Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0103200 | XP_003588480.1 | 97.368 | 342 | 8 | 1 | 1 | 341 | 1 | 342 | 0.0 | 689 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0103200 | sp|Q9FNE9|ATXR6_ARATH | 72.642 | 318 | 84 | 3 | 26 | 341 | 33 | 349 | 1.88e-167 | 473 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0103200 | G7I3E6 | 97.368 | 342 | 8 | 1 | 1 | 341 | 1 | 342 | 0.0 | 689 |
Gene ID | Type | Classification |
---|---|---|
Msa0103200 | TR | PHD |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0005020 | Msa0103200 | 0.802829 | 4.659215e-49 | -8.615850e-47 |
Msa0032980 | Msa0103200 | 0.844758 | 6.200010e-59 | -8.615850e-47 |
Msa0053070 | Msa0103200 | 0.801427 | 9.051443e-49 | -8.615850e-47 |
Msa0057640 | Msa0103200 | 0.842262 | 2.879756e-58 | -8.615850e-47 |
Msa0091350 | Msa0103200 | 0.846527 | 2.053967e-59 | -8.615850e-47 |
Msa0093860 | Msa0103200 | 0.804903 | 1.727839e-49 | -8.615850e-47 |
Msa0098410 | Msa0103200 | 0.809116 | 2.218094e-50 | -8.615850e-47 |
Msa0103200 | Msa0115550 | 0.809080 | 2.258153e-50 | -8.615850e-47 |
Msa0103200 | Msa0125590 | 0.806202 | 9.226067e-50 | -8.615850e-47 |
Msa0103200 | Msa0127340 | 0.822748 | 2.006946e-53 | -8.615850e-47 |
Msa0103200 | Msa0140380 | 0.825030 | 5.854123e-54 | -8.615850e-47 |
Msa0103200 | Msa0153210 | 0.800228 | 1.590209e-48 | -8.615850e-47 |
Msa0103200 | Msa0160160 | 0.845616 | 3.634150e-59 | -8.615850e-47 |
Msa0103200 | Msa0160170 | 0.840681 | 7.511847e-58 | -8.615850e-47 |
Msa0103200 | Msa0160290 | 0.849694 | 2.743146e-60 | -8.615850e-47 |
Msa0103200 | Msa0165830 | 0.849885 | 2.425596e-60 | -8.615850e-47 |
Msa0103200 | Msa0166170 | 0.805510 | 1.289078e-49 | -8.615850e-47 |
Msa0103200 | Msa0367520 | 0.801618 | 8.269822e-49 | -8.615850e-47 |
Msa0103200 | Msa0368860 | 0.823575 | 1.286502e-53 | -8.615850e-47 |
Msa0103200 | Msa0373170 | 0.811411 | 7.094945e-51 | -8.615850e-47 |
Msa0103200 | Msa0383000 | 0.808070 | 3.710525e-50 | -8.615850e-47 |
Msa0103200 | Msa0415140 | 0.803865 | 2.843299e-49 | -8.615850e-47 |
Msa0103200 | Msa0420670 | 0.821007 | 5.076586e-53 | -8.615850e-47 |
Msa0103200 | Msa0421750 | 0.808912 | 2.453380e-50 | -8.615850e-47 |
Msa0103200 | Msa0433150 | 0.810745 | 9.892136e-51 | -8.615850e-47 |
Msa0103200 | Msa0433760 | 0.822389 | 2.431397e-53 | -8.615850e-47 |
Msa0103200 | Msa0462780 | 0.809889 | 1.513758e-50 | -8.615850e-47 |
Msa0103200 | Msa0466520 | 0.807326 | 5.338883e-50 | -8.615850e-47 |
Msa0103200 | Msa0466880 | 0.801422 | 9.072464e-49 | -8.615850e-47 |
Msa0103200 | Msa0467690 | 0.813890 | 2.035989e-51 | -8.615850e-47 |
Msa0103200 | Msa0476280 | 0.802343 | 5.869534e-49 | -8.615850e-47 |
Msa0103200 | Msa0477630 | 0.819442 | 1.158670e-52 | -8.615850e-47 |
Msa0103200 | Msa0480730 | 0.802101 | 6.581073e-49 | -8.615850e-47 |
Msa0103200 | Msa0512530 | 0.820107 | 8.169866e-53 | -8.615850e-47 |
Msa0103200 | Msa0513080 | 0.818139 | 2.290392e-52 | -8.615850e-47 |
Msa0103200 | Msa0513560 | 0.815611 | 8.460820e-52 | -8.615850e-47 |
Msa0103200 | Msa0514020 | 0.802421 | 5.656859e-49 | -8.615850e-47 |
Msa0103200 | Msa0520870 | 0.812697 | 3.721049e-51 | -8.615850e-47 |
Msa0103200 | Msa0521680 | 0.826234 | 3.034183e-54 | -8.615850e-47 |
Msa0103200 | Msa0523380 | 0.810441 | 1.150650e-50 | -8.615850e-47 |
Msa0103200 | Msa0524520 | 0.811845 | 5.709739e-51 | -8.615850e-47 |
Msa0103200 | Msa0550590 | 0.831816 | 1.346644e-55 | -8.615850e-47 |
Msa0103200 | Msa0553750 | 0.825946 | 3.552166e-54 | -8.615850e-47 |
Msa0103200 | Msa0554300 | 0.804158 | 2.470640e-49 | -8.615850e-47 |
Msa0103200 | Msa0561560 | 0.831063 | 2.064516e-55 | -8.615850e-47 |
Msa0103200 | Msa0563740 | 0.806326 | 8.686893e-50 | -8.615850e-47 |
Msa0103200 | Msa0563900 | 0.835015 | 2.145522e-56 | -8.615850e-47 |
Msa0103200 | Msa0571620 | 0.805654 | 1.202861e-49 | -8.615850e-47 |
Msa0103200 | Msa0577280 | 0.801743 | 7.797827e-49 | -8.615850e-47 |
Msa0103200 | Msa0577330 | 0.807239 | 5.569050e-50 | -8.615850e-47 |
Msa0103200 | Msa0577450 | 0.802727 | 4.891085e-49 | -8.615850e-47 |
Msa0103200 | Msa0577820 | 0.803609 | 3.212208e-49 | -8.615850e-47 |
Msa0103200 | Msa0590200 | 0.802278 | 6.051319e-49 | -8.615850e-47 |
Msa0103200 | Msa0606100 | 0.823896 | 1.081940e-53 | -8.615850e-47 |
Msa0103200 | Msa0607800 | 0.828178 | 1.038920e-54 | -8.615850e-47 |
Msa0103200 | Msa0613580 | 0.806104 | 9.671183e-50 | -8.615850e-47 |
Msa0103200 | Msa0613630 | 0.807905 | 4.022433e-50 | -8.615850e-47 |
Msa0103200 | Msa0620500 | 0.824975 | 6.031700e-54 | -8.615850e-47 |
Msa0103200 | Msa0621710 | 0.813225 | 2.850770e-51 | -8.615850e-47 |
Msa0103200 | Msa0622920 | 0.803743 | 3.013236e-49 | -8.615850e-47 |
Msa0103200 | Msa0630660 | 0.803671 | 3.118756e-49 | -8.615850e-47 |
Msa0103200 | Msa0647050 | 0.850641 | 1.489482e-60 | -8.615850e-47 |
Msa0103200 | Msa0647440 | 0.813149 | 2.961956e-51 | -8.615850e-47 |
Msa0103200 | Msa0648040 | 0.828614 | 8.152875e-55 | -8.615850e-47 |
Msa0103200 | Msa0648760 | 0.810724 | 9.999770e-51 | -8.615850e-47 |
Msa0103200 | Msa0654740 | 0.812226 | 4.716012e-51 | -8.615850e-47 |
Msa0103200 | Msa0668900 | 0.821436 | 4.042382e-53 | -8.615850e-47 |
Msa0103200 | Msa0687090 | 0.813268 | 2.789350e-51 | -8.615850e-47 |
Msa0103200 | Msa0690320 | 0.808045 | 3.755562e-50 | -8.615850e-47 |
Msa0103200 | Msa0690740 | 0.831705 | 1.434320e-55 | -8.615850e-47 |
Msa0103200 | Msa0691270 | 0.810892 | 9.194030e-51 | -8.615850e-47 |
Msa0103200 | Msa0714520 | 0.854324 | 1.327985e-61 | -8.615850e-47 |
Msa0103200 | Msa0717900 | 0.825676 | 4.115609e-54 | -8.615850e-47 |
Msa0103200 | Msa0743440 | 0.808800 | 2.592212e-50 | -8.615850e-47 |
Msa0103200 | Msa0745720 | 0.818066 | 2.379385e-52 | -8.615850e-47 |
Msa0103200 | Msa0747740 | 0.814887 | 1.225415e-51 | -8.615850e-47 |
Msa0103200 | Msa0756180 | 0.811051 | 8.493742e-51 | -8.615850e-47 |
Msa0103200 | Msa0780910 | 0.800559 | 1.361798e-48 | -8.615850e-47 |
Msa0103200 | Msa0805680 | 0.822996 | 1.756905e-53 | -8.615850e-47 |
Msa0103200 | Msa0811020 | 0.809828 | 1.559856e-50 | -8.615850e-47 |
Msa0103200 | Msa0816080 | 0.831618 | 1.507293e-55 | -8.615850e-47 |
Msa0103200 | Msa0818880 | 0.804731 | 1.876945e-49 | -8.615850e-47 |
Msa0103200 | Msa0867110 | 0.817564 | 3.088132e-52 | -8.615850e-47 |
Msa0103200 | Msa0879920 | 0.809308 | 2.018095e-50 | -8.615850e-47 |
Msa0103200 | Msa0909760 | 0.839391 | 1.629793e-57 | -8.615850e-47 |
Msa0103200 | Msa0924430 | 0.807724 | 4.395860e-50 | -8.615850e-47 |
Msa0103200 | Msa0931590 | 0.818367 | 2.033891e-52 | -8.615850e-47 |
Msa0103200 | Msa1008670 | 0.801847 | 7.422894e-49 | -8.615850e-47 |
Msa0103200 | Msa1008680 | 0.810811 | 9.575307e-51 | -8.615850e-47 |
Msa0103200 | Msa1033920 | 0.812206 | 4.763209e-51 | -8.615850e-47 |
Msa0103200 | Msa1042880 | 0.811251 | 7.686109e-51 | -8.615850e-47 |
Msa0103200 | Msa1060900 | 0.800647 | 1.306853e-48 | -8.615850e-47 |
Msa0103200 | Msa1076020 | 0.804995 | 1.652917e-49 | -8.615850e-47 |
Msa0103200 | Msa1082380 | 0.807928 | 3.977658e-50 | -8.615850e-47 |
Msa0103200 | Msa1092420 | 0.817370 | 3.415061e-52 | -8.615850e-47 |
Msa0103200 | Msa1104220 | 0.820626 | 6.209363e-53 | -8.615850e-47 |
Msa0103200 | Msa1127280 | 0.813184 | 2.910884e-51 | -8.615850e-47 |
Msa0103200 | Msa1127470 | 0.810622 | 1.051593e-50 | -8.615850e-47 |
Msa0103200 | Msa1139050 | 0.821303 | 4.337847e-53 | -8.615850e-47 |
Msa0103200 | Msa1149450 | 0.807372 | 5.221170e-50 | -8.615850e-47 |
Msa0103200 | Msa1162880 | 0.827854 | 1.242654e-54 | -8.615850e-47 |
Msa0103200 | Msa1165480 | 0.824948 | 6.119406e-54 | -8.615850e-47 |
Msa0103200 | Msa1169190 | 0.802719 | 4.908671e-49 | -8.615850e-47 |
Msa0103200 | Msa1213830 | 0.803722 | 3.044264e-49 | -8.615850e-47 |
Msa0103200 | Msa1214350 | 0.824746 | 6.829354e-54 | -8.615850e-47 |
Msa0103200 | Msa1215980 | 0.825583 | 4.331398e-54 | -8.615850e-47 |
Msa0103200 | Msa1223390 | 0.844072 | 9.478306e-59 | -8.615850e-47 |
Msa0103200 | Msa1254420 | 0.824950 | 6.114843e-54 | -8.615850e-47 |
Msa0103200 | Msa1254540 | 0.844382 | 7.827790e-59 | -8.615850e-47 |
Msa0103200 | Msa1260710 | 0.811691 | 6.169422e-51 | -8.615850e-47 |
Msa0103200 | Msa1261050 | 0.840092 | 1.070773e-57 | -8.615850e-47 |
Msa0103200 | Msa1263740 | 0.817141 | 3.845728e-52 | -8.615850e-47 |
Msa0103200 | Msa1263780 | 0.818440 | 1.958001e-52 | -8.615850e-47 |
Msa0103200 | Msa1294460 | 0.818811 | 1.613497e-52 | -8.615850e-47 |
Msa0103200 | Msa1294790 | 0.822778 | 1.974346e-53 | -8.615850e-47 |
Msa0103200 | Msa1300460 | 0.833898 | 4.092563e-56 | -8.615850e-47 |
Msa0103200 | Msa1305920 | 0.803445 | 3.474752e-49 | -8.615850e-47 |
Msa0103200 | Msa1306790 | 0.816338 | 5.821794e-52 | -8.615850e-47 |
Msa0103200 | Msa1321530 | 0.801658 | 8.115275e-49 | -8.615850e-47 |
Msa0103200 | Msa1332950 | 0.822051 | 2.912241e-53 | -8.615850e-47 |
Msa0103200 | Msa1339170 | 0.818917 | 1.526231e-52 | -8.615850e-47 |
Msa0103200 | Msa1359980 | 0.812352 | 4.427866e-51 | -8.615850e-47 |
Msa0103200 | Msa1361930 | 0.803665 | 3.128203e-49 | -8.615850e-47 |
Msa0103200 | Msa1362130 | 0.812525 | 4.057623e-51 | -8.615850e-47 |
Msa0103200 | Msa1364410 | 0.801532 | 8.613805e-49 | -8.615850e-47 |
Msa0103200 | Msa1381470 | 0.821427 | 4.061522e-53 | -8.615850e-47 |
Msa0103200 | Msa1406720 | 0.808701 | 2.721465e-50 | -8.615850e-47 |
Msa0103200 | Msa1424590 | 0.805831 | 1.104213e-49 | -8.615850e-47 |
Msa0103200 | Msa1434640 | 0.827937 | 1.187167e-54 | -8.615850e-47 |
Msa0103200 | Msa1445120 | 0.802822 | 4.675354e-49 | -8.615850e-47 |
Msa0103200 | Msa1450190 | 0.813886 | 2.039632e-51 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0103200 | MtrunA17_Chr1g0146731 | 97.368 | 342 | 8 | 1 | 1 | 341 | 1 | 342 | 0.0 | 689 |
Msa0103200 | MtrunA17_Chr1g0146761 | 68.023 | 344 | 73 | 7 | 1 | 341 | 51 | 360 | 2.56e-157 | 445 |
Msa0103200 | MtrunA17_Chr3g0129881 | 60.870 | 322 | 123 | 2 | 22 | 341 | 70 | 390 | 1.95e-135 | 390 |
Msa0103200 | MtrunA17_Chr1g0146751 | 82.031 | 128 | 23 | 0 | 184 | 311 | 69 | 196 | 4.81e-72 | 222 |
Msa0103200 | MtrunA17_Chr1g0146741 | 68.902 | 164 | 26 | 2 | 116 | 264 | 27 | 180 | 9.19e-68 | 211 |
Msa0103200 | MtrunA17_Chr8g0357751 | 73.786 | 103 | 26 | 1 | 184 | 285 | 14 | 116 | 3.95e-47 | 157 |
Msa0103200 | MtrunA17_Chr3g0129871 | 44.444 | 72 | 35 | 1 | 1 | 72 | 1 | 67 | 3.76e-16 | 72.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0103200 | AT5G24330.1 | 72.642 | 318 | 84 | 3 | 26 | 341 | 33 | 349 | 1.91e-168 | 473 |
Msa0103200 | AT5G09790.2 | 59.875 | 319 | 123 | 2 | 25 | 341 | 64 | 379 | 7.67e-140 | 401 |
Msa0103200 | AT5G09790.1 | 60.063 | 318 | 123 | 2 | 25 | 341 | 64 | 378 | 2.93e-139 | 400 |
Find 81 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATGCATACATTTGGGGATTT+TGG | 0.088459 | 1_3:-10319243 | None:intergenic |
GCTATATTGCTACGTTTATC+TGG | 0.121333 | 1_3:-10321596 | None:intergenic |
CTTGAAGAAATCAATAATTT+TGG | 0.167292 | 1_3:-10319537 | None:intergenic |
ATTTGCCGGAGTTGCATTTC+TGG | 0.190452 | 1_3:-10319100 | None:intergenic |
AATATAGCACGTTTCATTAA+TGG | 0.211173 | 1_3:+10321611 | Msa0103200:CDS |
GAAATGAGAAGAGGAATAAT+AGG | 0.215544 | 1_3:-10318949 | None:intergenic |
CATTATATCTCACGCATTTC+AGG | 0.255009 | 1_3:-10322142 | None:intergenic |
GCATCCCTTGGCGCCATTCC+AGG | 0.276840 | 1_3:-10320389 | None:intergenic |
CGCAAAGAAGCAACTTAGTT+GGG | 0.323658 | 1_3:-10319124 | None:intergenic |
CAACTTAGTTGGGGATTTGC+CGG | 0.329908 | 1_3:-10319114 | None:intergenic |
GGGCAAAACCAAGAGGATTT+AGG | 0.342107 | 1_3:-10319203 | None:intergenic |
CTCCTCTTCAAATCATCATT+TGG | 0.347535 | 1_3:-10320290 | None:intergenic |
TGTAATTAAGTAGTAAGAAT+TGG | 0.361300 | 1_3:-10318923 | None:intergenic |
GGTGAAGCCATGGTGAGATT+TGG | 0.379936 | 1_3:-10319005 | None:intergenic |
TACAATAAGTTGTTATTGAC+AGG | 0.382876 | 1_3:-10322289 | None:intergenic |
GTCATCATCGTTGAAGGTTG+TGG | 0.391049 | 1_3:-10319066 | None:intergenic |
TTCTAATCCTTCACAGTCAT+TGG | 0.396878 | 1_3:+10321565 | Msa0103200:CDS |
GAGAAAGCGAAGTAGTAGTT+TGG | 0.400911 | 1_3:+10320229 | Msa0103200:CDS |
GTTGTTTATGATCCTGTAGA+AGG | 0.406850 | 1_3:+10321331 | Msa0103200:CDS |
TGGGAGCTGGAATTCTTCTT+CGG | 0.410162 | 1_3:-10319034 | None:intergenic |
GTGAAGCCATGGTGAGATTT+GGG | 0.417759 | 1_3:-10319004 | None:intergenic |
CTTCTGTACCTAAATCCTCT+TGG | 0.418430 | 1_3:+10319195 | Msa0103200:CDS |
GAGATATAGCAAAGGGAGAA+AGG | 0.428636 | 1_3:+10322201 | Msa0103200:CDS |
AAATGAGAAGAGGAATAATA+GGG | 0.435697 | 1_3:-10318948 | None:intergenic |
ACGTTCAAGAACAGGAGAAT+TGG | 0.452094 | 1_3:-10320411 | None:intergenic |
ATTCCTCCACGTTCAAGAAC+AGG | 0.452190 | 1_3:-10320419 | None:intergenic |
TCGCAAAGAAGCAACTTAGT+TGG | 0.454512 | 1_3:-10319125 | None:intergenic |
CTTTGCGACAATTGCGACAA+CGG | 0.472963 | 1_3:+10319140 | Msa0103200:CDS |
CGCGTTGACTGCTACTAAAA+CGG | 0.476912 | 1_3:+10320340 | Msa0103200:CDS |
TAGGTGTGAGGCAGAAGAGA+TGG | 0.477113 | 1_3:-10319166 | None:intergenic |
CTATATTGCTACGTTTATCT+GGG | 0.481139 | 1_3:-10321595 | None:intergenic |
TGCGTGAGATATAATGTTGA+TGG | 0.484685 | 1_3:+10322149 | Msa0103200:CDS |
AAAGCGAAGTAGTAGTTTGG+TGG | 0.487978 | 1_3:+10320232 | Msa0103200:CDS |
ACAATAATAACAGAATATGT+TGG | 0.490743 | 1_3:+10321476 | Msa0103200:CDS |
CAAGAGGATTTAGGTACAGA+AGG | 0.492170 | 1_3:-10319194 | None:intergenic |
TAACTTGTGCAGAAGTATGA+TGG | 0.493269 | 1_3:+10321282 | Msa0103200:CDS |
TTTGGGATTTGAGAATGAAT+CGG | 0.499862 | 1_3:-10318987 | None:intergenic |
TTAGGTACAGAAGGGAGGAT+AGG | 0.500711 | 1_3:-10319185 | None:intergenic |
GACGTCGTCATCATCGTTGA+AGG | 0.512130 | 1_3:-10319072 | None:intergenic |
GCATCTAAGATTCTGAATCA+TGG | 0.512650 | 1_3:+10319578 | Msa0103200:CDS |
ATAAGTACTTACCCTTCTAC+AGG | 0.515050 | 1_3:-10321343 | None:intergenic |
ATTAGAACAGATGGCGTCGT+TGG | 0.518768 | 1_3:+10320313 | Msa0103200:CDS |
GCAAATAGAGATATAGCAAA+GGG | 0.521433 | 1_3:+10322194 | Msa0103200:CDS |
AATGAGCTTACGTACATGCC+TGG | 0.527386 | 1_3:+10320371 | Msa0103200:CDS |
AGGAGAATGTCCACCCCTCA+TGG | 0.536801 | 1_3:+10321309 | Msa0103200:CDS |
ACAGGAGAATTGGCATCCCT+TGG | 0.541184 | 1_3:-10320401 | None:intergenic |
TCTTGAACGTGGAGGAATGC+AGG | 0.541405 | 1_3:+10320424 | Msa0103200:CDS |
AATTAGACAAAATGTTCAGT+TGG | 0.544685 | 1_3:-10322260 | None:intergenic |
AAGAATCGGGAATATGATGA+TGG | 0.544853 | 1_3:+10321515 | Msa0103200:CDS |
TGCAGAAGTATGATGGAAAG+AGG | 0.546783 | 1_3:+10321289 | Msa0103200:CDS |
TGGGGTTGTGAGAGCAGGAA+GGG | 0.547853 | 1_3:-10319223 | None:intergenic |
TAAGTAGTAAGAATTGGAAG+AGG | 0.548910 | 1_3:-10318917 | None:intergenic |
AAGAAATGAGAAATGAGAAG+AGG | 0.549396 | 1_3:-10318958 | None:intergenic |
AATTCTCCTGTTCTTGAACG+TGG | 0.561001 | 1_3:+10320413 | Msa0103200:CDS |
CATGCCTGGAATGGCGCCAA+GGG | 0.564637 | 1_3:+10320385 | Msa0103200:CDS |
TGCAAATAGAGATATAGCAA+AGG | 0.569319 | 1_3:+10322193 | Msa0103200:CDS |
GGAATTCTTCTTCGGCGAAG+TGG | 0.581802 | 1_3:-10319026 | None:intergenic |
TCGGCGAAGTGGTGAAGCCA+TGG | 0.586776 | 1_3:-10319015 | None:intergenic |
ACATGCCTGGAATGGCGCCA+AGG | 0.588883 | 1_3:+10320384 | Msa0103200:CDS |
CAGAATCTTAGATGCATCAA+CGG | 0.589395 | 1_3:-10319570 | None:intergenic |
TGCCAAATGATGATTTGAAG+AGG | 0.592036 | 1_3:+10320288 | Msa0103200:CDS |
GAAGAGGAGATTAGAACAGA+TGG | 0.593117 | 1_3:+10320304 | Msa0103200:CDS |
TGAAAGGATGCATACATTTG+GGG | 0.604501 | 1_3:-10319250 | None:intergenic |
GCTTACGTACATGCCTGGAA+TGG | 0.609175 | 1_3:+10320376 | Msa0103200:CDS |
TTGGGGTTGTGAGAGCAGGA+AGG | 0.612150 | 1_3:-10319224 | None:intergenic |
TTGTTTATGATCCTGTAGAA+GGG | 0.614616 | 1_3:+10321332 | Msa0103200:CDS |
TCTGCACAAGTTAAGAGTCT+CGG | 0.617054 | 1_3:-10321272 | None:intergenic |
GCAAAGAAGCAACTTAGTTG+GGG | 0.617673 | 1_3:-10319123 | None:intergenic |
AAGAGGATTTAGGTACAGAA+GGG | 0.621884 | 1_3:-10319193 | None:intergenic |
GTTTGCCAGAAATGCAACTC+CGG | 0.639299 | 1_3:+10319095 | Msa0103200:CDS |
TCATAAACAACCATGAGGGG+TGG | 0.646583 | 1_3:-10321319 | None:intergenic |
AGGATTTAGGTACAGAAGGG+AGG | 0.647659 | 1_3:-10319190 | None:intergenic |
TCTCCTGTTCTTGAACGTGG+AGG | 0.653986 | 1_3:+10320416 | Msa0103200:CDS |
CAGAAGGGAGGATAGGTGTG+AGG | 0.654698 | 1_3:-10319178 | None:intergenic |
TCAAATCCCAAATCTCACCA+TGG | 0.657568 | 1_3:+10318998 | Msa0103200:exon |
AGGTTGTATTATGACTACAA+TGG | 0.669535 | 1_3:+10322221 | Msa0103200:CDS |
AGGATCATAAACAACCATGA+GGG | 0.679161 | 1_3:-10321323 | None:intergenic |
GGATCATAAACAACCATGAG+GGG | 0.684429 | 1_3:-10321322 | None:intergenic |
CAGGATCATAAACAACCATG+AGG | 0.704323 | 1_3:-10321324 | None:intergenic |
GCAGGAAGGGCAAAACCAAG+AGG | 0.707902 | 1_3:-10319210 | None:intergenic |
CAGATGACCAATGACTGTGA+AGG | 0.726114 | 1_3:-10321572 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTAATTTTCTTTTTTTTGT+AGG | + | chr1_3:10321417-10321436 | Msa0103200:intron | 10.0% |
!!! | TAATGTTTAGAGAATTTTAT+TGG | + | chr1_3:10319640-10319659 | Msa0103200:intron | 15.0% |
!! | AAAAAAGAAAATTAAAAGTC+AGG | - | chr1_3:10321413-10321432 | None:intergenic | 15.0% |
!!! | TATTATTGTCAAATCTTTTA+TGG | - | chr1_3:10321465-10321484 | None:intergenic | 15.0% |
!! | AATATAATATAGTGAGAAAT+TGG | + | chr1_3:10321718-10321737 | Msa0103200:intron | 15.0% |
!! | TGTAATTAAGTAGTAAGAAT+TGG | - | chr1_3:10318926-10318945 | None:intergenic | 20.0% |
!! | ATGAAATGAAATCAAATGAA+AGG | - | chr1_3:10319269-10319288 | None:intergenic | 20.0% |
!! | TTTAATAACGTTATTAGATC+TGG | + | chr1_3:10319417-10319436 | Msa0103200:intron | 20.0% |
!!! | CTTGAAGAAATCAATAATTT+TGG | - | chr1_3:10319540-10319559 | None:intergenic | 20.0% |
!!! | TTAGGTATTATATTGTTGTT+AGG | + | chr1_3:10320476-10320495 | Msa0103200:intron | 20.0% |
!! | TTAATTGAAAAATTCTACTG+TGG | + | chr1_3:10320577-10320596 | Msa0103200:intron | 20.0% |
!!! | GTTTGTATATATTTTTTCTC+AGG | + | chr1_3:10321231-10321250 | Msa0103200:intron | 20.0% |
!! | ACAATAATAACAGAATATGT+TGG | + | chr1_3:10321476-10321495 | Msa0103200:CDS | 20.0% |
!! | CAGAGAATAAAATTTGAAAA+AGG | - | chr1_3:10321666-10321685 | None:intergenic | 20.0% |
!! | TTCATCTTAAAGAATGTTAT+CGG | + | chr1_3:10321745-10321764 | Msa0103200:intron | 20.0% |
! | AAATGAGAAGAGGAATAATA+GGG | - | chr1_3:10318951-10318970 | None:intergenic | 25.0% |
!!! | ATAATTTTGGTTTGTACAAG+AGG | - | chr1_3:10319527-10319546 | None:intergenic | 25.0% |
!! | GTTTAGAGAATTTTATTGGA+TGG | + | chr1_3:10319644-10319663 | Msa0103200:intron | 25.0% |
! | GTTTGGATTAACAGTTTATT+TGG | + | chr1_3:10319682-10319701 | Msa0103200:intron | 25.0% |
!! | ATAACTTTTGTAAGACTGTT+TGG | - | chr1_3:10320110-10320129 | None:intergenic | 25.0% |
! | AAAAAAGAAAAGGAAGTTGT+TGG | + | chr1_3:10320259-10320278 | Msa0103200:CDS | 25.0% |
!!! | CTTAATTGAGTTTGTTAGTT+AGG | + | chr1_3:10320458-10320477 | Msa0103200:intron | 25.0% |
!!! | TATTGTTGTTAGGATACTTT+TGG | + | chr1_3:10320486-10320505 | Msa0103200:intron | 25.0% |
!! | TTAGGTTGTCAATACTAATT+AGG | + | chr1_3:10320814-10320833 | Msa0103200:intron | 25.0% |
!!! | ATGTAGACTTTTTGAAGAAT+CGG | + | chr1_3:10321501-10321520 | Msa0103200:CDS | 25.0% |
! | AATATAGCACGTTTCATTAA+TGG | + | chr1_3:10321611-10321630 | Msa0103200:CDS | 25.0% |
! | TTGAAAAAGGAAGAAACATA+CGG | - | chr1_3:10321653-10321672 | None:intergenic | 25.0% |
!! | ATTTTATTCTCTGCATATGT+AGG | + | chr1_3:10321673-10321692 | Msa0103200:intron | 25.0% |
!!! | TCTTGTTTTGTGTTTTAGAA+AGG | + | chr1_3:10321799-10321818 | Msa0103200:intron | 25.0% |
!!! | CTTGTTTTGTGTTTTAGAAA+GGG | + | chr1_3:10321800-10321819 | Msa0103200:intron | 25.0% |
!!! | TTGTTTTGTGTTTTAGAAAG+GGG | + | chr1_3:10321801-10321820 | Msa0103200:intron | 25.0% |
! | AATTAGACAAAATGTTCAGT+TGG | - | chr1_3:10322263-10322282 | None:intergenic | 25.0% |
TAAGTAGTAAGAATTGGAAG+AGG | - | chr1_3:10318920-10318939 | None:intergenic | 30.0% | |
GAAATGAGAAGAGGAATAAT+AGG | - | chr1_3:10318952-10318971 | None:intergenic | 30.0% | |
AAGAAATGAGAAATGAGAAG+AGG | - | chr1_3:10318961-10318980 | None:intergenic | 30.0% | |
! | TTTGGGATTTGAGAATGAAT+CGG | - | chr1_3:10318990-10319009 | None:intergenic | 30.0% |
!!! | AAGGTTGTGGATTGTTTTTT+GGG | - | chr1_3:10319056-10319075 | None:intergenic | 30.0% |
ATGAAAGGATGCATACATTT+GGG | - | chr1_3:10319254-10319273 | None:intergenic | 30.0% | |
AATGAAAGGATGCATACATT+TGG | - | chr1_3:10319255-10319274 | None:intergenic | 30.0% | |
CATTTCAATACGTCAATGTT+TGG | + | chr1_3:10319286-10319305 | Msa0103200:intron | 30.0% | |
! | GAGAATTTTATTGGATGGAT+TGG | + | chr1_3:10319649-10319668 | Msa0103200:intron | 30.0% |
!!! | TTTTATTGGATGGATTGGTT+TGG | + | chr1_3:10319654-10319673 | Msa0103200:intron | 30.0% |
!! | TTTATTGGATGGATTGGTTT+GGG | + | chr1_3:10319655-10319674 | Msa0103200:intron | 30.0% |
!!! | GCTGTTTTTACAAGTTATTG+TGG | + | chr1_3:10319779-10319798 | Msa0103200:intron | 30.0% |
! | TCTGTTTTCACAAGCTATTA+TGG | + | chr1_3:10319888-10319907 | Msa0103200:intron | 30.0% |
!! | CTATTTTTCACAACCTATTG+TGG | + | chr1_3:10319959-10319978 | Msa0103200:intron | 30.0% |
!! | GAAGTGTGTGTTTTAAATTG+TGG | + | chr1_3:10320186-10320205 | Msa0103200:intron | 30.0% |
TGGTGGTTTCAAAAAAGAAA+AGG | + | chr1_3:10320249-10320268 | Msa0103200:CDS | 30.0% | |
TGTTGAGTTATGTTTGTATG+AGG | + | chr1_3:10320549-10320568 | Msa0103200:intron | 30.0% | |
TGAGACATTGAATTGATTGT+TGG | + | chr1_3:10320703-10320722 | Msa0103200:intron | 30.0% | |
!! | TTGTTTTGTTGAACTGATAC+TGG | + | chr1_3:10320791-10320810 | Msa0103200:intron | 30.0% |
!! | AGTTTATACTTTTTGAGAGC+TGG | + | chr1_3:10320872-10320891 | Msa0103200:intron | 30.0% |
! | ACTTTGTTGCCTTTATTTCT+AGG | - | chr1_3:10321037-10321056 | None:intergenic | 30.0% |
TGCAATACTGAAGTATAAAG+TGG | + | chr1_3:10321058-10321077 | Msa0103200:intron | 30.0% | |
!! | CTACAAACTAGTTTGGATTT+TGG | + | chr1_3:10321086-10321105 | Msa0103200:intron | 30.0% |
TTGTTTATGATCCTGTAGAA+GGG | + | chr1_3:10321332-10321351 | Msa0103200:CDS | 30.0% | |
!! | TGTAGACTTTTTGAAGAATC+GGG | + | chr1_3:10321502-10321521 | Msa0103200:CDS | 30.0% |
CTATATTGCTACGTTTATCT+GGG | - | chr1_3:10321598-10321617 | None:intergenic | 30.0% | |
TAACTATCAATTGCTACTAC+TGG | - | chr1_3:10321838-10321857 | None:intergenic | 30.0% | |
CTCAAGTTAAACAGATTTCA+GGG | - | chr1_3:10321894-10321913 | None:intergenic | 30.0% | |
ACTCAAGTTAAACAGATTTC+AGG | - | chr1_3:10321895-10321914 | None:intergenic | 30.0% | |
!! | GTTTAGTGCAAATTGACTTT+TGG | + | chr1_3:10321917-10321936 | Msa0103200:intron | 30.0% |
CATCTTAGCATTACATGAAA+AGG | - | chr1_3:10321975-10321994 | None:intergenic | 30.0% | |
!!! | TTCTTGTTTTTATGCAGTGA+AGG | + | chr1_3:10322104-10322123 | Msa0103200:intron | 30.0% |
TGCAAATAGAGATATAGCAA+AGG | + | chr1_3:10322193-10322212 | Msa0103200:CDS | 30.0% | |
GCAAATAGAGATATAGCAAA+GGG | + | chr1_3:10322194-10322213 | Msa0103200:CDS | 30.0% | |
AGGTTGTATTATGACTACAA+TGG | + | chr1_3:10322221-10322240 | Msa0103200:CDS | 30.0% | |
!!! | GAAGGTTGTGGATTGTTTTT+TGG | - | chr1_3:10319057-10319076 | None:intergenic | 35.0% |
AAGAGGATTTAGGTACAGAA+GGG | - | chr1_3:10319196-10319215 | None:intergenic | 35.0% | |
! | TGCATACATTTGGGGATTTT+GGG | - | chr1_3:10319245-10319264 | None:intergenic | 35.0% |
! | ATGCATACATTTGGGGATTT+TGG | - | chr1_3:10319246-10319265 | None:intergenic | 35.0% |
TGAAAGGATGCATACATTTG+GGG | - | chr1_3:10319253-10319272 | None:intergenic | 35.0% | |
TCTATTGACGTTATGCTGTT+TGG | + | chr1_3:10319488-10319507 | Msa0103200:intron | 35.0% | |
! | CTATTGACGTTATGCTGTTT+GGG | + | chr1_3:10319489-10319508 | Msa0103200:intron | 35.0% |
CAGAATCTTAGATGCATCAA+CGG | - | chr1_3:10319573-10319592 | None:intergenic | 35.0% | |
! | GCATCTAAGATTCTGAATCA+TGG | + | chr1_3:10319578-10319597 | Msa0103200:CDS | 35.0% |
!! | GCTGTTTTCATAAGCTAATG+TGG | + | chr1_3:10319848-10319867 | Msa0103200:intron | 35.0% |
! | TAGCTTGTGAAAACAGTTGA+TGG | - | chr1_3:10320015-10320034 | None:intergenic | 35.0% |
TGCCAAATGATGATTTGAAG+AGG | + | chr1_3:10320288-10320307 | Msa0103200:CDS | 35.0% | |
CTCCTCTTCAAATCATCATT+TGG | - | chr1_3:10320293-10320312 | None:intergenic | 35.0% | |
GACATTGAATTGATTGTTGG+TGG | + | chr1_3:10320706-10320725 | Msa0103200:intron | 35.0% | |
! | TTGTTGAACTGATACTGGTT+AGG | + | chr1_3:10320796-10320815 | Msa0103200:intron | 35.0% |
TCGTCTTCATTTGTACAACT+AGG | - | chr1_3:10320847-10320866 | None:intergenic | 35.0% | |
!! | TTATACTTTTTGAGAGCTGG+TGG | + | chr1_3:10320875-10320894 | Msa0103200:intron | 35.0% |
TAATACAAGCGCAATGTCTT+TGG | + | chr1_3:10320925-10320944 | Msa0103200:intron | 35.0% | |
TCTCAACTTATGCTCAATGT+AGG | + | chr1_3:10320950-10320969 | Msa0103200:intron | 35.0% | |
GCAGTGTTACCTAGAAATAA+AGG | + | chr1_3:10321025-10321044 | Msa0103200:intron | 35.0% | |
CTGCACTATTTGTCATGATT+TGG | + | chr1_3:10321113-10321132 | Msa0103200:intron | 35.0% | |
GCTCTGATAATCTGATTAAG+TGG | - | chr1_3:10321163-10321182 | None:intergenic | 35.0% | |
! | TAACTTGTGCAGAAGTATGA+TGG | + | chr1_3:10321282-10321301 | Msa0103200:CDS | 35.0% |
AGGATCATAAACAACCATGA+GGG | - | chr1_3:10321326-10321345 | None:intergenic | 35.0% | |
GTTGTTTATGATCCTGTAGA+AGG | + | chr1_3:10321331-10321350 | Msa0103200:CDS | 35.0% | |
ATAAGTACTTACCCTTCTAC+AGG | - | chr1_3:10321346-10321365 | None:intergenic | 35.0% | |
AAGAATCGGGAATATGATGA+TGG | + | chr1_3:10321515-10321534 | Msa0103200:CDS | 35.0% | |
TTCTAATCCTTCACAGTCAT+TGG | + | chr1_3:10321565-10321584 | Msa0103200:CDS | 35.0% | |
GCTATATTGCTACGTTTATC+TGG | - | chr1_3:10321599-10321618 | None:intergenic | 35.0% | |
CATTATATCTCACGCATTTC+AGG | - | chr1_3:10322145-10322164 | None:intergenic | 35.0% | |
TGCGTGAGATATAATGTTGA+TGG | + | chr1_3:10322149-10322168 | Msa0103200:CDS | 35.0% | |
TCAAATCCCAAATCTCACCA+TGG | + | chr1_3:10318998-10319017 | Msa0103200:exon | 40.0% | |
GCAAAGAAGCAACTTAGTTG+GGG | - | chr1_3:10319126-10319145 | None:intergenic | 40.0% | |
CGCAAAGAAGCAACTTAGTT+GGG | - | chr1_3:10319127-10319146 | None:intergenic | 40.0% | |
TCGCAAAGAAGCAACTTAGT+TGG | - | chr1_3:10319128-10319147 | None:intergenic | 40.0% | |
CAAGAGGATTTAGGTACAGA+AGG | - | chr1_3:10319197-10319216 | None:intergenic | 40.0% | |
CTTCTGTACCTAAATCCTCT+TGG | + | chr1_3:10319195-10319214 | Msa0103200:CDS | 40.0% | |
! | GCATACATTTGGGGATTTTG+GGG | - | chr1_3:10319244-10319263 | None:intergenic | 40.0% |
TGGTATCACAGTGAGTTTGT+CGG | + | chr1_3:10319306-10319325 | Msa0103200:intron | 40.0% | |
ACCAAACATTCACAACACCT+AGG | + | chr1_3:10319352-10319371 | Msa0103200:intron | 40.0% | |
CCAAACATTCACAACACCTA+GGG | + | chr1_3:10319353-10319372 | Msa0103200:intron | 40.0% | |
! | ATTAGAGTATTCACGACCCT+AGG | - | chr1_3:10319372-10319391 | None:intergenic | 40.0% |
!! | GGATTGGTTTGGGTATTGTT+TGG | + | chr1_3:10319665-10319684 | Msa0103200:intron | 40.0% |
TTTCACATGCTCTCCACAAT+AGG | - | chr1_3:10319975-10319994 | None:intergenic | 40.0% | |
GAGAAAGCGAAGTAGTAGTT+TGG | + | chr1_3:10320229-10320248 | Msa0103200:CDS | 40.0% | |
AAAGCGAAGTAGTAGTTTGG+TGG | + | chr1_3:10320232-10320251 | Msa0103200:CDS | 40.0% | |
GAAGAGGAGATTAGAACAGA+TGG | + | chr1_3:10320304-10320323 | Msa0103200:CDS | 40.0% | |
ACGTTCAAGAACAGGAGAAT+TGG | - | chr1_3:10320414-10320433 | None:intergenic | 40.0% | |
AATTCTCCTGTTCTTGAACG+TGG | + | chr1_3:10320413-10320432 | Msa0103200:CDS | 40.0% | |
! | ATGTTGCCTCTTTGTTGTCA+TGG | + | chr1_3:10320671-10320690 | Msa0103200:intron | 40.0% |
TCTTAGCCATGACAACAAAG+AGG | - | chr1_3:10320680-10320699 | None:intergenic | 40.0% | |
GGTCTGTCTACAAACTAGTT+TGG | + | chr1_3:10321079-10321098 | Msa0103200:intron | 40.0% | |
TCTGCACAAGTTAAGAGTCT+CGG | - | chr1_3:10321275-10321294 | None:intergenic | 40.0% | |
! | TGCAGAAGTATGATGGAAAG+AGG | + | chr1_3:10321289-10321308 | Msa0103200:CDS | 40.0% |
GGATCATAAACAACCATGAG+GGG | - | chr1_3:10321325-10321344 | None:intergenic | 40.0% | |
CAGGATCATAAACAACCATG+AGG | - | chr1_3:10321327-10321346 | None:intergenic | 40.0% | |
GAATAGCACTAATATCCACC+TGG | + | chr1_3:10321949-10321968 | Msa0103200:intron | 40.0% | |
TAGCATTACATGAAAAGGCC+AGG | - | chr1_3:10321970-10321989 | None:intergenic | 40.0% | |
GAGATATAGCAAAGGGAGAA+AGG | + | chr1_3:10322201-10322220 | Msa0103200:CDS | 40.0% | |
GTGAAGCCATGGTGAGATTT+GGG | - | chr1_3:10319007-10319026 | None:intergenic | 45.0% | |
TGGGAGCTGGAATTCTTCTT+CGG | - | chr1_3:10319037-10319056 | None:intergenic | 45.0% | |
!!! | GTGGATTGTTTTTTGGGAGC+TGG | - | chr1_3:10319050-10319069 | None:intergenic | 45.0% |
GTCATCATCGTTGAAGGTTG+TGG | - | chr1_3:10319069-10319088 | None:intergenic | 45.0% | |
GTTTGCCAGAAATGCAACTC+CGG | + | chr1_3:10319095-10319114 | Msa0103200:CDS | 45.0% | |
ATTTGCCGGAGTTGCATTTC+TGG | - | chr1_3:10319103-10319122 | None:intergenic | 45.0% | |
CAACTTAGTTGGGGATTTGC+CGG | - | chr1_3:10319117-10319136 | None:intergenic | 45.0% | |
CTTTGCGACAATTGCGACAA+CGG | + | chr1_3:10319140-10319159 | Msa0103200:CDS | 45.0% | |
TTAGGTACAGAAGGGAGGAT+AGG | - | chr1_3:10319188-10319207 | None:intergenic | 45.0% | |
AGGATTTAGGTACAGAAGGG+AGG | - | chr1_3:10319193-10319212 | None:intergenic | 45.0% | |
GGGCAAAACCAAGAGGATTT+AGG | - | chr1_3:10319206-10319225 | None:intergenic | 45.0% | |
! | CCCTAGGTGTTGTGAATGTT+TGG | - | chr1_3:10319356-10319375 | None:intergenic | 45.0% |
ATTAGAACAGATGGCGTCGT+TGG | + | chr1_3:10320313-10320332 | Msa0103200:CDS | 45.0% | |
!! | CGTTTTAGTAGCAGTCAACG+CGG | - | chr1_3:10320342-10320361 | None:intergenic | 45.0% |
!! | CGCGTTGACTGCTACTAAAA+CGG | + | chr1_3:10320340-10320359 | Msa0103200:CDS | 45.0% |
AATGAGCTTACGTACATGCC+TGG | + | chr1_3:10320371-10320390 | Msa0103200:CDS | 45.0% | |
ATTCCTCCACGTTCAAGAAC+AGG | - | chr1_3:10320422-10320441 | None:intergenic | 45.0% | |
TTGCATCTCAGTGTGCATGT+TGG | + | chr1_3:10320518-10320537 | Msa0103200:intron | 45.0% | |
! | CAGTGTGCATGTTGGTTGTT+TGG | + | chr1_3:10320526-10320545 | Msa0103200:intron | 45.0% |
TCTAGGTAACACTGCGTACT+AGG | - | chr1_3:10321020-10321039 | None:intergenic | 45.0% | |
TCATAAACAACCATGAGGGG+TGG | - | chr1_3:10321322-10321341 | None:intergenic | 45.0% | |
CAGATGACCAATGACTGTGA+AGG | - | chr1_3:10321575-10321594 | None:intergenic | 45.0% | |
CATTACATGAAAAGGCCAGG+TGG | - | chr1_3:10321967-10321986 | None:intergenic | 45.0% | |
!! | ATATTATATTATTGTATTTA+GGG | - | chr1_3:10321708-10321727 | None:intergenic | 5.0% |
!! | TATATTATATTATTGTATTT+AGG | - | chr1_3:10321709-10321728 | None:intergenic | 5.0% |
GGTGAAGCCATGGTGAGATT+TGG | - | chr1_3:10319008-10319027 | None:intergenic | 50.0% | |
GGAATTCTTCTTCGGCGAAG+TGG | - | chr1_3:10319029-10319048 | None:intergenic | 50.0% | |
GACGTCGTCATCATCGTTGA+AGG | - | chr1_3:10319075-10319094 | None:intergenic | 50.0% | |
TAGGTGTGAGGCAGAAGAGA+TGG | - | chr1_3:10319169-10319188 | None:intergenic | 50.0% | |
!!! | GATTTTGGGGTTGTGAGAGC+AGG | - | chr1_3:10319231-10319250 | None:intergenic | 50.0% |
GCTTACGTACATGCCTGGAA+TGG | + | chr1_3:10320376-10320395 | Msa0103200:CDS | 50.0% | |
ACAGGAGAATTGGCATCCCT+TGG | - | chr1_3:10320404-10320423 | None:intergenic | 50.0% | |
TCTCCTGTTCTTGAACGTGG+AGG | + | chr1_3:10320416-10320435 | Msa0103200:CDS | 50.0% | |
TCTTGAACGTGGAGGAATGC+AGG | + | chr1_3:10320424-10320443 | Msa0103200:CDS | 50.0% | |
CAGAAGGGAGGATAGGTGTG+AGG | - | chr1_3:10319181-10319200 | None:intergenic | 55.0% | |
GCAGGAAGGGCAAAACCAAG+AGG | - | chr1_3:10319213-10319232 | None:intergenic | 55.0% | |
TGGGGTTGTGAGAGCAGGAA+GGG | - | chr1_3:10319226-10319245 | None:intergenic | 55.0% | |
TTGGGGTTGTGAGAGCAGGA+AGG | - | chr1_3:10319227-10319246 | None:intergenic | 55.0% | |
AGGAGAATGTCCACCCCTCA+TGG | + | chr1_3:10321309-10321328 | Msa0103200:CDS | 55.0% | |
TCGGCGAAGTGGTGAAGCCA+TGG | - | chr1_3:10319018-10319037 | None:intergenic | 60.0% | |
ACATGCCTGGAATGGCGCCA+AGG | + | chr1_3:10320384-10320403 | Msa0103200:CDS | 60.0% | |
CATGCCTGGAATGGCGCCAA+GGG | + | chr1_3:10320385-10320404 | Msa0103200:CDS | 60.0% | |
GCATCCCTTGGCGCCATTCC+AGG | - | chr1_3:10320392-10320411 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_3 | gene | 10318916 | 10322299 | 10318916 | ID=Msa0103200;Name=Msa0103200 |
chr1_3 | mRNA | 10318916 | 10322299 | 10318916 | ID=Msa0103200-mRNA-1;Parent=Msa0103200;Name=Msa0103200-mRNA-1;_AED=0.39;_eAED=0.39;_QI=101|1|1|1|1|1|6|19|341 |
chr1_3 | exon | 10318916 | 10319257 | 10318916 | ID=Msa0103200-mRNA-1:exon:4300;Parent=Msa0103200-mRNA-1 |
chr1_3 | exon | 10319519 | 10319599 | 10319519 | ID=Msa0103200-mRNA-1:exon:4301;Parent=Msa0103200-mRNA-1 |
chr1_3 | exon | 10320216 | 10320445 | 10320216 | ID=Msa0103200-mRNA-1:exon:4302;Parent=Msa0103200-mRNA-1 |
chr1_3 | exon | 10321253 | 10321353 | 10321253 | ID=Msa0103200-mRNA-1:exon:4303;Parent=Msa0103200-mRNA-1 |
chr1_3 | exon | 10321439 | 10321651 | 10321439 | ID=Msa0103200-mRNA-1:exon:4304;Parent=Msa0103200-mRNA-1 |
chr1_3 | exon | 10322121 | 10322299 | 10322121 | ID=Msa0103200-mRNA-1:exon:4305;Parent=Msa0103200-mRNA-1 |
chr1_3 | five_prime_UTR | 10318916 | 10319016 | 10318916 | ID=Msa0103200-mRNA-1:five_prime_utr;Parent=Msa0103200-mRNA-1 |
chr1_3 | CDS | 10319017 | 10319257 | 10319017 | ID=Msa0103200-mRNA-1:cds;Parent=Msa0103200-mRNA-1 |
chr1_3 | CDS | 10319519 | 10319599 | 10319519 | ID=Msa0103200-mRNA-1:cds;Parent=Msa0103200-mRNA-1 |
chr1_3 | CDS | 10320216 | 10320445 | 10320216 | ID=Msa0103200-mRNA-1:cds;Parent=Msa0103200-mRNA-1 |
chr1_3 | CDS | 10321253 | 10321353 | 10321253 | ID=Msa0103200-mRNA-1:cds;Parent=Msa0103200-mRNA-1 |
chr1_3 | CDS | 10321439 | 10321651 | 10321439 | ID=Msa0103200-mRNA-1:cds;Parent=Msa0103200-mRNA-1 |
chr1_3 | CDS | 10322121 | 10322280 | 10322121 | ID=Msa0103200-mRNA-1:cds;Parent=Msa0103200-mRNA-1 |
chr1_3 | three_prime_UTR | 10322281 | 10322299 | 10322281 | ID=Msa0103200-mRNA-1:three_prime_utr;Parent=Msa0103200-mRNA-1 |
Gene Sequence |
Protein sequence |