AlfalfaGEDB | MsG0380014552.01

M. sativa cultivar ZhongmuNo.1 / MsG0380014552.01

KEGG: -
GO: GO:0016020 GO:0016760 GO:0030244 GOLD domain
PFAM: PF01105 PF03552

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014552.01.T01	RDX61630.1	70.158	821	184	11	39	809	92	901	0	1137

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014552.01.T01	Q651X6	52.456	631	269	6	26	634	80	701	0	686

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014552.01.T01	A0A371E6H8	70.158	821	184	11	39	809	92	901	0.0	1137

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047883.01	MsG0380014552.01	0.815884	7.354729e-52	5.132810e-49
MsG0080047884.01	MsG0380014552.01	0.833003	6.843631e-56	7.779743e-53
MsG0080047885.01	MsG0380014552.01	0.832092	1.151641e-55	1.274059e-52
MsG0080048068.01	MsG0380014552.01	0.803316	3.694602e-49	1.850769e-46
MsG0080048506.01	MsG0380014552.01	-0.810219	1.284988e-50	7.700859e-48
MsG0080048507.01	MsG0380014552.01	-0.802804	4.714374e-49	2.331096e-46
MsG0080048528.01	MsG0380014552.01	0.805841	1.098385e-49	5.871752e-47
MsG0080048727.01	MsG0380014552.01	0.812593	3.921641e-51	2.503690e-48
MsG0080048773.01	MsG0380014552.01	0.839185	1.843029e-57	2.525441e-54
MsG0080048780.01	MsG0380014552.01	0.804680	1.923524e-49	9.979811e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014552.01.T01	MTR_3g060220	91.319	599	49	1	39	637	91	686	0.0	1129
MsG0380014552.01.T01	MTR_3g060220	91.319	599	49	1	39	637	90	685	0.0	1129
MsG0380014552.01.T01	MTR_3g060240	88.000	600	71	1	39	637	90	689	0.0	1094
MsG0380014552.01.T01	MTR_3g060280	68.605	602	178	5	39	637	100	693	0.0	860
MsG0380014552.01.T01	MTR_3g060280	70.664	467	127	4	39	502	100	559	0.0	682
MsG0380014552.01.T01	MTR_3g060280	67.475	495	147	5	39	530	100	583	0.0	682
MsG0380014552.01.T01	MTR_3g060280	72.206	349	87	4	39	384	100	441	4.74e-176	515
MsG0380014552.01.T01	MTR_4g088225	36.989	611	357	12	40	637	96	691	6.54e-123	387
MsG0380014552.01.T01	MTR_4g088225	36.989	611	357	12	40	637	96	691	8.29e-123	387
MsG0380014552.01.T01	MTR_1g073740	34.740	616	373	7	43	643	100	701	1.09e-121	384

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014552.01.T01	AT1G55850	55.464	604	249	5	39	639	104	690	0.0	681
MsG0380014552.01.T01	AT4G23990	41.531	614	330	10	43	635	117	722	9.31e-158	479
MsG0380014552.01.T01	AT4G24000	39.804	613	335	10	43	635	95	693	8.07e-153	465
MsG0380014552.01.T01	AT4G24010	40.696	575	328	6	43	611	98	665	9.33e-149	456
MsG0380014552.01.T01	AT5G17420	34.158	606	330	10	38	577	309	911	3.71e-115	375
MsG0380014552.01.T01	AT4G23990	38.596	513	288	9	144	635	2	508	1.72e-112	354
MsG0380014552.01.T01	AT2G25540	33.923	622	326	12	38	577	326	944	4.83e-110	362
MsG0380014552.01.T01	AT4G24000	36.523	512	293	9	144	635	2	501	1.44e-108	343
MsG0380014552.01.T01	AT4G18780	32.470	656	351	11	38	614	255	897	1.60e-107	353
MsG0380014552.01.T01	AT2G32540	33.089	683	358	20	43	656	92	744	4.33e-105	341

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Find 158 sgRNAs with CRISPR-Local

Find 641 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCTTTAGCATTATTT+GGG	0.341215	3:+56434634	None:intergenic
AAACAATTCTCAATCTCTAA+GGG	0.548566	3:-56431363	MsG0380014552.01.T01:CDS
AAACACATCATGGGGAAAAG+AGG	0.543820	3:-56430851	MsG0380014552.01.T01:intron
AAATATGCATCTGGCGACCT+AGG	0.526722	3:+56434675	None:intergenic
AACAAGTGTTAGAATATTTG+AGG	0.481568	3:-56429540	MsG0380014552.01.T01:CDS
AAGATATGAGAAGGAAATTA+TGG	0.297367	3:-56429666	MsG0380014552.01.T01:CDS
AAGGCATTTCCTTGTTCCCA+CGG	0.533920	3:-56430024	MsG0380014552.01.T01:CDS
AAGGTCTTGAAATATGCATC+TGG	0.493142	3:+56434666	None:intergenic
AAGGTTGGTGGAATGAGTTA+AGG	0.570742	3:-56429814	MsG0380014552.01.T01:CDS
AATAGAAAATGCATCCAAGT+TGG	0.504773	3:-56432122	MsG0380014552.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAACGAGGATTTATGCAT+CGG	-	Chr3:56427015-56427034	MsG0380014552.01.T01:CDS	30.0%
AAATTTGACTCATCAACTAG+GGG	+	Chr3:56430081-56430100	None:intergenic	30.0%
AAGAATAAGTGCAAACTACT+TGG	-	Chr3:56427630-56427649	MsG0380014552.01.T01:intron	30.0%
AATAGAAAATGCATCCAAGT+TGG	-	Chr3:56433112-56433131	MsG0380014552.01.T01:intron	30.0%
AATTTCAACTTGTGAAGTCA+AGG	+	Chr3:56432782-56432801	None:intergenic	30.0%
ACAAAAAATGACTTATACGG+TGG	-	Chr3:56433974-56433993	MsG0380014552.01.T01:intron	30.0%
ACAAGGACATAATTTAACCA+AGG	+	Chr3:56435876-56435895	None:intergenic	30.0%
ACAATTGTTGTATACAGTGA+CGG	+	Chr3:56432812-56432831	None:intergenic	30.0%
ACAGTTTACATCAAAGATAG+AGG	-	Chr3:56437820-56437839	MsG0380014552.01.T01:intron	30.0%
ACATTCAGTATGAACAACAT+TGG	-	Chr3:56438270-56438289	MsG0380014552.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	56426859	56438397	56426859	ID=MsG0380014552.01;Name=MsG0380014552.01
Chr3	mRNA	56426859	56438397	56426859	ID=MsG0380014552.01.T01;Parent=MsG0380014552.01;Name=MsG0380014552.01.T01;_AED=0.49;_eAED=0.52;_QI=0\|0.6\|0.54\|1\|1\|0.90\|11\|0\|833
Chr3	exon	56438285	56438397	56438285	ID=MsG0380014552.01.T01:exon:3069;Parent=MsG0380014552.01.T01
Chr3	exon	56434623	56434935	56434623	ID=MsG0380014552.01.T01:exon:3068;Parent=MsG0380014552.01.T01
Chr3	exon	56432030	56432170	56432030	ID=MsG0380014552.01.T01:exon:3067;Parent=MsG0380014552.01.T01
Chr3	exon	56431691	56431819	56431691	ID=MsG0380014552.01.T01:exon:3066;Parent=MsG0380014552.01.T01
Chr3	exon	56431238	56431450	56431238	ID=MsG0380014552.01.T01:exon:3065;Parent=MsG0380014552.01.T01
Chr3	exon	56430852	56431091	56430852	ID=MsG0380014552.01.T01:exon:3064;Parent=MsG0380014552.01.T01
Chr3	exon	56430024	56430371	56430024	ID=MsG0380014552.01.T01:exon:3063;Parent=MsG0380014552.01.T01
Chr3	exon	56429516	56429930	56429516	ID=MsG0380014552.01.T01:exon:3062;Parent=MsG0380014552.01.T01
Chr3	exon	56428103	56428323	56428103	ID=MsG0380014552.01.T01:exon:3061;Parent=MsG0380014552.01.T01
Chr3	exon	56427156	56427342	56427156	ID=MsG0380014552.01.T01:exon:3060;Parent=MsG0380014552.01.T01
Chr3	exon	56426859	56427040	56426859	ID=MsG0380014552.01.T01:exon:3059;Parent=MsG0380014552.01.T01
Chr3	CDS	56438285	56438397	56438285	ID=MsG0380014552.01.T01:cds;Parent=MsG0380014552.01.T01
Chr3	CDS	56434623	56434935	56434623	ID=MsG0380014552.01.T01:cds;Parent=MsG0380014552.01.T01
Chr3	CDS	56432030	56432170	56432030	ID=MsG0380014552.01.T01:cds;Parent=MsG0380014552.01.T01
Chr3	CDS	56431691	56431819	56431691	ID=MsG0380014552.01.T01:cds;Parent=MsG0380014552.01.T01
Chr3	CDS	56431238	56431450	56431238	ID=MsG0380014552.01.T01:cds;Parent=MsG0380014552.01.T01
Chr3	CDS	56430852	56431091	56430852	ID=MsG0380014552.01.T01:cds;Parent=MsG0380014552.01.T01
Chr3	CDS	56430024	56430371	56430024	ID=MsG0380014552.01.T01:cds;Parent=MsG0380014552.01.T01
Chr3	CDS	56429516	56429930	56429516	ID=MsG0380014552.01.T01:cds;Parent=MsG0380014552.01.T01
Chr3	CDS	56428103	56428323	56428103	ID=MsG0380014552.01.T01:cds;Parent=MsG0380014552.01.T01
Chr3	CDS	56427156	56427342	56427156	ID=MsG0380014552.01.T01:cds;Parent=MsG0380014552.01.T01
Chr3	CDS	56426859	56427040	56426859	ID=MsG0380014552.01.T01:cds;Parent=MsG0380014552.01.T01

Gene Sequence

>MsG0380014552.01.T01

ATGGAAATCGGAAAATCAAGACATCCGAAGATCAATGAAGACTTTGGGAAGATCAAGAATGATGATTCAAGAGGCCTCAGAAGACATTATATAGGGAGAAATTATGTTCCCGGATATGAGAACATGCTACCCAAAGTGGACATATTTGTGTGTACGGCAAATCCAGAGATTGAACCACCAATAATGGTGATCAACACAGTATTATCTGTGATGGCATATGATTATCCAACAGAGAAGCTTAGTGTGTATCTTTCAGATGATGGTGGATCAGATATTACATTTTATGCTCTCTTAGAGGCTTCTAAATTTGCTAAGCATTGGTTGCCATTTTGTAAGAGATTCAAGGTAGAACCTAGGTCGCCAGATGCATATTTCAAGACCTTAGACACTTACCCAAATAATGCTAAAGAGTTTTTGGCCATCAAGAGAATGTACCAAGATATGGAAAGTCGAATAGAAAATGCATCCAAGTTGGGTAAAGTACCGAAGGAAGCATACTCAAATCATAAGGAATTTTCTCAATGGGATTCATATTCATCAAGACGTGACCATGACACAATTCTTCAAATACTGCTTCATAGAAAGGACAATGCGAGAGATGAAGATGGGTTTGTTATGCCCACCTTGGTATATTTGGCTCGTGAGAAAAGACCCCAATTTCATCATAACTTCAAAGCTGGAGCTATGAATTCATTGATAAGGGTGTCATCAATGATTAGCAATGGGAAAATAATTCTCAATGTAGATTGTGACATGTACTCAAACAATTCTCAATCTCTAAGGGATGCACTTTGCTTCTTCATGGATGAAGAAAAGGGACATGAAATTGCCTTTGTGCAGGCTCCTCAGGGCATTGCAAATATCACAAAAAATGACTTATACGGTGGTTATTTTCGTATACCTCATGAGGTGGATTTACATGGCTTTGATGGATTAGGTGGGCCCATGTATATTGGAACTGGTTGCTTTCACAGAAGAGATGCACTATGTGGAAGAAAGTATAGTGATCTATACAAGATTGATTGGAAGAATGTAAATGATGAAAATATTGATCATATGATAAAAGAAGAAAGTTTGCAAGAGCTAGAAGAAAAATCAAAGACTCTTGCAAGTTGTACCTATGAGGAAAACACATCATGGGGAAAAGAGATGGGACTACTATATGGTTGTGTAGTGGAGGATATAATAACAGGATTATCTATTTTATGCAAAGGATGGACATCAATATATTATAATCCAACAAGAAAAGCTTTCTTGGGTTTGACTCCAACAACCTTGCCAGAATCACTTGTTCAACATAAGAGATGGTCTGAAGGACAATTTCAAGTTGCACTTTCCAAGTTCAGTCCTATTTGGTACTCTTTTGGATTGATCAGTCCAGGCCTTCAAATGTCTTATTGTTACTATAATCTATGGGTGTTAAACTCCTTTCCAACTATGTATTATTGCATCATCCCTTCACTATATCTCCTCAAAGGCATTTCCTTGTTCCCACGGATTTCAAGTCCATGGTTCATACCTTTTGCATATGTCATAGTTGGCGATTCGACATATTGTTTGTTAGAGTTTTTGAGGGTAGGAGGTACAATGAAAGGTTGGTGGAATGAGTTAAGGATGTGGGTTTACAAGAGAACAAGTTCTTACCTTTTTGCTTTTGTTGATGCCATGTTGAAGTTTTTTGGATTTTCAAATTCAGCTTTCATAATATCTGCTAAGGTAGCTGAAGAAAATATTTCACAAAGATATGAGAAGGAAATTATGGAGTTTGGAAACTCATCTCCAATGCTCACTTTATTGGCTACACTTGCAATGCTGAATCTGTTTTGTCTTGTTGGGATGTTGTTAAGGAAGGTTGTGTTAAGTGGAACAAGTGTTAGAATATTTGAGGCAATGTTATTGCAAGTTTTACTATTGATAAAAATGAAGGTGGGACCACCCAATGTTGCCATTGCAATGGCAATCTTATTATTATGCAACATGAATGGTGTTATTGGGATTAGATTTGTGATTGATAGAGAAGAATGTTTCTCTCATTATGTTCAATATGAAGGCGATGCAGTACATGCTTCATTTGTTGTGATAAGTGTTACTGATTCAACATGGCATTTAACTCAAGAAGGTTTAGATCTTATGGTTAGAGGACCTAATGGTGATCAAATTCGAGAATTTCGGGATAGAACAAGTGAGAAATTCGACTTTGTAGCTCATACCAGAGGACCGTATCGCTTCTGCTTCACTAACAAGTCACCTTATCGTGAAAAAATCGACTTTGATGTTCATTCTAACCATTTTTCAACCTTTGAACAACATGCACAAGATGAGCATTTTACTCCAATGTTAGATCAAATAATAAAGTTAGAGGAAGCTCTTTTCAACATTCAGTATGAACAACATTGGCTTGAGGCTCAAACAGAACGTCAATCAATAGGTAAGTCACGTCACCATTCATATTTTTACTTTTTAGCATCCTTACTCAGACACCGGATAAGATTCTCACATTAA

Protein sequence

>MsG0380014552.01.T01

MEIGKSRHPKINEDFGKIKNDDSRGLRRHYIGRNYVPGYENMLPKVDIFVCTANPEIEPPIMVINTVLSVMAYDYPTEKLSVYLSDDGGSDITFYALLEASKFAKHWLPFCKRFKVEPRSPDAYFKTLDTYPNNAKEFLAIKRMYQDMESRIENASKLGKVPKEAYSNHKEFSQWDSYSSRRDHDTILQILLHRKDNARDEDGFVMPTLVYLAREKRPQFHHNFKAGAMNSLIRVSSMISNGKIILNVDCDMYSNNSQSLRDALCFFMDEEKGHEIAFVQAPQGIANITKNDLYGGYFRIPHEVDLHGFDGLGGPMYIGTGCFHRRDALCGRKYSDLYKIDWKNVNDENIDHMIKEESLQELEEKSKTLASCTYEENTSWGKEMGLLYGCVVEDIITGLSILCKGWTSIYYNPTRKAFLGLTPTTLPESLVQHKRWSEGQFQVALSKFSPIWYSFGLISPGLQMSYCYYNLWVLNSFPTMYYCIIPSLYLLKGISLFPRISSPWFIPFAYVIVGDSTYCLLEFLRVGGTMKGWWNELRMWVYKRTSSYLFAFVDAMLKFFGFSNSAFIISAKVAEENISQRYEKEIMEFGNSSPMLTLLATLAMLNLFCLVGMLLRKVVLSGTSVRIFEAMLLQVLLLIKMKVGPPNVAIAMAILLLCNMNGVIGIRFVIDREECFSHYVQYEGDAVHASFVVISVTDSTWHLTQEGLDLMVRGPNGDQIREFRDRTSEKFDFVAHTRGPYRFCFTNKSPYREKIDFDVHSNHFSTFEQHAQDEHFTPMLDQIIKLEEALFNIQYEQHWLEAQTERQSIGKSRHHSYFYFLASLLRHRIRFSH*