AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0103200


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0103200 MtrunA17_Chr1g0146731 97.368 342 8 1 1 341 1 342 0.0 689
Msa0103200 MtrunA17_Chr1g0146761 68.023 344 73 7 1 341 51 360 2.56e-157 445
Msa0103200 MtrunA17_Chr3g0129881 60.870 322 123 2 22 341 70 390 1.95e-135 390
Msa0103200 MtrunA17_Chr1g0146751 82.031 128 23 0 184 311 69 196 4.81e-72 222
Msa0103200 MtrunA17_Chr1g0146741 68.902 164 26 2 116 264 27 180 9.19e-68 211
Msa0103200 MtrunA17_Chr8g0357751 73.786 103 26 1 184 285 14 116 3.95e-47 157
Msa0103200 MtrunA17_Chr3g0129871 44.444 72 35 1 1 72 1 67 3.76e-16 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0103200 AT5G24330.1 72.642 318 84 3 26 341 33 349 1.91e-168 473
Msa0103200 AT5G09790.2 59.875 319 123 2 25 341 64 379 7.67e-140 401
Msa0103200 AT5G09790.1 60.063 318 123 2 25 341 64 378 2.93e-139 400

Find 81 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGCATACATTTGGGGATTT+TGG 0.088459 1_3:-10319243 None:intergenic
GCTATATTGCTACGTTTATC+TGG 0.121333 1_3:-10321596 None:intergenic
CTTGAAGAAATCAATAATTT+TGG 0.167292 1_3:-10319537 None:intergenic
ATTTGCCGGAGTTGCATTTC+TGG 0.190452 1_3:-10319100 None:intergenic
AATATAGCACGTTTCATTAA+TGG 0.211173 1_3:+10321611 Msa0103200:CDS
GAAATGAGAAGAGGAATAAT+AGG 0.215544 1_3:-10318949 None:intergenic
CATTATATCTCACGCATTTC+AGG 0.255009 1_3:-10322142 None:intergenic
GCATCCCTTGGCGCCATTCC+AGG 0.276840 1_3:-10320389 None:intergenic
CGCAAAGAAGCAACTTAGTT+GGG 0.323658 1_3:-10319124 None:intergenic
CAACTTAGTTGGGGATTTGC+CGG 0.329908 1_3:-10319114 None:intergenic
GGGCAAAACCAAGAGGATTT+AGG 0.342107 1_3:-10319203 None:intergenic
CTCCTCTTCAAATCATCATT+TGG 0.347535 1_3:-10320290 None:intergenic
TGTAATTAAGTAGTAAGAAT+TGG 0.361300 1_3:-10318923 None:intergenic
GGTGAAGCCATGGTGAGATT+TGG 0.379936 1_3:-10319005 None:intergenic
TACAATAAGTTGTTATTGAC+AGG 0.382876 1_3:-10322289 None:intergenic
GTCATCATCGTTGAAGGTTG+TGG 0.391049 1_3:-10319066 None:intergenic
TTCTAATCCTTCACAGTCAT+TGG 0.396878 1_3:+10321565 Msa0103200:CDS
GAGAAAGCGAAGTAGTAGTT+TGG 0.400911 1_3:+10320229 Msa0103200:CDS
GTTGTTTATGATCCTGTAGA+AGG 0.406850 1_3:+10321331 Msa0103200:CDS
TGGGAGCTGGAATTCTTCTT+CGG 0.410162 1_3:-10319034 None:intergenic
GTGAAGCCATGGTGAGATTT+GGG 0.417759 1_3:-10319004 None:intergenic
CTTCTGTACCTAAATCCTCT+TGG 0.418430 1_3:+10319195 Msa0103200:CDS
GAGATATAGCAAAGGGAGAA+AGG 0.428636 1_3:+10322201 Msa0103200:CDS
AAATGAGAAGAGGAATAATA+GGG 0.435697 1_3:-10318948 None:intergenic
ACGTTCAAGAACAGGAGAAT+TGG 0.452094 1_3:-10320411 None:intergenic
ATTCCTCCACGTTCAAGAAC+AGG 0.452190 1_3:-10320419 None:intergenic
TCGCAAAGAAGCAACTTAGT+TGG 0.454512 1_3:-10319125 None:intergenic
CTTTGCGACAATTGCGACAA+CGG 0.472963 1_3:+10319140 Msa0103200:CDS
CGCGTTGACTGCTACTAAAA+CGG 0.476912 1_3:+10320340 Msa0103200:CDS
TAGGTGTGAGGCAGAAGAGA+TGG 0.477113 1_3:-10319166 None:intergenic
CTATATTGCTACGTTTATCT+GGG 0.481139 1_3:-10321595 None:intergenic
TGCGTGAGATATAATGTTGA+TGG 0.484685 1_3:+10322149 Msa0103200:CDS
AAAGCGAAGTAGTAGTTTGG+TGG 0.487978 1_3:+10320232 Msa0103200:CDS
ACAATAATAACAGAATATGT+TGG 0.490743 1_3:+10321476 Msa0103200:CDS
CAAGAGGATTTAGGTACAGA+AGG 0.492170 1_3:-10319194 None:intergenic
TAACTTGTGCAGAAGTATGA+TGG 0.493269 1_3:+10321282 Msa0103200:CDS
TTTGGGATTTGAGAATGAAT+CGG 0.499862 1_3:-10318987 None:intergenic
TTAGGTACAGAAGGGAGGAT+AGG 0.500711 1_3:-10319185 None:intergenic
GACGTCGTCATCATCGTTGA+AGG 0.512130 1_3:-10319072 None:intergenic
GCATCTAAGATTCTGAATCA+TGG 0.512650 1_3:+10319578 Msa0103200:CDS
ATAAGTACTTACCCTTCTAC+AGG 0.515050 1_3:-10321343 None:intergenic
ATTAGAACAGATGGCGTCGT+TGG 0.518768 1_3:+10320313 Msa0103200:CDS
GCAAATAGAGATATAGCAAA+GGG 0.521433 1_3:+10322194 Msa0103200:CDS
AATGAGCTTACGTACATGCC+TGG 0.527386 1_3:+10320371 Msa0103200:CDS
AGGAGAATGTCCACCCCTCA+TGG 0.536801 1_3:+10321309 Msa0103200:CDS
ACAGGAGAATTGGCATCCCT+TGG 0.541184 1_3:-10320401 None:intergenic
TCTTGAACGTGGAGGAATGC+AGG 0.541405 1_3:+10320424 Msa0103200:CDS
AATTAGACAAAATGTTCAGT+TGG 0.544685 1_3:-10322260 None:intergenic
AAGAATCGGGAATATGATGA+TGG 0.544853 1_3:+10321515 Msa0103200:CDS
TGCAGAAGTATGATGGAAAG+AGG 0.546783 1_3:+10321289 Msa0103200:CDS
TGGGGTTGTGAGAGCAGGAA+GGG 0.547853 1_3:-10319223 None:intergenic
TAAGTAGTAAGAATTGGAAG+AGG 0.548910 1_3:-10318917 None:intergenic
AAGAAATGAGAAATGAGAAG+AGG 0.549396 1_3:-10318958 None:intergenic
AATTCTCCTGTTCTTGAACG+TGG 0.561001 1_3:+10320413 Msa0103200:CDS
CATGCCTGGAATGGCGCCAA+GGG 0.564637 1_3:+10320385 Msa0103200:CDS
TGCAAATAGAGATATAGCAA+AGG 0.569319 1_3:+10322193 Msa0103200:CDS
GGAATTCTTCTTCGGCGAAG+TGG 0.581802 1_3:-10319026 None:intergenic
TCGGCGAAGTGGTGAAGCCA+TGG 0.586776 1_3:-10319015 None:intergenic
ACATGCCTGGAATGGCGCCA+AGG 0.588883 1_3:+10320384 Msa0103200:CDS
CAGAATCTTAGATGCATCAA+CGG 0.589395 1_3:-10319570 None:intergenic
TGCCAAATGATGATTTGAAG+AGG 0.592036 1_3:+10320288 Msa0103200:CDS
GAAGAGGAGATTAGAACAGA+TGG 0.593117 1_3:+10320304 Msa0103200:CDS
TGAAAGGATGCATACATTTG+GGG 0.604501 1_3:-10319250 None:intergenic
GCTTACGTACATGCCTGGAA+TGG 0.609175 1_3:+10320376 Msa0103200:CDS
TTGGGGTTGTGAGAGCAGGA+AGG 0.612150 1_3:-10319224 None:intergenic
TTGTTTATGATCCTGTAGAA+GGG 0.614616 1_3:+10321332 Msa0103200:CDS
TCTGCACAAGTTAAGAGTCT+CGG 0.617054 1_3:-10321272 None:intergenic
GCAAAGAAGCAACTTAGTTG+GGG 0.617673 1_3:-10319123 None:intergenic
AAGAGGATTTAGGTACAGAA+GGG 0.621884 1_3:-10319193 None:intergenic
GTTTGCCAGAAATGCAACTC+CGG 0.639299 1_3:+10319095 Msa0103200:CDS
TCATAAACAACCATGAGGGG+TGG 0.646583 1_3:-10321319 None:intergenic
AGGATTTAGGTACAGAAGGG+AGG 0.647659 1_3:-10319190 None:intergenic
TCTCCTGTTCTTGAACGTGG+AGG 0.653986 1_3:+10320416 Msa0103200:CDS
CAGAAGGGAGGATAGGTGTG+AGG 0.654698 1_3:-10319178 None:intergenic
TCAAATCCCAAATCTCACCA+TGG 0.657568 1_3:+10318998 Msa0103200:exon
AGGTTGTATTATGACTACAA+TGG 0.669535 1_3:+10322221 Msa0103200:CDS
AGGATCATAAACAACCATGA+GGG 0.679161 1_3:-10321323 None:intergenic
GGATCATAAACAACCATGAG+GGG 0.684429 1_3:-10321322 None:intergenic
CAGGATCATAAACAACCATG+AGG 0.704323 1_3:-10321324 None:intergenic
GCAGGAAGGGCAAAACCAAG+AGG 0.707902 1_3:-10319210 None:intergenic
CAGATGACCAATGACTGTGA+AGG 0.726114 1_3:-10321572 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAATTTTCTTTTTTTTGT+AGG + chr1_3:10321417-10321436 Msa0103200:intron 10.0%
!!! TAATGTTTAGAGAATTTTAT+TGG + chr1_3:10319640-10319659 Msa0103200:intron 15.0%
!! AAAAAAGAAAATTAAAAGTC+AGG - chr1_3:10321413-10321432 None:intergenic 15.0%
!!! TATTATTGTCAAATCTTTTA+TGG - chr1_3:10321465-10321484 None:intergenic 15.0%
!! AATATAATATAGTGAGAAAT+TGG + chr1_3:10321718-10321737 Msa0103200:intron 15.0%
!! TGTAATTAAGTAGTAAGAAT+TGG - chr1_3:10318926-10318945 None:intergenic 20.0%
!! ATGAAATGAAATCAAATGAA+AGG - chr1_3:10319269-10319288 None:intergenic 20.0%
!! TTTAATAACGTTATTAGATC+TGG + chr1_3:10319417-10319436 Msa0103200:intron 20.0%
!!! CTTGAAGAAATCAATAATTT+TGG - chr1_3:10319540-10319559 None:intergenic 20.0%
!!! TTAGGTATTATATTGTTGTT+AGG + chr1_3:10320476-10320495 Msa0103200:intron 20.0%
!! TTAATTGAAAAATTCTACTG+TGG + chr1_3:10320577-10320596 Msa0103200:intron 20.0%
!!! GTTTGTATATATTTTTTCTC+AGG + chr1_3:10321231-10321250 Msa0103200:intron 20.0%
!! ACAATAATAACAGAATATGT+TGG + chr1_3:10321476-10321495 Msa0103200:CDS 20.0%
!! CAGAGAATAAAATTTGAAAA+AGG - chr1_3:10321666-10321685 None:intergenic 20.0%
!! TTCATCTTAAAGAATGTTAT+CGG + chr1_3:10321745-10321764 Msa0103200:intron 20.0%
! AAATGAGAAGAGGAATAATA+GGG - chr1_3:10318951-10318970 None:intergenic 25.0%
!!! ATAATTTTGGTTTGTACAAG+AGG - chr1_3:10319527-10319546 None:intergenic 25.0%
!! GTTTAGAGAATTTTATTGGA+TGG + chr1_3:10319644-10319663 Msa0103200:intron 25.0%
! GTTTGGATTAACAGTTTATT+TGG + chr1_3:10319682-10319701 Msa0103200:intron 25.0%
!! ATAACTTTTGTAAGACTGTT+TGG - chr1_3:10320110-10320129 None:intergenic 25.0%
! AAAAAAGAAAAGGAAGTTGT+TGG + chr1_3:10320259-10320278 Msa0103200:CDS 25.0%
!!! CTTAATTGAGTTTGTTAGTT+AGG + chr1_3:10320458-10320477 Msa0103200:intron 25.0%
!!! TATTGTTGTTAGGATACTTT+TGG + chr1_3:10320486-10320505 Msa0103200:intron 25.0%
!! TTAGGTTGTCAATACTAATT+AGG + chr1_3:10320814-10320833 Msa0103200:intron 25.0%
!!! ATGTAGACTTTTTGAAGAAT+CGG + chr1_3:10321501-10321520 Msa0103200:CDS 25.0%
! AATATAGCACGTTTCATTAA+TGG + chr1_3:10321611-10321630 Msa0103200:CDS 25.0%
! TTGAAAAAGGAAGAAACATA+CGG - chr1_3:10321653-10321672 None:intergenic 25.0%
!! ATTTTATTCTCTGCATATGT+AGG + chr1_3:10321673-10321692 Msa0103200:intron 25.0%
!!! TCTTGTTTTGTGTTTTAGAA+AGG + chr1_3:10321799-10321818 Msa0103200:intron 25.0%
!!! CTTGTTTTGTGTTTTAGAAA+GGG + chr1_3:10321800-10321819 Msa0103200:intron 25.0%
!!! TTGTTTTGTGTTTTAGAAAG+GGG + chr1_3:10321801-10321820 Msa0103200:intron 25.0%
! AATTAGACAAAATGTTCAGT+TGG - chr1_3:10322263-10322282 None:intergenic 25.0%
TAAGTAGTAAGAATTGGAAG+AGG - chr1_3:10318920-10318939 None:intergenic 30.0%
GAAATGAGAAGAGGAATAAT+AGG - chr1_3:10318952-10318971 None:intergenic 30.0%
AAGAAATGAGAAATGAGAAG+AGG - chr1_3:10318961-10318980 None:intergenic 30.0%
! TTTGGGATTTGAGAATGAAT+CGG - chr1_3:10318990-10319009 None:intergenic 30.0%
!!! AAGGTTGTGGATTGTTTTTT+GGG - chr1_3:10319056-10319075 None:intergenic 30.0%
ATGAAAGGATGCATACATTT+GGG - chr1_3:10319254-10319273 None:intergenic 30.0%
AATGAAAGGATGCATACATT+TGG - chr1_3:10319255-10319274 None:intergenic 30.0%
CATTTCAATACGTCAATGTT+TGG + chr1_3:10319286-10319305 Msa0103200:intron 30.0%
! GAGAATTTTATTGGATGGAT+TGG + chr1_3:10319649-10319668 Msa0103200:intron 30.0%
!!! TTTTATTGGATGGATTGGTT+TGG + chr1_3:10319654-10319673 Msa0103200:intron 30.0%
!! TTTATTGGATGGATTGGTTT+GGG + chr1_3:10319655-10319674 Msa0103200:intron 30.0%
!!! GCTGTTTTTACAAGTTATTG+TGG + chr1_3:10319779-10319798 Msa0103200:intron 30.0%
! TCTGTTTTCACAAGCTATTA+TGG + chr1_3:10319888-10319907 Msa0103200:intron 30.0%
!! CTATTTTTCACAACCTATTG+TGG + chr1_3:10319959-10319978 Msa0103200:intron 30.0%
!! GAAGTGTGTGTTTTAAATTG+TGG + chr1_3:10320186-10320205 Msa0103200:intron 30.0%
TGGTGGTTTCAAAAAAGAAA+AGG + chr1_3:10320249-10320268 Msa0103200:CDS 30.0%
TGTTGAGTTATGTTTGTATG+AGG + chr1_3:10320549-10320568 Msa0103200:intron 30.0%
TGAGACATTGAATTGATTGT+TGG + chr1_3:10320703-10320722 Msa0103200:intron 30.0%
!! TTGTTTTGTTGAACTGATAC+TGG + chr1_3:10320791-10320810 Msa0103200:intron 30.0%
!! AGTTTATACTTTTTGAGAGC+TGG + chr1_3:10320872-10320891 Msa0103200:intron 30.0%
! ACTTTGTTGCCTTTATTTCT+AGG - chr1_3:10321037-10321056 None:intergenic 30.0%
TGCAATACTGAAGTATAAAG+TGG + chr1_3:10321058-10321077 Msa0103200:intron 30.0%
!! CTACAAACTAGTTTGGATTT+TGG + chr1_3:10321086-10321105 Msa0103200:intron 30.0%
TTGTTTATGATCCTGTAGAA+GGG + chr1_3:10321332-10321351 Msa0103200:CDS 30.0%
!! TGTAGACTTTTTGAAGAATC+GGG + chr1_3:10321502-10321521 Msa0103200:CDS 30.0%
CTATATTGCTACGTTTATCT+GGG - chr1_3:10321598-10321617 None:intergenic 30.0%
TAACTATCAATTGCTACTAC+TGG - chr1_3:10321838-10321857 None:intergenic 30.0%
CTCAAGTTAAACAGATTTCA+GGG - chr1_3:10321894-10321913 None:intergenic 30.0%
ACTCAAGTTAAACAGATTTC+AGG - chr1_3:10321895-10321914 None:intergenic 30.0%
!! GTTTAGTGCAAATTGACTTT+TGG + chr1_3:10321917-10321936 Msa0103200:intron 30.0%
CATCTTAGCATTACATGAAA+AGG - chr1_3:10321975-10321994 None:intergenic 30.0%
!!! TTCTTGTTTTTATGCAGTGA+AGG + chr1_3:10322104-10322123 Msa0103200:intron 30.0%
TGCAAATAGAGATATAGCAA+AGG + chr1_3:10322193-10322212 Msa0103200:CDS 30.0%
GCAAATAGAGATATAGCAAA+GGG + chr1_3:10322194-10322213 Msa0103200:CDS 30.0%
AGGTTGTATTATGACTACAA+TGG + chr1_3:10322221-10322240 Msa0103200:CDS 30.0%
!!! GAAGGTTGTGGATTGTTTTT+TGG - chr1_3:10319057-10319076 None:intergenic 35.0%
AAGAGGATTTAGGTACAGAA+GGG - chr1_3:10319196-10319215 None:intergenic 35.0%
! TGCATACATTTGGGGATTTT+GGG - chr1_3:10319245-10319264 None:intergenic 35.0%
! ATGCATACATTTGGGGATTT+TGG - chr1_3:10319246-10319265 None:intergenic 35.0%
TGAAAGGATGCATACATTTG+GGG - chr1_3:10319253-10319272 None:intergenic 35.0%
TCTATTGACGTTATGCTGTT+TGG + chr1_3:10319488-10319507 Msa0103200:intron 35.0%
! CTATTGACGTTATGCTGTTT+GGG + chr1_3:10319489-10319508 Msa0103200:intron 35.0%
CAGAATCTTAGATGCATCAA+CGG - chr1_3:10319573-10319592 None:intergenic 35.0%
! GCATCTAAGATTCTGAATCA+TGG + chr1_3:10319578-10319597 Msa0103200:CDS 35.0%
!! GCTGTTTTCATAAGCTAATG+TGG + chr1_3:10319848-10319867 Msa0103200:intron 35.0%
! TAGCTTGTGAAAACAGTTGA+TGG - chr1_3:10320015-10320034 None:intergenic 35.0%
TGCCAAATGATGATTTGAAG+AGG + chr1_3:10320288-10320307 Msa0103200:CDS 35.0%
CTCCTCTTCAAATCATCATT+TGG - chr1_3:10320293-10320312 None:intergenic 35.0%
GACATTGAATTGATTGTTGG+TGG + chr1_3:10320706-10320725 Msa0103200:intron 35.0%
! TTGTTGAACTGATACTGGTT+AGG + chr1_3:10320796-10320815 Msa0103200:intron 35.0%
TCGTCTTCATTTGTACAACT+AGG - chr1_3:10320847-10320866 None:intergenic 35.0%
!! TTATACTTTTTGAGAGCTGG+TGG + chr1_3:10320875-10320894 Msa0103200:intron 35.0%
TAATACAAGCGCAATGTCTT+TGG + chr1_3:10320925-10320944 Msa0103200:intron 35.0%
TCTCAACTTATGCTCAATGT+AGG + chr1_3:10320950-10320969 Msa0103200:intron 35.0%
GCAGTGTTACCTAGAAATAA+AGG + chr1_3:10321025-10321044 Msa0103200:intron 35.0%
CTGCACTATTTGTCATGATT+TGG + chr1_3:10321113-10321132 Msa0103200:intron 35.0%
GCTCTGATAATCTGATTAAG+TGG - chr1_3:10321163-10321182 None:intergenic 35.0%
! TAACTTGTGCAGAAGTATGA+TGG + chr1_3:10321282-10321301 Msa0103200:CDS 35.0%
AGGATCATAAACAACCATGA+GGG - chr1_3:10321326-10321345 None:intergenic 35.0%
GTTGTTTATGATCCTGTAGA+AGG + chr1_3:10321331-10321350 Msa0103200:CDS 35.0%
ATAAGTACTTACCCTTCTAC+AGG - chr1_3:10321346-10321365 None:intergenic 35.0%
AAGAATCGGGAATATGATGA+TGG + chr1_3:10321515-10321534 Msa0103200:CDS 35.0%
TTCTAATCCTTCACAGTCAT+TGG + chr1_3:10321565-10321584 Msa0103200:CDS 35.0%
GCTATATTGCTACGTTTATC+TGG - chr1_3:10321599-10321618 None:intergenic 35.0%
CATTATATCTCACGCATTTC+AGG - chr1_3:10322145-10322164 None:intergenic 35.0%
TGCGTGAGATATAATGTTGA+TGG + chr1_3:10322149-10322168 Msa0103200:CDS 35.0%
TCAAATCCCAAATCTCACCA+TGG + chr1_3:10318998-10319017 Msa0103200:exon 40.0%
GCAAAGAAGCAACTTAGTTG+GGG - chr1_3:10319126-10319145 None:intergenic 40.0%
CGCAAAGAAGCAACTTAGTT+GGG - chr1_3:10319127-10319146 None:intergenic 40.0%
TCGCAAAGAAGCAACTTAGT+TGG - chr1_3:10319128-10319147 None:intergenic 40.0%
CAAGAGGATTTAGGTACAGA+AGG - chr1_3:10319197-10319216 None:intergenic 40.0%
CTTCTGTACCTAAATCCTCT+TGG + chr1_3:10319195-10319214 Msa0103200:CDS 40.0%
! GCATACATTTGGGGATTTTG+GGG - chr1_3:10319244-10319263 None:intergenic 40.0%
TGGTATCACAGTGAGTTTGT+CGG + chr1_3:10319306-10319325 Msa0103200:intron 40.0%
ACCAAACATTCACAACACCT+AGG + chr1_3:10319352-10319371 Msa0103200:intron 40.0%
CCAAACATTCACAACACCTA+GGG + chr1_3:10319353-10319372 Msa0103200:intron 40.0%
! ATTAGAGTATTCACGACCCT+AGG - chr1_3:10319372-10319391 None:intergenic 40.0%
!! GGATTGGTTTGGGTATTGTT+TGG + chr1_3:10319665-10319684 Msa0103200:intron 40.0%
TTTCACATGCTCTCCACAAT+AGG - chr1_3:10319975-10319994 None:intergenic 40.0%
GAGAAAGCGAAGTAGTAGTT+TGG + chr1_3:10320229-10320248 Msa0103200:CDS 40.0%
AAAGCGAAGTAGTAGTTTGG+TGG + chr1_3:10320232-10320251 Msa0103200:CDS 40.0%
GAAGAGGAGATTAGAACAGA+TGG + chr1_3:10320304-10320323 Msa0103200:CDS 40.0%
ACGTTCAAGAACAGGAGAAT+TGG - chr1_3:10320414-10320433 None:intergenic 40.0%
AATTCTCCTGTTCTTGAACG+TGG + chr1_3:10320413-10320432 Msa0103200:CDS 40.0%
! ATGTTGCCTCTTTGTTGTCA+TGG + chr1_3:10320671-10320690 Msa0103200:intron 40.0%
TCTTAGCCATGACAACAAAG+AGG - chr1_3:10320680-10320699 None:intergenic 40.0%
GGTCTGTCTACAAACTAGTT+TGG + chr1_3:10321079-10321098 Msa0103200:intron 40.0%
TCTGCACAAGTTAAGAGTCT+CGG - chr1_3:10321275-10321294 None:intergenic 40.0%
! TGCAGAAGTATGATGGAAAG+AGG + chr1_3:10321289-10321308 Msa0103200:CDS 40.0%
GGATCATAAACAACCATGAG+GGG - chr1_3:10321325-10321344 None:intergenic 40.0%
CAGGATCATAAACAACCATG+AGG - chr1_3:10321327-10321346 None:intergenic 40.0%
GAATAGCACTAATATCCACC+TGG + chr1_3:10321949-10321968 Msa0103200:intron 40.0%
TAGCATTACATGAAAAGGCC+AGG - chr1_3:10321970-10321989 None:intergenic 40.0%
GAGATATAGCAAAGGGAGAA+AGG + chr1_3:10322201-10322220 Msa0103200:CDS 40.0%
GTGAAGCCATGGTGAGATTT+GGG - chr1_3:10319007-10319026 None:intergenic 45.0%
TGGGAGCTGGAATTCTTCTT+CGG - chr1_3:10319037-10319056 None:intergenic 45.0%
!!! GTGGATTGTTTTTTGGGAGC+TGG - chr1_3:10319050-10319069 None:intergenic 45.0%
GTCATCATCGTTGAAGGTTG+TGG - chr1_3:10319069-10319088 None:intergenic 45.0%
GTTTGCCAGAAATGCAACTC+CGG + chr1_3:10319095-10319114 Msa0103200:CDS 45.0%
ATTTGCCGGAGTTGCATTTC+TGG - chr1_3:10319103-10319122 None:intergenic 45.0%
CAACTTAGTTGGGGATTTGC+CGG - chr1_3:10319117-10319136 None:intergenic 45.0%
CTTTGCGACAATTGCGACAA+CGG + chr1_3:10319140-10319159 Msa0103200:CDS 45.0%
TTAGGTACAGAAGGGAGGAT+AGG - chr1_3:10319188-10319207 None:intergenic 45.0%
AGGATTTAGGTACAGAAGGG+AGG - chr1_3:10319193-10319212 None:intergenic 45.0%
GGGCAAAACCAAGAGGATTT+AGG - chr1_3:10319206-10319225 None:intergenic 45.0%
! CCCTAGGTGTTGTGAATGTT+TGG - chr1_3:10319356-10319375 None:intergenic 45.0%
ATTAGAACAGATGGCGTCGT+TGG + chr1_3:10320313-10320332 Msa0103200:CDS 45.0%
!! CGTTTTAGTAGCAGTCAACG+CGG - chr1_3:10320342-10320361 None:intergenic 45.0%
!! CGCGTTGACTGCTACTAAAA+CGG + chr1_3:10320340-10320359 Msa0103200:CDS 45.0%
AATGAGCTTACGTACATGCC+TGG + chr1_3:10320371-10320390 Msa0103200:CDS 45.0%
ATTCCTCCACGTTCAAGAAC+AGG - chr1_3:10320422-10320441 None:intergenic 45.0%
TTGCATCTCAGTGTGCATGT+TGG + chr1_3:10320518-10320537 Msa0103200:intron 45.0%
! CAGTGTGCATGTTGGTTGTT+TGG + chr1_3:10320526-10320545 Msa0103200:intron 45.0%
TCTAGGTAACACTGCGTACT+AGG - chr1_3:10321020-10321039 None:intergenic 45.0%
TCATAAACAACCATGAGGGG+TGG - chr1_3:10321322-10321341 None:intergenic 45.0%
CAGATGACCAATGACTGTGA+AGG - chr1_3:10321575-10321594 None:intergenic 45.0%
CATTACATGAAAAGGCCAGG+TGG - chr1_3:10321967-10321986 None:intergenic 45.0%
!! ATATTATATTATTGTATTTA+GGG - chr1_3:10321708-10321727 None:intergenic 5.0%
!! TATATTATATTATTGTATTT+AGG - chr1_3:10321709-10321728 None:intergenic 5.0%
GGTGAAGCCATGGTGAGATT+TGG - chr1_3:10319008-10319027 None:intergenic 50.0%
GGAATTCTTCTTCGGCGAAG+TGG - chr1_3:10319029-10319048 None:intergenic 50.0%
GACGTCGTCATCATCGTTGA+AGG - chr1_3:10319075-10319094 None:intergenic 50.0%
TAGGTGTGAGGCAGAAGAGA+TGG - chr1_3:10319169-10319188 None:intergenic 50.0%
!!! GATTTTGGGGTTGTGAGAGC+AGG - chr1_3:10319231-10319250 None:intergenic 50.0%
GCTTACGTACATGCCTGGAA+TGG + chr1_3:10320376-10320395 Msa0103200:CDS 50.0%
ACAGGAGAATTGGCATCCCT+TGG - chr1_3:10320404-10320423 None:intergenic 50.0%
TCTCCTGTTCTTGAACGTGG+AGG + chr1_3:10320416-10320435 Msa0103200:CDS 50.0%
TCTTGAACGTGGAGGAATGC+AGG + chr1_3:10320424-10320443 Msa0103200:CDS 50.0%
CAGAAGGGAGGATAGGTGTG+AGG - chr1_3:10319181-10319200 None:intergenic 55.0%
GCAGGAAGGGCAAAACCAAG+AGG - chr1_3:10319213-10319232 None:intergenic 55.0%
TGGGGTTGTGAGAGCAGGAA+GGG - chr1_3:10319226-10319245 None:intergenic 55.0%
TTGGGGTTGTGAGAGCAGGA+AGG - chr1_3:10319227-10319246 None:intergenic 55.0%
AGGAGAATGTCCACCCCTCA+TGG + chr1_3:10321309-10321328 Msa0103200:CDS 55.0%
TCGGCGAAGTGGTGAAGCCA+TGG - chr1_3:10319018-10319037 None:intergenic 60.0%
ACATGCCTGGAATGGCGCCA+AGG + chr1_3:10320384-10320403 Msa0103200:CDS 60.0%
CATGCCTGGAATGGCGCCAA+GGG + chr1_3:10320385-10320404 Msa0103200:CDS 60.0%
GCATCCCTTGGCGCCATTCC+AGG - chr1_3:10320392-10320411 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 10318916 10322299 10318916 ID=Msa0103200;Name=Msa0103200
chr1_3 mRNA 10318916 10322299 10318916 ID=Msa0103200-mRNA-1;Parent=Msa0103200;Name=Msa0103200-mRNA-1;_AED=0.39;_eAED=0.39;_QI=101|1|1|1|1|1|6|19|341
chr1_3 exon 10318916 10319257 10318916 ID=Msa0103200-mRNA-1:exon:4300;Parent=Msa0103200-mRNA-1
chr1_3 exon 10319519 10319599 10319519 ID=Msa0103200-mRNA-1:exon:4301;Parent=Msa0103200-mRNA-1
chr1_3 exon 10320216 10320445 10320216 ID=Msa0103200-mRNA-1:exon:4302;Parent=Msa0103200-mRNA-1
chr1_3 exon 10321253 10321353 10321253 ID=Msa0103200-mRNA-1:exon:4303;Parent=Msa0103200-mRNA-1
chr1_3 exon 10321439 10321651 10321439 ID=Msa0103200-mRNA-1:exon:4304;Parent=Msa0103200-mRNA-1
chr1_3 exon 10322121 10322299 10322121 ID=Msa0103200-mRNA-1:exon:4305;Parent=Msa0103200-mRNA-1
chr1_3 five_prime_UTR 10318916 10319016 10318916 ID=Msa0103200-mRNA-1:five_prime_utr;Parent=Msa0103200-mRNA-1
chr1_3 CDS 10319017 10319257 10319017 ID=Msa0103200-mRNA-1:cds;Parent=Msa0103200-mRNA-1
chr1_3 CDS 10319519 10319599 10319519 ID=Msa0103200-mRNA-1:cds;Parent=Msa0103200-mRNA-1
chr1_3 CDS 10320216 10320445 10320216 ID=Msa0103200-mRNA-1:cds;Parent=Msa0103200-mRNA-1
chr1_3 CDS 10321253 10321353 10321253 ID=Msa0103200-mRNA-1:cds;Parent=Msa0103200-mRNA-1
chr1_3 CDS 10321439 10321651 10321439 ID=Msa0103200-mRNA-1:cds;Parent=Msa0103200-mRNA-1
chr1_3 CDS 10322121 10322280 10322121 ID=Msa0103200-mRNA-1:cds;Parent=Msa0103200-mRNA-1
chr1_3 three_prime_UTR 10322281 10322299 10322281 ID=Msa0103200-mRNA-1:three_prime_utr;Parent=Msa0103200-mRNA-1
Gene Sequence

>Msa0103200

ATGGCTTCACCACTTCGCCGAAGAAGAATTCCAGCTCCCAAAAAACAATCCACAACCTTCAACGATGATGACGACGTCGTTTGCCAGAAATGCAACTCCGGCAAATCCCCAACTAAGTTGCTTCTTTGCGACAATTGCGACAACGGCTACCATCTCTTCTGCCTCACACCTATCCTCCCTTCTGTACCTAAATCCTCTTGGTTTTGCCCTTCCTGCTCTCACAACCCCAAAATCCCCAAATCTTTTCCTCTTGTACAAACCAAAATTATTGATTTCTTCAAGATTCAAAGATCCGTTGATGCATCTAAGATTCTGAATCATGATTCAAAGAAGAAGAGAAAGCGAAGTAGTAGTTTGGTGGTTTCAAAAAAGAAAAGGAAGTTGTTGGTATTTGTGCCAAATGATGATTTGAAGAGGAGATTAGAACAGATGGCGTCGTTGGCAACCGCGTTGACTGCTACTAAAACGGAGTTCAGTAATGAGCTTACGTACATGCCTGGAATGGCGCCAAGGGATGCCAATTCTCCTGTTCTTGAACGTGGAGGAATGCAGGTCTTATCAAAAGAAGACACCGAGACTCTTAACTTGTGCAGAAGTATGATGGAAAGAGGAGAATGTCCACCCCTCATGGTTGTTTATGATCCTGTAGAAGGGTTCACTGTTGAAGCAGACAAGTCCATAAAAGATTTGACAATAATAACAGAATATGTTGGAGATGTAGACTTTTTGAAGAATCGGGAATATGATGATGGAGATAGCATTATGACACTTCTTTCTGCTTCTAATCCTTCACAGTCATTGGTCATCTGCCCAGATAAACGTAGCAATATAGCACGTTTCATTAATGGAATCAACAATCACACACCTGAAGGAAAAAAGAAGCAGAACCTGAAATGCGTGAGATATAATGTTGATGGTGAATGTCGAGTTCTTTTAATTGCAAATAGAGATATAGCAAAGGGAGAAAGGTTGTATTATGACTACAATGGATTAGAACATGAATATCCAACTGAACATTTTGTCTAA

Protein sequence

>Msa0103200

MASPLRRRRIPAPKKQSTTFNDDDDVVCQKCNSGKSPTKLLLCDNCDNGYHLFCLTPILPSVPKSSWFCPSCSHNPKIPKSFPLVQTKIIDFFKIQRSVDASKILNHDSKKKRKRSSSLVVSKKKRKLLVFVPNDDLKRRLEQMASLATALTATKTEFSNELTYMPGMAPRDANSPVLERGGMQVLSKEDTETLNLCRSMMERGECPPLMVVYDPVEGFTVEADKSIKDLTIITEYVGDVDFLKNREYDDGDSIMTLLSASNPSQSLVICPDKRSNIARFINGINNHTPEGKKKQNLKCVRYNVDGECRVLLIANRDIAKGERLYYDYNGLEHEYPTEHFV*