AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0376760


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0376760 MtrunA17_Chr3g0127151 97.934 242 3 1 1 242 1 240 5.36e-174 478
Msa0376760 MtrunA17_Chr5g0398981 31.250 128 81 2 119 241 97 222 4.84e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0376760 AT5G53490.3 62.151 251 85 3 1 242 1 250 1.28e-102 298
Msa0376760 AT5G53490.1 64.082 245 76 4 1 242 1 236 1.68e-102 297
Msa0376760 AT5G53490.2 64.082 245 75 4 1 242 1 235 1.69e-102 297
Msa0376760 AT5G53490.4 64.082 245 76 4 1 242 24 259 1.78e-102 298
Msa0376760 AT1G12250.2 30.723 166 106 4 81 241 5 166 2.33e-14 70.1
Msa0376760 AT1G12250.1 31.210 157 100 3 90 241 87 240 4.63e-14 70.5
Msa0376760 AT1G12250.3 33.333 105 65 1 142 241 1 105 3.09e-12 62.8

Find 71 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAACATTTCAATTTACTTT+TGG 0.220928 3_1:-77005393 None:intergenic
CATTTGTGAAGTCACATTTC+CGG 0.250911 3_1:-77004236 None:intergenic
CAGACAGAGTCTTCCCCTTC+AGG 0.276167 3_1:-77004269 None:intergenic
TTGTATTTCTGCATATCTTT+TGG 0.289675 3_1:-77005208 None:intergenic
TGTTGGATCGTGTTAATTTC+GGG 0.294360 3_1:+77005069 Msa0376760:CDS
GTGTTGGATCGTGTTAATTT+CGG 0.299450 3_1:+77005068 Msa0376760:CDS
CACCTTTGACGATGCTAAAC+TGG 0.319451 3_1:+77005142 Msa0376760:CDS
TTTCGGGAAAGCAGATCTTC+AGG 0.327829 3_1:+77005085 Msa0376760:CDS
ATCTTCAGGGAGCTGTATTT+AGG 0.328541 3_1:+77005099 Msa0376760:CDS
CAAATTGAAGACATTAATAA+TGG 0.333640 3_1:+77005465 Msa0376760:three_prime_UTR
GAAGGCGAAGCTGAGTTAGA+TGG 0.362215 3_1:+77002216 Msa0376760:CDS
CGCTGCGAACGTGCATTTGT+TGG 0.372475 3_1:+77004165 Msa0376760:CDS
GCATTTGTTGGCAACACAAT+TGG 0.392635 3_1:+77004177 Msa0376760:CDS
CCCTTCACAATCACTTGCTC+TGG 0.411094 3_1:+77002089 Msa0376760:CDS
TCCCGTTACTGCTGCTACTC+AGG 0.417361 3_1:+77002332 Msa0376760:CDS
TGTCAAAGGCTTATGCAGTT+GGG 0.417381 3_1:+77004346 Msa0376760:CDS
AAATGCACGTTCGCAGCGAT+TGG 0.439609 3_1:-77004160 None:intergenic
TGTTGGCAACACAATTGGTC+AGG 0.445456 3_1:+77004182 Msa0376760:CDS
CATGTCAGCACCGTCAAACT+TGG 0.449162 3_1:-77004310 None:intergenic
ACCTGAGTAGCAGCAGTAAC+GGG 0.463670 3_1:-77002333 None:intergenic
AACACAATTGGTCAGGCAAA+TGG 0.475300 3_1:+77004189 Msa0376760:CDS
AGCTCGACCCTCGTCGCCGA+TGG 0.476213 3_1:-77005231 None:intergenic
GATTGGGCTCAGTTGACAAT+GGG 0.478708 3_1:-77004143 None:intergenic
CGGGAGTTGAATTGAAAGGT+TGG 0.482334 3_1:-77002003 None:intergenic
ACTTAGTCTCAACAAAATCA+AGG 0.488052 3_1:+77002260 Msa0376760:CDS
TTCGGGAAAGCAGATCTTCA+GGG 0.490270 3_1:+77005086 Msa0376760:CDS
TTTGGTTGAGTAGTTGCGTA+TGG 0.490995 3_1:-77002039 None:intergenic
ATGTCAGATGCCAAGTTTGA+CGG 0.493715 3_1:+77004300 Msa0376760:CDS
AATGCACGTTCGCAGCGATT+GGG 0.510575 3_1:-77004159 None:intergenic
CAGAGTCTTCCCCTTCAGGT+TGG 0.517528 3_1:-77004265 None:intergenic
ATGTCAAAGGCTTATGCAGT+TGG 0.517874 3_1:+77004345 Msa0376760:CDS
GTAGTTGCGTATGGACAAAC+TGG 0.517957 3_1:-77002030 None:intergenic
AGTGGTGAAACATGGTCGTT+TGG 0.528721 3_1:-77002057 None:intergenic
GTCAAAGGCTTATGCAGTTG+GGG 0.538436 3_1:+77004347 Msa0376760:CDS
AACCTGAGTAGCAGCAGTAA+CGG 0.539008 3_1:-77002334 None:intergenic
TTGAAGTGCAGAAAGAAGAA+TGG 0.545702 3_1:+77001980 Msa0376760:exon
TCCGCAGATAAGCAAGGGTG+TGG 0.547307 3_1:+77001925 None:intergenic
TTCGCGGGAGTTGAATTGAA+AGG 0.550681 3_1:-77002007 None:intergenic
ACGACAAAGCATTAGATCTC+CGG 0.559241 3_1:+77004217 Msa0376760:CDS
CAGTTTAGCATCGTCAAAGG+TGG 0.560849 3_1:-77005141 None:intergenic
TCTCTTGTAGTTGTAGGAGA+AGG 0.562555 3_1:+77002198 Msa0376760:intron
GACAGAAGTTGTAATGTCAA+AGG 0.563514 3_1:+77004332 Msa0376760:CDS
CGATTGGGCTCAGTTGACAA+TGG 0.568426 3_1:-77004144 None:intergenic
GGACTTCTCAAATGCAGTGT+TGG 0.574276 3_1:+77005052 Msa0376760:CDS
TTCCAGTTTAGCATCGTCAA+AGG 0.578875 3_1:-77005144 None:intergenic
TTGTTGAGACTAAGTAACCT+TGG 0.583587 3_1:-77002252 None:intergenic
ATAAGCTGCAAGAATACCAC+AGG 0.587978 3_1:-77002289 None:intergenic
TGTGAAGGGTGAAGCAGAAG+TGG 0.591249 3_1:-77002075 None:intergenic
CGTATGGACAAACTGGTTCG+CGG 0.591395 3_1:-77002023 None:intergenic
TATTTATCCGCAGATAAGCA+AGG 0.594777 3_1:+77001919 None:intergenic
GACGAGGGTCGAGCTGAGCT+AGG 0.596639 3_1:+77005239 Msa0376760:CDS
CTTAGTCTCAACAAAATCAA+GGG 0.599258 3_1:+77002261 Msa0376760:CDS
ATATGCAGAAATACAACCAT+CGG 0.602365 3_1:+77005215 Msa0376760:CDS
GTATGGACAAACTGGTTCGC+GGG 0.604115 3_1:-77002022 None:intergenic
TCTACTAGTTCTCCTCATCA+AGG 0.605342 3_1:-77005353 None:intergenic
CCAGAGCAAGTGATTGTGAA+GGG 0.619678 3_1:-77002089 None:intergenic
GAAGCAGAAGTGGTGAAACA+TGG 0.620884 3_1:-77002065 None:intergenic
AATACAACCATCGGCGACGA+GGG 0.628415 3_1:+77005224 Msa0376760:CDS
AAATACAACCATCGGCGACG+AGG 0.630860 3_1:+77005223 Msa0376760:CDS
ATTTATCCGCAGATAAGCAA+GGG 0.633440 3_1:+77001920 None:intergenic
TATATAAGAGTGCCTTGATG+AGG 0.637175 3_1:+77005341 Msa0376760:three_prime_UTR
TCCACACCCTTGCTTATCTG+CGG 0.639608 3_1:-77001926 None:intergenic
GAAATAATAAAACACTACAA+AGG 0.645557 3_1:-77005421 None:intergenic
AAAATCAAGGGTGTTGCCTG+TGG 0.646472 3_1:+77002273 Msa0376760:CDS
TTTGACGATGCTAAACTGGA+AGG 0.655477 3_1:+77005146 Msa0376760:CDS
ATTGGGCTCAGTTGACAATG+GGG 0.660543 3_1:-77004142 None:intergenic
TCAAAGGCTTATGCAGTTGG+GGG 0.667718 3_1:+77004348 Msa0376760:CDS
AGATAAGCAAGGGTGTGGAG+TGG 0.671399 3_1:+77001930 Msa0376760:five_prime_UTR
ACCAGAGCAAGTGATTGTGA+AGG 0.676454 3_1:-77002090 None:intergenic
TTGGGCTCAGTTGACAATGG+GGG 0.687518 3_1:-77004141 None:intergenic
ATGGAACTGAGAATAAACCA+AGG 0.746677 3_1:+77002235 Msa0376760:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAATTAAAACATGTAATAT+AGG + chr3_1:77002923-77002942 Msa0376760:intron 15.0%
!! TGAAAAAACACAAAAAAATT+GGG - chr3_1:77003872-77003891 None:intergenic 15.0%
!! ATGAAAAAACACAAAAAAAT+TGG - chr3_1:77003873-77003892 None:intergenic 15.0%
!!! AAAACATTTCAATTTACTTT+TGG - chr3_1:77005396-77005415 None:intergenic 15.0%
!! ACAAACAAATTTAAATGTCT+TGG - chr3_1:77002178-77002197 None:intergenic 20.0%
!! AATGTATCTATAAATCCAAA+TGG + chr3_1:77003001-77003020 Msa0376760:intron 20.0%
!! TATGTATCTATAAATCCAAA+TGG + chr3_1:77003070-77003089 Msa0376760:intron 20.0%
!!! CTCCTTTTTTTTTTTTGAAA+CGG + chr3_1:77003288-77003307 Msa0376760:intron 20.0%
!!! TTAGATTGGATTATTAGTTT+TGG - chr3_1:77003569-77003588 None:intergenic 20.0%
!! AATGTATAGAAACATGTATT+TGG - chr3_1:77004454-77004473 None:intergenic 20.0%
!!! ATGAAGAATAACTTTTATGT+TGG + chr3_1:77004516-77004535 Msa0376760:intron 20.0%
!! AAACATTTACTAAACTTGAA+TGG + chr3_1:77004539-77004558 Msa0376760:intron 20.0%
!!! GCTTATTTTATCATAGAAAT+TGG + chr3_1:77004846-77004865 Msa0376760:intron 20.0%
!! TGATTCATACTAATACTATT+TGG + chr3_1:77004979-77004998 Msa0376760:intron 20.0%
!! GAAATAATAAAACACTACAA+AGG - chr3_1:77005424-77005443 None:intergenic 20.0%
!! CAAATTGAAGACATTAATAA+TGG + chr3_1:77005465-77005484 Msa0376760:three_prime_UTR 20.0%
!! AAGTGAGTGTTAATATTTTC+AGG - chr3_1:77002368-77002387 None:intergenic 25.0%
! AACAATCGTACAAGATTATT+AGG + chr3_1:77002461-77002480 Msa0376760:intron 25.0%
!! ATGATAGTACTGAACTTATT+AGG + chr3_1:77002699-77002718 Msa0376760:intron 25.0%
! TCAAAAAAAAAAAAGGAGCA+GGG - chr3_1:77003286-77003305 None:intergenic 25.0%
! TTCAAAAAAAAAAAAGGAGC+AGG - chr3_1:77003287-77003306 None:intergenic 25.0%
!! TGCCGTTTCAAAAAAAAAAA+AGG - chr3_1:77003293-77003312 None:intergenic 25.0%
!!! TTGGATTATTAGTTTTGGTT+TGG - chr3_1:77003564-77003583 None:intergenic 25.0%
! GGTTAGTAAGTTAATTAGAT+TGG - chr3_1:77003583-77003602 None:intergenic 25.0%
! ACTTCATCATTTCATTCAAA+TGG + chr3_1:77003717-77003736 Msa0376760:intron 25.0%
! AAAACACAAAAAAATTGGGT+TGG - chr3_1:77003868-77003887 None:intergenic 25.0%
!!! TTGTGTTTTTTCATTGTGAT+TGG + chr3_1:77003879-77003898 Msa0376760:intron 25.0%
! ATATTCAATACCAACCTAAA+TGG - chr3_1:77003975-77003994 None:intergenic 25.0%
!! TGATTTTGTACTAGTAAACA+AGG - chr3_1:77004389-77004408 None:intergenic 25.0%
! AATCAGAGGTAATTATTATC+AGG - chr3_1:77004591-77004610 None:intergenic 25.0%
! TGAAAGATGAATAAAATCAG+AGG - chr3_1:77004605-77004624 None:intergenic 25.0%
! TCCACTAACTACTATTAATA+AGG + chr3_1:77004806-77004825 Msa0376760:intron 25.0%
! CCACTAACTACTATTAATAA+GGG + chr3_1:77004807-77004826 Msa0376760:intron 25.0%
!!! TTGTATTTCTGCATATCTTT+TGG - chr3_1:77005211-77005230 None:intergenic 25.0%
! TCTTTCTGCACTTCAATTTT+TGG - chr3_1:77001976-77001995 None:intergenic 30.0%
ACTTAGTCTCAACAAAATCA+AGG + chr3_1:77002260-77002279 Msa0376760:CDS 30.0%
CTTAGTCTCAACAAAATCAA+GGG + chr3_1:77002261-77002280 Msa0376760:CDS 30.0%
ACTCAATGCAATCATTAGTT+AGG + chr3_1:77002391-77002410 Msa0376760:intron 30.0%
! TGATCAGGAGAATTTTTCTT+TGG + chr3_1:77002863-77002882 Msa0376760:intron 30.0%
ACATGTAATATAGGACCAAA+TGG + chr3_1:77002932-77002951 Msa0376760:intron 30.0%
ACAAACTTGTCAAAACCATT+TGG - chr3_1:77003019-77003038 None:intergenic 30.0%
CAAAACTTGTCAAAACCATT+TGG - chr3_1:77003088-77003107 None:intergenic 30.0%
!!! CAAATGGTTTTGACAAGTTT+TGG + chr3_1:77003017-77003036 Msa0376760:intron 30.0%
AAACCAAATTGAGACAACAA+GGG - chr3_1:77003241-77003260 None:intergenic 30.0%
TAAACCAAATTGAGACAACA+AGG - chr3_1:77003242-77003261 None:intergenic 30.0%
AAATATTATTCATCGACGAG+AGG + chr3_1:77003312-77003331 Msa0376760:intron 30.0%
AATATTATTCATCGACGAGA+GGG + chr3_1:77003313-77003332 Msa0376760:intron 30.0%
! TTTTCACCCAAACTTGTAAT+AGG - chr3_1:77003674-77003693 None:intergenic 30.0%
! GAAGTAAATGTCTCTAAAGA+TGG - chr3_1:77003702-77003721 None:intergenic 30.0%
ATTTCATTCAAATGGTCGTT+CGG + chr3_1:77003725-77003744 Msa0376760:intron 30.0%
GTCATATTTCAAAGCTTAGA+AGG - chr3_1:77003779-77003798 None:intergenic 30.0%
AGAAAGACAATGAAAATCGT+AGG - chr3_1:77003801-77003820 None:intergenic 30.0%
! TACGATTTTCATTGTCTTTC+TGG + chr3_1:77003800-77003819 Msa0376760:intron 30.0%
! ACGATTTTCATTGTCTTTCT+GGG + chr3_1:77003801-77003820 Msa0376760:intron 30.0%
!!! TCATTTTTTGATCAAGCTCA+AGG + chr3_1:77003942-77003961 Msa0376760:intron 30.0%
! AAAGAAGTGTGAATCACATT+TGG - chr3_1:77004110-77004129 None:intergenic 30.0%
AAATGAAAAATCCAACCTGA+AGG + chr3_1:77004254-77004273 Msa0376760:CDS 30.0%
AATGAAAAATCCAACCTGAA+GGG + chr3_1:77004255-77004274 Msa0376760:CDS 30.0%
ATGTATTTGGTCATTCATGA+AGG - chr3_1:77004441-77004460 None:intergenic 30.0%
ATACATGGCATTCAACATAA+TGG - chr3_1:77004678-77004697 None:intergenic 30.0%
GACAAATGGAGTAATATACA+TGG - chr3_1:77004693-77004712 None:intergenic 30.0%
GACACTTAATAAGAGACAAA+TGG - chr3_1:77004707-77004726 None:intergenic 30.0%
CCCTTATTAATAGTAGTTAG+TGG - chr3_1:77004810-77004829 None:intergenic 30.0%
TGACAGAAGTCTCATATAAA+CGG - chr3_1:77004915-77004934 None:intergenic 30.0%
! ACTCAATTGTGATCTTTTAC+AGG + chr3_1:77005026-77005045 Msa0376760:intron 30.0%
ATATGCAGAAATACAACCAT+CGG + chr3_1:77005215-77005234 Msa0376760:CDS 30.0%
TTGAAGTGCAGAAAGAAGAA+TGG + chr3_1:77001980-77001999 Msa0376760:exon 35.0%
GTTTGTTCTCTTGTAGTTGT+AGG + chr3_1:77002192-77002211 Msa0376760:intron 35.0%
ATGGAACTGAGAATAAACCA+AGG + chr3_1:77002235-77002254 Msa0376760:CDS 35.0%
TTGTTGAGACTAAGTAACCT+TGG - chr3_1:77002255-77002274 None:intergenic 35.0%
CGTACAAGATTATTAGGCTA+AGG + chr3_1:77002467-77002486 Msa0376760:intron 35.0%
GTTGAATTGTTTGTCCAAAC+TGG - chr3_1:77002494-77002513 None:intergenic 35.0%
TCACAGTGCTATACTGAATA+AGG + chr3_1:77002598-77002617 Msa0376760:intron 35.0%
ACAGACTTGTCAAAACCATT+TGG - chr3_1:77002950-77002969 None:intergenic 35.0%
AAAAAAAAAGGAGCAGGGTT+AGG - chr3_1:77003281-77003300 None:intergenic 35.0%
!!! TAGTTTTGGTTTGGTTTGCT+GGG - chr3_1:77003555-77003574 None:intergenic 35.0%
!!! TTAGTTTTGGTTTGGTTTGC+TGG - chr3_1:77003556-77003575 None:intergenic 35.0%
TATGTTACTGTTAGTGGAGA+AGG - chr3_1:77003604-77003623 None:intergenic 35.0%
TAGGAAGCCTATTACAAGTT+TGG + chr3_1:77003664-77003683 Msa0376760:intron 35.0%
AGGAAGCCTATTACAAGTTT+GGG + chr3_1:77003665-77003684 Msa0376760:intron 35.0%
TTTCATTCAAATGGTCGTTC+GGG + chr3_1:77003726-77003745 Msa0376760:intron 35.0%
! CTCAAGGCAATTTTCCATTT+AGG + chr3_1:77003958-77003977 Msa0376760:intron 35.0%
! AGGCAATTTTCCATTTAGGT+TGG + chr3_1:77003962-77003981 Msa0376760:intron 35.0%
CATTTGTGAAGTCACATTTC+CGG - chr3_1:77004239-77004258 None:intergenic 35.0%
ATGAAAAATCCAACCTGAAG+GGG + chr3_1:77004256-77004275 Msa0376760:CDS 35.0%
GACAGAAGTTGTAATGTCAA+AGG + chr3_1:77004332-77004351 Msa0376760:CDS 35.0%
TTCTTACGATTCTAAACACC+TGG + chr3_1:77004472-77004491 Msa0376760:intron 35.0%
TATAAGTTTATACGTGCTCC+AGG - chr3_1:77004493-77004512 None:intergenic 35.0%
TATGAATCACAACTTCCAAG+TGG - chr3_1:77004968-77004987 None:intergenic 35.0%
TGAGTCAGTGTCTTGTAATA+TGG - chr3_1:77005011-77005030 None:intergenic 35.0%
! ATTGTGATCTTTTACAGGTG+TGG + chr3_1:77005031-77005050 Msa0376760:intron 35.0%
GTGTTGGATCGTGTTAATTT+CGG + chr3_1:77005068-77005087 Msa0376760:CDS 35.0%
TGTTGGATCGTGTTAATTTC+GGG + chr3_1:77005069-77005088 Msa0376760:CDS 35.0%
!! TTTAGGAACACAGTTTTGTC+AGG + chr3_1:77005116-77005135 Msa0376760:CDS 35.0%
!! GTTTTTGAGGACACTATCAT+TGG + chr3_1:77005173-77005192 Msa0376760:CDS 35.0%
!! TATATAAGAGTGCCTTGATG+AGG + chr3_1:77005341-77005360 Msa0376760:three_prime_UTR 35.0%
TTTGGTTGAGTAGTTGCGTA+TGG - chr3_1:77002042-77002061 None:intergenic 40.0%
TCTCTTGTAGTTGTAGGAGA+AGG + chr3_1:77002198-77002217 Msa0376760:intron 40.0%
ATAAGCTGCAAGAATACCAC+AGG - chr3_1:77002292-77002311 None:intergenic 40.0%
TATTAGGCTAAGGACCAGTT+TGG + chr3_1:77002477-77002496 Msa0376760:intron 40.0%
GTTCAATGAGACGCTTGATT+TGG + chr3_1:77002653-77002672 Msa0376760:intron 40.0%
TACTCTCAACATATGCACTC+AGG + chr3_1:77002764-77002783 Msa0376760:intron 40.0%
ACTCTCAACATATGCACTCA+GGG + chr3_1:77002765-77002784 Msa0376760:intron 40.0%
ATGTTAGCATGGAGAGAAAC+AGG - chr3_1:77002825-77002844 None:intergenic 40.0%
!! GTTTTGGCACTTGTCGTTAA+TGG + chr3_1:77003102-77003121 Msa0376760:intron 40.0%
TCGTTAATGGCAATTGTCTG+TGG + chr3_1:77003115-77003134 Msa0376760:intron 40.0%
CTTTCTTCTTCTACACCAGT+TGG - chr3_1:77003157-77003176 None:intergenic 40.0%
! GATCCCTTGTTGTCTCAATT+TGG + chr3_1:77003235-77003254 Msa0376760:intron 40.0%
TAGCGACAGAAATACAACAG+TGG + chr3_1:77003364-77003383 Msa0376760:intron 40.0%
ATACAACAGTGGCCGTATAT+AGG + chr3_1:77003375-77003394 Msa0376760:intron 40.0%
TATGACGCTGGGATATACTA+CGG + chr3_1:77003428-77003447 Msa0376760:intron 40.0%
!!! GTTGGTTTTCGCTTTGGTTT+TGG - chr3_1:77003505-77003524 None:intergenic 40.0%
!!! AGTTTTGGTTTGGTTTGCTG+GGG - chr3_1:77003554-77003573 None:intergenic 40.0%
GTCTGCTATGTTACTGTTAG+TGG - chr3_1:77003610-77003629 None:intergenic 40.0%
AACATAGCAGACCTAACACA+TGG + chr3_1:77003618-77003637 Msa0376760:intron 40.0%
TAACCAAACCCATGTGTAGA+GGG - chr3_1:77003646-77003665 None:intergenic 40.0%
GGTAAAATGTCAAGAGTCTG+AGG + chr3_1:77003747-77003766 Msa0376760:intron 40.0%
!! TTCATTGTCTTTCTGGGATC+TGG + chr3_1:77003807-77003826 Msa0376760:intron 40.0%
GTGTGAATCACATTTGGCTA+AGG - chr3_1:77004104-77004123 None:intergenic 40.0%
! GCATTTGTTGGCAACACAAT+TGG + chr3_1:77004177-77004196 Msa0376760:CDS 40.0%
AACACAATTGGTCAGGCAAA+TGG + chr3_1:77004189-77004208 Msa0376760:CDS 40.0%
! ACGACAAAGCATTAGATCTC+CGG + chr3_1:77004217-77004236 Msa0376760:CDS 40.0%
ATGTCAGATGCCAAGTTTGA+CGG + chr3_1:77004300-77004319 Msa0376760:CDS 40.0%
ATGTCAAAGGCTTATGCAGT+TGG + chr3_1:77004345-77004364 Msa0376760:CDS 40.0%
TGTCAAAGGCTTATGCAGTT+GGG + chr3_1:77004346-77004365 Msa0376760:CDS 40.0%
TCAACTGAGTCTGAATGTTG+AGG + chr3_1:77004406-77004425 Msa0376760:intron 40.0%
!! TTTGAAAGTGTTCAGCCACT+TGG + chr3_1:77004950-77004969 Msa0376760:intron 40.0%
ATCTTCAGGGAGCTGTATTT+AGG + chr3_1:77005099-77005118 Msa0376760:CDS 40.0%
TTCCAGTTTAGCATCGTCAA+AGG - chr3_1:77005147-77005166 None:intergenic 40.0%
TTTGACGATGCTAAACTGGA+AGG + chr3_1:77005146-77005165 Msa0376760:CDS 40.0%
! TCTACTAGTTCTCCTCATCA+AGG - chr3_1:77005356-77005375 None:intergenic 40.0%
CGGGAGTTGAATTGAAAGGT+TGG - chr3_1:77002006-77002025 None:intergenic 45.0%
TTCGCGGGAGTTGAATTGAA+AGG - chr3_1:77002010-77002029 None:intergenic 45.0%
GTAGTTGCGTATGGACAAAC+TGG - chr3_1:77002033-77002052 None:intergenic 45.0%
AGTGGTGAAACATGGTCGTT+TGG - chr3_1:77002060-77002079 None:intergenic 45.0%
GAAGCAGAAGTGGTGAAACA+TGG - chr3_1:77002068-77002087 None:intergenic 45.0%
CCAGAGCAAGTGATTGTGAA+GGG - chr3_1:77002092-77002111 None:intergenic 45.0%
ACCAGAGCAAGTGATTGTGA+AGG - chr3_1:77002093-77002112 None:intergenic 45.0%
!! AAAATCAAGGGTGTTGCCTG+TGG + chr3_1:77002273-77002292 Msa0376760:CDS 45.0%
AACCTGAGTAGCAGCAGTAA+CGG - chr3_1:77002337-77002356 None:intergenic 45.0%
CTCTCAACATATGCACTCAG+GGG + chr3_1:77002766-77002785 Msa0376760:intron 45.0%
ACTCAGGGGAAGAGATCAAA+TGG + chr3_1:77002780-77002799 Msa0376760:intron 45.0%
CACTCGGTATCATGTTAGCA+TGG - chr3_1:77002836-77002855 None:intergenic 45.0%
TCCTGATCAACTGTGACACT+CGG - chr3_1:77002852-77002871 None:intergenic 45.0%
TGGCAATTGTCTGTGGAATG+TGG + chr3_1:77003122-77003141 Msa0376760:intron 45.0%
TGTCTGTGGAATGTGGTCAT+AGG + chr3_1:77003129-77003148 Msa0376760:intron 45.0%
ATGTGGTCATAGGAACCAAC+TGG + chr3_1:77003139-77003158 Msa0376760:intron 45.0%
AAAAGGAGCAGGGTTAGGAA+GGG - chr3_1:77003276-77003295 None:intergenic 45.0%
AAAAAGGAGCAGGGTTAGGA+AGG - chr3_1:77003277-77003296 None:intergenic 45.0%
TAAGACACTCCCAAAACTCG+CGG + chr3_1:77003338-77003357 Msa0376760:intron 45.0%
!! TCGCTATTTCCGCGAGTTTT+GGG - chr3_1:77003350-77003369 None:intergenic 45.0%
! TTTGGTGTGCCGCCTATATA+CGG - chr3_1:77003390-77003409 None:intergenic 45.0%
!! TTCGAGTGGTTTGGGTGTTT+TGG - chr3_1:77003408-77003427 None:intergenic 45.0%
GCGTCATATTCGAGTGGTTT+GGG - chr3_1:77003416-77003435 None:intergenic 45.0%
AGCGTCATATTCGAGTGGTT+TGG - chr3_1:77003417-77003436 None:intergenic 45.0%
AAACCACTCGAATATGACGC+TGG + chr3_1:77003416-77003435 Msa0376760:intron 45.0%
AACCACTCGAATATGACGCT+GGG + chr3_1:77003417-77003436 Msa0376760:intron 45.0%
AACCAAACCCATGTGTAGAG+GGG - chr3_1:77003645-77003664 None:intergenic 45.0%
CTAACCAAACCCATGTGTAG+AGG - chr3_1:77003647-77003666 None:intergenic 45.0%
! CTCTACACATGGGTTTGGTT+AGG + chr3_1:77003645-77003664 Msa0376760:intron 45.0%
! GGTCTTGTACTAGGAAGTCT+CGG + chr3_1:77003828-77003847 Msa0376760:intron 45.0%
ATTGGGCTCAGTTGACAATG+GGG - chr3_1:77004145-77004164 None:intergenic 45.0%
GATTGGGCTCAGTTGACAAT+GGG - chr3_1:77004146-77004165 None:intergenic 45.0%
TGTTGGCAACACAATTGGTC+AGG + chr3_1:77004182-77004201 Msa0376760:CDS 45.0%
GTCAAAGGCTTATGCAGTTG+GGG + chr3_1:77004347-77004366 Msa0376760:CDS 45.0%
TCAAAGGCTTATGCAGTTGG+GGG + chr3_1:77004348-77004367 Msa0376760:CDS 45.0%
GGACTTCTCAAATGCAGTGT+TGG + chr3_1:77005052-77005071 Msa0376760:CDS 45.0%
TTTCGGGAAAGCAGATCTTC+AGG + chr3_1:77005085-77005104 Msa0376760:CDS 45.0%
TTCGGGAAAGCAGATCTTCA+GGG + chr3_1:77005086-77005105 Msa0376760:CDS 45.0%
CAGTTTAGCATCGTCAAAGG+TGG - chr3_1:77005144-77005163 None:intergenic 45.0%
CACCTTTGACGATGCTAAAC+TGG + chr3_1:77005142-77005161 Msa0376760:CDS 45.0%
!! ACTGGAAGGTGCAGTTTTTG+AGG + chr3_1:77005160-77005179 Msa0376760:CDS 45.0%
TCCACACCCTTGCTTATCTG+CGG - chr3_1:77001929-77001948 None:intergenic 50.0%
! AGATAAGCAAGGGTGTGGAG+TGG + chr3_1:77001930-77001949 Msa0376760:five_prime_UTR 50.0%
!! GTATGGACAAACTGGTTCGC+GGG - chr3_1:77002025-77002044 None:intergenic 50.0%
!! CGTATGGACAAACTGGTTCG+CGG - chr3_1:77002026-77002045 None:intergenic 50.0%
TGTGAAGGGTGAAGCAGAAG+TGG - chr3_1:77002078-77002097 None:intergenic 50.0%
CCCTTCACAATCACTTGCTC+TGG + chr3_1:77002089-77002108 Msa0376760:CDS 50.0%
GAAGGCGAAGCTGAGTTAGA+TGG + chr3_1:77002216-77002235 Msa0376760:CDS 50.0%
ACCTGAGTAGCAGCAGTAAC+GGG - chr3_1:77002336-77002355 None:intergenic 50.0%
ACCGAGTGTCACAGTTGATC+AGG + chr3_1:77002848-77002867 Msa0376760:intron 50.0%
!! GTCGCTATTTCCGCGAGTTT+TGG - chr3_1:77003351-77003370 None:intergenic 50.0%
CAACAGTGGCCGTATATAGG+CGG + chr3_1:77003378-77003397 Msa0376760:intron 50.0%
ATCCCAGCGTCATATTCGAG+TGG - chr3_1:77003422-77003441 None:intergenic 50.0%
!!! GCAGTGGTTGGTTTTCGCTT+TGG - chr3_1:77003511-77003530 None:intergenic 50.0%
AAGCGAAAACCAACCACTGC+AGG + chr3_1:77003511-77003530 Msa0376760:intron 50.0%
AGCGAAAACCAACCACTGCA+GGG + chr3_1:77003512-77003531 Msa0376760:intron 50.0%
!! TTTTTAGGCCCTGCAGTGGT+TGG - chr3_1:77003523-77003542 None:intergenic 50.0%
TGTAGAGGGGACCATGTGTT+AGG - chr3_1:77003632-77003651 None:intergenic 50.0%
ACATGGTCCCCTCTACACAT+GGG + chr3_1:77003635-77003654 Msa0376760:intron 50.0%
!! CTGGGATCTGGTCTTGTACT+AGG + chr3_1:77003819-77003838 Msa0376760:intron 50.0%
TTGGGCTCAGTTGACAATGG+GGG - chr3_1:77004144-77004163 None:intergenic 50.0%
CGATTGGGCTCAGTTGACAA+TGG - chr3_1:77004147-77004166 None:intergenic 50.0%
AATGCACGTTCGCAGCGATT+GGG - chr3_1:77004162-77004181 None:intergenic 50.0%
AAATGCACGTTCGCAGCGAT+TGG - chr3_1:77004163-77004182 None:intergenic 50.0%
CATGTCAGCACCGTCAAACT+TGG - chr3_1:77004313-77004332 None:intergenic 50.0%
AAATACAACCATCGGCGACG+AGG + chr3_1:77005223-77005242 Msa0376760:CDS 50.0%
AATACAACCATCGGCGACGA+GGG + chr3_1:77005224-77005243 Msa0376760:CDS 50.0%
TCCCGTTACTGCTGCTACTC+AGG + chr3_1:77002332-77002351 Msa0376760:CDS 55.0%
!!! GGTGTTTTTAGGCCCTGCAG+TGG - chr3_1:77003527-77003546 None:intergenic 55.0%
! GCTGGGGCTCAGGTGTTTTT+AGG - chr3_1:77003538-77003557 None:intergenic 55.0%
CACATGGTCCCCTCTACACA+TGG + chr3_1:77003634-77003653 Msa0376760:intron 55.0%
GTCCCCTCTACACATGGGTT+TGG + chr3_1:77003640-77003659 Msa0376760:intron 55.0%
CGCTGCGAACGTGCATTTGT+TGG + chr3_1:77004165-77004184 Msa0376760:CDS 55.0%
CAGAGTCTTCCCCTTCAGGT+TGG - chr3_1:77004268-77004287 None:intergenic 55.0%
CAGACAGAGTCTTCCCCTTC+AGG - chr3_1:77004272-77004291 None:intergenic 55.0%
! GCAGTTGGGGGCAGCTTTAA+AGG + chr3_1:77004360-77004379 Msa0376760:CDS 55.0%
! ACGCAGAGGTATGCTGCTGC+TGG - chr3_1:77003461-77003480 None:intergenic 60.0%
!! GGTTTGGTTTGCTGGGGCTC+AGG - chr3_1:77003548-77003567 None:intergenic 60.0%
!! GACGCTCGTTGGTGACGCAG+AGG - chr3_1:77003475-77003494 None:intergenic 65.0%
TTGGCTCCTGCGACGCTCGT+TGG - chr3_1:77003486-77003505 None:intergenic 65.0%
GACGAGGGTCGAGCTGAGCT+AGG + chr3_1:77005239-77005258 Msa0376760:CDS 65.0%
! GCGTCACCAACGAGCGTCGC+AGG + chr3_1:77003477-77003496 Msa0376760:intron 70.0%
AGCTCGACCCTCGTCGCCGA+TGG - chr3_1:77005234-77005253 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 77001926 77005550 77001926 ID=Msa0376760;Name=Msa0376760
chr3_1 mRNA 77001926 77005550 77001926 ID=Msa0376760-mRNA-1;Parent=Msa0376760;Name=Msa0376760-mRNA-1;_AED=0.11;_eAED=0.11;_QI=73|1|1|1|1|1|4|279|242
chr3_1 exon 77001926 77002110 77001926 ID=Msa0376760-mRNA-1:exon:18346;Parent=Msa0376760-mRNA-1
chr3_1 exon 77002208 77002353 77002208 ID=Msa0376760-mRNA-1:exon:18347;Parent=Msa0376760-mRNA-1
chr3_1 exon 77004135 77004381 77004135 ID=Msa0376760-mRNA-1:exon:18348;Parent=Msa0376760-mRNA-1
chr3_1 exon 77005048 77005550 77005048 ID=Msa0376760-mRNA-1:exon:18349;Parent=Msa0376760-mRNA-1
chr3_1 five_prime_UTR 77001926 77001998 77001926 ID=Msa0376760-mRNA-1:five_prime_utr;Parent=Msa0376760-mRNA-1
chr3_1 CDS 77001999 77002110 77001999 ID=Msa0376760-mRNA-1:cds;Parent=Msa0376760-mRNA-1
chr3_1 CDS 77002208 77002353 77002208 ID=Msa0376760-mRNA-1:cds;Parent=Msa0376760-mRNA-1
chr3_1 CDS 77004135 77004381 77004135 ID=Msa0376760-mRNA-1:cds;Parent=Msa0376760-mRNA-1
chr3_1 CDS 77005048 77005271 77005048 ID=Msa0376760-mRNA-1:cds;Parent=Msa0376760-mRNA-1
chr3_1 three_prime_UTR 77005272 77005550 77005272 ID=Msa0376760-mRNA-1:three_prime_utr;Parent=Msa0376760-mRNA-1
Gene Sequence

>Msa0376760

ATGGCCAACCTTTCAATTCAACTCCCGCGAACCAGTTTGTCCATACGCAACTACTCAACCAAACGACCATGTTTCACCACTTCTGCTTCACCCTTCACAATCACTTGCTCTGTTGTAGGAGAAGGCGAAGCTGAGTTAGATGGAACTGAGAATAAACCAAGGTTACTTAGTCTCAACAAAATCAAGGGTGTTGCCTGTGGTATTCTTGCAGCTTATGCTGTTACTTCTGCTTCATTTCCCGTTACTGCTGCTACTCAGAGACTGCCCCCATTGTCAACTGAGCCCAATCGCTGCGAACGTGCATTTGTTGGCAACACAATTGGTCAGGCAAATGGTGTGTACGACAAAGCATTAGATCTCCGGAAATGTGACTTCACAAATGAAAAATCCAACCTGAAGGGGAAGACTCTGTCTGCAGCACTAATGTCAGATGCCAAGTTTGACGGTGCTGACATGACAGAAGTTGTAATGTCAAAGGCTTATGCAGTTGGGGGCAGCTTTAAAGGTGTGGACTTCTCAAATGCAGTGTTGGATCGTGTTAATTTCGGGAAAGCAGATCTTCAGGGAGCTGTATTTAGGAACACAGTTTTGTCAGGCTCCACCTTTGACGATGCTAAACTGGAAGGTGCAGTTTTTGAGGACACTATCATTGGTTACATTGATCTCCAAAAGATATGCAGAAATACAACCATCGGCGACGAGGGTCGAGCTGAGCTAGGATGTCGATGA

Protein sequence

>Msa0376760

MANLSIQLPRTSLSIRNYSTKRPCFTTSASPFTITCSVVGEGEAELDGTENKPRLLSLNKIKGVACGILAAYAVTSASFPVTAATQRLPPLSTEPNRCERAFVGNTIGQANGVYDKALDLRKCDFTNEKSNLKGKTLSAALMSDAKFDGADMTEVVMSKAYAVGGSFKGVDFSNAVLDRVNFGKADLQGAVFRNTVLSGSTFDDAKLEGAVFEDTIIGYIDLQKICRNTTIGDEGRAELGCR*