AlfalfaGEDB | Msa0160290

M. sativa cultivar zhongmu-4 / Msa0160290

KEGG: -
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006275 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009791 GO:0009889 GO:0009900 GO:0009901 GO:0009908 GO:0009987 GO:0010556 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0031323 GO:0031326 GO:0032259 GO:0032501 GO:0032502 GO:0032504 GO:0034968 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046976 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051276 GO:0051726 GO:0060255 GO:0061458 GO:0065007 GO:0070734 GO:0071704 GO:0071840 GO:0080090 GO:0090567 GO:0099402 GO:0140096 GO:1901564 GO:2000112
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0160290	XP_003588480.1	85.246	61	9	0	127	187	186	246	1.17e-25	111
Msa0160290	XP_003588480.1	96.825	126	4	0	1	126	145	270	8.31e-81	253

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0160290	sp\|Q9FNE9\|ATXR6_ARATH	72.441	127	34	1	1	126	151	277	8.55e-58	187
Msa0160290	sp\|Q9FNE9\|ATXR6_ARATH	66.667	63	21	0	125	187	190	252	8.46e-21	90.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0160290	G7I3E6	85.246	61	9	0	127	187	186	246	5.61e-26	111
Msa0160290	G7I3E6	96.825	126	4	0	1	126	145	270	3.97e-81	253

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0016530	Msa0160290	0.825476	4.590981e-54	-8.615850e-47
Msa0027800	Msa0160290	0.801458	8.919268e-49	-8.615850e-47
Msa0030070	Msa0160290	0.823900	1.079985e-53	-8.615850e-47
Msa0032970	Msa0160290	0.806039	9.983499e-50	-8.615850e-47
Msa0032980	Msa0160290	0.833856	4.192305e-56	-8.615850e-47
Msa0057640	Msa0160290	0.896395	3.843980e-76	-8.615850e-47
Msa0067380	Msa0160290	0.806780	6.966932e-50	-8.615850e-47
Msa0090440	Msa0160290	0.816609	5.062898e-52	-8.615850e-47
Msa0091350	Msa0160290	0.862268	5.716361e-64	-8.615850e-47
Msa0093860	Msa0160290	0.831181	1.930775e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0160290	MtrunA17_Chr1g0146731	96.825	126	4	0	1	126	145	270	7.64e-85	253
Msa0160290	MtrunA17_Chr1g0146731	85.246	61	9	0	127	187	186	246	1.08e-29	111
Msa0160290	MtrunA17_Chr1g0146761	73.643	129	31	2	1	126	160	288	6.82e-59	188
Msa0160290	MtrunA17_Chr1g0146761	66.667	63	21	0	125	187	201	263	2.63e-22	92.0
Msa0160290	MtrunA17_Chr1g0146741	69.853	136	16	2	1	121	55	180	2.24e-55	173
Msa0160290	MtrunA17_Chr1g0146741	61.194	67	16	1	121	187	105	161	4.61e-19	80.5
Msa0160290	MtrunA17_Chr3g0129881	63.492	126	46	0	1	126	193	318	6.92e-50	165
Msa0160290	MtrunA17_Chr3g0129881	50.000	60	30	0	128	187	235	294	6.95e-14	68.9
Msa0160290	MtrunA17_Chr1g0146751	83.721	86	14	0	41	126	69	154	3.69e-46	150
Msa0160290	MtrunA17_Chr1g0146751	73.770	61	16	0	127	187	70	130	2.65e-24	94.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0160290	AT5G24330.1	72.441	127	34	1	1	126	151	277	8.69e-59	187
Msa0160290	AT5G24330.1	66.667	63	21	0	125	187	190	252	8.60e-22	90.9
Msa0160290	AT5G09790.2	64.567	127	45	0	1	127	182	308	2.98e-53	174
Msa0160290	AT5G09790.2	50.562	89	39	1	104	187	195	283	9.06e-21	88.6
Msa0160290	AT5G09790.1	64.567	127	45	0	1	127	181	307	3.07e-53	174
Msa0160290	AT5G09790.1	50.562	89	39	1	104	187	194	282	9.26e-21	88.6

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Find 80 sgRNAs with CRISPR-Local

Find 280 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATGTGCAGAAGTATGA+TGG	0.488621	1_4:+32345940	Msa0160290:CDS
AAAGCGGAGTAGTAGTTTGG+TGG	0.462327	1_4:+32342007	Msa0160290:five_prime_UTR
AAATGAGAAGAGGAATAATA+GGG	0.435697	1_4:-32340800	None:intergenic
AAGAAATGAGAAATGAGAAG+AGG	0.549396	1_4:-32340810	None:intergenic
AAGAATCGGGAATATGATGA+TGG	0.544853	1_4:+32343289	Msa0160290:CDS
AAGAGGATTTAGGTACAGAA+GGG	0.621884	1_4:-32341045	None:intergenic
AATGAGCTTACGTACATGCC+TGG	0.527386	1_4:+32342145	Msa0160290:CDS
AATTCTCCTGTTCTTGAACG+TGG	0.561001	1_4:+32342187	Msa0160290:CDS
ACAATAATAACAGAATATGT+TGG	0.490743	1_4:+32343250	Msa0160290:CDS
ACAGGAGAATTGGCATCCCT+TGG	0.541184	1_4:-32342175	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAAGTAGTAAGAATTGGAAG+AGG	-	chr1_4:32340772-32340791	None:intergenic	30.0%
GAAATGAGAAGAGGAATAAT+AGG	-	chr1_4:32340804-32340823	None:intergenic	30.0%
AAGAAATGAGAAATGAGAAG+AGG	-	chr1_4:32340813-32340832	None:intergenic	30.0%
ATGAAAGGATGCATACATTT+GGG	-	chr1_4:32341106-32341125	None:intergenic	30.0%
AATGAAAGGATGCATACATT+TGG	-	chr1_4:32341107-32341126	None:intergenic	30.0%
GTTTAGAGAATTTGATTGGA+TGG	+	chr1_4:32341496-32341515	Msa0160290:intron	30.0%
ATTCAAAGAAGAAGAGAAAG+CGG	+	chr1_4:32341991-32342010	Msa0160290:five_prime_UTR	30.0%
TGTTGAGTTATGTTTGTATG+AGG	+	chr1_4:32342323-32342342	Msa0160290:intron	30.0%
TGAGACATTGAATTGATTGT+TGG	+	chr1_4:32342477-32342496	Msa0160290:intron	30.0%
TAGTCTTCATTTGTACAACT+AGG	-	chr1_4:32342621-32342640	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	32340768	32346177	32340768	ID=Msa0160290;Name=Msa0160290
chr1_4	mRNA	32340768	32346177	32340768	ID=Msa0160290-mRNA-1;Parent=Msa0160290;Name=Msa0160290-mRNA-1;_AED=0.39;_eAED=0.40;_QI=529\|0.57\|0.5\|0.87\|0.71\|0.62\|8\|0\|188
chr1_4	exon	32340768	32341109	32340768	ID=Msa0160290-mRNA-1:exon:10224;Parent=Msa0160290-mRNA-1
chr1_4	exon	32341371	32341451	32341371	ID=Msa0160290-mRNA-1:exon:10225;Parent=Msa0160290-mRNA-1
chr1_4	exon	32341991	32342219	32341991	ID=Msa0160290-mRNA-1:exon:10226;Parent=Msa0160290-mRNA-1
chr1_4	exon	32343027	32343127	32343027	ID=Msa0160290-mRNA-1:exon:10227;Parent=Msa0160290-mRNA-1
chr1_4	exon	32343213	32343360	32343213	ID=Msa0160290-mRNA-1:exon:10228;Parent=Msa0160290-mRNA-1
chr1_4	exon	32345575	32345580	32345575	ID=Msa0160290-mRNA-1:exon:10229;Parent=Msa0160290-mRNA-1
chr1_4	exon	32345911	32346011	32345911	ID=Msa0160290-mRNA-1:exon:10230;Parent=Msa0160290-mRNA-1
chr1_4	exon	32346090	32346177	32346090	ID=Msa0160290-mRNA-1:exon:10231;Parent=Msa0160290-mRNA-1
chr1_4	five_prime_UTR	32340768	32341109	32340768	ID=Msa0160290-mRNA-1:five_prime_utr;Parent=Msa0160290-mRNA-1
chr1_4	five_prime_UTR	32341371	32341451	32341371	ID=Msa0160290-mRNA-1:five_prime_utr;Parent=Msa0160290-mRNA-1
chr1_4	five_prime_UTR	32341991	32342096	32341991	ID=Msa0160290-mRNA-1:five_prime_utr;Parent=Msa0160290-mRNA-1
chr1_4	CDS	32342097	32342219	32342097	ID=Msa0160290-mRNA-1:cds;Parent=Msa0160290-mRNA-1
chr1_4	CDS	32343027	32343127	32343027	ID=Msa0160290-mRNA-1:cds;Parent=Msa0160290-mRNA-1
chr1_4	CDS	32343213	32343360	32343213	ID=Msa0160290-mRNA-1:cds;Parent=Msa0160290-mRNA-1
chr1_4	CDS	32345575	32345580	32345575	ID=Msa0160290-mRNA-1:cds;Parent=Msa0160290-mRNA-1
chr1_4	CDS	32345911	32346011	32345911	ID=Msa0160290-mRNA-1:cds;Parent=Msa0160290-mRNA-1
chr1_4	CDS	32346090	32346177	32346090	ID=Msa0160290-mRNA-1:cds;Parent=Msa0160290-mRNA-1

Gene Sequence

>Msa0160290

ATGGCGTCGTTGGCAACCGCGTTGACTGCTACTAAAACGGAGTTCAGTAATGAGCTTACGTACATGCCTGGAATGGCGCCAAGGGATGCCAATTCTCCTGTTCTTGAACGTGGAGGAATGCAGGTCTTATCAAAAGAAGACACCGAGACTCTTAACTTGTGCAGAAGTATGATGGAAAGAGGAGAATGTCCGCCCCTCATGGTTGTTTATGATCCTGTAGAAGGGTTCACTGTTGAAGCAGACAAGTCCATAAAAGATTTGACAATAATAACAGAATATGTTGGAGATGTAGACTTTTTGAAGAATCGGGAATATGATGATGGAGATAGCATTATGACACTTCTTTCTGCTTCTAATCCTTCACAGTCACTGCTGTTGGTCTTATCGAATGAAGACACCGAGACTCTAAACATGTGCAGAAGTATGATGGAAAGAGGAGAATGTCCGCCCCTCATGGTTGTTTTTGATCCTGTAGAAGGGTTCACTGTAGAAGCAAATAAATCCATAAAAGAGTCGACCATAACAACAGAATATGTTGTAGATGTAGACTTTTTAAAGAATCCGTAA

Protein sequence

>Msa0160290

MASLATALTATKTEFSNELTYMPGMAPRDANSPVLERGGMQVLSKEDTETLNLCRSMMERGECPPLMVVYDPVEGFTVEADKSIKDLTIITEYVGDVDFLKNREYDDGDSIMTLLSASNPSQSLLLVLSNEDTETLNMCRSMMERGECPPLMVVFDPVEGFTVEANKSIKESTITTEYVVDVDFLKNP*