AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480022130.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022130.01.T01 MTR_4g084940 93.515 478 28 3 1 477 1 476 0.0 913
MsG0480022130.01.T01 MTR_4g107210 21.429 308 229 5 168 467 76 378 1.07e-15 80.5
MsG0480022130.01.T01 MTR_1g040765 25.364 343 194 12 172 471 87 410 3.46e-14 75.5
MsG0480022130.01.T01 MTR_7g118240 24.188 277 197 7 197 465 114 385 5.93e-13 71.2
MsG0480022130.01.T01 MTR_1g112240 23.715 253 185 5 229 477 173 421 1.19e-11 67.4
MsG0480022130.01.T01 MTR_2g036560 26.754 228 152 7 249 465 147 370 6.86e-11 65.1
MsG0480022130.01.T01 MTR_1g108270 26.007 273 170 6 213 468 105 362 7.07e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022130.01.T01 AT2G01860 59.368 475 178 6 3 473 5 468 0.0 552
MsG0480022130.01.T01 AT2G38420 23.474 213 153 2 267 474 185 392 9.09e-13 70.5
MsG0480022130.01.T01 AT2G39230 24.365 197 148 1 267 463 525 720 4.08e-12 69.3
MsG0480022130.01.T01 AT3G16010 24.176 273 195 7 204 469 348 615 4.68e-12 68.9
MsG0480022130.01.T01 AT1G10910 20.134 298 230 4 168 460 70 364 4.12e-11 65.9
MsG0480022130.01.T01 AT1G10910 20.134 298 230 4 168 460 70 364 4.98e-11 65.5

Find 134 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACGAATTTGTCACTGTTTC+TGG 0.059459 4:-68643185 None:intergenic
ATACTGAACATACCATTATT+AGG 0.195428 4:-68643293 None:intergenic
TTACTGCTAAAGTGGTTATT+TGG 0.203440 4:-68643365 None:intergenic
GGCCTCAACGATTGAGGTTT+TGG 0.214337 4:+68643998 MsG0480022130.01.T01:CDS
TGTCGATGATTCTTGGAAAA+TGG 0.260235 4:+68643841 MsG0480022130.01.T01:CDS
TTTAACCTCGAAAAGTTTAC+TGG 0.276842 4:+68644047 MsG0480022130.01.T01:CDS
TTTCCCGGATGATTGGATTC+TGG 0.280393 4:+68643977 MsG0480022130.01.T01:CDS
ACAACATGTCTGTATCTATC+AGG 0.288568 4:-68644227 None:intergenic
TCGTTGACGATAAAGGAATT+AGG 0.289391 4:+68643891 MsG0480022130.01.T01:CDS
ATGGCTACACTAAACCCTTA+TGG 0.298116 4:+68644835 MsG0480022130.01.T01:exon
TACTGAACATACCATTATTA+GGG 0.321781 4:-68643292 None:intergenic
ATATAGATACTGATGTTGTT+TGG 0.325108 4:+68643565 MsG0480022130.01.T01:CDS
GGTTTCTACTCGCGGTTCTA+TGG 0.325275 4:+68643740 MsG0480022130.01.T01:CDS
ACGAATTTGTCACTGTTTCT+GGG 0.331459 4:-68643184 None:intergenic
TTATATGATAAACAAGAAAA+AGG 0.339327 4:-68643216 None:intergenic
GGTGTTGGAGGCGTTGATTA+AGG 0.345507 4:+68644085 MsG0480022130.01.T01:CDS
TTCTTTATCGTTGACGATAA+AGG 0.348162 4:+68643884 MsG0480022130.01.T01:CDS
TATAGATACTGATGTTGTTT+GGG 0.352556 4:+68643566 MsG0480022130.01.T01:CDS
CCTCGAAAAGTTTACTGGTT+TGG 0.353494 4:+68644052 MsG0480022130.01.T01:CDS
GAGAGGCATTGGAGTTAGTC+TGG 0.363021 4:+68644453 MsG0480022130.01.T01:CDS
AACCTTCAACTCATGCTTCC+CGG 0.364644 4:-68644021 None:intergenic
ACACCTTCCAAGCAAGTCTA+AGG 0.375796 4:-68644127 None:intergenic
TCTAATCTAAACCCTAATAA+TGG 0.379903 4:+68643281 MsG0480022130.01.T01:exon
GTGTTGGAGGCGTTGATTAA+GGG 0.382503 4:+68644086 MsG0480022130.01.T01:CDS
AGCTTATCGTGTGGTAATAA+AGG 0.383460 4:+68644511 MsG0480022130.01.T01:CDS
TGGCTACACTAAACCCTTAT+GGG 0.385371 4:+68644836 MsG0480022130.01.T01:exon
TTTAGTTGGTTCAAACAGTC+TGG 0.394258 4:+68644365 MsG0480022130.01.T01:CDS
TTTGGCGAGTCGAGGGGTGT+TGG 0.404623 4:+68644070 MsG0480022130.01.T01:CDS
CCAACTCCGGCAGCGTTTCC+CGG 0.408947 4:-68643153 None:intergenic
TTGTTGAGAGCTTGTTTAGT+TGG 0.414935 4:+68644351 MsG0480022130.01.T01:CDS
GAAGATGTGTCGATGATTCT+TGG 0.425103 4:+68643834 MsG0480022130.01.T01:CDS
ATTTGAATTTACTGCTAAAG+TGG 0.432988 4:-68643373 None:intergenic
TGATCTGAATTTGAATTCAC+AGG 0.433356 4:+68644280 MsG0480022130.01.T01:CDS
TGAACAAATGGAAGCCCATA+AGG 0.433810 4:-68644850 None:intergenic
TGTTCAGTGGTTGTGGTGGT+AGG 0.433936 4:-68643486 None:intergenic
GATAAGCTACCTCCAGAGTT+TGG 0.439352 4:+68643441 MsG0480022130.01.T01:CDS
GCAAAACTGATAACGGAACT+TGG 0.440351 4:+68644197 MsG0480022130.01.T01:CDS
GAAGAAATACAGAGAGGCAT+TGG 0.446326 4:+68644442 MsG0480022130.01.T01:CDS
GGATATCGAAGATTCTTTGT+TGG 0.448278 4:-68643411 None:intergenic
AACCCATGATGATGCTGATA+AGG 0.449475 4:+68643509 MsG0480022130.01.T01:CDS
ATGGGTTTGTTCAGTGGTTG+TGG 0.451509 4:-68643493 None:intergenic
GATGTTTGTTGATGAACAAA+TGG 0.455921 4:-68644862 None:intergenic
TAGGGTTTAGATTAGAAATG+TGG 0.457839 4:-68643274 None:intergenic
GGTTGGCGAGAGAGATTAGT+AGG 0.458215 4:+68643799 MsG0480022130.01.T01:CDS
CCTCATAAGATTCGTCCGTT+GGG 0.460361 4:+68643687 MsG0480022130.01.T01:CDS
TCCTCATAAGATTCGTCCGT+TGG 0.462568 4:+68643686 MsG0480022130.01.T01:CDS
GGCCGGGAAGCATGAGTTGA+AGG 0.466259 4:+68644019 MsG0480022130.01.T01:CDS
GAGGGAACCTTAGACTTGCT+TGG 0.466587 4:+68644120 MsG0480022130.01.T01:CDS
TTTGCACTTCGCTATCCTCC+CGG 0.467846 4:-68644651 None:intergenic
TAGAAAGGATAAAAGATTGT+TGG 0.468927 4:+68644160 MsG0480022130.01.T01:CDS
GAGGCCAGAATCCAATCATC+CGG 0.470465 4:-68643981 None:intergenic
ATCATCGACACATCTTCATC+TGG 0.470598 4:-68643828 None:intergenic
CCGGGAAACGCTGCCGGAGT+TGG 0.472617 4:+68643153 None:intergenic
GGTGTTGGCAATTGCTAGAA+AGG 0.475824 4:+68644145 MsG0480022130.01.T01:CDS
AATGAAAGTCTGTGCTAAGA+TGG 0.477988 4:+68644316 MsG0480022130.01.T01:CDS
AACTCACCGGGAAACGCTGC+CGG 0.480051 4:+68643147 None:intergenic
TTTATTACCACACGATAAGC+TGG 0.480966 4:-68644509 None:intergenic
CTGCATAAAGTTCTTCCCAA+TGG 0.481760 4:-68643339 None:intergenic
AGGGTTTAGATTAGAAATGT+GGG 0.483413 4:-68643273 None:intergenic
TGAGGAGACGGAAGAGGAAG+AGG 0.485182 4:-68643669 None:intergenic
CTTGAAATTTACATGGCCTC+CGG 0.485261 4:+68644632 MsG0480022130.01.T01:CDS
ATCATCATGGGTTTGTTCAG+TGG 0.486354 4:-68643499 None:intergenic
GTCCTTGTATAAACCAAAAG+TGG 0.488197 4:-68644606 None:intergenic
GATTCTGGCCTCAACGATTG+AGG 0.488712 4:+68643992 MsG0480022130.01.T01:CDS
CTTTCCCGATCCAATTTCCC+CGG 0.489714 4:-68643645 None:intergenic
TTGAAATTTACATGGCCTCC+GGG 0.494533 4:+68644633 MsG0480022130.01.T01:CDS
AATGTTTGTAGAGCTCTCTC+AGG 0.497832 4:-68643927 None:intergenic
TAACGTGAAACCTGCTATCT+CGG 0.498092 4:-68644690 None:intergenic
GTCGATGATTCTTGGAAAAT+GGG 0.501504 4:+68643842 MsG0480022130.01.T01:CDS
GGCGAGTCGAGGGGTGTTGG+AGG 0.501818 4:+68644073 MsG0480022130.01.T01:CDS
AATCCTTATCAGCATCATCA+TGG 0.504759 4:-68643512 None:intergenic
TAGACTTGCTTGGAAGGTGT+TGG 0.505146 4:+68644130 MsG0480022130.01.T01:CDS
AACAAACATCTTCAACATTG+AGG 0.508560 4:+68644875 MsG0480022130.01.T01:exon
AGCTCTACAAACATTCTGTT+GGG 0.509268 4:+68643935 MsG0480022130.01.T01:CDS
CATTTATGCAAAACTGATAA+CGG 0.510531 4:+68644190 MsG0480022130.01.T01:CDS
GAGCTCTACAAACATTCTGT+TGG 0.514147 4:+68643934 MsG0480022130.01.T01:CDS
ATTGGAGTTAGTCTGGGAAA+TGG 0.520618 4:+68644460 MsG0480022130.01.T01:CDS
TGTAAGGAAGCCGAGATAGC+AGG 0.527137 4:+68644680 MsG0480022130.01.T01:CDS
TTACTGGTTTGGCGAGTCGA+GGG 0.531104 4:+68644063 MsG0480022130.01.T01:CDS
ATGAAAGTCTGTGCTAAGAT+GGG 0.535672 4:+68644317 MsG0480022130.01.T01:CDS
GAACCTTAGACTTGCTTGGA+AGG 0.536489 4:+68644124 MsG0480022130.01.T01:CDS
GATAAAGGAATTAGGACAGA+TGG 0.539449 4:+68643899 MsG0480022130.01.T01:CDS
CCCAACGGACGAATCTTATG+AGG 0.543923 4:-68643687 None:intergenic
ACGCTGCCGGAGTTGGTCGT+TGG 0.546578 4:+68643160 MsG0480022130.01.T01:exon
AAAACCGGGGAAATTGGATC+GGG 0.549557 4:+68643641 MsG0480022130.01.T01:CDS
AATAAATTAACACCAAACTC+TGG 0.551825 4:-68643453 None:intergenic
ATCTTATGAGGAGACGGAAG+AGG 0.552774 4:-68643675 None:intergenic
TTTACTGGTTTGGCGAGTCG+AGG 0.553770 4:+68644062 MsG0480022130.01.T01:CDS
ATCCTTATCAGCATCATCAT+GGG 0.554943 4:-68643511 None:intergenic
GAACAAATGGAAGCCCATAA+GGG 0.555875 4:-68644849 None:intergenic
CTGGGACCAACGACCAACTC+CGG 0.564959 4:-68643166 None:intergenic
GGTTTAGATTAGAAATGTGG+GGG 0.565516 4:-68643271 None:intergenic
ATAAAGGAATTAGGACAGAT+GGG 0.567687 4:+68643900 MsG0480022130.01.T01:CDS
AAACAGTGACAAATTCGTCC+AGG 0.571231 4:+68643189 MsG0480022130.01.T01:exon
GGGTTTAGATTAGAAATGTG+GGG 0.580706 4:-68643272 None:intergenic
TTTCGATGAAGAGAGTGATG+AGG 0.586015 4:+68643533 MsG0480022130.01.T01:CDS
GCCGAAAAGACTACCAGCTA+TGG 0.587915 4:+68643719 MsG0480022130.01.T01:CDS
TACTGGTTTGGCGAGTCGAG+GGG 0.589131 4:+68644064 MsG0480022130.01.T01:CDS
GGACATGCTTGAAATTTACA+TGG 0.590255 4:+68644625 MsG0480022130.01.T01:CDS
GGACGAATCTTATGAGGAGA+CGG 0.593415 4:-68643681 None:intergenic
AGAGGCATTGGAGTTAGTCT+GGG 0.593779 4:+68644454 MsG0480022130.01.T01:CDS
CAACATGTCTGTATCTATCA+GGG 0.602988 4:-68644226 None:intergenic
CCGCGAGTAGAAACCATAGC+TGG 0.608941 4:-68643732 None:intergenic
CCAGCTATGGTTTCTACTCG+CGG 0.609856 4:+68643732 MsG0480022130.01.T01:CDS
AGGCCAGAATCCAATCATCC+GGG 0.612823 4:-68643980 None:intergenic
GGAGTTAGTCTGGGAAATGG+AGG 0.613056 4:+68644463 MsG0480022130.01.T01:CDS
CAATCATCCGGGAAAAGATG+AGG 0.616540 4:-68643969 None:intergenic
ACTCTGGAGGTAGCTTATCA+CGG 0.618990 4:-68643437 None:intergenic
CGATGAAGAGAGTGATGAGG+AGG 0.619440 4:+68643536 MsG0480022130.01.T01:CDS
TGACCTTCCAGCTTATCGTG+TGG 0.623867 4:+68644502 MsG0480022130.01.T01:CDS
GTGCCGTTGTTAGATGAACT+CGG 0.626200 4:+68644248 MsG0480022130.01.T01:CDS
TGATATAGTATAATTTGCAA+TGG 0.627527 4:+68644816 MsG0480022130.01.T01:exon
TCCTTGTATAAACCAAAAGT+GGG 0.628976 4:-68644605 None:intergenic
GATAAGCTGGAAGGTCAAAG+AGG 0.629396 4:-68644496 None:intergenic
GAAGTGCAAAGAGATCTGTA+AGG 0.641003 4:+68644664 MsG0480022130.01.T01:CDS
GTTTAGATTAGAAATGTGGG+GGG 0.642551 4:-68643270 None:intergenic
GTCTGGTTCTCAACCTAGTG+TGG 0.645341 4:+68644382 MsG0480022130.01.T01:CDS
GGTTTGTTCAGTGGTTGTGG+TGG 0.647592 4:-68643490 None:intergenic
TTACCACACGATAAGCTGGA+AGG 0.651658 4:-68644505 None:intergenic
AATGGAACAAAATGCACACA+AGG 0.652532 4:-68643321 None:intergenic
TGTATTTCTTCTCTGCATAG+CGG 0.653518 4:-68644430 None:intergenic
GTGGTGTACATTACCACACT+AGG 0.656409 4:-68644395 None:intergenic
ATGTTTGTAGAGCTCTCTCA+GGG 0.659665 4:-68643926 None:intergenic
GGAGGTAGCTTATCACGGCG+TGG 0.660726 4:-68643432 None:intergenic
GGCCAAAACCTCAATCGTTG+AGG 0.662877 4:-68644000 None:intergenic
GCACTTCGCTATCCTCCCGG+AGG 0.676825 4:-68644648 None:intergenic
TTCGGCGTAGGTAGTCCCAA+CGG 0.678590 4:-68643702 None:intergenic
AAATTAACACCAAACTCTGG+AGG 0.690491 4:-68643450 None:intergenic
AAATTTACATGGCCTCCGGG+AGG 0.691482 4:+68644636 MsG0480022130.01.T01:CDS
TAAAGGAATTAGGACAGATG+GGG 0.700398 4:+68643901 MsG0480022130.01.T01:CDS
ATGATCTATCGAGAGCCGTG+CGG 0.720664 4:+68644549 MsG0480022130.01.T01:CDS
TGCAGAGAAGAAATACAGAG+AGG 0.725364 4:+68644436 MsG0480022130.01.T01:CDS
ATAGCGGCTGTGAATTACAG+TGG 0.744768 4:-68644414 None:intergenic
GCTCCGAGTTCATCTAACAA+CGG 0.747325 4:-68644251 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATATGATAAACAAGAAAA+AGG - Chr4:68643219-68643238 None:intergenic 15.0%
!!! CTTGTTTATCATATAATTTT+CGG + Chr4:68643223-68643242 MsG0480022130.01.T01:exon 15.0%
!!! TGATATAGTATAATTTGCAA+TGG + Chr4:68644816-68644835 MsG0480022130.01.T01:exon 20.0%
! AATAAATTAACACCAAACTC+TGG - Chr4:68643456-68643475 None:intergenic 25.0%
! ATACTGAACATACCATTATT+AGG - Chr4:68643296-68643315 None:intergenic 25.0%
! ATATAGATACTGATGTTGTT+TGG + Chr4:68643565-68643584 MsG0480022130.01.T01:CDS 25.0%
! ATTTGAATTTACTGCTAAAG+TGG - Chr4:68643376-68643395 None:intergenic 25.0%
! CATTTATGCAAAACTGATAA+CGG + Chr4:68644190-68644209 MsG0480022130.01.T01:CDS 25.0%
! TACTGAACATACCATTATTA+GGG - Chr4:68643295-68643314 None:intergenic 25.0%
! TAGAAAGGATAAAAGATTGT+TGG + Chr4:68644160-68644179 MsG0480022130.01.T01:CDS 25.0%
! TCTAATCTAAACCCTAATAA+TGG + Chr4:68643281-68643300 MsG0480022130.01.T01:exon 25.0%
!! TATAGATACTGATGTTGTTT+GGG + Chr4:68643566-68643585 MsG0480022130.01.T01:CDS 25.0%
!! TTTTCAAAACTTAAAGAAGC+TGG + Chr4:68644575-68644594 MsG0480022130.01.T01:CDS 25.0%
!!! TTGATTAAGGGTTTTTTGAA+AGG + Chr4:68644098-68644117 MsG0480022130.01.T01:CDS 25.0%
AAACAAGAAAAAGGAAAACC+TGG - Chr4:68643210-68643229 None:intergenic 30.0%
AACAAACATCTTCAACATTG+GGG + Chr4:68644875-68644894 MsG0480022130.01.T01:exon 30.0%
AGGGTTTAGATTAGAAATGT+GGG - Chr4:68643276-68643295 None:intergenic 30.0%
ATAAAGGAATTAGGACAGAT+GGG + Chr4:68643900-68643919 MsG0480022130.01.T01:CDS 30.0%
CAACAAACATCTTCAACATT+GGG + Chr4:68644874-68644893 MsG0480022130.01.T01:exon 30.0%
TAGGGTTTAGATTAGAAATG+TGG - Chr4:68643277-68643296 None:intergenic 30.0%
TCAACAAACATCTTCAACAT+TGG + Chr4:68644873-68644892 MsG0480022130.01.T01:exon 30.0%
TCCTTGTATAAACCAAAAGT+GGG - Chr4:68644608-68644627 None:intergenic 30.0%
TGATCTGAATTTGAATTCAC+AGG + Chr4:68644280-68644299 MsG0480022130.01.T01:CDS 30.0%
TTACTGCTAAAGTGGTTATT+TGG - Chr4:68643368-68643387 None:intergenic 30.0%
TTCTTTATCGTTGACGATAA+AGG + Chr4:68643884-68643903 MsG0480022130.01.T01:CDS 30.0%
TTTAACCTCGAAAAGTTTAC+TGG + Chr4:68644047-68644066 MsG0480022130.01.T01:CDS 30.0%
! ATCAGTTTTGCATAAATGCT+AGG - Chr4:68644188-68644207 None:intergenic 30.0%
! GATGTTTGTTGATGAACAAA+TGG - Chr4:68644865-68644884 None:intergenic 30.0%
!!! AAAAACCCGAGTTTTTTAGT+TGG + Chr4:68643777-68643796 MsG0480022130.01.T01:CDS 30.0%
!!! AAAACCCGAGTTTTTTAGTT+GGG + Chr4:68643778-68643797 MsG0480022130.01.T01:CDS 30.0%
!!! AAGTTTTGAAAAATACCGCA+CGG - Chr4:68644567-68644586 None:intergenic 30.0%
!!! ATTAAGGGTTTTTTGAAAGG+AGG + Chr4:68644101-68644120 MsG0480022130.01.T01:CDS 30.0%
!!! TTAAGGGTTTTTTGAAAGGA+GGG + Chr4:68644102-68644121 MsG0480022130.01.T01:CDS 30.0%
AAATTAACACCAAACTCTGG+AGG - Chr4:68643453-68643472 None:intergenic 35.0%
AATCCTTATCAGCATCATCA+TGG - Chr4:68643515-68643534 None:intergenic 35.0%
AATGAAAGTCTGTGCTAAGA+TGG + Chr4:68644316-68644335 MsG0480022130.01.T01:CDS 35.0%
AATGGAACAAAATGCACACA+AGG - Chr4:68643324-68643343 None:intergenic 35.0%
ACAACATGTCTGTATCTATC+AGG - Chr4:68644230-68644249 None:intergenic 35.0%
AGCTCTACAAACATTCTGTT+GGG + Chr4:68643935-68643954 MsG0480022130.01.T01:CDS 35.0%
AGCTTATCGTGTGGTAATAA+AGG + Chr4:68644511-68644530 MsG0480022130.01.T01:CDS 35.0%
AGGTAGAATTCCACAAAAAC+CGG + Chr4:68643626-68643645 MsG0480022130.01.T01:CDS 35.0%
ATCCTTATCAGCATCATCAT+GGG - Chr4:68643514-68643533 None:intergenic 35.0%
ATGAAAGTCTGTGCTAAGAT+GGG + Chr4:68644317-68644336 MsG0480022130.01.T01:CDS 35.0%
CAACATGTCTGTATCTATCA+GGG - Chr4:68644229-68644248 None:intergenic 35.0%
GATAAAGGAATTAGGACAGA+TGG + Chr4:68643899-68643918 MsG0480022130.01.T01:CDS 35.0%
GGACATGCTTGAAATTTACA+TGG + Chr4:68644625-68644644 MsG0480022130.01.T01:CDS 35.0%
GGATATCGAAGATTCTTTGT+TGG - Chr4:68643414-68643433 None:intergenic 35.0%
GGGTTTAGATTAGAAATGTG+GGG - Chr4:68643275-68643294 None:intergenic 35.0%
GGTTTAGATTAGAAATGTGG+GGG - Chr4:68643274-68643293 None:intergenic 35.0%
GTCCTTGTATAAACCAAAAG+TGG - Chr4:68644609-68644628 None:intergenic 35.0%
GTCGATGATTCTTGGAAAAT+GGG + Chr4:68643842-68643861 MsG0480022130.01.T01:CDS 35.0%
GTTTAGATTAGAAATGTGGG+GGG - Chr4:68643273-68643292 None:intergenic 35.0%
TAAAGGAATTAGGACAGATG+GGG + Chr4:68643901-68643920 MsG0480022130.01.T01:CDS 35.0%
TCGTTGACGATAAAGGAATT+AGG + Chr4:68643891-68643910 MsG0480022130.01.T01:CDS 35.0%
TGTATTTCTTCTCTGCATAG+CGG - Chr4:68644433-68644452 None:intergenic 35.0%
TGTCGATGATTCTTGGAAAA+TGG + Chr4:68643841-68643860 MsG0480022130.01.T01:CDS 35.0%
TTTATTACCACACGATAAGC+TGG - Chr4:68644512-68644531 None:intergenic 35.0%
! AAATCAACCTCATCTTTTCC+CGG + Chr4:68643962-68643981 MsG0480022130.01.T01:CDS 35.0%
! ACGAATTTGTCACTGTTTCT+GGG - Chr4:68643187-68643206 None:intergenic 35.0%
! GAAAATGGGTACATTTTCTG+AGG + Chr4:68643856-68643875 MsG0480022130.01.T01:CDS 35.0%
! TGTGTGCATTTTGTTCCATT+GGG + Chr4:68643324-68643343 MsG0480022130.01.T01:CDS 35.0%
! TTGTGTGCATTTTGTTCCAT+TGG + Chr4:68643323-68643342 MsG0480022130.01.T01:CDS 35.0%
! TTGTTGAGAGCTTGTTTAGT+TGG + Chr4:68644351-68644370 MsG0480022130.01.T01:CDS 35.0%
! TTTAGTTGGTTCAAACAGTC+TGG + Chr4:68644365-68644384 MsG0480022130.01.T01:CDS 35.0%
!!! TCCCACTTTTGGTTTATACA+AGG + Chr4:68644604-68644623 MsG0480022130.01.T01:CDS 35.0%
AAAAACCGGGGAAATTGGAT+CGG + Chr4:68643640-68643659 MsG0480022130.01.T01:CDS 40.0%
AAACAGTGACAAATTCGTCC+AGG + Chr4:68643189-68643208 MsG0480022130.01.T01:exon 40.0%
AATGTTTGTAGAGCTCTCTC+AGG - Chr4:68643930-68643949 None:intergenic 40.0%
ATCATCGACACATCTTCATC+TGG - Chr4:68643831-68643850 None:intergenic 40.0%
ATGGCTACACTAAACCCTTA+TGG + Chr4:68644835-68644854 MsG0480022130.01.T01:exon 40.0%
ATGTTTGTAGAGCTCTCTCA+GGG - Chr4:68643929-68643948 None:intergenic 40.0%
CCAACCCAACTAAAAAACTC+GGG - Chr4:68643785-68643804 None:intergenic 40.0%
CTGCATAAAGTTCTTCCCAA+TGG - Chr4:68643342-68643361 None:intergenic 40.0%
CTTGAAATTTACATGGCCTC+CGG + Chr4:68644632-68644651 MsG0480022130.01.T01:CDS 40.0%
GAACAAATGGAAGCCCATAA+GGG - Chr4:68644852-68644871 None:intergenic 40.0%
GAAGTGCAAAGAGATCTGTA+AGG + Chr4:68644664-68644683 MsG0480022130.01.T01:CDS 40.0%
GACGAATTTGTCACTGTTTC+TGG - Chr4:68643188-68643207 None:intergenic 40.0%
GAGCTCTACAAACATTCTGT+TGG + Chr4:68643934-68643953 MsG0480022130.01.T01:CDS 40.0%
GCCAACCCAACTAAAAAACT+CGG - Chr4:68643786-68643805 None:intergenic 40.0%
GGTAGAATTCCACAAAAACC+GGG + Chr4:68643627-68643646 MsG0480022130.01.T01:CDS 40.0%
GTAGAATTCCACAAAAACCG+GGG + Chr4:68643628-68643647 MsG0480022130.01.T01:CDS 40.0%
TAACGTGAAACCTGCTATCT+CGG - Chr4:68644693-68644712 None:intergenic 40.0%
TGAACAAATGGAAGCCCATA+AGG - Chr4:68644853-68644872 None:intergenic 40.0%
TGCAGAGAAGAAATACAGAG+AGG + Chr4:68644436-68644455 MsG0480022130.01.T01:CDS 40.0%
TGGCTACACTAAACCCTTAT+GGG + Chr4:68644836-68644855 MsG0480022130.01.T01:exon 40.0%
TTGAAATTTACATGGCCTCC+GGG + Chr4:68644633-68644652 MsG0480022130.01.T01:CDS 40.0%
TTTCGATGAAGAGAGTGATG+AGG + Chr4:68643533-68643552 MsG0480022130.01.T01:CDS 40.0%
! AACCCATGATGATGCTGATA+AGG + Chr4:68643509-68643528 MsG0480022130.01.T01:CDS 40.0%
! ACCATAGCTGGTAGTCTTTT+CGG - Chr4:68643723-68643742 None:intergenic 40.0%
! ATCATCATGGGTTTGTTCAG+TGG - Chr4:68643502-68643521 None:intergenic 40.0%
! ATTGGAGTTAGTCTGGGAAA+TGG + Chr4:68644460-68644479 MsG0480022130.01.T01:CDS 40.0%
! CCAAACCAGTAAACTTTTCG+AGG - Chr4:68644055-68644074 None:intergenic 40.0%
! CCTCGAAAAGTTTACTGGTT+TGG + Chr4:68644052-68644071 MsG0480022130.01.T01:CDS 40.0%
! GAAGAAATACAGAGAGGCAT+TGG + Chr4:68644442-68644461 MsG0480022130.01.T01:CDS 40.0%
! GAAGATGTGTCGATGATTCT+TGG + Chr4:68643834-68643853 MsG0480022130.01.T01:CDS 40.0%
!! ATGGGTACATTTTCTGAGGA+AGG + Chr4:68643860-68643879 MsG0480022130.01.T01:CDS 40.0%
!! GCAAAACTGATAACGGAACT+TGG + Chr4:68644197-68644216 MsG0480022130.01.T01:CDS 40.0%
!! TGGGTACATTTTCTGAGGAA+GGG + Chr4:68643861-68643880 MsG0480022130.01.T01:CDS 40.0%
!!! GCTATAGCATCGCTTTTTCA+AGG + Chr4:68643606-68643625 MsG0480022130.01.T01:CDS 40.0%
AAAACCGGGGAAATTGGATC+GGG + Chr4:68643641-68643660 MsG0480022130.01.T01:CDS 45.0%
AACCTTCAACTCATGCTTCC+CGG - Chr4:68644024-68644043 None:intergenic 45.0%
ACACCTTCCAAGCAAGTCTA+AGG - Chr4:68644130-68644149 None:intergenic 45.0%
ATAGCGGCTGTGAATTACAG+TGG - Chr4:68644417-68644436 None:intergenic 45.0%
ATCTTATGAGGAGACGGAAG+AGG - Chr4:68643678-68643697 None:intergenic 45.0%
CAATCATCCGGGAAAAGATG+AGG - Chr4:68643972-68643991 None:intergenic 45.0%
CCTCATAAGATTCGTCCGTT+GGG + Chr4:68643687-68643706 MsG0480022130.01.T01:CDS 45.0%
GATAAGCTACCTCCAGAGTT+TGG + Chr4:68643441-68643460 MsG0480022130.01.T01:CDS 45.0%
GATAAGCTGGAAGGTCAAAG+AGG - Chr4:68644499-68644518 None:intergenic 45.0%
GCTCCGAGTTCATCTAACAA+CGG - Chr4:68644254-68644273 None:intergenic 45.0%
GGACGAATCTTATGAGGAGA+CGG - Chr4:68643684-68643703 None:intergenic 45.0%
GTGGTGTACATTACCACACT+AGG - Chr4:68644398-68644417 None:intergenic 45.0%
TCCACAAAAACCGGGGAAAT+TGG + Chr4:68643635-68643654 MsG0480022130.01.T01:CDS 45.0%
TCCTCATAAGATTCGTCCGT+TGG + Chr4:68643686-68643705 MsG0480022130.01.T01:CDS 45.0%
TTACCACACGATAAGCTGGA+AGG - Chr4:68644508-68644527 None:intergenic 45.0%
TTTCCCGGATGATTGGATTC+TGG + Chr4:68643977-68643996 MsG0480022130.01.T01:CDS 45.0%
! ACTCTGGAGGTAGCTTATCA+CGG - Chr4:68643440-68643459 None:intergenic 45.0%
! ATGGGTTTGTTCAGTGGTTG+TGG - Chr4:68643496-68643515 None:intergenic 45.0%
! CTCATCTTTTCCCGGATGAT+TGG + Chr4:68643970-68643989 MsG0480022130.01.T01:CDS 45.0%
! GAACCTTAGACTTGCTTGGA+AGG + Chr4:68644124-68644143 MsG0480022130.01.T01:CDS 45.0%
! GCTGGATTTTCTCCCACTTT+TGG + Chr4:68644593-68644612 MsG0480022130.01.T01:CDS 45.0%
! GTGCCGTTGTTAGATGAACT+CGG + Chr4:68644248-68644267 MsG0480022130.01.T01:CDS 45.0%
! TAGACTTGCTTGGAAGGTGT+TGG + Chr4:68644130-68644149 MsG0480022130.01.T01:CDS 45.0%
! TCCAATTTCCCCGGTTTTTG+TGG - Chr4:68643639-68643658 None:intergenic 45.0%
!! AGAGGCATTGGAGTTAGTCT+GGG + Chr4:68644454-68644473 MsG0480022130.01.T01:CDS 45.0%
!! GGTGTTGGCAATTGCTAGAA+AGG + Chr4:68644145-68644164 MsG0480022130.01.T01:CDS 45.0%
!! GTGTTGGAGGCGTTGATTAA+GGG + Chr4:68644086-68644105 MsG0480022130.01.T01:CDS 45.0%
!! TCAACGATTGAGGTTTTGGC+CGG + Chr4:68644002-68644021 MsG0480022130.01.T01:CDS 45.0%
!!! CCCGAGTTTTTTAGTTGGGT+TGG + Chr4:68643782-68643801 MsG0480022130.01.T01:CDS 45.0%
AAATTTACATGGCCTCCGGG+AGG + Chr4:68644636-68644655 MsG0480022130.01.T01:CDS 50.0%
AGGCCAGAATCCAATCATCC+GGG - Chr4:68643983-68644002 None:intergenic 50.0%
ATGATCTATCGAGAGCCGTG+CGG + Chr4:68644549-68644568 MsG0480022130.01.T01:CDS 50.0%
CCAGCTATGGTTTCTACTCG+CGG + Chr4:68643732-68643751 MsG0480022130.01.T01:CDS 50.0%
CCCAACGGACGAATCTTATG+AGG - Chr4:68643690-68643709 None:intergenic 50.0%
CGATGAAGAGAGTGATGAGG+AGG + Chr4:68643536-68643555 MsG0480022130.01.T01:CDS 50.0%
CTTTCCCGATCCAATTTCCC+CGG - Chr4:68643648-68643667 None:intergenic 50.0%
GAGGCCAGAATCCAATCATC+CGG - Chr4:68643984-68644003 None:intergenic 50.0%
GATTCTGGCCTCAACGATTG+AGG + Chr4:68643992-68644011 MsG0480022130.01.T01:CDS 50.0%
GCCGAAAAGACTACCAGCTA+TGG + Chr4:68643719-68643738 MsG0480022130.01.T01:CDS 50.0%
GGCCAAAACCTCAATCGTTG+AGG - Chr4:68644003-68644022 None:intergenic 50.0%
GGTTGGCGAGAGAGATTAGT+AGG + Chr4:68643799-68643818 MsG0480022130.01.T01:CDS 50.0%
GGTTTCTACTCGCGGTTCTA+TGG + Chr4:68643740-68643759 MsG0480022130.01.T01:CDS 50.0%
TGACCTTCCAGCTTATCGTG+TGG + Chr4:68644502-68644521 MsG0480022130.01.T01:CDS 50.0%
TGTAAGGAAGCCGAGATAGC+AGG + Chr4:68644680-68644699 MsG0480022130.01.T01:CDS 50.0%
TGTTCAGTGGTTGTGGTGGT+AGG - Chr4:68643489-68643508 None:intergenic 50.0%
TTTGCACTTCGCTATCCTCC+CGG - Chr4:68644654-68644673 None:intergenic 50.0%
! GAGGGAACCTTAGACTTGCT+TGG + Chr4:68644120-68644139 MsG0480022130.01.T01:CDS 50.0%
! GGAGTTAGTCTGGGAAATGG+AGG + Chr4:68644463-68644482 MsG0480022130.01.T01:CDS 50.0%
! GGCCTCAACGATTGAGGTTT+TGG + Chr4:68643998-68644017 MsG0480022130.01.T01:CDS 50.0%
! GGTTTGTTCAGTGGTTGTGG+TGG - Chr4:68643493-68643512 None:intergenic 50.0%
!! CAACGATTGAGGTTTTGGCC+GGG + Chr4:68644003-68644022 MsG0480022130.01.T01:CDS 50.0%
!! GAGAGGCATTGGAGTTAGTC+TGG + Chr4:68644453-68644472 MsG0480022130.01.T01:CDS 50.0%
!! GGTGTTGGAGGCGTTGATTA+AGG + Chr4:68644085-68644104 MsG0480022130.01.T01:CDS 50.0%
!! GTCTGGTTCTCAACCTAGTG+TGG + Chr4:68644382-68644401 MsG0480022130.01.T01:CDS 50.0%
!! TTACTGGTTTGGCGAGTCGA+GGG + Chr4:68644063-68644082 MsG0480022130.01.T01:CDS 50.0%
!! TTTACTGGTTTGGCGAGTCG+AGG + Chr4:68644062-68644081 MsG0480022130.01.T01:CDS 50.0%
CCGCGAGTAGAAACCATAGC+TGG - Chr4:68643735-68643754 None:intergenic 55.0%
TGAGGAGACGGAAGAGGAAG+AGG - Chr4:68643672-68643691 None:intergenic 55.0%
TTCGGCGTAGGTAGTCCCAA+CGG - Chr4:68643705-68643724 None:intergenic 55.0%
! GCTGGTAGTCTTTTCGGCGT+AGG - Chr4:68643717-68643736 None:intergenic 55.0%
!! TACTGGTTTGGCGAGTCGAG+GGG + Chr4:68644064-68644083 MsG0480022130.01.T01:CDS 55.0%
CTGGGACCAACGACCAACTC+CGG - Chr4:68643169-68643188 None:intergenic 60.0%
GGAGGTAGCTTATCACGGCG+TGG - Chr4:68643435-68643454 None:intergenic 60.0%
! GGCCGGGAAGCATGAGTTGA+AGG + Chr4:68644019-68644038 MsG0480022130.01.T01:CDS 60.0%
! TTTGGCGAGTCGAGGGGTGT+TGG + Chr4:68644070-68644089 MsG0480022130.01.T01:CDS 60.0%
GCACTTCGCTATCCTCCCGG+AGG - Chr4:68644651-68644670 None:intergenic 65.0%
! ACGCTGCCGGAGTTGGTCGT+TGG + Chr4:68643160-68643179 MsG0480022130.01.T01:exon 65.0%
!! GGCGAGTCGAGGGGTGTTGG+AGG + Chr4:68644073-68644092 MsG0480022130.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 68643155 68644894 68643155 ID=MsG0480022130.01;
Chr4 mRNA 68643155 68644894 68643155 ID=MsG0480022130.01.T01;Parent=MsG0480022130.01
Chr4 exon 68643155 68644894 68643155 ID=MsG0480022130.01.T01.exon;Parent=MsG0480022130.01.T01
Chr4 CDS 68643300 68644733 68643300 ID=MsG0480022130.01.T01.cds;Parent=MsG0480022130.01.T01
Gene Sequence

>MsG0480022130.01.T01

ATGGTATGTTCAGTATCATTTCCTTGTGTGCATTTTGTTCCATTGGGAAGAACTTTATGCAGAAACCAAATAACCACTTTAGCAGTAAATTCAAATAGAAGAAGAAAAAATCCAACAAAGAATCTTCGATATCCACGCCGTGATAAGCTACCTCCAGAGTTTGGTGTTAATTTATTCTTGAAGAAACCTACCACCACAACCACTGAACAAACCCATGATGATGCTGATAAGGATTTCGATGAAGAGAGTGATGAGGAGGAACAAAATATAGATACTGATGTTGTTTGGGAATCTGATGAAATCGACGCTATAGCATCGCTTTTTCAAGGTAGAATTCCACAAAAACCGGGGAAATTGGATCGGGAAAGACCTCTTCCTCTTCCGTCTCCTCATAAGATTCGTCCGTTGGGACTACCTACGCCGAAAAGACTACCAGCTATGGTTTCTACTCGCGGTTCTATGGATAAGAAATTATATAAAAACCCGAGTTTTTTAGTTGGGTTGGCGAGAGAGATTAGTAGGCTTAATCCAGATGAAGATGTGTCGATGATTCTTGGAAAATGGGTACATTTTCTGAGGAAGGGTTCTTTATCGTTGACGATAAAGGAATTAGGACAGATGGGGTACCCTGAGAGAGCTCTACAAACATTCTGTTGGGCACAAAATCAACCTCATCTTTTCCCGGATGATTGGATTCTGGCCTCAACGATTGAGGTTTTGGCCGGGAAGCATGAGTTGAAGGTTCTATTTAACCTCGAAAAGTTTACTGGTTTGGCGAGTCGAGGGGTGTTGGAGGCGTTGATTAAGGGTTTTTTGAAAGGAGGGAACCTTAGACTTGCTTGGAAGGTGTTGGCAATTGCTAGAAAGGATAAAAGATTGTTGGATCCTAGCATTTATGCAAAACTGATAACGGAACTTGGAAAGAACCCTGATAGATACAGACATGTTGTGCCGTTGTTAGATGAACTCGGAGCACGAGATGATCTGAATTTGAATTCACAGGATTGTACTGCTATAATGAAAGTCTGTGCTAAGATGGGAAAGTTTGAAGTTGTTGAGAGCTTGTTTAGTTGGTTCAAACAGTCTGGTTCTCAACCTAGTGTGGTAATGTACACCACTGTAATTCACAGCCGCTATGCAGAGAAGAAATACAGAGAGGCATTGGAGTTAGTCTGGGAAATGGAGGCTTCAAATTGCCTCTTTGACCTTCCAGCTTATCGTGTGGTAATAAAGGTGTTTGTTGCTTTGAATGATCTATCGAGAGCCGTGCGGTATTTTTCAAAACTTAAAGAAGCTGGATTTTCTCCCACTTTTGGTTTATACAAGGACATGCTTGAAATTTACATGGCCTCCGGGAGGATAGCGAAGTGCAAAGAGATCTGTAAGGAAGCCGAGATAGCAGGTTTCACGTTACATAAACATCTAGTGTCATGA

Protein sequence

>MsG0480022130.01.T01

MVCSVSFPCVHFVPLGRTLCRNQITTLAVNSNRRRKNPTKNLRYPRRDKLPPEFGVNLFLKKPTTTTTEQTHDDADKDFDEESDEEEQNIDTDVVWESDEIDAIASLFQGRIPQKPGKLDRERPLPLPSPHKIRPLGLPTPKRLPAMVSTRGSMDKKLYKNPSFLVGLAREISRLNPDEDVSMILGKWVHFLRKGSLSLTIKELGQMGYPERALQTFCWAQNQPHLFPDDWILASTIEVLAGKHELKVLFNLEKFTGLASRGVLEALIKGFLKGGNLRLAWKVLAIARKDKRLLDPSIYAKLITELGKNPDRYRHVVPLLDELGARDDLNLNSQDCTAIMKVCAKMGKFEVVESLFSWFKQSGSQPSVVMYTTVIHSRYAEKKYREALELVWEMEASNCLFDLPAYRVVIKVFVALNDLSRAVRYFSKLKEAGFSPTFGLYKDMLEIYMASGRIAKCKEICKEAEIAGFTLHKHLVS*