AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280007334.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007334.01.T03 MTR_8g064490 100.000 29 0 0 1 29 390 418 1.78e-15 67.0
MsG0280007334.01.T02 MTR_8g064490 100.000 68 0 0 16 83 351 418 8.81e-45 149
MsG0280007334.01.T01 MTR_8g064490 95.294 85 4 0 23 107 334 418 7.13e-53 171
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007334.01.T02 AT1G60230 72.059 68 19 0 16 83 363 430 4.22e-30 110
MsG0280007334.01.T01 AT1G60230 60.185 108 42 1 1 107 323 430 2.38e-38 134

Find 56 sgRNAs with CRISPR-Local

Find 237 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTAAACATAACGCCCTTTC+TGG 0.148184 2:-13836769 None:intergenic
CAGTTTATACTTTCGATTAT+AGG 0.198463 2:-13833905 None:intergenic
TTTATATTTGATTAAATATT+GGG 0.234970 2:+13836816 MsG0280007334.01.T01:three_prime_UTR
GTTCAACGTGTTTCTTTATA+AGG 0.236088 2:+13836516 MsG0280007334.01.T01:three_prime_UTR
ATGAAGTCATATGTGTATTA+TGG 0.254486 2:-13836573 None:intergenic
CGCCTCTACTCGGTCTTAAA+AGG 0.259812 2:-13836399 None:intergenic
AAAGCTGAGAGGTGCAAATA+TGG 0.265773 2:-13836675 None:intergenic
CTTTCCTTCAAACAAATATA+AGG 0.284467 2:+13833958 MsG0280007334.01.T01:CDS
TGTTTAATTATTATTTGTAT+TGG 0.343253 2:+13836784 MsG0280007334.01.T01:three_prime_UTR
CTGCCTCAGCTAGCATATTT+CGG 0.348127 2:-13836366 None:intergenic
ACTTAGTAAATAAACACATT+AGG 0.380788 2:-13836896 None:intergenic
ATTTACAAATTCCTCTTCTC+TGG 0.381780 2:+13837018 MsG0280007334.01.T01:three_prime_UTR
AGAACCTTATATTTGTTTGA+AGG 0.384473 2:-13833962 None:intergenic
TTGAACTTCCAACCGCCATT+TGG 0.395896 2:-13836499 None:intergenic
CTCTTTCGTTGGTCTGAAGA+AGG 0.400964 2:-13836326 None:intergenic
ATCATCCTTTCCTCTTTCGT+TGG 0.411585 2:-13836337 None:intergenic
CTATAATCGAAAGTATAAAC+TGG 0.419979 2:+13833906 MsG0280007334.01.T01:CDS
TTTGAGTATGTGATGCTTGA+AGG 0.435255 2:+13833986 MsG0280007334.01.T01:CDS
TTCATATTCCTGAAGTTGGT+GGG 0.455803 2:+13836730 MsG0280007334.01.T01:three_prime_UTR
GATGGCTGCATGTGTCAGTT+AGG 0.460284 2:+13836429 MsG0280007334.01.T01:CDS
CGAAATATGCTAGCTGAGGC+AGG 0.465809 2:+13836367 MsG0280007334.01.T01:CDS
ACAAAGCTTGTGAAAGCATA+CGG 0.471360 2:-13836962 None:intergenic
CACGTAGCATTGGAGCTTGA+AGG 0.481182 2:-13836463 None:intergenic
CATTGGAGCTTGAAGGGTGC+CGG 0.482811 2:-13836456 None:intergenic
AGGCTAATCGAGCTTGTAAA+GGG 0.484951 2:+13836256 MsG0280007334.01.T01:CDS
TTGCATGAAATAACCAGAAA+GGG 0.487081 2:+13836756 MsG0280007334.01.T01:three_prime_UTR
GAGATTAGATTGATCTTGCA+AGG 0.488380 2:-13836283 None:intergenic
GTTCATATTCCTGAAGTTGG+TGG 0.494070 2:+13836729 MsG0280007334.01.T01:three_prime_UTR
AGGGTTCATATTCCTGAAGT+TGG 0.506762 2:+13836726 MsG0280007334.01.T01:three_prime_UTR
TTTGCATGAAATAACCAGAA+AGG 0.506777 2:+13836755 MsG0280007334.01.T01:three_prime_UTR
ATCTCATTCAATCCACATAG+TGG 0.516285 2:+13836301 MsG0280007334.01.T01:CDS
GAGGCTAATCGAGCTTGTAA+AGG 0.517029 2:+13836255 MsG0280007334.01.T01:CDS
TGCTGTGGTACACGTAGCAT+TGG 0.517770 2:-13836473 None:intergenic
CTTCTTCAGACCAACGAAAG+AGG 0.518641 2:+13836327 MsG0280007334.01.T01:CDS
AAGCTGAGAGGTGCAAATAT+GGG 0.520251 2:-13836674 None:intergenic
ATCTGATCATCGCCTCTACT+CGG 0.529771 2:-13836409 None:intergenic
TTTCTCAACAACCAGAGAAG+AGG 0.540952 2:-13837029 None:intergenic
CATGTGTCAGTTAGGCAAGC+CGG 0.542083 2:+13836437 MsG0280007334.01.T01:exon
CAGCAATTCCAAATGGCGGT+TGG 0.563127 2:+13836491 MsG0280007334.01.T01:three_prime_UTR
ACGTAGCATTGGAGCTTGAA+GGG 0.566712 2:-13836462 None:intergenic
TGTACCACAGCAATTCCAAA+TGG 0.569297 2:+13836484 MsG0280007334.01.T01:three_prime_UTR
GAGTAGAGGCGATGATCAGA+TGG 0.574917 2:+13836411 MsG0280007334.01.T01:CDS
ATGCTTGAAGGAATTATGAC+AGG 0.594319 2:+13833998 MsG0280007334.01.T01:CDS
AAATATTGGGAAAAGTCATG+TGG 0.601803 2:+13836829 MsG0280007334.01.T01:three_prime_UTR
CTGAAGAAGGATCCACTATG+TGG 0.603142 2:-13836313 None:intergenic
AGATTAGATTGATCTTGCAA+GGG 0.609560 2:-13836282 None:intergenic
ACCGCCATTTGGAATTGCTG+TGG 0.616173 2:-13836488 None:intergenic
GCTTCTTGAGACACTTCGTG+AGG 0.629024 2:+13833933 MsG0280007334.01.T01:CDS
TCAGACCAACGAAAGAGGAA+AGG 0.631199 2:+13836332 MsG0280007334.01.T01:CDS
ATAGCAATGAAGATGCAAAG+AGG 0.658881 2:+13836236 MsG0280007334.01.T01:intron
ATTCCGAAATATGCTAGCTG+AGG 0.675146 2:+13836363 MsG0280007334.01.T01:CDS
TCAATAATTATAAAGCTGAG+AGG 0.682404 2:-13836686 None:intergenic
ACCACAGCAATTCCAAATGG+CGG 0.686804 2:+13836487 MsG0280007334.01.T01:three_prime_UTR
ATGGAATGAAGTGTCCGTGG+TGG 0.692468 2:+13836608 MsG0280007334.01.T01:three_prime_UTR
GGGATGGAATGAAGTGTCCG+TGG 0.707468 2:+13836605 MsG0280007334.01.T01:three_prime_UTR
TCTCAGTATTCTGTCCACCA+CGG 0.738491 2:-13836622 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATACCATATAAAATAAAA+GGG - Chr2:13835875-13835894 None:intergenic 10.0%
!! TATATATAATATAAGTTTAG+AGG + Chr2:13835982-13836001 MsG0280007334.01.T01:intron 10.0%
!! TGTTTAATTATTATTTGTAT+TGG + Chr2:13836784-13836803 MsG0280007334.01.T01:three_prime_UTR 10.0%
!! AAAATGTGTTGAATAATAAA+AGG - Chr2:13835122-13835141 None:intergenic 15.0%
!! AAATGTGTTGAATAATAAAA+GGG - Chr2:13835121-13835140 None:intergenic 15.0%
!! CATATACCATATAAAATAAA+AGG - Chr2:13835876-13835895 None:intergenic 15.0%
!! TAAAACTACACATATTATAT+GGG + Chr2:13835576-13835595 MsG0280007334.01.T01:intron 15.0%
!! TTATAGGTATTATGTATATA+TGG - Chr2:13834186-13834205 None:intergenic 15.0%
!!! TATTGATAATTTTATAAACG+TGG + Chr2:13836703-13836722 MsG0280007334.01.T01:three_prime_UTR 15.0%
!!! TTTATTTTATATGGTATATG+TGG + Chr2:13835876-13835895 MsG0280007334.01.T01:intron 15.0%
!! AAAATAAGAAGTTAGAGATA+GGG + Chr2:13835911-13835930 MsG0280007334.01.T01:intron 20.0%
!! AATGTGTAAGTGTTTAAATT+GGG + Chr2:13834378-13834397 MsG0280007334.01.T01:intron 20.0%
!! ACTTAGTAAATAAACACATT+AGG - Chr2:13836899-13836918 None:intergenic 20.0%
!! GTAAAACTACACATATTATA+TGG + Chr2:13835575-13835594 MsG0280007334.01.T01:intron 20.0%
!! TTTATTTCAATCTCATAATG+AGG + Chr2:13835294-13835313 MsG0280007334.01.T01:intron 20.0%
!!! AAAAGCCCTTTTATTTTATA+TGG + Chr2:13835867-13835886 MsG0280007334.01.T01:intron 20.0%
!!! ACAATTTTTGACAAAAACTT+TGG - Chr2:13836875-13836894 None:intergenic 20.0%
!!! TATAAAATAAAAGGGCTTTT+AGG - Chr2:13835867-13835886 None:intergenic 20.0%
! AAAATAAATCATAACAGCGT+TGG - Chr2:13835208-13835227 None:intergenic 25.0%
! AAATAAATCATAACAGCGTT+GGG - Chr2:13835207-13835226 None:intergenic 25.0%
! AAATAAGAAGTTAGAGATAG+GGG + Chr2:13835912-13835931 MsG0280007334.01.T01:intron 25.0%
! AACCATGATAAATGAAAAAC+AGG + Chr2:13835697-13835716 MsG0280007334.01.T01:intron 25.0%
! AACCCTCAAATTTAAACATA+AGG - Chr2:13835267-13835286 None:intergenic 25.0%
! AATAATGCAAGAATTTGAGT+AGG + Chr2:13834297-13834316 MsG0280007334.01.T01:intron 25.0%
! AGAACCTTATATTTGTTTGA+AGG - Chr2:13833965-13833984 None:intergenic 25.0%
! ATAAGATTATGTTTCAGTTG+AGG + Chr2:13834111-13834130 MsG0280007334.01.T01:intron 25.0%
! ATAATGCAAGAATTTGAGTA+GGG + Chr2:13834298-13834317 MsG0280007334.01.T01:intron 25.0%
! ATGAAGTCATATGTGTATTA+TGG - Chr2:13836576-13836595 None:intergenic 25.0%
! ATTAAAAACTCAACTAGATC+TGG + Chr2:13834971-13834990 MsG0280007334.01.T01:intron 25.0%
! ATTAAACCTAAATCAGTTGA+AGG - Chr2:13834823-13834842 None:intergenic 25.0%
! CAATGTGTAAGTGTTTAAAT+TGG + Chr2:13834377-13834396 MsG0280007334.01.T01:intron 25.0%
! CACAAGATAAAGGTTATTAT+AGG - Chr2:13834202-13834221 None:intergenic 25.0%
! CAGTTTATACTTTCGATTAT+AGG - Chr2:13833908-13833927 None:intergenic 25.0%
! CTAAAATACCTCAATAAAAG+AGG + Chr2:13835241-13835260 MsG0280007334.01.T01:intron 25.0%
! CTTTCCTTCAAACAAATATA+AGG + Chr2:13833958-13833977 MsG0280007334.01.T01:CDS 25.0%
! GAAAATAAGAAGTTAGAGAT+AGG + Chr2:13835910-13835929 MsG0280007334.01.T01:intron 25.0%
! GGAATTTACTGTTCTTATAT+GGG + Chr2:13834887-13834906 MsG0280007334.01.T01:intron 25.0%
! GTTTGAAAAAGACATACAAT+TGG + Chr2:13835722-13835741 MsG0280007334.01.T01:intron 25.0%
! TCAATAATTATAAAGCTGAG+AGG - Chr2:13836689-13836708 None:intergenic 25.0%
! TTAAAAACTCAACTAGATCT+GGG + Chr2:13834972-13834991 MsG0280007334.01.T01:intron 25.0%
! TTAAACCTAAATCAGTTGAA+GGG - Chr2:13834822-13834841 None:intergenic 25.0%
! TTATGGTATGAACTACAATA+AGG - Chr2:13836107-13836126 None:intergenic 25.0%
! TTCCATGCAAAATTTACAAA+AGG + Chr2:13834145-13834164 MsG0280007334.01.T01:intron 25.0%
!! ATATGACTTCATTTTGAATC+TGG + Chr2:13836584-13836603 MsG0280007334.01.T01:three_prime_UTR 25.0%
!! CTATAATCGAAAGTATAAAC+TGG + Chr2:13833906-13833925 MsG0280007334.01.T01:CDS 25.0%
!! CTTTTTCTTATATATGAGAC+CGG + Chr2:13834925-13834944 MsG0280007334.01.T01:intron 25.0%
!! GATAATTTTATAAACGTGGA+GGG + Chr2:13836707-13836726 MsG0280007334.01.T01:three_prime_UTR 25.0%
!! TATGACTTCATTTTGAATCT+GGG + Chr2:13836585-13836604 MsG0280007334.01.T01:three_prime_UTR 25.0%
!! TGATAATTTTATAAACGTGG+AGG + Chr2:13836706-13836725 MsG0280007334.01.T01:three_prime_UTR 25.0%
!! TTCCTTTTGTAAATTTTGCA+TGG - Chr2:13834150-13834169 None:intergenic 25.0%
!!! ATAATATGTGTAGTTTTACG+TGG - Chr2:13835574-13835593 None:intergenic 25.0%
!!! CTCTTTTATTGAGGTATTTT+AGG - Chr2:13835243-13835262 None:intergenic 25.0%
!!! TACCTGTTTTTCATTTATCA+TGG - Chr2:13835702-13835721 None:intergenic 25.0%
!!! TGCAAACAAGTTATGTTTTT+TGG + Chr2:13834738-13834757 MsG0280007334.01.T01:intron 25.0%
AAATATTGGGAAAAGTCATG+TGG + Chr2:13836829-13836848 MsG0280007334.01.T01:three_prime_UTR 30.0%
AAGAAAGTCATATGCTTTCA+CGG - Chr2:13835943-13835962 None:intergenic 30.0%
AAGAATTCAAGATTAGAAGG+AGG + Chr2:13834516-13834535 MsG0280007334.01.T01:intron 30.0%
AATAAGAAGTTAGAGATAGG+GGG + Chr2:13835913-13835932 MsG0280007334.01.T01:intron 30.0%
AGAAAGAATTGCAAGCATTA+TGG - Chr2:13836124-13836143 None:intergenic 30.0%
AGATTAGATTGATCTTGCAA+GGG - Chr2:13836285-13836304 None:intergenic 30.0%
AGCAAGCAAATATTGAACAA+GGG + Chr2:13835797-13835816 MsG0280007334.01.T01:intron 30.0%
ATAAATTGCCCAACAGTTAT+AGG + Chr2:13834263-13834282 MsG0280007334.01.T01:intron 30.0%
ATGGTATATATAGTTGGACT+AGG + Chr2:13834564-13834583 MsG0280007334.01.T01:intron 30.0%
ATTTACAAATTCCTCTTCTC+TGG + Chr2:13837018-13837037 MsG0280007334.01.T01:three_prime_UTR 30.0%
CCTAAGAATTCAAGATTAGA+AGG + Chr2:13834513-13834532 MsG0280007334.01.T01:intron 30.0%
CCTTCTAATCTTGAATTCTT+AGG - Chr2:13834516-13834535 None:intergenic 30.0%
GAATAATAAAAGGGAGTGAA+TGG - Chr2:13835112-13835131 None:intergenic 30.0%
GGGAATTTACTGTTCTTATA+TGG + Chr2:13834886-13834905 MsG0280007334.01.T01:intron 30.0%
GTAATATAAATTACTCCCTC+CGG - Chr2:13834947-13834966 None:intergenic 30.0%
GTTCAACGTGTTTCTTTATA+AGG + Chr2:13836516-13836535 MsG0280007334.01.T01:three_prime_UTR 30.0%
TAATGCAAGAATTTGAGTAG+GGG + Chr2:13834299-13834318 MsG0280007334.01.T01:intron 30.0%
TTGCATGAAATAACCAGAAA+GGG + Chr2:13836756-13836775 MsG0280007334.01.T01:three_prime_UTR 30.0%
TTTACTGTTCTTATATGGGT+TGG + Chr2:13834891-13834910 MsG0280007334.01.T01:intron 30.0%
TTTGCATGAAATAACCAGAA+AGG + Chr2:13836755-13836774 MsG0280007334.01.T01:three_prime_UTR 30.0%
! AATTACCCTTCAACTGATTT+AGG + Chr2:13834814-13834833 MsG0280007334.01.T01:intron 30.0%
! AGGCCTTATGTTTAAATTTG+AGG + Chr2:13835261-13835280 MsG0280007334.01.T01:intron 30.0%
! GGCCTTATGTTTAAATTTGA+GGG + Chr2:13835262-13835281 MsG0280007334.01.T01:intron 30.0%
! TAAAAAACCACTGCGTATTT+TGG - Chr2:13836049-13836068 None:intergenic 30.0%
! TAATAACCCTTTTACTCTCA+TGG + Chr2:13834847-13834866 MsG0280007334.01.T01:intron 30.0%
! TACTAGCGTATATTTGAGAT+CGG - Chr2:13834715-13834734 None:intergenic 30.0%
! TTAAGCAATTTTTCTCTCTC+CGG - Chr2:13835773-13835792 None:intergenic 30.0%
! TTTTGTCGTCAAAATTGGAA+TGG + Chr2:13834401-13834420 MsG0280007334.01.T01:intron 30.0%
!! ATGGAAGTGTTGAAAAAGAT+GGG + Chr2:13834539-13834558 MsG0280007334.01.T01:intron 30.0%
AACAGTTATAGGAGTTGAGT+TGG + Chr2:13834274-13834293 MsG0280007334.01.T01:intron 35.0%
AACTCAACTCCTATAACTGT+TGG - Chr2:13834275-13834294 None:intergenic 35.0%
AATGCAAGAATTTGAGTAGG+GGG + Chr2:13834300-13834319 MsG0280007334.01.T01:intron 35.0%
ACAAAAGGAATTTGTGAGCT+GGG + Chr2:13834160-13834179 MsG0280007334.01.T01:intron 35.0%
ACACATATTATATGGGCCTA+TGG + Chr2:13835583-13835602 MsG0280007334.01.T01:intron 35.0%
ACATATTATATGGGCCTATG+GGG + Chr2:13835585-13835604 MsG0280007334.01.T01:intron 35.0%
ACATTCCATGTCATAAGACT+TGG + Chr2:13836160-13836179 MsG0280007334.01.T01:intron 35.0%
ACTCAACTCCTATAACTGTT+GGG - Chr2:13834274-13834293 None:intergenic 35.0%
ACTTGTTCCATGAGAGTAAA+AGG - Chr2:13834857-13834876 None:intergenic 35.0%
AGAACAGTAAATTCCCCTTA+TGG - Chr2:13834882-13834901 None:intergenic 35.0%
AGCATGCTATTGACAAGAAT+GGG + Chr2:13835444-13835463 MsG0280007334.01.T01:intron 35.0%
ATAAGAAGTTAGAGATAGGG+GGG + Chr2:13835914-13835933 MsG0280007334.01.T01:intron 35.0%
ATAGCAATGAAGATGCAAAG+AGG + Chr2:13836236-13836255 MsG0280007334.01.T01:intron 35.0%
ATCTCATTCAATCCACATAG+TGG + Chr2:13836301-13836320 MsG0280007334.01.T01:CDS 35.0%
ATGCTTGAAGGAATTATGAC+AGG + Chr2:13833998-13834017 MsG0280007334.01.T01:CDS 35.0%
ATGGAACAAGTTTCCATAAG+GGG + Chr2:13834866-13834885 MsG0280007334.01.T01:intron 35.0%
ATTAAACATAACGCCCTTTC+TGG - Chr2:13836772-13836791 None:intergenic 35.0%
ATTCAAGATTAGAAGGAGGA+TGG + Chr2:13834520-13834539 MsG0280007334.01.T01:intron 35.0%
CAAGCAAATATTGAACAAGG+GGG + Chr2:13835799-13835818 MsG0280007334.01.T01:intron 35.0%
CACATATTATATGGGCCTAT+GGG + Chr2:13835584-13835603 MsG0280007334.01.T01:intron 35.0%
CATGGAACAAGTTTCCATAA+GGG + Chr2:13834865-13834884 MsG0280007334.01.T01:intron 35.0%
CTTGTTCCATGAGAGTAAAA+GGG - Chr2:13834856-13834875 None:intergenic 35.0%
GAAACATGACAAAAGACACT+GGG - Chr2:13834087-13834106 None:intergenic 35.0%
GAAGAGGATTAACACTTGAT+AGG + Chr2:13834469-13834488 MsG0280007334.01.T01:intron 35.0%
GAGATTAGATTGATCTTGCA+AGG - Chr2:13836286-13836305 None:intergenic 35.0%
GAGCAAGCAAATATTGAACA+AGG + Chr2:13835796-13835815 MsG0280007334.01.T01:intron 35.0%
GCAAGCAAATATTGAACAAG+GGG + Chr2:13835798-13835817 MsG0280007334.01.T01:intron 35.0%
GCACAAACTACTTAATGAAG+AGG + Chr2:13834453-13834472 MsG0280007334.01.T01:intron 35.0%
GCATCTTGTTCTTATTGATG+GGG - Chr2:13835552-13835571 None:intergenic 35.0%
GGCATCTTGTTCTTATTGAT+GGG - Chr2:13835553-13835572 None:intergenic 35.0%
GTCATTTGTGCACAAGATAA+AGG - Chr2:13834212-13834231 None:intergenic 35.0%
TAATATGGCTCGCAGTTATT+CGG + Chr2:13835475-13835494 MsG0280007334.01.T01:intron 35.0%
TACAAAAGGAATTTGTGAGC+TGG + Chr2:13834159-13834178 MsG0280007334.01.T01:intron 35.0%
TAGCATGCTATTGACAAGAA+TGG + Chr2:13835443-13835462 MsG0280007334.01.T01:intron 35.0%
TCATGCTAATAGCAGTGAAA+GGG - Chr2:13835160-13835179 None:intergenic 35.0%
TCATGGAACAAGTTTCCATA+AGG + Chr2:13834864-13834883 MsG0280007334.01.T01:intron 35.0%
TCATTTATCATGGTTGCTCT+CGG - Chr2:13835692-13835711 None:intergenic 35.0%
TGAAACATGACAAAAGACAC+TGG - Chr2:13834088-13834107 None:intergenic 35.0%
TGAAGGAATTATGACAGGTT+AGG + Chr2:13834003-13834022 MsG0280007334.01.T01:intron 35.0%
TGGCATCTTGTTCTTATTGA+TGG - Chr2:13835554-13835573 None:intergenic 35.0%
TTCTTATATATGAGACCGGA+GGG + Chr2:13834929-13834948 MsG0280007334.01.T01:intron 35.0%
TTTCACCACAAAAAGTCAAC+CGG + Chr2:13835022-13835041 MsG0280007334.01.T01:intron 35.0%
TTTCTTATATATGAGACCGG+AGG + Chr2:13834928-13834947 MsG0280007334.01.T01:intron 35.0%
TTTGAGTATGTGATGCTTGA+AGG + Chr2:13833986-13834005 MsG0280007334.01.T01:CDS 35.0%
TTTGTGAATTTAAGCCCCAT+AGG - Chr2:13835602-13835621 None:intergenic 35.0%
! ACAAAGCTTGTGAAAGCATA+CGG - Chr2:13836965-13836984 None:intergenic 35.0%
! ACATAAGGCCTCTTTTATTG+AGG - Chr2:13835252-13835271 None:intergenic 35.0%
! ACTTCATTTTGAATCTGGGA+TGG + Chr2:13836589-13836608 MsG0280007334.01.T01:three_prime_UTR 35.0%
! AGTCTAAGCAAGTTTTCATC+AGG + Chr2:13836916-13836935 MsG0280007334.01.T01:three_prime_UTR 35.0%
! ATGGTTGGATTTGGATCTTT+TGG - Chr2:13835077-13835096 None:intergenic 35.0%
! GAATGGGGAAAGGTATAATA+TGG + Chr2:13835460-13835479 MsG0280007334.01.T01:intron 35.0%
! TGGGTGATGGTATATATAGT+TGG + Chr2:13834558-13834577 MsG0280007334.01.T01:intron 35.0%
! TTCATATTCCTGAAGTTGGT+GGG + Chr2:13836730-13836749 MsG0280007334.01.T01:three_prime_UTR 35.0%
! TTCTGAAAGAGGTTTATCGT+AGG + Chr2:13835745-13835764 MsG0280007334.01.T01:intron 35.0%
!! CATACAATTGGTTCTGAAAG+AGG + Chr2:13835734-13835753 MsG0280007334.01.T01:intron 35.0%
!! GATGGAAGTGTTGAAAAAGA+TGG + Chr2:13834538-13834557 MsG0280007334.01.T01:intron 35.0%
!! TAAGGAAAGCCTTTTTCACT+AGG - Chr2:13836089-13836108 None:intergenic 35.0%
!! TTGGGTTTTGTCGTCAAAAT+TGG + Chr2:13834396-13834415 MsG0280007334.01.T01:intron 35.0%
AAAAGGGAGTGAATGGATGA+AGG - Chr2:13835105-13835124 None:intergenic 40.0%
AAAGGGAGTGAATGGATGAA+GGG - Chr2:13835104-13835123 None:intergenic 40.0%
AAGGGTGAAATGGTTGGATT+TGG - Chr2:13835086-13835105 None:intergenic 40.0%
ACTCCAAAAATGCTACAGTG+AGG + Chr2:13834634-13834653 MsG0280007334.01.T01:intron 40.0%
AGGCTAATCGAGCTTGTAAA+GGG + Chr2:13836256-13836275 MsG0280007334.01.T01:CDS 40.0%
AGGGTTCATATTCCTGAAGT+TGG + Chr2:13836726-13836745 MsG0280007334.01.T01:three_prime_UTR 40.0%
ATCATCCTTTCCTCTTTCGT+TGG - Chr2:13836340-13836359 None:intergenic 40.0%
ATTCCGAAATATGCTAGCTG+AGG + Chr2:13836363-13836382 MsG0280007334.01.T01:CDS 40.0%
CCAACTCAAGCAATAAGTGA+AGG - Chr2:13834036-13834055 None:intergenic 40.0%
CCTTCACTTATTGCTTGAGT+TGG + Chr2:13834033-13834052 MsG0280007334.01.T01:intron 40.0%
CGTCAAAATTGGAATGGTGT+AGG + Chr2:13834407-13834426 MsG0280007334.01.T01:intron 40.0%
CTATTGACAAGAATGGGGAA+AGG + Chr2:13835450-13835469 MsG0280007334.01.T01:intron 40.0%
CTCATGCTAATAGCAGTGAA+AGG - Chr2:13835161-13835180 None:intergenic 40.0%
GAGGATTAACACTTGATAGG+AGG + Chr2:13834472-13834491 MsG0280007334.01.T01:intron 40.0%
GCATGCTATTGACAAGAATG+GGG + Chr2:13835445-13835464 MsG0280007334.01.T01:intron 40.0%
GGTATATGTGGAGAATCGAA+AGG + Chr2:13835888-13835907 MsG0280007334.01.T01:intron 40.0%
GTGTTGAAAAAGATGGGTGA+TGG + Chr2:13834545-13834564 MsG0280007334.01.T01:intron 40.0%
GTTCATATTCCTGAAGTTGG+TGG + Chr2:13836729-13836748 MsG0280007334.01.T01:three_prime_UTR 40.0%
TGAATGGATGAAGGGTGAAA+TGG - Chr2:13835096-13835115 None:intergenic 40.0%
TGGAATGGTGTAGGAACAAA+AGG + Chr2:13834416-13834435 MsG0280007334.01.T01:intron 40.0%
TGTACCACAGCAATTCCAAA+TGG + Chr2:13836484-13836503 MsG0280007334.01.T01:three_prime_UTR 40.0%
! AAAGCTGAGAGGTGCAAATA+TGG - Chr2:13836678-13836697 None:intergenic 40.0%
! AAGCTGAGAGGTGCAAATAT+GGG - Chr2:13836677-13836696 None:intergenic 40.0%
! AGCGTATATTTGAGATCGGA+GGG - Chr2:13834711-13834730 None:intergenic 40.0%
! CTAAGAGCATGACAAATGAG+TGG + Chr2:13835512-13835531 MsG0280007334.01.T01:intron 40.0%
! CTACCTCACTGTAGCATTTT+TGG - Chr2:13834640-13834659 None:intergenic 40.0%
! TAGCGTATATTTGAGATCGG+AGG - Chr2:13834712-13834731 None:intergenic 40.0%
! TCTGGGACTCATATCTCAAT+TGG - Chr2:13834596-13834615 None:intergenic 40.0%
! TGGATTTGTTCATGGCTAGA+TGG + Chr2:13835045-13835064 MsG0280007334.01.T01:intron 40.0%
!!! CACTGTAGCATTTTTGGAGT+CGG - Chr2:13834634-13834653 None:intergenic 40.0%
AAGAGGTTTATCGTAGGCTC+CGG + Chr2:13835751-13835770 MsG0280007334.01.T01:intron 45.0%
ACCACAGCAATTCCAAATGG+CGG + Chr2:13836487-13836506 MsG0280007334.01.T01:three_prime_UTR 45.0%
AGCAGTGAAAGGGAAGGAAA+AGG - Chr2:13835150-13835169 None:intergenic 45.0%
ATCTGATCATCGCCTCTACT+CGG - Chr2:13836412-13836431 None:intergenic 45.0%
ATGAGAGCAGTTCAATGCAG+TGG - Chr2:13835374-13835393 None:intergenic 45.0%
CTAGCCATGAACAAATCCAC+CGG - Chr2:13835044-13835063 None:intergenic 45.0%
CTGAAGAAGGATCCACTATG+TGG - Chr2:13836316-13836335 None:intergenic 45.0%
CTGCCTCAGCTAGCATATTT+CGG - Chr2:13836369-13836388 None:intergenic 45.0%
CTTCTTCAGACCAACGAAAG+AGG + Chr2:13836327-13836346 MsG0280007334.01.T01:CDS 45.0%
GAGATATGAGTCCCAGATAG+TGG + Chr2:13834599-13834618 MsG0280007334.01.T01:intron 45.0%
GAGGCTAATCGAGCTTGTAA+AGG + Chr2:13836255-13836274 MsG0280007334.01.T01:CDS 45.0%
GATGATAGAGGCCAACTAGT+GGG - Chr2:13835343-13835362 None:intergenic 45.0%
GCTAATAGCAGTGAAAGGGA+AGG - Chr2:13835156-13835175 None:intergenic 45.0%
GGCTTTACACTCCACTATCT+GGG - Chr2:13834613-13834632 None:intergenic 45.0%
GTGGTCATAGCTGATGATAG+AGG - Chr2:13835355-13835374 None:intergenic 45.0%
TCAGACCAACGAAAGAGGAA+AGG + Chr2:13836332-13836351 MsG0280007334.01.T01:CDS 45.0%
TCTCAGTATTCTGTCCACCA+CGG - Chr2:13836625-13836644 None:intergenic 45.0%
TGATGATAGAGGCCAACTAG+TGG - Chr2:13835344-13835363 None:intergenic 45.0%
TGCAAAAACCCACCAACTTC+AGG - Chr2:13836741-13836760 None:intergenic 45.0%
TGGATGAAGGGTGAAATGGT+TGG - Chr2:13835092-13835111 None:intergenic 45.0%
TTGAACTTCCAACCGCCATT+TGG - Chr2:13836502-13836521 None:intergenic 45.0%
! ACGTAGCATTGGAGCTTGAA+GGG - Chr2:13836465-13836484 None:intergenic 45.0%
! ATCTGGGACTTACTAGTGAG+AGG + Chr2:13834988-13835007 MsG0280007334.01.T01:intron 45.0%
! CGCATCCAAGTCTTATGACA+TGG - Chr2:13836168-13836187 None:intergenic 45.0%
! CTCTTTCGTTGGTCTGAAGA+AGG - Chr2:13836329-13836348 None:intergenic 45.0%
! TCAACCGGTGGATTTGTTCA+TGG + Chr2:13835037-13835056 MsG0280007334.01.T01:intron 45.0%
!! AAAGCCTTTTTCACTAGGCG+GGG - Chr2:13836084-13836103 None:intergenic 45.0%
!! ATCCACCGGTTGACTTTTTG+TGG - Chr2:13835030-13835049 None:intergenic 45.0%
!! GAAAGCCTTTTTCACTAGGC+GGG - Chr2:13836085-13836104 None:intergenic 45.0%
!! GGAAAGCCTTTTTCACTAGG+CGG - Chr2:13836086-13836105 None:intergenic 45.0%
!! TAGTGGGTTTGCTGGTGTTA+CGG - Chr2:13835327-13835346 None:intergenic 45.0%
!!! GTCCTTTTAAGACCGAGTAG+AGG + Chr2:13836397-13836416 MsG0280007334.01.T01:CDS 45.0%
!! TTTATATTTGATTAAATATT+GGG + Chr2:13836816-13836835 MsG0280007334.01.T01:three_prime_UTR 5.0%
!!! TTTTATATTTGATTAAATAT+TGG + Chr2:13836815-13836834 MsG0280007334.01.T01:three_prime_UTR 5.0%
ACACCAGCAAACCCACTAGT+TGG + Chr2:13835329-13835348 MsG0280007334.01.T01:intron 50.0%
CACCACAAAAAGTCAACCGG+TGG + Chr2:13835025-13835044 MsG0280007334.01.T01:intron 50.0%
CAGCAATTCCAAATGGCGGT+TGG + Chr2:13836491-13836510 MsG0280007334.01.T01:three_prime_UTR 50.0%
CATGTGTCAGTTAGGCAAGC+CGG + Chr2:13836437-13836456 MsG0280007334.01.T01:exon 50.0%
CGAAATATGCTAGCTGAGGC+AGG + Chr2:13836367-13836386 MsG0280007334.01.T01:CDS 50.0%
CGCCTCTACTCGGTCTTAAA+AGG - Chr2:13836402-13836421 None:intergenic 50.0%
CGGCTTTACACTCCACTATC+TGG - Chr2:13834614-13834633 None:intergenic 50.0%
GAGTAGAGGCGATGATCAGA+TGG + Chr2:13836411-13836430 MsG0280007334.01.T01:CDS 50.0%
GATGGCTGCATGTGTCAGTT+AGG + Chr2:13836429-13836448 MsG0280007334.01.T01:CDS 50.0%
GCTTCTTGAGACACTTCGTG+AGG + Chr2:13833933-13833952 MsG0280007334.01.T01:CDS 50.0%
TCACGACTAGTGTGTGGACA+CGG + Chr2:13835822-13835841 MsG0280007334.01.T01:intron 50.0%
TGCTGTGGTACACGTAGCAT+TGG - Chr2:13836476-13836495 None:intergenic 50.0%
! ACCGCCATTTGGAATTGCTG+TGG - Chr2:13836491-13836510 None:intergenic 50.0%
! ATGGAATGAAGTGTCCGTGG+TGG + Chr2:13836608-13836627 MsG0280007334.01.T01:three_prime_UTR 50.0%
! CACGTAGCATTGGAGCTTGA+AGG - Chr2:13836466-13836485 None:intergenic 50.0%
ACTAGTGTGTGGACACGGTG+AGG + Chr2:13835827-13835846 MsG0280007334.01.T01:intron 55.0%
CCAGAGGCCAAAATACGCAG+TGG + Chr2:13836039-13836058 MsG0280007334.01.T01:intron 55.0%
CCAGTTTCAGAGCTCTCCAG+AGG + Chr2:13836023-13836042 MsG0280007334.01.T01:intron 55.0%
CCATCCCCGCCTAGTGAAAA+AGG + Chr2:13836077-13836096 MsG0280007334.01.T01:intron 55.0%
TGCATGTCCTCTAGCAGCCA+GGG + Chr2:13835396-13835415 MsG0280007334.01.T01:intron 55.0%
! CATTGGAGCTTGAAGGGTGC+CGG - Chr2:13836459-13836478 None:intergenic 55.0%
! GGGATGGAATGAAGTGTCCG+TGG + Chr2:13836605-13836624 MsG0280007334.01.T01:three_prime_UTR 55.0%
!! AGGCCAACTAGTGGGTTTGC+TGG - Chr2:13835335-13835354 None:intergenic 55.0%
!! CCTCTGGAGAGCTCTGAAAC+TGG - Chr2:13836026-13836045 None:intergenic 55.0%
!! CCTTTTTCACTAGGCGGGGA+TGG - Chr2:13836080-13836099 None:intergenic 55.0%
!!! CCACTGCGTATTTTGGCCTC+TGG - Chr2:13836042-13836061 None:intergenic 55.0%
AGGGGGTCACGACTAGTGTG+TGG + Chr2:13835816-13835835 MsG0280007334.01.T01:intron 60.0%
CTGCATGTCCTCTAGCAGCC+AGG + Chr2:13835395-13835414 MsG0280007334.01.T01:intron 60.0%
GCATGTCCTCTAGCAGCCAG+GGG + Chr2:13835397-13835416 MsG0280007334.01.T01:intron 60.0%
TCTAGCAGCCAGGGGTTGCT+CGG + Chr2:13835405-13835424 MsG0280007334.01.T01:intron 60.0%
CAGTGTAGCCGAGCAACCCC+TGG - Chr2:13835416-13835435 None:intergenic 65.0%
GAGCAACCCCTGGCTGCTAG+AGG - Chr2:13835406-13835425 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 13833902 13837045 13833902 ID=MsG0280007334.01;Name=MsG0280007334.01
Chr2 mRNA 13833902 13837045 13833902 ID=MsG0280007334.01.T01;Parent=MsG0280007334.01;Name=MsG0280007334.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0.87|0.88|1|0.12|0.22|9|595|109
Chr2 exon 13836240 13837045 13836240 ID=MsG0280007334.01.T01:exon:9515;Parent=MsG0280007334.01.T01
Chr2 exon 13833902 13834020 13833902 ID=MsG0280007334.01.T01:exon:9514;Parent=MsG0280007334.01.T01
Chr2 CDS 13833902 13834020 13833902 ID=MsG0280007334.01.T01:cds;Parent=MsG0280007334.01.T01
Chr2 CDS 13836240 13836450 13836240 ID=MsG0280007334.01.T01:cds;Parent=MsG0280007334.01.T01
Chr2 three_prime_UTR 13836451 13837045 13836451 ID=MsG0280007334.01.T01:three_prime_utr;Parent=MsG0280007334.01.T01
Chr2 mRNA 13836193 13836450 13836193 ID=MsG0280007334.01.T02;Parent=MsG0280007334.01;Name=MsG0280007334.01.T02;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|0|1|0|85
Chr2 exon 13836193 13836450 13836193 ID=MsG0280007334.01.T02:exon:9516;Parent=MsG0280007334.01.T02
Chr2 CDS 13836193 13836450 13836193 ID=MsG0280007334.01.T02:cds;Parent=MsG0280007334.01.T02
Chr2 mRNA 13836355 13836450 13836355 ID=MsG0280007334.01.T03;Parent=MsG0280007334.01;Name=MsG0280007334.01.T03;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|0|1|0|31
Chr2 exon 13836355 13836450 13836355 ID=MsG0280007334.01.T03:exon:9517;Parent=MsG0280007334.01.T03
Chr2 CDS 13836355 13836450 13836355 ID=MsG0280007334.01.T03:cds;Parent=MsG0280007334.01.T03
Gene Sequence

>MsG0280007334.01.T03

ATGATTGAATTCCGAAATATGCTAGCTGAGGCAGGATGTGTAGTCCTTTTAAGACCGAGTAGAGGCGATGATCAGATGGCTGCATGTGTCAGTTAG

>MsG0280007334.01.T02

ATGTATGCACTCTTATTGTGTAAAAATAAGTTTTTTCGTCTATATAGCAATGAAGATGCAAAGAGGCTAATCGAGCTTGTAAAGGGCATCCCTTGCAAGATCAATCTAATCTCATTCAATCCACATAGTGGATCCTTCTTCAGACCAACGAAAGAGGAAAGGATGATTGAATTCCGAAATATGCTAGCTGAGGCAGGATGTGTAGTCCTTTTAAGACCGAGTAGAGGCGATGATCAGATGGCTGCATGTGTCAGTTAG

>MsG0280007334.01.T01

ATGCCTATAATCGAAAGTATAAACTGGACTTGCTTCTTGAGACACTTCGTGAGGAGCTTTCCTTCAAACAAATATAAGGTTCTATTTGAGTATGTGATGCTTGAAGGAATTATGACAGGCAATGAAGATGCAAAGAGGCTAATCGAGCTTGTAAAGGGCATCCCTTGCAAGATCAATCTAATCTCATTCAATCCACATAGTGGATCCTTCTTCAGACCAACGAAAGAGGAAAGGATGATTGAATTCCGAAATATGCTAGCTGAGGCAGGATGTGTAGTCCTTTTAAGACCGAGTAGAGGCGATGATCAGATGGCTGCATGTGTCAGTTAG

Protein sequence

>MsG0280007334.01.T03

MIEFRNMLAEAGCVVLLRPSRGDDQMAACVS*

>MsG0280007334.01.T02

MYALLLCKNKFFRLYSNEDAKRLIELVKGIPCKINLISFNPHSGSFFRPTKEERMIEFRNMLAEAGCVVLLRPSRGDDQMAACVS*

>MsG0280007334.01.T01

MPIIESINWTCFLRHFVRSFPSNKYKVLFEYVMLEGIMTGNEDAKRLIELVKGIPCKINLISFNPHSGSFFRPTKEERMIEFRNMLAEAGCVVLLRPSRGDDQMAACVS*