-72611450 None:intergenic 10.0%
!! TATGAATTGAAAATATAAAT+TGG + chr7_1:72613183-72613202 None:intergenic 10.0%
!! TTATTAATGTTAATTTAAAC+CGG - chr7_1:72613543-72613562 Msa1036250:intron 10.0%
!! CTTAATTCATTTATACTATA+TGG - chr7_1:72611558-72611577 Msa1036250:intron 15.0%
!!! TTCATTTGTTTATTTTTTAG+TGG + chr7_1:72612136-72612155 None:intergenic 15.0%
!! TAACTTAACAGATATTATTT+AGG + chr7_1:72612363-72612382 None:intergenic 15.0%
!! TAATGATGAAAAATAAATGA+GGG - chr7_1:72612924-72612943 Msa1036250:intron 15.0%
!! AAAAAAAAGAGTAATAAAGT+TGG + chr7_1:72613247-72613266 None:intergenic 15.0%
!! TATAAACATGTAATTATTAG+TGG + chr7_1:72613420-72613439 None:intergenic 15.0%
!!! TTTATATTTTCTTCTTCTTT+GGG - chr7_1:72613434-72613453 Msa1036250:CDS 15.0%
!!! TAAAGAAAAATTTTATGCTA+AGG + chr7_1:72613580-72613599 None:intergenic 15.0%
!! AATCTATTATCTAAACCAAA+CGG - chr7_1:72609953-72609972 Msa1036250:three_prime_UTR 20.0%
!! ACAATTGAATTACAACAAAA+GGG + chr7_1:72610378-72610397 None:intergenic 20.0%
!! AACAATTGAATTACAACAAA+AGG + chr7_1:72610379-72610398 None:intergenic 20.0%
!! GAAATTACAATGCTTAAAAA+TGG + chr7_1:72610621-72610640 None:intergenic 20.0%
!! ACATAAAAACAATTTCATTG+TGG + chr7_1:72610643-72610662 None:intergenic 20.0%
!! GAAATTTACTATAAGCTTAA+TGG - chr7_1:72610892-72610911 Msa1036250:intron 20.0%
!! GATATGTTATAGATAAACTA+AGG + chr7_1:72611202-72611221 None:intergenic 20.0%
!!! ATCTTTTTTAAATCATAGGA+CGG + chr7_1:72611427-72611446 None:intergenic 20.0%
!! TGAATTATGAAGGATATATA+CGG + chr7_1:72611589-72611608 None:intergenic 20.0%
!! TCAAAAAAATTAATACATGC+AGG - chr7_1:72611917-72611936 Msa1036250:intron 20.0%
!! ATTCCAAATTAAACCTAAAT+AGG - chr7_1:72612061-72612080 Msa1036250:intron 20.0%
!!! TTTCCTATTTAGGTTTAATT+TGG + chr7_1:72612067-72612086 None:intergenic 20.0%
!! GTTAAGTTAAACTTCATATA+TGG - chr7_1:72612374-72612393 Msa1036250:intron 20.0%
!! ATATTAACTCAAGAACTATA+GGG + chr7_1:72612451-72612470 None:intergenic 20.0%
!! AATATTAACTCAAGAACTAT+AGG + chr7_1:72612452-72612471 None:intergenic 20.0%
!! AATGTTGAGTATTAATTCAA+TGG + chr7_1:72612738-72612757 None:intergenic 20.0%
!!! CTCATTTATTTTTCATCATT+AGG + chr7_1:72612925-72612944 None:intergenic 20.0%
!! CTAATGATGAAAAATAAATG+AGG - chr7_1:72612923-72612942 Msa1036250:intron 20.0%
!! GAGATTTATTTAATGATGTT+AGG + chr7_1:72612955-72612974 None:intergenic 20.0%
!! CTAAATGTATACTTCAATAA+TGG + chr7_1:72612980-72612999 None:intergenic 20.0%
!!! GTTTATATTTTCTTCTTCTT+TGG - chr7_1:72613433-72613452 Msa1036250:CDS 20.0%
!!! TTATATTTTCTTCTTCTTTG+GGG - chr7_1:72613435-72613454 Msa1036250:CDS 20.0%
!!! TACATTTTCTGTAGAAAATT+AGG - chr7_1:72613475-72613494 Msa1036250:CDS 20.0%
!!! GATTTTGCAATCATAAATAA+AGG + chr7_1:72613646-72613665 None:intergenic 20.0%
!!! AATCAAGTAGTTTCTATTTT+TGG - chr7_1:72613662-72613681 Msa1036250:CDS 20.0%
!!! ATCAAGTAGTTTCTATTTTT+GGG - chr7_1:72613663-72613682 Msa1036250:CDS 20.0%
!! CTATCATATAAATAAACCTT+TGG + chr7_1:72613909-72613928 None:intergenic 20.0%
!! CAAAGGTTTATTTATATGAT+AGG - chr7_1:72613907-72613926 Msa1036250:five_prime_UTR 20.0%
!! AAATGGAAACTAATGTTTTC+AGG - chr7_1:72610127-72610146 Msa1036250:three_prime_UTR 25.0%
! GTAATTCAATTGTTATCTCA+AGG - chr7_1:72610385-72610404 Msa1036250:three_prime_UTR 25.0%
!! TTGTAGTTTTTATTCTTTGC+AGG - chr7_1:72610422-72610441 Msa1036250:three_prime_UTR 25.0%
! AAAAATTCCCTTGTGAATTT+GGG + chr7_1:72610701-72610720 None:intergenic 25.0%
! AAAAAATTCCCTTGTGAATT+TGG + chr7_1:72610702-72610721 None:intergenic 25.0%
!!! TTTTTTTCAACAAGACTTAG+TGG + chr7_1:72610954-72610973 None:intergenic 25.0%
!! TCTTTAATTTAACCATGAGT+AGG - chr7_1:72611452-72611471 Msa1036250:intron 25.0%
! GACAAAAATCATAACAAGAA+AGG + chr7_1:72611825-72611844 None:intergenic 25.0%
!!! TCTTGTTATGATTTTTGTCA+TGG - chr7_1:72611826-72611845 Msa1036250:intron 25.0%
!! AATTAATACATGCAGGTTTT+TGG - chr7_1:72611924-72611943 Msa1036250:intron 25.0%
! TTCTTTATAAACGATTGAGT+TGG + chr7_1:72611994-72612013 None:intergenic 25.0%
!!! AGGTTTAATTTGGAATTGTT+AGG + chr7_1:72612057-72612076 None:intergenic 25.0%
! CATCATGATATTTCCTATTT+AGG + chr7_1:72612077-72612096 None:intergenic 25.0%
!!! TCATCATTGATTCATTTCAA+TGG - chr7_1:72612228-72612247 Msa1036250:intron 25.0%
!!! ATATGAGAGATGTCATTTTA+TGG + chr7_1:72612299-72612318 None:intergenic 25.0%
!! ATATTATTTAGGTTCATGAG+AGG + chr7_1:72612352-72612371 None:intergenic 25.0%
!! TTTTAATCTTCCAATGTATG+AGG - chr7_1:72612419-72612438 Msa1036250:intron 25.0%
! ATATCTCTAGTTAGTCAATT+TGG - chr7_1:72612479-72612498 Msa1036250:intron 25.0%
!! GACATTACATTACACTTTTA+AGG - chr7_1:72612793-72612812 Msa1036250:intron 25.0%
! TAATCACATTGTTTATAGCA+TGG + chr7_1:72613126-72613145 None:intergenic 25.0%
!!! CAAAATTTGAGACATGATTT+TGG - chr7_1:72613211-72613230 Msa1036250:CDS 25.0%
! ATGTAATTATTAGTGGTACA+TGG + chr7_1:72613413-72613432 None:intergenic 25.0%
!! TTTTTCTTTAGCATGCAATA+AGG - chr7_1:72613590-72613609 Msa1036250:CDS 25.0%
!!! TCAAGTAGTTTCTATTTTTG+GGG - chr7_1:72613664-72613683 Msa1036250:CDS 25.0%
! TTTCTTAATGAGAGAAACTA+TGG + chr7_1:72613801-72613820 None:intergenic 25.0%
! ATAAGTGACTAATAATCCAA+AGG - chr7_1:72613890-72613909 Msa1036250:five_prime_UTR 25.0%
! TTATTTATATGATAGGCAAG+TGG - chr7_1:72613914-72613933 Msa1036250:five_prime_UTR 25.0%
! GTGTTAATAAGAGGCATATA+AGG + chr7_1:72610038-72610057 None:intergenic 30.0%
GAACAACAAGTGTTAATAAG+AGG + chr7_1:72610047-72610066 None:intergenic 30.0%
GCAATGGAATGAATTGTATA+AGG + chr7_1:72610069-72610088 None:intergenic 30.0%
CTCAAAACAACATTCACAAA+TGG - chr7_1:72610110-72610129 Msa1036250:three_prime_UTR 30.0%
TCTGTAATGTCATGATTTGA+AGG + chr7_1:72610246-72610265 None:intergenic 30.0%
CTAATGTCTACAAAGATAAC+TGG - chr7_1:72610289-72610308 Msa1036250:three_prime_UTR 30.0%
! CTTGAACGGTTTTTGATAAA+TGG + chr7_1:72610335-72610354 None:intergenic 30.0%
!! GCTGTTTCTTTATCTGTAAT+TGG + chr7_1:72610670-72610689 None:intergenic 30.0%
TAACCAAGTAAAGAACATAG+TGG + chr7_1:72610735-72610754 None:intergenic 30.0%
ATGTTCTTTACTTGGTTACT+TGG - chr7_1:72610737-72610756 Msa1036250:intron 30.0%
TGTTCTTTACTTGGTTACTT+GGG - chr7_1:72610738-72610757 Msa1036250:intron 30.0%
!! AACATCTCAGTTTTATACCT+CGG + chr7_1:72610768-72610787 None:intergenic 30.0%
!!! CTTGTATTTTGATAAACCTC+TGG + chr7_1:72611075-72611094 None:intergenic 30.0%
TTGCTAATGAAACTGAAATG+TGG + chr7_1:72611281-72611300 None:intergenic 30.0%
GTAAAAGCAAATAGCATACA+TGG + chr7_1:72611401-72611420 None:intergenic 30.0%
! TAAGAGAATCTGAGATCAAT+GGG - chr7_1:72611475-72611494 Msa1036250:intron 30.0%
! GATAGAGAAGCAATGATTTT+AGG - chr7_1:72611700-72611719 Msa1036250:intron 30.0%
! AGAAGCATGATCATAGATTA+TGG + chr7_1:72611782-72611801 None:intergenic 30.0%
ATCGTTTATAAAGAACACTC+TGG - chr7_1:72611999-72612018 Msa1036250:intron 30.0%
TCGTTTATAAAGAACACTCT+GGG - chr7_1:72612000-72612019 Msa1036250:intron 30.0%
!! TCATTGATTCATTTCAATGG+AGG - chr7_1:72612231-72612250 Msa1036250:intron 30.0%
AATGACATCTCTCATATCTA+TGG - chr7_1:72612302-72612321 Msa1036250:intron 30.0%
ATTGGATGTAAAAACACATG+AGG + chr7_1:72612636-72612655 None:intergenic 30.0%
TGAACTTATCATAGAATGAG+TGG - chr7_1:72612862-72612881 Msa1036250:intron 30.0%
ATGAGTTGTGAGATGATATT+TGG - chr7_1:72613057-72613076 Msa1036250:intron 30.0%
TTTATGTTCATATACCATGC+AGG - chr7_1:72613305-72613324 Msa1036250:intron 30.0%
ATGCAATAAGGATTGGAAAT+TGG - chr7_1:72613602-72613621 Msa1036250:CDS 30.0%
!! TTGACTAAAGGATTTGTTGT+AGG - chr7_1:72613696-72613715 Msa1036250:CDS 30.0%
TGTGACAGAGAAATATGCAA+TGG + chr7_1:72610085-72610104 None:intergenic 35.0%
GTTGAGGTTTATGTTTGATG+AGG + chr7_1:72610191-72610210 None:intergenic 35.0%
ACTATAGAAGTTGGATGTTG+AGG + chr7_1:72610207-72610226 None:intergenic 35.0%
ATTTGAAGGCTTTCTAAGCA+CGG + chr7_1:72610232-72610251 None:intergenic 35.0%
TAATGCTATTCAACAGCAAG+AGG - chr7_1:72610511-72610530 Msa1036250:three_prime_UTR 35.0%
CCAATGCAAATACAAACTGT+GGG + chr7_1:72610565-72610584 None:intergenic 35.0%
ACCAATGCAAATACAAACTG+TGG + chr7_1:72610566-72610585 None:intergenic 35.0%
TCACCACTATGTTCTTTACT+TGG - chr7_1:72610729-72610748 Msa1036250:intron 35.0%
TTCAGTCGCATAATTAGTAG+TGG + chr7_1:72610875-72610894 None:intergenic 35.0%
ATAAGCTTAATGGTGATAGC+TGG - chr7_1:72610902-72610921 Msa1036250:intron 35.0%
TGATTAGAAAGACACTTGCA+TGG - chr7_1:72611097-72611116 Msa1036250:intron 35.0%
TAATTGTCACACCAGTTAGT+GGG + chr7_1:72611229-72611248 None:intergenic 35.0%
AACTGAAATGTGGCATAATC+TGG + chr7_1:72611271-72611290 None:intergenic 35.0%
! GTAAGAGAATCTGAGATCAA+TGG - chr7_1:72611474-72611493 Msa1036250:intron 35.0%
CAGTCTACATCAAAAAATGC+AGG - chr7_1:72611514-72611533 Msa1036250:intron 35.0%
TATGTGACAGAATGTGTCTT+AGG + chr7_1:72611616-72611635 None:intergenic 35.0%
AGATCCTCTAAATCGTTGTA+TGG - chr7_1:72611648-72611667 Msa1036250:intron 35.0%
CTCTAAATCGTTGTATGGTT+CGG - chr7_1:72611653-72611672 Msa1036250:intron 35.0%
CGAAAGCTAATGTATCCTAT+TGG + chr7_1:72611681-72611700 None:intergenic 35.0%
TATGATCATGCTTCTCCTTA+CGG - chr7_1:72611787-72611806 Msa1036250:intron 35.0%
ATCATAACAAGAAAGGAGAG+TGG + chr7_1:72611818-72611837 None:intergenic 35.0%
TTGACAACAAACTCTTGCTA+TGG + chr7_1:72611855-72611874 None:intergenic 35.0%
!! TAATACATGCAGGTTTTTGG+AGG - chr7_1:72611927-72611946 Msa1036250:intron 35.0%
GAATTGTTAGGACACTTACT+TGG + chr7_1:72612045-72612064 None:intergenic 35.0%
!! CTACACTTGAAAGAGTATCA+TGG - chr7_1:72612169-72612188 Msa1036250:intron 35.0%
AATGGTTTCGGGATAAATTC+TGG + chr7_1:72612564-72612583 None:intergenic 35.0%
AGTTTACAATGAGGAATGTG+CGG + chr7_1:72612612-72612631 None:intergenic 35.0%
CCAACGTGTTATACTCATAT+TGG + chr7_1:72612654-72612673 None:intergenic 35.0%
CCAATATGAGTATAACACGT+TGG - chr7_1:72612651-72612670 Msa1036250:intron 35.0%
! ATAGTTTGTGTCGCTATGTA+TGG - chr7_1:72612691-72612710 Msa1036250:intron 35.0%
CAATGGATCAAACTAACAAG+AGG + chr7_1:72612721-72612740 None:intergenic 35.0%
AAGAGTAATAAAGTTGGCGT+TGG + chr7_1:72613241-72613260 None:intergenic 35.0%
CTTTAGCATGCAATAAGGAT+TGG - chr7_1:72613595-72613614 Msa1036250:CDS 35.0%
!! GAAATTGGTGATGACAACAT+TGG - chr7_1:72613617-72613636 Msa1036250:CDS 35.0%
!!! TTTCTATTTTTGGGGAGAAG+TGG - chr7_1:72613672-72613691 Msa1036250:CDS 35.0%
!! AGGATTTGTTGTAGGCTTTA+AGG - chr7_1:72613704-72613723 Msa1036250:CDS 35.0%
!! GGATTTGTTGTAGGCTTTAA+GGG - chr7_1:72613705-72613724 Msa1036250:CDS 35.0%
! AAAGGGTATGTATGAACCTG+TGG + chr7_1:72610361-72610380 None:intergenic 40.0%
GGACTCAGAAACAATAAGAG+TGG - chr7_1:72610443-72610462 Msa1036250:three_prime_UTR 40.0%
GTTACCATTCAAGCTCTTGA+AGG - chr7_1:72610533-72610552 Msa1036250:exon 40.0%
CCCACAGTTTGTATTTGCAT+TGG - chr7_1:72610562-72610581 Msa1036250:CDS 40.0%
ACTACCACCCAAATTCACAA+GGG - chr7_1:72610691-72610710 Msa1036250:intron 40.0%
AATTCCCTTGTGAATTTGGG+TGG + chr7_1:72610698-72610717 None:intergenic 40.0%
!! TCTCAGTTTTATACCTCGGA+TGG + chr7_1:72610764-72610783 None:intergenic 40.0%
! GTCGCATAATTAGTAGTGGA+AGG + chr7_1:72610871-72610890 None:intergenic 40.0%
!! AAGACTTAGTGGACTCGATT+TGG + chr7_1:72610943-72610962 None:intergenic 40.0%
GGCAGAGCAGAAAATATAGT+CGG - chr7_1:72611033-72611052 Msa1036250:intron 40.0%
CAGAGACATTAACAAACCAG+AGG - chr7_1:72611056-72611075 Msa1036250:intron 40.0%
!! CCACTCGTTTTCTAGTAACA+AGG + chr7_1:72611164-72611183 None:intergenic 40.0%
CCTTGTTACTAGAAAACGAG+TGG - chr7_1:72611161-72611180 Msa1036250:intron 40.0%
AATTGTCACACCAGTTAGTG+GGG + chr7_1:72611228-72611247 None:intergenic 40.0%
CTAATTGTCACACCAGTTAG+TGG + chr7_1:72611230-72611249 None:intergenic 40.0%
CAGATTCTCTTACCTACTCA+TGG + chr7_1:72611467-72611486 None:intergenic 40.0%
CTTAGGTGGGTGAATTATGA+AGG + chr7_1:72611599-72611618 None:intergenic 40.0%
TGACAGAATGTGTCTTAGGT+GGG + chr7_1:72611612-72611631 None:intergenic 40.0%
CGAACCATACAACGATTTAG+AGG + chr7_1:72611655-72611674 None:intergenic 40.0%
!! GGATTTTAGAGACCATATGC+TGG - chr7_1:72611721-72611740 Msa1036250:intron 40.0%
GAACCATACAACGACTTTAG+AGG - chr7_1:72611747-72611766 Msa1036250:intron 40.0%
!! GATCCTCTAAAGTCGTTGTA+TGG + chr7_1:72611753-72611772 None:intergenic 40.0%
! TACAACGACTTTAGAGGATC+TGG - chr7_1:72611753-72611772 Msa1036250:intron 40.0%
TTGGAGGAGACAAATTGTGT+AGG - chr7_1:72611943-72611962 Msa1036250:intron 40.0%
TGGAGGAGACAAATTGTGTA+GGG - chr7_1:72611944-72611963 Msa1036250:intron 40.0%
TTACTTGGTACCATGTTGAC+TGG + chr7_1:72612030-72612049 None:intergenic 40.0%
TATCCCGAAACCATTTCTGT+TGG - chr7_1:72612569-72612588 Msa1036250:intron 40.0%
TCTGCCAACAGAAATGGTTT+CGG + chr7_1:72612576-72612595 None:intergenic 40.0%
ACATGAGGCAGTTTACAATG+AGG + chr7_1:72612621-72612640 None:intergenic 40.0%
GATCATCAATTGATGCTGGA+GGG + chr7_1:72613089-72613108 None:intergenic 40.0%
GATGGATCATCAATTGATGC+TGG + chr7_1:72613093-72613112 None:intergenic 40.0%
! TTTTATATGCCTTGCCTGCA+TGG + chr7_1:72613322-72613341 None:intergenic 40.0%
GGCAAGGCATATAAAAGTCA+TGG - chr7_1:72613326-72613345 Msa1036250:intron 40.0%
TGCTAAGGATCACTATTCTC+CGG + chr7_1:72613565-72613584 None:intergenic 40.0%
! TGGCTGATGAGTATGAGTTT+TGG + chr7_1:72613781-72613800 None:intergenic 40.0%
CAGATTCTGCTCTTTCCGTT+TGG + chr7_1:72609971-72609990 None:intergenic 45.0%
CAAACGGAAAGAGCAGAATC+TGG - chr7_1:72609969-72609988 Msa1036250:three_prime_UTR 45.0%
AGCACGGCAACTATAGAAGT+TGG + chr7_1:72610216-72610235 None:intergenic 45.0%
GAGTCCTTCAAGAGCTTGAA+TGG + chr7_1:72610540-72610559 None:intergenic 45.0%
CTTGTGAATTTGGGTGGTAG+TGG + chr7_1:72610692-72610711 None:intergenic 45.0%
CACTACCACCCAAATTCACA+AGG - chr7_1:72610690-72610709 Msa1036250:intron 45.0%
ACACTTGCATGGAAACTGAG+TGG - chr7_1:72611108-72611127 Msa1036250:intron 45.0%
ACATATCATGCCCCACTAAC+TGG - chr7_1:72611215-72611234 Msa1036250:intron 45.0%
GTGACAGAATGTGTCTTAGG+TGG + chr7_1:72611613-72611632 None:intergenic 45.0%
GTATGGTTCAGTCCAGCATA+TGG + chr7_1:72611736-72611755 None:intergenic 45.0%
! AATGTAGTGGAGGCTTGTAG+AGG + chr7_1:72612195-72612214 None:intergenic 45.0%
TACAAGCCTCCACTACATTG+TGG - chr7_1:72612196-72612215 Msa1036250:intron 45.0%
ACCCCTTGAATATACCACTG+AGG - chr7_1:72612254-72612273 Msa1036250:intron 45.0%
CCCTCAGTGGTATATTCAAG+GGG + chr7_1:72612258-72612277 None:intergenic 45.0%
CCCCTTGAATATACCACTGA+GGG - chr7_1:72612255-72612274 Msa1036250:intron 45.0%
CCCCTCAGTGGTATATTCAA+GGG + chr7_1:72612259-72612278 None:intergenic 45.0%
CCCTTGAATATACCACTGAG+GGG - chr7_1:72612256-72612275 Msa1036250:intron 45.0%
CCTTGAATATACCACTGAGG+GGG - chr7_1:72612257-72612276 Msa1036250:intron 45.0%
CTGCCAACAGAAATGGTTTC+GGG + chr7_1:72612575-72612594 None:intergenic 45.0%
GAGGAATGTGCGGAAAACAA+GGG + chr7_1:72612602-72612621 None:intergenic 45.0%
TGAGGAATGTGCGGAAAACA+AGG + chr7_1:72612603-72612622 None:intergenic 45.0%
GGATCATCAATTGATGCTGG+AGG + chr7_1:72613090-72613109 None:intergenic 45.0%
TAGCATGGTTGCTTCAGTGA+TGG + chr7_1:72613111-72613130 None:intergenic 45.0%
GTTCATATACCATGCAGGCA+AGG - chr7_1:72613310-72613329 Msa1036250:intron 45.0%
TGGAACAGACTGTCTCTAGA+CGG - chr7_1:72613346-72613365 Msa1036250:intron 45.0%
GGGAGAAGTGGTTTGACTAA+AGG - chr7_1:72613684-72613703 Msa1036250:CDS 45.0%
GCAGCATACGAAATGTGTGT+GGG + chr7_1:72613759-72613778 None:intergenic 45.0%
!! AATAATATTAGTATATAATA+GGG + chr7_1:72613964-72613983 None:intergenic 5.0%
!! AAATAATATTAGTATATAAT+AGG + chr7_1:72613965-72613984 None:intergenic 5.0%
!! TATTATATACTAATATTATT+TGG - chr7_1:72613964-72613983 Msa1036250:five_prime_UTR 5.0%
AAAACCGTTCAAGCTGCCAC+AGG - chr7_1:72610342-72610361 Msa1036250:three_prime_UTR 50.0%
TGAACCTGTGGCAGCTTGAA+CGG + chr7_1:72610349-72610368 None:intergenic 50.0%
!! TGGCTATGAGAGCCTTGTTG+AGG - chr7_1:72610463-72610482 Msa1036250:three_prime_UTR 50.0%
CCATAGTAGCTGCCTCAACA+AGG + chr7_1:72610478-72610497 None:intergenic 50.0%
CCTTGTTGAGGCAGCTACTA+TGG - chr7_1:72610475-72610494 Msa1036250:three_prime_UTR 50.0%
! TTGTATGGTTCGGCGCCAAT+AGG - chr7_1:72611663-72611682 Msa1036250:intron 50.0%
TCTGGGTATGCCAGTCAACA+TGG - chr7_1:72612017-72612036 Msa1036250:intron 50.0%
AAGCCTCCACTACATTGTGG+AGG - chr7_1:72612199-72612218 Msa1036250:intron 50.0%
TGACCTCCACAATGTAGTGG+AGG + chr7_1:72612205-72612224 None:intergenic 50.0%
TGCTGACCTCCACAATGTAG+TGG + chr7_1:72612208-72612227 None:intergenic 50.0%
CCCCCTCAGTGGTATATTCA+AGG + chr7_1:72612260-72612279 None:intergenic 50.0%
TTGCAAATTTGCCCCCTCAG+TGG + chr7_1:72612271-72612290 None:intergenic 50.0%
AGGGATCACGCCTCATACAT+TGG + chr7_1:72612432-72612451 None:intergenic 50.0%
GAATGTGCGGAAAACAAGGG+TGG + chr7_1:72612599-72612618 None:intergenic 50.0%
CAGACTGTCTCTAGACGGTA+TGG - chr7_1:72613351-72613370 Msa1036250:intron 50.0%
CTGTCTCTAGACGGTATGGA+TGG - chr7_1:72613355-72613374 Msa1036250:CDS 50.0%
!! TGTAGGCTTTAAGGGCAGCA+AGG - chr7_1:72613713-72613732 Msa1036250:CDS 50.0%
GGCAGCATACGAAATGTGTG+TGG + chr7_1:72613760-72613779 None:intergenic 50.0%
TTGGTTACTTGGGCCATCCG+AGG - chr7_1:72610748-72610767 Msa1036250:intron 55.0%
GGGTGGTCTGCCAACAGAAA+TGG + chr7_1:72612582-72612601 None:intergenic 55.0%
!! GGCTTTAAGGGCAGCAAGGA+TGG - chr7_1:72613717-72613736 Msa1036250:CDS 55.0%
AGGAGAGTGGCGTAGCCGTA+AGG + chr7_1:72611805-72611824 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 72609949 72613989 72609949 ID=Msa1036250;Name=Msa1036250
chr7_1 mRNA 72609949 72613989 72609949 ID=Msa1036250-mRNA-1;Parent=Msa1036250;Name=Msa1036250-mRNA-1;_AED=0.14;_eAED=0.14;_QI=180|0.75|1|1|0.75|0.6|5|571|177
chr7_1 exon 72609949 72610070 72609949 ID=Msa1036250-mRNA-1:exon:17742;Parent=Msa1036250-mRNA-1
chr7_1 exon 72610097 72610611 72610097 ID=Msa1036250-mRNA-1:exon:17741;Parent=Msa1036250-mRNA-1
chr7_1 exon 72613169 72613261 72613169 ID=Msa1036250-mRNA-1:exon:17740;Parent=Msa1036250-mRNA-1
chr7_1 exon 72613355 72613494 72613355 ID=Msa1036250-mRNA-1:exon:17739;Parent=Msa1036250-mRNA-1
chr7_1 exon 72613575 72613989 72613575 ID=Msa1036250-mRNA-1:exon:17738;Parent=Msa1036250-mRNA-1
chr7_1 five_prime_UTR 72613810 72613989 72613810 ID=Msa1036250-mRNA-1:five_prime_utr;Parent=Msa1036250-mRNA-1
chr7_1 CDS 72613575 72613809 72613575 ID=Msa1036250-mRNA-1:cds;Parent=Msa1036250-mRNA-1
chr7_1 CDS 72613355 72613494 72613355 ID=Msa1036250-mRNA-1:cds;Parent=Msa1036250-mRNA-1
chr7_1 CDS 72613169 72613261 72613169 ID=Msa1036250-mRNA-1:cds;Parent=Msa1036250-mRNA-1
chr7_1 CDS 72610546 72610611 72610546 ID=Msa1036250-mRNA-1:cds;Parent=Msa1036250-mRNA-1
chr7_1 three_prime_UTR 72610097 72610545 72610097 ID=Msa1036250-mRNA-1:three_prime_utr;Parent=Msa1036250-mRNA-1
chr7_1 three_prime_UTR 72609949 72610070 72609949 ID=Msa1036250-mRNA-1:three_prime_utr;Parent=Msa1036250-mRNA-1
Gene Sequence

>Msa1036250

ATGGAAACTAATGTTTTCAGGCAGAACAGAATTTCAACACTAACTTCAACTCACTACAACCTCATCAAACATAAACCTCAACATCCAACTTCTATAGTTGCCGTGCTTAGAAAGCCTTCAAATCATGACATTACAGAAGAAACAGCAAAAAGTACTACTACTAATGTCTACAAAGATAACTGGTTTGATCTCATAGCAATAAACCATTTATCAAAAACCGTTCAAGCTGCCACAGGACTCAGAAACAATAAGAGTGGCTATGAGAGCCTTGTTGAGGCAGCTACTATGGCAAAACAAAAATTTAATGCTATTCAACAGCAAGAGGTTACCATTCAAGCTCTTGAAGGACTCTTCCCACAGTTTGTATTTGCATTGATAAAGAAACAGCCACTACCACCCAAATTCACAAGGGAATTTTTTGCAATTATCACCACTATGTTCTTTACTTGGTTACTTGGGCCATCCGAGGCAAGGCATATAAAAGTCATGGAACAGACTGTCTCTAGACGGTATGGATGGAAGAAGTCATTTTAG

Protein sequence

>Msa1036250

METNVFRQNRISTLTSTHYNLIKHKPQHPTSIVAVLRKPSNHDITEETAKSTTTNVYKDNWFDLIAINHLSKTVQAATGLRNNKSGYESLVEAATMAKQKFNAIQQQEVTIQALEGLFPQFVFALIKKQPLPPKFTREFFAIITTMFFTWLLGPSEARHIKVMEQTVSRRYGWKKSF*