Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0232360 | XP_003593202.2 | 93.958 | 331 | 18 | 2 | 1 | 329 | 1 | 331 | 0.0 | 627 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0232360 | sp|Q9SH88|RRS1_ARATH | 60.615 | 325 | 119 | 3 | 1 | 324 | 1 | 317 | 1.05e-129 | 375 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0232360 | G7INW4 | 93.958 | 331 | 18 | 2 | 1 | 329 | 1 | 331 | 0.0 | 627 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0021220 | Msa0232360 | 0.803017 | 4.260754e-49 | -8.615850e-47 |
| Msa0025730 | Msa0232360 | 0.801518 | 8.668691e-49 | -8.615850e-47 |
| Msa0035130 | Msa0232360 | 0.808275 | 3.354515e-50 | -8.615850e-47 |
| Msa0043980 | Msa0232360 | 0.806243 | 9.043910e-50 | -8.615850e-47 |
| Msa0047160 | Msa0232360 | 0.812566 | 3.975863e-51 | -8.615850e-47 |
| Msa0054480 | Msa0232360 | 0.814447 | 1.533788e-51 | -8.615850e-47 |
| Msa0059040 | Msa0232360 | 0.801715 | 7.900648e-49 | -8.615850e-47 |
| Msa0059110 | Msa0232360 | 0.805914 | 1.060546e-49 | -8.615850e-47 |
| Msa0070700 | Msa0232360 | 0.813599 | 2.358916e-51 | -8.615850e-47 |
| Msa0071250 | Msa0232360 | 0.837211 | 5.940639e-57 | -8.615850e-47 |
| Msa0090520 | Msa0232360 | 0.800448 | 1.434723e-48 | -8.615850e-47 |
| Msa0094470 | Msa0232360 | 0.809426 | 1.903320e-50 | -8.615850e-47 |
| Msa0104240 | Msa0232360 | 0.805762 | 1.141564e-49 | -8.615850e-47 |
| Msa0112770 | Msa0232360 | 0.805695 | 1.179297e-49 | -8.615850e-47 |
| Msa0115400 | Msa0232360 | 0.826367 | 2.819758e-54 | -8.615850e-47 |
| Msa0127020 | Msa0232360 | 0.821804 | 3.322510e-53 | -8.615850e-47 |
| Msa0127780 | Msa0232360 | 0.804290 | 2.318750e-49 | -8.615850e-47 |
| Msa0137990 | Msa0232360 | 0.801415 | 9.102703e-49 | -8.615850e-47 |
| Msa0138020 | Msa0232360 | 0.806046 | 9.947574e-50 | -8.615850e-47 |
| Msa0144370 | Msa0232360 | 0.804245 | 2.369371e-49 | -8.615850e-47 |
| Msa0148080 | Msa0232360 | 0.826427 | 2.729671e-54 | -8.615850e-47 |
| Msa0169280 | Msa0232360 | 0.819751 | 9.850730e-53 | -8.615850e-47 |
| Msa0179190 | Msa0232360 | 0.803460 | 3.448777e-49 | -8.615850e-47 |
| Msa0204960 | Msa0232360 | 0.805928 | 1.053457e-49 | -8.615850e-47 |
| Msa0232360 | Msa0233370 | 0.806430 | 8.256709e-50 | -8.615850e-47 |
| Msa0232360 | Msa0241140 | 0.815551 | 8.723207e-52 | -8.615850e-47 |
| Msa0232360 | Msa0256480 | 0.811799 | 5.842374e-51 | -8.615850e-47 |
| Msa0232360 | Msa0279240 | 0.818938 | 1.509252e-52 | -8.615850e-47 |
| Msa0232360 | Msa0281530 | 0.804855 | 1.768171e-49 | -8.615850e-47 |
| Msa0232360 | Msa0307310 | 0.801862 | 7.369064e-49 | -8.615850e-47 |
| Msa0232360 | Msa0321690 | 0.808413 | 3.135851e-50 | -8.615850e-47 |
| Msa0232360 | Msa0345350 | 0.804866 | 1.758762e-49 | -8.615850e-47 |
| Msa0232360 | Msa0357900 | 0.847247 | 1.305004e-59 | -8.615850e-47 |
| Msa0232360 | Msa0388700 | 0.803873 | 2.831174e-49 | -8.615850e-47 |
| Msa0232360 | Msa0388950 | 0.800450 | 1.432783e-48 | -8.615850e-47 |
| Msa0232360 | Msa0397540 | 0.824145 | 9.460512e-54 | -8.615850e-47 |
| Msa0232360 | Msa0437020 | 0.805710 | 1.170572e-49 | -8.615850e-47 |
| Msa0232360 | Msa0450400 | -0.812325 | 4.488457e-51 | -8.615850e-47 |
| Msa0232360 | Msa0450480 | 0.822391 | 2.428607e-53 | -8.615850e-47 |
| Msa0232360 | Msa0455760 | 0.815283 | 1.000813e-51 | -8.615850e-47 |
| Msa0232360 | Msa0464100 | 0.801431 | 9.031606e-49 | -8.615850e-47 |
| Msa0232360 | Msa0481030 | 0.807468 | 4.980890e-50 | -8.615850e-47 |
| Msa0232360 | Msa0481280 | 0.834889 | 2.308422e-56 | -8.615850e-47 |
| Msa0232360 | Msa0482130 | 0.811465 | 6.908312e-51 | -8.615850e-47 |
| Msa0232360 | Msa0510930 | 0.809365 | 1.961588e-50 | -8.615850e-47 |
| Msa0232360 | Msa0529890 | 0.811593 | 6.479166e-51 | -8.615850e-47 |
| Msa0232360 | Msa0530290 | 0.803683 | 3.100493e-49 | -8.615850e-47 |
| Msa0232360 | Msa0542090 | 0.817132 | 3.864316e-52 | -8.615850e-47 |
| Msa0232360 | Msa0542130 | 0.815613 | 8.451504e-52 | -8.615850e-47 |
| Msa0232360 | Msa0548240 | 0.807262 | 5.509347e-50 | -8.615850e-47 |
| Msa0232360 | Msa0554290 | 0.809617 | 1.731721e-50 | -8.615850e-47 |
| Msa0232360 | Msa0558230 | 0.815670 | 8.209355e-52 | -8.615850e-47 |
| Msa0232360 | Msa0581280 | 0.835510 | 1.609180e-56 | -8.615850e-47 |
| Msa0232360 | Msa0585560 | 0.803381 | 3.581847e-49 | -8.615850e-47 |
| Msa0232360 | Msa0610130 | 0.813174 | 2.925587e-51 | -8.615850e-47 |
| Msa0232360 | Msa0610180 | 0.837644 | 4.604000e-57 | -8.615850e-47 |
| Msa0232360 | Msa0612960 | 0.816735 | 4.744022e-52 | -8.615850e-47 |
| Msa0232360 | Msa0615440 | 0.803831 | 2.889591e-49 | -8.615850e-47 |
| Msa0232360 | Msa0625720 | 0.805760 | 1.142400e-49 | -8.615850e-47 |
| Msa0232360 | Msa0672550 | 0.848359 | 6.445972e-60 | -8.615850e-47 |
| Msa0232360 | Msa0685140 | 0.803526 | 3.342226e-49 | -8.615850e-47 |
| Msa0232360 | Msa0689260 | 0.837030 | 6.609520e-57 | -8.615850e-47 |
| Msa0232360 | Msa0691290 | 0.819610 | 1.061075e-52 | -8.615850e-47 |
| Msa0232360 | Msa0692830 | 0.800254 | 1.570767e-48 | -8.615850e-47 |
| Msa0232360 | Msa0692950 | 0.808310 | 3.298711e-50 | -8.615850e-47 |
| Msa0232360 | Msa0698490 | 0.806374 | 8.487034e-50 | -8.615850e-47 |
| Msa0232360 | Msa0703910 | 0.821358 | 4.212135e-53 | -8.615850e-47 |
| Msa0232360 | Msa0711780 | 0.806330 | 8.670554e-50 | -8.615850e-47 |
| Msa0232360 | Msa0715700 | 0.814468 | 1.517607e-51 | -8.615850e-47 |
| Msa0232360 | Msa0741440 | 0.804953 | 1.686523e-49 | -8.615850e-47 |
| Msa0232360 | Msa0800370 | 0.804003 | 2.660597e-49 | -8.615850e-47 |
| Msa0232360 | Msa0822500 | 0.804353 | 2.249614e-49 | -8.615850e-47 |
| Msa0232360 | Msa0830540 | 0.801537 | 8.591806e-49 | -8.615850e-47 |
| Msa0232360 | Msa0945440 | 0.800692 | 1.279103e-48 | -8.615850e-47 |
| Msa0232360 | Msa0975320 | 0.807701 | 4.445226e-50 | -8.615850e-47 |
| Msa0232360 | Msa0980880 | 0.808694 | 2.730552e-50 | -8.615850e-47 |
| Msa0232360 | Msa0987370 | 0.850921 | 1.242272e-60 | -8.615850e-47 |
| Msa0232360 | Msa0989540 | 0.814080 | 1.848026e-51 | -8.615850e-47 |
| Msa0232360 | Msa1006840 | 0.804381 | 2.219907e-49 | -8.615850e-47 |
| Msa0232360 | Msa1036610 | 0.805671 | 1.192841e-49 | -8.615850e-47 |
| Msa0232360 | Msa1048220 | 0.805462 | 1.319654e-49 | -8.615850e-47 |
| Msa0232360 | Msa1091940 | 0.809350 | 1.976711e-50 | -8.615850e-47 |
| Msa0232360 | Msa1109680 | 0.812855 | 3.435466e-51 | -8.615850e-47 |
| Msa0232360 | Msa1123770 | 0.808020 | 3.802653e-50 | -8.615850e-47 |
| Msa0232360 | Msa1144040 | 0.831652 | 1.478322e-55 | -8.615850e-47 |
| Msa0232360 | Msa1160590 | 0.810669 | 1.027329e-50 | -8.615850e-47 |
| Msa0232360 | Msa1169910 | 0.809947 | 1.471018e-50 | -8.615850e-47 |
| Msa0232360 | Msa1176710 | 0.801451 | 8.948754e-49 | -8.615850e-47 |
| Msa0232360 | Msa1180500 | 0.805962 | 1.036255e-49 | -8.615850e-47 |
| Msa0232360 | Msa1181250 | 0.837075 | 6.435585e-57 | -8.615850e-47 |
| Msa0232360 | Msa1181330 | 0.833377 | 5.522436e-56 | -8.615850e-47 |
| Msa0232360 | Msa1209200 | 0.835647 | 1.485481e-56 | -8.615850e-47 |
| Msa0232360 | Msa1216260 | 0.836737 | 7.850896e-57 | -8.615850e-47 |
| Msa0232360 | Msa1231840 | 0.812845 | 3.454200e-51 | -8.615850e-47 |
| Msa0232360 | Msa1245930 | 0.801193 | 1.010411e-48 | -8.615850e-47 |
| Msa0232360 | Msa1254730 | 0.809996 | 1.435449e-50 | -8.615850e-47 |
| Msa0232360 | Msa1265630 | 0.816973 | 4.194536e-52 | -8.615850e-47 |
| Msa0232360 | Msa1280320 | 0.823593 | 1.274386e-53 | -8.615850e-47 |
| Msa0232360 | Msa1294820 | 0.854153 | 1.487360e-61 | -8.615850e-47 |
| Msa0232360 | Msa1302850 | 0.804007 | 2.656268e-49 | -8.615850e-47 |
| Msa0232360 | Msa1305660 | 0.802249 | 6.136433e-49 | -8.615850e-47 |
| Msa0232360 | Msa1307180 | 0.803988 | 2.679917e-49 | -8.615850e-47 |
| Msa0232360 | Msa1312520 | 0.810707 | 1.008065e-50 | -8.615850e-47 |
| Msa0232360 | Msa1313140 | 0.803030 | 4.233682e-49 | -8.615850e-47 |
| Msa0232360 | Msa1316360 | 0.814546 | 1.457991e-51 | -8.615850e-47 |
| Msa0232360 | Msa1332590 | 0.825247 | 5.202343e-54 | -8.615850e-47 |
| Msa0232360 | Msa1358250 | 0.834861 | 2.345660e-56 | -8.615850e-47 |
| Msa0232360 | Msa1358500 | 0.801226 | 9.949428e-49 | -8.615850e-47 |
| Msa0232360 | Msa1368360 | 0.804478 | 2.118941e-49 | -8.615850e-47 |
| Msa0232360 | Msa1385720 | 0.809609 | 1.738630e-50 | -8.615850e-47 |
| Msa0232360 | Msa1392780 | 0.848171 | 7.266802e-60 | -8.615850e-47 |
| Msa0232360 | Msa1394290 | 0.832603 | 8.602708e-56 | -8.615850e-47 |
| Msa0232360 | Msa1400580 | 0.804597 | 2.001226e-49 | -8.615850e-47 |
| Msa0232360 | Msa1412130 | 0.822243 | 2.629716e-53 | -8.615850e-47 |
| Msa0232360 | Msa1419870 | 0.808742 | 2.666517e-50 | -8.615850e-47 |
| Msa0232360 | Msa1425260 | 0.841926 | 3.533248e-58 | -8.615850e-47 |
| Msa0232360 | Msa1434090 | 0.819657 | 1.035118e-52 | -8.615850e-47 |
| Msa0232360 | Msa1437270 | 0.824563 | 7.544151e-54 | -8.615850e-47 |
| Msa0232360 | Msa1457920 | 0.801070 | 1.070937e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0232360 | MtrunA17_Chr2g0279161 | 93.958 | 331 | 18 | 2 | 1 | 329 | 1 | 331 | 0.0 | 627 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0232360 | AT2G37990.1 | 60.615 | 325 | 119 | 3 | 1 | 324 | 1 | 317 | 1.07e-130 | 375 |
Find 92 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCAAAATTACTGTGCTTT+TGG | 0.169446 | 2_2:-4620883 | None:intergenic |
| GGCCAAAACCTCCTACTAAA+TGG | 0.206025 | 2_2:+4618401 | Msa0232360:CDS |
| CGATTCTTTCCTTTATGTTT+TGG | 0.214740 | 2_2:-4620413 | None:intergenic |
| TCCCATTTAGTAGGAGGTTT+TGG | 0.249068 | 2_2:-4618403 | None:intergenic |
| CCTTAAATGACAATATAAAA+TGG | 0.282907 | 2_2:-4620989 | None:intergenic |
| GAGTATATCATGATTATTCT+TGG | 0.294298 | 2_2:-4620637 | None:intergenic |
| CTCGGGGTAATCTGGTGGTT+GGG | 0.302345 | 2_2:-4618250 | None:intergenic |
| GTTAAGGAGTGTTTACAAAA+AGG | 0.309485 | 2_2:+4618140 | Msa0232360:CDS |
| GGTGCGTGGGTTCCTGTTAT+AGG | 0.317411 | 2_2:-4620284 | None:intergenic |
| AAATTGAATCAGAAAGAAAA+TGG | 0.323039 | 2_2:+4617901 | Msa0232360:exon |
| GCGACTTCTTTGCCTATAAC+AGG | 0.351994 | 2_2:+4620272 | Msa0232360:CDS |
| GTAGGTTTAGCCTCAATAAT+AGG | 0.359792 | 2_2:-4618661 | None:intergenic |
| ATATCCATGTCTGCGTTTCC+AGG | 0.400440 | 2_2:-4618611 | None:intergenic |
| TATTAGGGTTGAAGTGGTTA+AGG | 0.401973 | 2_2:+4618124 | Msa0232360:intron |
| CCTTCGATTTATCATTCCTT+CGG | 0.407735 | 2_2:-4620792 | None:intergenic |
| CCCTCTACTCAAGATGTTGA+AGG | 0.416054 | 2_2:+4618206 | Msa0232360:CDS |
| CTGCCGGTAGCAGAAGGAAC+AGG | 0.421319 | 2_2:+4620561 | Msa0232360:CDS |
| CCAAGAGAAAAGAAAACAAA+AGG | 0.423905 | 2_2:+4619333 | Msa0232360:CDS |
| GGTAATCTGGTGGTTGGGGC+AGG | 0.425628 | 2_2:-4618245 | None:intergenic |
| GCAAACAGGTCCCATTTAGT+AGG | 0.428944 | 2_2:-4618412 | None:intergenic |
| TCTCGGGGTAATCTGGTGGT+TGG | 0.429457 | 2_2:-4618251 | None:intergenic |
| GAAAAGCCTCCAAAACATAA+AGG | 0.437070 | 2_2:+4620404 | Msa0232360:CDS |
| AATGAGTGATGAGGGTTGTT+TGG | 0.444453 | 2_2:-4617853 | None:intergenic |
| GGTTGACCTCGGTAATCTAA+TGG | 0.449578 | 2_2:+4617958 | Msa0232360:CDS |
| CAAGTTTATGATGAACCATC+TGG | 0.452578 | 2_2:+4618586 | Msa0232360:CDS |
| GCCAAAACCTCCTACTAAAT+GGG | 0.459534 | 2_2:+4618402 | Msa0232360:CDS |
| TCGGGGTAATCTGGTGGTTG+GGG | 0.468261 | 2_2:-4618249 | None:intergenic |
| TTGGCAAAAGGATCCTCGTC+TGG | 0.469582 | 2_2:-4619314 | None:intergenic |
| GGCACCACAAGTGATTATAC+TGG | 0.475390 | 2_2:+4621029 | Msa0232360:three_prime_UTR |
| ACCCCTGTTCCTTCTGCTAC+CGG | 0.485546 | 2_2:-4620564 | None:intergenic |
| GCCTCAACTGCCACAGCTAG+TGG | 0.485917 | 2_2:+4620353 | Msa0232360:CDS |
| AGGAACAGGGGTAGGATCAA+AGG | 0.493785 | 2_2:+4620575 | Msa0232360:CDS |
| TCAATTTCAGAGAGTTGAAA+CGG | 0.493965 | 2_2:-4617885 | None:intergenic |
| GGCTGCTAAGAATTTGTTCG+AGG | 0.502076 | 2_2:+4617937 | Msa0232360:CDS |
| CAAGAGAAAAGAAAACAAAA+GGG | 0.503360 | 2_2:+4619334 | Msa0232360:CDS |
| AAGGTTACCAAGGATGAATT+AGG | 0.504736 | 2_2:+4620314 | Msa0232360:CDS |
| GATGAATTAGGCAGTGTAGC+AGG | 0.505642 | 2_2:+4620326 | Msa0232360:CDS |
| CACAGTGACCAATGTGAAGA+AGG | 0.507110 | 2_2:+4620762 | Msa0232360:CDS |
| CTGCGTTTCCAGGTTCCAGA+TGG | 0.508540 | 2_2:-4618601 | None:intergenic |
| TACACTGCCTAATTCATCCT+TGG | 0.511559 | 2_2:-4620321 | None:intergenic |
| GTATAATCACTTGTGGTGCC+TGG | 0.511970 | 2_2:-4621026 | None:intergenic |
| TGTGGTGCCTGGTGTTGTGA+TGG | 0.514224 | 2_2:-4621015 | None:intergenic |
| ATGATGAACCATCTGGAACC+TGG | 0.518041 | 2_2:+4618593 | Msa0232360:CDS |
| AACCCACGCACCACAAAAGA+AGG | 0.519084 | 2_2:+4620295 | Msa0232360:CDS |
| AAAGAAAATGGAGATTGAGA+TGG | 0.520851 | 2_2:+4617913 | Msa0232360:exon |
| AGAAGCTATTCCTATTATTG+AGG | 0.529821 | 2_2:+4618651 | Msa0232360:CDS |
| CAAAGTTTGGGGCTTTACCT+AGG | 0.530560 | 2_2:+4619408 | Msa0232360:CDS |
| GAAAATGGAGATTGAGATGG+AGG | 0.531102 | 2_2:+4617916 | Msa0232360:exon |
| ACCACTAGCTGTGGCAGTTG+AGG | 0.531694 | 2_2:-4620354 | None:intergenic |
| TCTTCTCATCTAGTTCCTGC+CGG | 0.534818 | 2_2:+4620545 | Msa0232360:intron |
| CATACCCTTCTCAACAATCC+AGG | 0.537224 | 2_2:+4617999 | Msa0232360:CDS |
| AACAGGTCCCATTTAGTAGG+AGG | 0.542260 | 2_2:-4618409 | None:intergenic |
| ACCATGCAGCCATGTTCAGT+TGG | 0.543010 | 2_2:+4620247 | Msa0232360:intron |
| ATTCTCTATTAGGGTTGAAG+TGG | 0.546834 | 2_2:+4618118 | Msa0232360:intron |
| GTGATGAGGGTTGTTTGGTA+AGG | 0.555645 | 2_2:-4617848 | None:intergenic |
| TAGTTCCTGCCGGTAGCAGA+AGG | 0.558864 | 2_2:+4620555 | Msa0232360:intron |
| ACATACCTGGATTGTTGAGA+AGG | 0.562948 | 2_2:-4618004 | None:intergenic |
| CCTTCAACATCTTGAGTAGA+GGG | 0.564606 | 2_2:-4618206 | None:intergenic |
| AAGTCGCGGCCAACTGAACA+TGG | 0.566896 | 2_2:-4620256 | None:intergenic |
| ATTTCCAGTATAATCACTTG+TGG | 0.569183 | 2_2:-4621033 | None:intergenic |
| TCAACTGCCACAGCTAGTGG+TGG | 0.576419 | 2_2:+4620356 | Msa0232360:CDS |
| TGGAATTAGTTACCATCGGT+AGG | 0.578433 | 2_2:-4618679 | None:intergenic |
| CTGTTCCTTCTGCTACCGGC+AGG | 0.578497 | 2_2:-4620560 | None:intergenic |
| ACCTTCAACATCTTGAGTAG+AGG | 0.587465 | 2_2:-4618207 | None:intergenic |
| AACAAATCAAATGAGTGATG+AGG | 0.589062 | 2_2:-4617862 | None:intergenic |
| ACAAATCAAATGAGTGATGA+GGG | 0.590577 | 2_2:-4617861 | None:intergenic |
| AAGGCTTCCATCACAACACC+AGG | 0.597161 | 2_2:+4621008 | Msa0232360:three_prime_UTR |
| TGCCGGTAGCAGAAGGAACA+GGG | 0.605130 | 2_2:+4620562 | Msa0232360:CDS |
| CATACCTGGATTGTTGAGAA+GGG | 0.605884 | 2_2:-4618003 | None:intergenic |
| GGAACCTGGAAACGCAGACA+TGG | 0.610484 | 2_2:+4618607 | Msa0232360:CDS |
| AAGAGAAAAGAAAACAAAAG+GGG | 0.617318 | 2_2:+4619335 | Msa0232360:CDS |
| AGGGGTAGGATCAAAGGAGA+GGG | 0.618168 | 2_2:+4620581 | Msa0232360:CDS |
| AGGCATTATTAAGCGGAACA+AGG | 0.619070 | 2_2:+4618558 | Msa0232360:intron |
| CAACTGCCACAGCTAGTGGT+GGG | 0.621815 | 2_2:+4620357 | Msa0232360:CDS |
| GTTATGCAGGCATTATTAAG+CGG | 0.622663 | 2_2:+4618551 | Msa0232360:intron |
| TGGGGCAGGCAATTGAACGA+AGG | 0.628952 | 2_2:-4618231 | None:intergenic |
| GTAGCAGAAGGAACAGGGGT+AGG | 0.632666 | 2_2:+4620567 | Msa0232360:CDS |
| CCGAAGGAATGATAAATCGA+AGG | 0.634190 | 2_2:+4620792 | Msa0232360:CDS |
| AAACTTCCCACCACTAGCTG+TGG | 0.634673 | 2_2:-4620363 | None:intergenic |
| GTATGAATGATGAGAGTCGA+AGG | 0.637332 | 2_2:-4617981 | None:intergenic |
| GGGGCAGGCAATTGAACGAA+GGG | 0.637653 | 2_2:-4618230 | None:intergenic |
| AATTTGTTCGAGGTTGACCT+CGG | 0.638182 | 2_2:+4617947 | Msa0232360:CDS |
| TGATATACTCAATGTTAACA+AGG | 0.643030 | 2_2:+4620650 | Msa0232360:CDS |
| CAGGGGTAGGATCAAAGGAG+AGG | 0.644223 | 2_2:+4620580 | Msa0232360:CDS |
| ATTGAGGCTAAACCTACCGA+TGG | 0.658675 | 2_2:+4618667 | Msa0232360:CDS |
| TGTTATAGGCAAAGAAGTCG+CGG | 0.661140 | 2_2:-4620270 | None:intergenic |
| TGAAGAAGGAGAAAAGCCGA+AGG | 0.662135 | 2_2:+4620776 | Msa0232360:CDS |
| ACATAAAGGAAAGAATCGAA+AGG | 0.670337 | 2_2:+4620418 | Msa0232360:CDS |
| ACCACAAAAGAAGGTTACCA+AGG | 0.679267 | 2_2:+4620304 | Msa0232360:CDS |
| ATTATACTGGAAATTAACAG+AGG | 0.688238 | 2_2:+4621042 | Msa0232360:three_prime_UTR |
| GCCGGTAGCAGAAGGAACAG+GGG | 0.714140 | 2_2:+4620563 | Msa0232360:CDS |
| CGAAGGCCATTAGATTACCG+AGG | 0.720268 | 2_2:-4617964 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACTATTTATAAATGTTAA+GGG | + | chr2_2:4619142-4619161 | Msa0232360:intron | 10.0% |
| !! | AAAAAATTGAAAATTCTTTA+TGG | - | chr2_2:4620077-4620096 | None:intergenic | 10.0% |
| !! | TTATTAATCTATTCTCTATT+AGG | + | chr2_2:4618108-4618127 | Msa0232360:intron | 15.0% |
| !! | TATTAATCTATTCTCTATTA+GGG | + | chr2_2:4618109-4618128 | Msa0232360:intron | 15.0% |
| !!! | ACTTTTGTTATTATTCTTTT+TGG | + | chr2_2:4619014-4619033 | Msa0232360:intron | 15.0% |
| !!! | CTTTTGTTATTATTCTTTTT+GGG | + | chr2_2:4619015-4619034 | Msa0232360:intron | 15.0% |
| !! | CAAACTATTTATAAATGTTA+AGG | + | chr2_2:4619141-4619160 | Msa0232360:intron | 15.0% |
| !! | TTGATAAAAATGAGAAAAAT+CGG | + | chr2_2:4619363-4619382 | Msa0232360:CDS | 15.0% |
| !! | TTATTTACAAATCTATAGAT+TGG | - | chr2_2:4619788-4619807 | None:intergenic | 15.0% |
| !! | AAAAAATCGTAAATTCTTTA+AGG | - | chr2_2:4619844-4619863 | None:intergenic | 15.0% |
| !! | TAGACAAATAATTATTTACA+AGG | - | chr2_2:4620481-4620500 | None:intergenic | 15.0% |
| !! | AAATTGAATCAGAAAGAAAA+TGG | + | chr2_2:4617901-4617920 | Msa0232360:exon | 20.0% |
| !! | AATGAAAAATCAAATTGAAG+TGG | - | chr2_2:4618058-4618077 | None:intergenic | 20.0% |
| !! | AATTTCTTCTTCAATAAGAA+GGG | - | chr2_2:4618291-4618310 | None:intergenic | 20.0% |
| !! | AAATTTCTTCTTCAATAAGA+AGG | - | chr2_2:4618292-4618311 | None:intergenic | 20.0% |
| !! | AAAGTTCAGAAGTAATAAAA+TGG | - | chr2_2:4618531-4618550 | None:intergenic | 20.0% |
| !!! | ATAGGTTTCAATTTTAACTT+TGG | + | chr2_2:4618756-4618775 | Msa0232360:intron | 20.0% |
| !! | TGTATACTTACATATGTATT+TGG | + | chr2_2:4619604-4619623 | Msa0232360:intron | 20.0% |
| !! | GTTATTAATAATGAGTTTCT+AGG | + | chr2_2:4619702-4619721 | Msa0232360:intron | 20.0% |
| !!! | ACATTTTAACTTTATCCATA+AGG | + | chr2_2:4619948-4619967 | Msa0232360:intron | 20.0% |
| !! | TTTGCAAATCTAATTAACAA+AGG | - | chr2_2:4620021-4620040 | None:intergenic | 20.0% |
| !!! | CACAGTAATTTTGATTTTTA+TGG | + | chr2_2:4620890-4620909 | Msa0232360:exon | 20.0% |
| !! | CCTTAAATGACAATATAAAA+TGG | - | chr2_2:4620992-4621011 | None:intergenic | 20.0% |
| !!! | CCATTTTATATTGTCATTTA+AGG | + | chr2_2:4620989-4621008 | Msa0232360:three_prime_UTR | 20.0% |
| !!! | GACAAACTAACCTTTATTTT+TGG | - | chr2_2:4618437-4618456 | None:intergenic | 25.0% |
| ! | ACATAAACAACATCAACAAA+AGG | - | chr2_2:4618459-4618478 | None:intergenic | 25.0% |
| ! | TTGTTTATGTTGTCTGATTT+GGG | + | chr2_2:4618469-4618488 | Msa0232360:intron | 25.0% |
| ! | TTAGTACACACATGTTAAAT+AGG | - | chr2_2:4618798-4618817 | None:intergenic | 25.0% |
| ! | AAAGATCCAACATCTAAATT+AGG | + | chr2_2:4618868-4618887 | Msa0232360:intron | 25.0% |
| ! | CATGTTATGATTAAACATTG+TGG | - | chr2_2:4618917-4618936 | None:intergenic | 25.0% |
| ! | CAAGAATGATAATCTCTAAA+AGG | - | chr2_2:4619069-4619088 | None:intergenic | 25.0% |
| ! | AATCATAAGAATAGAACAAG+AGG | - | chr2_2:4619170-4619189 | None:intergenic | 25.0% |
| ! | CAAGAGAAAAGAAAACAAAA+GGG | + | chr2_2:4619334-4619353 | Msa0232360:CDS | 25.0% |
| ! | AAGAGAAAAGAAAACAAAAG+GGG | + | chr2_2:4619335-4619354 | Msa0232360:CDS | 25.0% |
| !! | TTACTGTTTTACAAGTTTGT+TGG | + | chr2_2:4619559-4619578 | Msa0232360:intron | 25.0% |
| ! | TGTAAGTATACAAATAGCAA+TGG | - | chr2_2:4619596-4619615 | None:intergenic | 25.0% |
| ! | GAGTATATCATGATTATTCT+TGG | - | chr2_2:4620640-4620659 | None:intergenic | 25.0% |
| ! | TGATATACTCAATGTTAACA+AGG | + | chr2_2:4620650-4620669 | Msa0232360:CDS | 25.0% |
| !! | ATCAAAATTACTGTGCTTTT+GGG | - | chr2_2:4620885-4620904 | None:intergenic | 25.0% |
| !! | AATCAAAATTACTGTGCTTT+TGG | - | chr2_2:4620886-4620905 | None:intergenic | 25.0% |
| !!! | TATGGAATCTTGTAGTTTTT+TGG | + | chr2_2:4620908-4620927 | Msa0232360:three_prime_UTR | 25.0% |
| ! | ATTATACTGGAAATTAACAG+AGG | + | chr2_2:4621042-4621061 | Msa0232360:three_prime_UTR | 25.0% |
| ACAAATCAAATGAGTGATGA+GGG | - | chr2_2:4617864-4617883 | None:intergenic | 30.0% | |
| AACAAATCAAATGAGTGATG+AGG | - | chr2_2:4617865-4617884 | None:intergenic | 30.0% | |
| TCAATTTCAGAGAGTTGAAA+CGG | - | chr2_2:4617888-4617907 | None:intergenic | 30.0% | |
| AAAGAAAATGGAGATTGAGA+TGG | + | chr2_2:4617913-4617932 | Msa0232360:exon | 30.0% | |
| GAAAAATCAAATTGAAGTGG+CGG | - | chr2_2:4618055-4618074 | None:intergenic | 30.0% | |
| !! | GTTAAGGAGTGTTTACAAAA+AGG | + | chr2_2:4618140-4618159 | Msa0232360:CDS | 30.0% |
| GTGTTTATCATTTGCTCATA+AGG | + | chr2_2:4618354-4618373 | Msa0232360:intron | 30.0% | |
| !!! | AACCTTTATTTTTGGCAAAC+AGG | - | chr2_2:4618429-4618448 | None:intergenic | 30.0% |
| GTTGTTTATGTTGTCTGATT+TGG | + | chr2_2:4618468-4618487 | Msa0232360:intron | 30.0% | |
| AGAAGCTATTCCTATTATTG+AGG | + | chr2_2:4618651-4618670 | Msa0232360:CDS | 30.0% | |
| AATGTGGAATTAGTTACCAT+CGG | - | chr2_2:4618686-4618705 | None:intergenic | 30.0% | |
| TAACCAAACGTTCGATAATA+GGG | - | chr2_2:4618713-4618732 | None:intergenic | 30.0% | |
| ATAACCAAACGTTCGATAAT+AGG | - | chr2_2:4618714-4618733 | None:intergenic | 30.0% | |
| ATGTAGTGCTATATCGTTAA+TGG | + | chr2_2:4619271-4619290 | Msa0232360:intron | 30.0% | |
| ! | TTTTCTTTTCTCTTGGCAAA+AGG | - | chr2_2:4619329-4619348 | None:intergenic | 30.0% |
| !!! | CCTTTTGTTTTCTTTTCTCT+TGG | - | chr2_2:4619336-4619355 | None:intergenic | 30.0% |
| CCAAGAGAAAAGAAAACAAA+AGG | + | chr2_2:4619333-4619352 | Msa0232360:CDS | 30.0% | |
| TTGAAAAATGCTGCAAAGTT+TGG | + | chr2_2:4619395-4619414 | Msa0232360:CDS | 30.0% | |
| TGAAAAATGCTGCAAAGTTT+GGG | + | chr2_2:4619396-4619415 | Msa0232360:CDS | 30.0% | |
| AGCTATCAATTACTTTGTAC+AGG | + | chr2_2:4619725-4619744 | Msa0232360:intron | 30.0% | |
| GCTATCAATTACTTTGTACA+GGG | + | chr2_2:4619726-4619745 | Msa0232360:intron | 30.0% | |
| CAAAACTGTTAAACAGACTA+AGG | - | chr2_2:4619889-4619908 | None:intergenic | 30.0% | |
| ! | AAATGTCTAAAGTAGACGTA+TGG | - | chr2_2:4619934-4619953 | None:intergenic | 30.0% |
| AATTCCACTGTAATTGTTAC+AGG | - | chr2_2:4620205-4620224 | None:intergenic | 30.0% | |
| TGTAACAATTACAGTGGAAT+TGG | + | chr2_2:4620204-4620223 | Msa0232360:intron | 30.0% | |
| GTAACAATTACAGTGGAATT+GGG | + | chr2_2:4620205-4620224 | Msa0232360:intron | 30.0% | |
| AAGTTTGACAAAAAATTGCC+AGG | + | chr2_2:4620380-4620399 | Msa0232360:CDS | 30.0% | |
| !! | TTCTTTCCTTTATGTTTTGG+AGG | - | chr2_2:4620413-4620432 | None:intergenic | 30.0% |
| ! | CGATTCTTTCCTTTATGTTT+TGG | - | chr2_2:4620416-4620435 | None:intergenic | 30.0% |
| ACATAAAGGAAAGAATCGAA+AGG | + | chr2_2:4620418-4620437 | Msa0232360:CDS | 30.0% | |
| ACTAGATGAGAAGATAACAA+AGG | - | chr2_2:4620539-4620558 | None:intergenic | 30.0% | |
| !! | TCAGAAGAAGCCTTTTAAAA+AGG | + | chr2_2:4620843-4620862 | Msa0232360:CDS | 30.0% |
| !! | CAGAAGAAGCCTTTTAAAAA+GGG | + | chr2_2:4620844-4620863 | Msa0232360:CDS | 30.0% |
| ! | TTTTTGGATACACTTTTCAG+TGG | + | chr2_2:4620924-4620943 | Msa0232360:three_prime_UTR | 30.0% |
| ATTTCCAGTATAATCACTTG+TGG | - | chr2_2:4621036-4621055 | None:intergenic | 30.0% | |
| ATTCTCTATTAGGGTTGAAG+TGG | + | chr2_2:4618118-4618137 | Msa0232360:intron | 35.0% | |
| TATTAGGGTTGAAGTGGTTA+AGG | + | chr2_2:4618124-4618143 | Msa0232360:intron | 35.0% | |
| ! | GTACATACATGTTTTTCTCG+GGG | - | chr2_2:4618269-4618288 | None:intergenic | 35.0% |
| ! | GGTACATACATGTTTTTCTC+GGG | - | chr2_2:4618270-4618289 | None:intergenic | 35.0% |
| ! | GGGTACATACATGTTTTTCT+CGG | - | chr2_2:4618271-4618290 | None:intergenic | 35.0% |
| ! | TATAATGTTTTCAGCTGCCA+AGG | + | chr2_2:4618380-4618399 | Msa0232360:intron | 35.0% |
| GACCTGTTTGCCAAAAATAA+AGG | + | chr2_2:4618424-4618443 | Msa0232360:CDS | 35.0% | |
| ! | ACTTCTGAACTTTGTTATGC+AGG | + | chr2_2:4618538-4618557 | Msa0232360:intron | 35.0% |
| GTTATGCAGGCATTATTAAG+CGG | + | chr2_2:4618551-4618570 | Msa0232360:intron | 35.0% | |
| CAAGTTTATGATGAACCATC+TGG | + | chr2_2:4618586-4618605 | Msa0232360:CDS | 35.0% | |
| GTAGGTTTAGCCTCAATAAT+AGG | - | chr2_2:4618664-4618683 | None:intergenic | 35.0% | |
| TCGATAATAGGGATTGAATG+TGG | - | chr2_2:4618702-4618721 | None:intergenic | 35.0% | |
| AATCCCTATTATCGAACGTT+TGG | + | chr2_2:4618707-4618726 | Msa0232360:intron | 35.0% | |
| ! | TTTAACTTTGGATACTTGCG+AGG | + | chr2_2:4618768-4618787 | Msa0232360:intron | 35.0% |
| ACATTGAATTAGACCTCCTT+TGG | + | chr2_2:4618838-4618857 | Msa0232360:intron | 35.0% | |
| ATCTTTAAACATGCCAAAGG+AGG | - | chr2_2:4618854-4618873 | None:intergenic | 35.0% | |
| TGGATCTTTAAACATGCCAA+AGG | - | chr2_2:4618857-4618876 | None:intergenic | 35.0% | |
| ACGGTTCCTAATTTAGATGT+TGG | - | chr2_2:4618877-4618896 | None:intergenic | 35.0% | |
| ACTACTCTTGAAAGCTCATA+AGG | - | chr2_2:4618947-4618966 | None:intergenic | 35.0% | |
| GAAAAATGCTGCAAAGTTTG+GGG | + | chr2_2:4619397-4619416 | Msa0232360:CDS | 35.0% | |
| AATGGTTAAGAGAGTTACCT+AGG | - | chr2_2:4619428-4619447 | None:intergenic | 35.0% | |
| ! | TCAAGGCTAGTTATTGGAAA+TGG | - | chr2_2:4619446-4619465 | None:intergenic | 35.0% |
| !! | ATTTCCAATAACTAGCCTTG+AGG | + | chr2_2:4619445-4619464 | Msa0232360:intron | 35.0% |
| ! | AAAACCTCAAGGCTAGTTAT+TGG | - | chr2_2:4619452-4619471 | None:intergenic | 35.0% |
| AACAATGCATGGATATGTCA+AGG | - | chr2_2:4619642-4619661 | None:intergenic | 35.0% | |
| GTTCAACAGAAAACAATGCA+TGG | - | chr2_2:4619653-4619672 | None:intergenic | 35.0% | |
| TATGTTCAACCGCAATTAAG+TGG | - | chr2_2:4619753-4619772 | None:intergenic | 35.0% | |
| ACTGAAGCATAGTAACCTTA+TGG | - | chr2_2:4619966-4619985 | None:intergenic | 35.0% | |
| GTTACTATGCTTCAGTGATT+TGG | + | chr2_2:4619970-4619989 | Msa0232360:intron | 35.0% | |
| AAAGTCCTTAGTCTGTTCAA+AGG | + | chr2_2:4620112-4620131 | Msa0232360:intron | 35.0% | |
| CAAAACCTTTGAACAGACTA+AGG | - | chr2_2:4620120-4620139 | None:intergenic | 35.0% | |
| TACACCTGTAACAATTACAG+TGG | + | chr2_2:4620198-4620217 | Msa0232360:intron | 35.0% | |
| AAGGTTACCAAGGATGAATT+AGG | + | chr2_2:4620314-4620333 | Msa0232360:CDS | 35.0% | |
| GAAAAGCCTCCAAAACATAA+AGG | + | chr2_2:4620404-4620423 | Msa0232360:CDS | 35.0% | |
| AATTGTACTCTCTGCATTCT+AGG | + | chr2_2:4620735-4620754 | Msa0232360:intron | 35.0% | |
| CCTTCGATTTATCATTCCTT+CGG | - | chr2_2:4620795-4620814 | None:intergenic | 35.0% | |
| ! | TTCTTGGCACCCTTTTTAAA+AGG | - | chr2_2:4620856-4620875 | None:intergenic | 35.0% |
| !! | TTTAAAAAGGGTGCCAAGAA+AGG | + | chr2_2:4620856-4620875 | Msa0232360:CDS | 35.0% |
| AATGAGTGATGAGGGTTGTT+TGG | - | chr2_2:4617856-4617875 | None:intergenic | 40.0% | |
| GAAAATGGAGATTGAGATGG+AGG | + | chr2_2:4617916-4617935 | Msa0232360:exon | 40.0% | |
| ! | AATTTGTTCGAGGTTGACCT+CGG | + | chr2_2:4617947-4617966 | Msa0232360:CDS | 40.0% |
| GTATGAATGATGAGAGTCGA+AGG | - | chr2_2:4617984-4618003 | None:intergenic | 40.0% | |
| CATACCTGGATTGTTGAGAA+GGG | - | chr2_2:4618006-4618025 | None:intergenic | 40.0% | |
| ACATACCTGGATTGTTGAGA+AGG | - | chr2_2:4618007-4618026 | None:intergenic | 40.0% | |
| CCTTCAACATCTTGAGTAGA+GGG | - | chr2_2:4618209-4618228 | None:intergenic | 40.0% | |
| ACCTTCAACATCTTGAGTAG+AGG | - | chr2_2:4618210-4618229 | None:intergenic | 40.0% | |
| ! | ATGTTTTTCTCGGGGTAATC+TGG | - | chr2_2:4618261-4618280 | None:intergenic | 40.0% |
| GCCAAAACCTCCTACTAAAT+GGG | + | chr2_2:4618402-4618421 | Msa0232360:CDS | 40.0% | |
| ! | TCCCATTTAGTAGGAGGTTT+TGG | - | chr2_2:4618406-4618425 | None:intergenic | 40.0% |
| !! | ATGTTGTCTGATTTGGGCTT+TGG | + | chr2_2:4618475-4618494 | Msa0232360:intron | 40.0% |
| AGGCATTATTAAGCGGAACA+AGG | + | chr2_2:4618558-4618577 | Msa0232360:intron | 40.0% | |
| TGGAATTAGTTACCATCGGT+AGG | - | chr2_2:4618682-4618701 | None:intergenic | 40.0% | |
| AACGTTTGGTTATCGCTGTT+GGG | + | chr2_2:4618721-4618740 | Msa0232360:intron | 40.0% | |
| !! | GGACGATCTGATGCTTTTTA+CGG | - | chr2_2:4618896-4618915 | None:intergenic | 40.0% |
| !!! | GTTTTGAAGTCCTGACTGAT+GGG | - | chr2_2:4618982-4619001 | None:intergenic | 40.0% |
| !!! | AGTTTTGAAGTCCTGACTGA+TGG | - | chr2_2:4618983-4619002 | None:intergenic | 40.0% |
| TCAGTCAGGACTTCAAAACT+TGG | + | chr2_2:4618983-4619002 | Msa0232360:intron | 40.0% | |
| TGCATGGATATGTCAAGGTA+GGG | - | chr2_2:4619637-4619656 | None:intergenic | 40.0% | |
| ATGCATGGATATGTCAAGGT+AGG | - | chr2_2:4619638-4619657 | None:intergenic | 40.0% | |
| GGAGTTTGTACATAGTTCAG+AGG | - | chr2_2:4619868-4619887 | None:intergenic | 40.0% | |
| TGTTATAGGCAAAGAAGTCG+CGG | - | chr2_2:4620273-4620292 | None:intergenic | 40.0% | |
| ACCACAAAAGAAGGTTACCA+AGG | + | chr2_2:4620304-4620323 | Msa0232360:CDS | 40.0% | |
| !! | TCCTTGGTAACCTTCTTTTG+TGG | - | chr2_2:4620308-4620327 | None:intergenic | 40.0% |
| TACACTGCCTAATTCATCCT+TGG | - | chr2_2:4620324-4620343 | None:intergenic | 40.0% | |
| ! | GCTTTTCTCCTTCTTCACAT+TGG | - | chr2_2:4620773-4620792 | None:intergenic | 40.0% |
| CCGAAGGAATGATAAATCGA+AGG | + | chr2_2:4620792-4620811 | Msa0232360:CDS | 40.0% | |
| GTGATGAGGGTTGTTTGGTA+AGG | - | chr2_2:4617851-4617870 | None:intergenic | 45.0% | |
| ! | GGCTGCTAAGAATTTGTTCG+AGG | + | chr2_2:4617937-4617956 | Msa0232360:CDS | 45.0% |
| GGTTGACCTCGGTAATCTAA+TGG | + | chr2_2:4617958-4617977 | Msa0232360:CDS | 45.0% | |
| CATACCCTTCTCAACAATCC+AGG | + | chr2_2:4617999-4618018 | Msa0232360:CDS | 45.0% | |
| ! | AGAAAGGAGGTGTACATACC+TGG | - | chr2_2:4618020-4618039 | None:intergenic | 45.0% |
| CCCTCTACTCAAGATGTTGA+AGG | + | chr2_2:4618206-4618225 | Msa0232360:CDS | 45.0% | |
| ! | TTTTTCTCGGGGTAATCTGG+TGG | - | chr2_2:4618258-4618277 | None:intergenic | 45.0% |
| !! | TTAGTAGGAGGTTTTGGCCT+TGG | - | chr2_2:4618400-4618419 | None:intergenic | 45.0% |
| GGCCAAAACCTCCTACTAAA+TGG | + | chr2_2:4618401-4618420 | Msa0232360:CDS | 45.0% | |
| AACAGGTCCCATTTAGTAGG+AGG | - | chr2_2:4618412-4618431 | None:intergenic | 45.0% | |
| GCAAACAGGTCCCATTTAGT+AGG | - | chr2_2:4618415-4618434 | None:intergenic | 45.0% | |
| ! | ATGATGAACCATCTGGAACC+TGG | + | chr2_2:4618593-4618612 | Msa0232360:CDS | 45.0% |
| ATATCCATGTCTGCGTTTCC+AGG | - | chr2_2:4618614-4618633 | None:intergenic | 45.0% | |
| ATTGAGGCTAAACCTACCGA+TGG | + | chr2_2:4618667-4618686 | Msa0232360:CDS | 45.0% | |
| GAACGTTTGGTTATCGCTGT+TGG | + | chr2_2:4618720-4618739 | Msa0232360:intron | 45.0% | |
| ACGTTTGGTTATCGCTGTTG+GGG | + | chr2_2:4618722-4618741 | Msa0232360:intron | 45.0% | |
| GTTGGGGACAACTAGGAAAT+AGG | + | chr2_2:4618738-4618757 | Msa0232360:intron | 45.0% | |
| ! | CCTGACTGATGGGTAAATCA+TGG | - | chr2_2:4618972-4618991 | None:intergenic | 45.0% |
| CCATGATTTACCCATCAGTC+AGG | + | chr2_2:4618969-4618988 | Msa0232360:intron | 45.0% | |
| ! | ACATTTTGCAGATCCAGACG+AGG | + | chr2_2:4619301-4619320 | Msa0232360:intron | 45.0% |
| ! | CAAAGTTTGGGGCTTTACCT+AGG | + | chr2_2:4619408-4619427 | Msa0232360:CDS | 45.0% |
| ACCATGCAACGAAAACCTCA+AGG | - | chr2_2:4619463-4619482 | None:intergenic | 45.0% | |
| CACGAGCAGATGATGTATAG+TGG | - | chr2_2:4619506-4619525 | None:intergenic | 45.0% | |
| ATACATCATCTGCTCGTGCT+TGG | + | chr2_2:4619508-4619527 | Msa0232360:intron | 45.0% | |
| GTACAGGGTCCACTTAATTG+CGG | + | chr2_2:4619741-4619760 | Msa0232360:intron | 45.0% | |
| GCGACTTCTTTGCCTATAAC+AGG | + | chr2_2:4620272-4620291 | Msa0232360:CDS | 45.0% | |
| ! | AACCTTCTTTTGTGGTGCGT+GGG | - | chr2_2:4620300-4620319 | None:intergenic | 45.0% |
| ! | TAACCTTCTTTTGTGGTGCG+TGG | - | chr2_2:4620301-4620320 | None:intergenic | 45.0% |
| GATGAATTAGGCAGTGTAGC+AGG | + | chr2_2:4620326-4620345 | Msa0232360:CDS | 45.0% | |
| !!! | TGTTTTGGAGGCTTTTCACC+TGG | - | chr2_2:4620401-4620420 | None:intergenic | 45.0% |
| ! | TCTTCTCATCTAGTTCCTGC+CGG | + | chr2_2:4620545-4620564 | Msa0232360:intron | 45.0% |
| CACAGTGACCAATGTGAAGA+AGG | + | chr2_2:4620762-4620781 | Msa0232360:CDS | 45.0% | |
| TGAAGAAGGAGAAAAGCCGA+AGG | + | chr2_2:4620776-4620795 | Msa0232360:CDS | 45.0% | |
| !!! | TGCTTTTGGGTTGCCTTTCT+TGG | - | chr2_2:4620872-4620891 | None:intergenic | 45.0% |
| GTATAATCACTTGTGGTGCC+TGG | - | chr2_2:4621029-4621048 | None:intergenic | 45.0% | |
| GGCACCACAAGTGATTATAC+TGG | + | chr2_2:4621029-4621048 | Msa0232360:three_prime_UTR | 45.0% | |
| CGAAGGCCATTAGATTACCG+AGG | - | chr2_2:4617967-4617986 | None:intergenic | 50.0% | |
| TATCGCTGTTGGGGACAACT+AGG | + | chr2_2:4618731-4618750 | Msa0232360:intron | 50.0% | |
| TTGGCAAAAGGATCCTCGTC+TGG | - | chr2_2:4619317-4619336 | None:intergenic | 50.0% | |
| ! | GCCTTGAGGTTTTCGTTGCA+TGG | + | chr2_2:4619459-4619478 | Msa0232360:intron | 50.0% |
| ACCATGCAGCCATGTTCAGT+TGG | + | chr2_2:4620247-4620266 | Msa0232360:intron | 50.0% | |
| AACCCACGCACCACAAAAGA+AGG | + | chr2_2:4620295-4620314 | Msa0232360:CDS | 50.0% | |
| AAACTTCCCACCACTAGCTG+TGG | - | chr2_2:4620366-4620385 | None:intergenic | 50.0% | |
| AGGAACAGGGGTAGGATCAA+AGG | + | chr2_2:4620575-4620594 | Msa0232360:CDS | 50.0% | |
| AGGGGTAGGATCAAAGGAGA+GGG | + | chr2_2:4620581-4620600 | Msa0232360:CDS | 50.0% | |
| AAGGCTTCCATCACAACACC+AGG | + | chr2_2:4621008-4621027 | Msa0232360:three_prime_UTR | 50.0% | |
| GCGCTCGAAAGGAAGAAAGG+AGG | - | chr2_2:4618033-4618052 | None:intergenic | 55.0% | |
| GGGGCAGGCAATTGAACGAA+GGG | - | chr2_2:4618233-4618252 | None:intergenic | 55.0% | |
| TGGGGCAGGCAATTGAACGA+AGG | - | chr2_2:4618234-4618253 | None:intergenic | 55.0% | |
| TCGGGGTAATCTGGTGGTTG+GGG | - | chr2_2:4618252-4618271 | None:intergenic | 55.0% | |
| CTCGGGGTAATCTGGTGGTT+GGG | - | chr2_2:4618253-4618272 | None:intergenic | 55.0% | |
| TCTCGGGGTAATCTGGTGGT+TGG | - | chr2_2:4618254-4618273 | None:intergenic | 55.0% | |
| CTGCGTTTCCAGGTTCCAGA+TGG | - | chr2_2:4618604-4618623 | None:intergenic | 55.0% | |
| GGAACCTGGAAACGCAGACA+TGG | + | chr2_2:4618607-4618626 | Msa0232360:CDS | 55.0% | |
| GCCAACTGAACATGGCTGCA+TGG | - | chr2_2:4620251-4620270 | None:intergenic | 55.0% | |
| AAGTCGCGGCCAACTGAACA+TGG | - | chr2_2:4620259-4620278 | None:intergenic | 55.0% | |
| GGTGCGTGGGTTCCTGTTAT+AGG | - | chr2_2:4620287-4620306 | None:intergenic | 55.0% | |
| ACCACTAGCTGTGGCAGTTG+AGG | - | chr2_2:4620357-4620376 | None:intergenic | 55.0% | |
| TCAACTGCCACAGCTAGTGG+TGG | + | chr2_2:4620356-4620375 | Msa0232360:CDS | 55.0% | |
| CAACTGCCACAGCTAGTGGT+GGG | + | chr2_2:4620357-4620376 | Msa0232360:CDS | 55.0% | |
| TAGTTCCTGCCGGTAGCAGA+AGG | + | chr2_2:4620555-4620574 | Msa0232360:intron | 55.0% | |
| TGCCGGTAGCAGAAGGAACA+GGG | + | chr2_2:4620562-4620581 | Msa0232360:CDS | 55.0% | |
| ACCCCTGTTCCTTCTGCTAC+CGG | - | chr2_2:4620567-4620586 | None:intergenic | 55.0% | |
| GTAGCAGAAGGAACAGGGGT+AGG | + | chr2_2:4620567-4620586 | Msa0232360:CDS | 55.0% | |
| CAGGGGTAGGATCAAAGGAG+AGG | + | chr2_2:4620580-4620599 | Msa0232360:CDS | 55.0% | |
| !! | TGTGGTGCCTGGTGTTGTGA+TGG | - | chr2_2:4621018-4621037 | None:intergenic | 55.0% |
| GCGGCGCTCGAAAGGAAGAA+AGG | - | chr2_2:4618036-4618055 | None:intergenic | 60.0% | |
| TTGAAGTGGCGGCGCTCGAA+AGG | - | chr2_2:4618044-4618063 | None:intergenic | 60.0% | |
| GGTAATCTGGTGGTTGGGGC+AGG | - | chr2_2:4618248-4618267 | None:intergenic | 60.0% | |
| GCCTCAACTGCCACAGCTAG+TGG | + | chr2_2:4620353-4620372 | Msa0232360:CDS | 60.0% | |
| CTGTTCCTTCTGCTACCGGC+AGG | - | chr2_2:4620563-4620582 | None:intergenic | 60.0% | |
| CTGCCGGTAGCAGAAGGAAC+AGG | + | chr2_2:4620561-4620580 | Msa0232360:CDS | 60.0% | |
| GCCGGTAGCAGAAGGAACAG+GGG | + | chr2_2:4620563-4620582 | Msa0232360:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 4617818 | 4621116 | 4617818 | ID=Msa0232360;Name=Msa0232360 |
| chr2_2 | mRNA | 4617818 | 4621116 | 4617818 | ID=Msa0232360-mRNA-1;Parent=Msa0232360;Name=Msa0232360-mRNA-1;_AED=0.08;_eAED=0.08;_QI=102|1|1|1|1|1|8|219|329 |
| chr2_2 | exon | 4617818 | 4618020 | 4617818 | ID=Msa0232360-mRNA-1:exon:1938;Parent=Msa0232360-mRNA-1 |
| chr2_2 | exon | 4618130 | 4618280 | 4618130 | ID=Msa0232360-mRNA-1:exon:1939;Parent=Msa0232360-mRNA-1 |
| chr2_2 | exon | 4618394 | 4618445 | 4618394 | ID=Msa0232360-mRNA-1:exon:1940;Parent=Msa0232360-mRNA-1 |
| chr2_2 | exon | 4618560 | 4618688 | 4618560 | ID=Msa0232360-mRNA-1:exon:1941;Parent=Msa0232360-mRNA-1 |
| chr2_2 | exon | 4619312 | 4619429 | 4619312 | ID=Msa0232360-mRNA-1:exon:1942;Parent=Msa0232360-mRNA-1 |
| chr2_2 | exon | 4620256 | 4620439 | 4620256 | ID=Msa0232360-mRNA-1:exon:1943;Parent=Msa0232360-mRNA-1 |
| chr2_2 | exon | 4620558 | 4620671 | 4620558 | ID=Msa0232360-mRNA-1:exon:1944;Parent=Msa0232360-mRNA-1 |
| chr2_2 | exon | 4620757 | 4621116 | 4620757 | ID=Msa0232360-mRNA-1:exon:1945;Parent=Msa0232360-mRNA-1 |
| chr2_2 | five_prime_UTR | 4617818 | 4617919 | 4617818 | ID=Msa0232360-mRNA-1:five_prime_utr;Parent=Msa0232360-mRNA-1 |
| chr2_2 | CDS | 4617920 | 4618020 | 4617920 | ID=Msa0232360-mRNA-1:cds;Parent=Msa0232360-mRNA-1 |
| chr2_2 | CDS | 4618130 | 4618280 | 4618130 | ID=Msa0232360-mRNA-1:cds;Parent=Msa0232360-mRNA-1 |
| chr2_2 | CDS | 4618394 | 4618445 | 4618394 | ID=Msa0232360-mRNA-1:cds;Parent=Msa0232360-mRNA-1 |
| chr2_2 | CDS | 4618560 | 4618688 | 4618560 | ID=Msa0232360-mRNA-1:cds;Parent=Msa0232360-mRNA-1 |
| chr2_2 | CDS | 4619312 | 4619429 | 4619312 | ID=Msa0232360-mRNA-1:cds;Parent=Msa0232360-mRNA-1 |
| chr2_2 | CDS | 4620256 | 4620439 | 4620256 | ID=Msa0232360-mRNA-1:cds;Parent=Msa0232360-mRNA-1 |
| chr2_2 | CDS | 4620558 | 4620671 | 4620558 | ID=Msa0232360-mRNA-1:cds;Parent=Msa0232360-mRNA-1 |
| chr2_2 | CDS | 4620757 | 4620897 | 4620757 | ID=Msa0232360-mRNA-1:cds;Parent=Msa0232360-mRNA-1 |
| chr2_2 | three_prime_UTR | 4620898 | 4621116 | 4620898 | ID=Msa0232360-mRNA-1:three_prime_utr;Parent=Msa0232360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
