Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011960 | Msa0341030 | 0.824581 | 7.470002e-54 | -8.615850e-47 |
| Msa0024210 | Msa0341030 | -0.806713 | 7.197618e-50 | -8.615850e-47 |
| Msa0025730 | Msa0341030 | 0.815844 | 7.505107e-52 | -8.615850e-47 |
| Msa0047160 | Msa0341030 | 0.802928 | 4.445082e-49 | -8.615850e-47 |
| Msa0054480 | Msa0341030 | 0.812562 | 3.982554e-51 | -8.615850e-47 |
| Msa0059040 | Msa0341030 | 0.807553 | 4.779070e-50 | -8.615850e-47 |
| Msa0059110 | Msa0341030 | 0.817204 | 3.722202e-52 | -8.615850e-47 |
| Msa0063530 | Msa0341030 | 0.808273 | 3.358041e-50 | -8.615850e-47 |
| Msa0090360 | Msa0341030 | 0.811053 | 8.485691e-51 | -8.615850e-47 |
| Msa0094470 | Msa0341030 | 0.815328 | 9.781413e-52 | -8.615850e-47 |
| Msa0105620 | Msa0341030 | 0.800208 | 1.605229e-48 | -8.615850e-47 |
| Msa0112770 | Msa0341030 | 0.817716 | 2.854778e-52 | -8.615850e-47 |
| Msa0137840 | Msa0341030 | 0.806526 | 7.880069e-50 | -8.615850e-47 |
| Msa0150820 | Msa0341030 | 0.807364 | 5.239909e-50 | -8.615850e-47 |
| Msa0159170 | Msa0341030 | 0.801427 | 9.050804e-49 | -8.615850e-47 |
| Msa0160550 | Msa0341030 | 0.825887 | 3.667894e-54 | -8.615850e-47 |
| Msa0171540 | Msa0341030 | 0.806314 | 8.734981e-50 | -8.615850e-47 |
| Msa0178590 | Msa0341030 | 0.828948 | 6.769319e-55 | -8.615850e-47 |
| Msa0178640 | Msa0341030 | 0.824673 | 7.105852e-54 | -8.615850e-47 |
| Msa0184040 | Msa0341030 | 0.812087 | 5.057032e-51 | -8.615850e-47 |
| Msa0184780 | Msa0341030 | 0.802945 | 4.408413e-49 | -8.615850e-47 |
| Msa0187120 | Msa0341030 | 0.804312 | 2.295126e-49 | -8.615850e-47 |
| Msa0205230 | Msa0341030 | 0.800540 | 1.373553e-48 | -8.615850e-47 |
| Msa0220720 | Msa0341030 | 0.820960 | 5.202514e-53 | -8.615850e-47 |
| Msa0228070 | Msa0341030 | 0.812744 | 3.634914e-51 | -8.615850e-47 |
| Msa0231980 | Msa0341030 | 0.806267 | 8.937058e-50 | -8.615850e-47 |
| Msa0232050 | Msa0341030 | 0.805975 | 1.029409e-49 | -8.615850e-47 |
| Msa0255080 | Msa0341030 | 0.829641 | 4.594601e-55 | -8.615850e-47 |
| Msa0259370 | Msa0341030 | 0.801576 | 8.435239e-49 | -8.615850e-47 |
| Msa0262050 | Msa0341030 | 0.801006 | 1.103426e-48 | -8.615850e-47 |
| Msa0289250 | Msa0341030 | 0.809594 | 1.752070e-50 | -8.615850e-47 |
| Msa0299870 | Msa0341030 | 0.803750 | 3.003478e-49 | -8.615850e-47 |
| Msa0309750 | Msa0341030 | 0.810932 | 9.014506e-51 | -8.615850e-47 |
| Msa0309770 | Msa0341030 | 0.804070 | 2.577511e-49 | -8.615850e-47 |
| Msa0319170 | Msa0341030 | 0.807477 | 4.959720e-50 | -8.615850e-47 |
| Msa0336420 | Msa0341030 | 0.816089 | 6.618665e-52 | -8.615850e-47 |
| Msa0337240 | Msa0341030 | 0.815081 | 1.109562e-51 | -8.615850e-47 |
| Msa0341030 | Msa0344540 | 0.807129 | 5.877722e-50 | -8.615850e-47 |
| Msa0341030 | Msa0366890 | 0.802941 | 4.417732e-49 | -8.615850e-47 |
| Msa0341030 | Msa0376300 | 0.806721 | 7.170106e-50 | -8.615850e-47 |
| Msa0341030 | Msa0376310 | 0.806232 | 9.088714e-50 | -8.615850e-47 |
| Msa0341030 | Msa0385580 | 0.823366 | 1.439792e-53 | -8.615850e-47 |
| Msa0341030 | Msa0388700 | 0.821344 | 4.244020e-53 | -8.615850e-47 |
| Msa0341030 | Msa0397540 | 0.801329 | 9.478295e-49 | -8.615850e-47 |
| Msa0341030 | Msa0402790 | 0.806887 | 6.611534e-50 | -8.615850e-47 |
| Msa0341030 | Msa0422840 | 0.802164 | 6.388477e-49 | -8.615850e-47 |
| Msa0341030 | Msa0481530 | 0.813889 | 2.036475e-51 | -8.615850e-47 |
| Msa0341030 | Msa0493410 | 0.808272 | 3.360294e-50 | -8.615850e-47 |
| Msa0341030 | Msa0529890 | 0.812069 | 5.103893e-51 | -8.615850e-47 |
| Msa0341030 | Msa0548240 | 0.811144 | 8.110713e-51 | -8.615850e-47 |
| Msa0341030 | Msa0555450 | 0.802989 | 4.316813e-49 | -8.615850e-47 |
| Msa0341030 | Msa0556060 | 0.803663 | 3.131298e-49 | -8.615850e-47 |
| Msa0341030 | Msa0585560 | 0.811500 | 6.785486e-51 | -8.615850e-47 |
| Msa0341030 | Msa0592440 | 0.824982 | 6.009743e-54 | -8.615850e-47 |
| Msa0341030 | Msa0610430 | 0.835242 | 1.880403e-56 | -8.615850e-47 |
| Msa0341030 | Msa0615490 | 0.807219 | 5.623808e-50 | -8.615850e-47 |
| Msa0341030 | Msa0617640 | 0.812931 | 3.307267e-51 | -8.615850e-47 |
| Msa0341030 | Msa0625720 | 0.809474 | 1.858695e-50 | -8.615850e-47 |
| Msa0341030 | Msa0663390 | 0.814614 | 1.408817e-51 | -8.615850e-47 |
| Msa0341030 | Msa0689260 | 0.811609 | 6.425708e-51 | -8.615850e-47 |
| Msa0341030 | Msa0692040 | -0.801283 | 9.685304e-49 | -8.615850e-47 |
| Msa0341030 | Msa0692830 | 0.815225 | 1.031088e-51 | -8.615850e-47 |
| Msa0341030 | Msa0692950 | 0.802769 | 4.794334e-49 | -8.615850e-47 |
| Msa0341030 | Msa0698540 | 0.812616 | 3.876092e-51 | -8.615850e-47 |
| Msa0341030 | Msa0709500 | 0.807578 | 4.721366e-50 | -8.615850e-47 |
| Msa0341030 | Msa0711780 | 0.806992 | 6.281982e-50 | -8.615850e-47 |
| Msa0341030 | Msa0715700 | 0.820445 | 6.835212e-53 | -8.615850e-47 |
| Msa0341030 | Msa0716840 | 0.815658 | 8.259485e-52 | -8.615850e-47 |
| Msa0341030 | Msa0743950 | 0.806142 | 9.497111e-50 | -8.615850e-47 |
| Msa0341030 | Msa0769920 | 0.817686 | 2.899177e-52 | -8.615850e-47 |
| Msa0341030 | Msa0790850 | 0.808327 | 3.270630e-50 | -8.615850e-47 |
| Msa0341030 | Msa0793800 | 0.812234 | 4.697814e-51 | -8.615850e-47 |
| Msa0341030 | Msa0794670 | 0.808850 | 2.529375e-50 | -8.615850e-47 |
| Msa0341030 | Msa0808270 | 0.832179 | 1.095745e-55 | -8.615850e-47 |
| Msa0341030 | Msa0902760 | 0.813523 | 2.451936e-51 | -8.615850e-47 |
| Msa0341030 | Msa0968680 | 0.812251 | 4.656434e-51 | -8.615850e-47 |
| Msa0341030 | Msa0970030 | 0.807711 | 4.422096e-50 | -8.615850e-47 |
| Msa0341030 | Msa0987370 | 0.800162 | 1.639857e-48 | -8.615850e-47 |
| Msa0341030 | Msa0993330 | 0.805371 | 1.378622e-49 | -8.615850e-47 |
| Msa0341030 | Msa1013400 | 0.813163 | 2.941087e-51 | -8.615850e-47 |
| Msa0341030 | Msa1051200 | 0.825904 | 3.634062e-54 | -8.615850e-47 |
| Msa0341030 | Msa1077030 | 0.800994 | 1.110154e-48 | -8.615850e-47 |
| Msa0341030 | Msa1091940 | 0.834700 | 2.575097e-56 | -8.615850e-47 |
| Msa0341030 | Msa1093530 | 0.817087 | 3.954313e-52 | -8.615850e-47 |
| Msa0341030 | Msa1137700 | 0.816989 | 4.161163e-52 | -8.615850e-47 |
| Msa0341030 | Msa1147970 | 0.803770 | 2.975204e-49 | -8.615850e-47 |
| Msa0341030 | Msa1160590 | 0.827882 | 1.223955e-54 | -8.615850e-47 |
| Msa0341030 | Msa1171360 | 0.806997 | 6.266193e-50 | -8.615850e-47 |
| Msa0341030 | Msa1181250 | 0.807917 | 3.999624e-50 | -8.615850e-47 |
| Msa0341030 | Msa1217470 | 0.815362 | 9.613330e-52 | -8.615850e-47 |
| Msa0341030 | Msa1224810 | 0.803440 | 3.483310e-49 | -8.615850e-47 |
| Msa0341030 | Msa1253020 | 0.804189 | 2.433925e-49 | -8.615850e-47 |
| Msa0341030 | Msa1254730 | 0.809615 | 1.733783e-50 | -8.615850e-47 |
| Msa0341030 | Msa1259490 | -0.820010 | 8.595646e-53 | -8.615850e-47 |
| Msa0341030 | Msa1265630 | 0.805205 | 1.493603e-49 | -8.615850e-47 |
| Msa0341030 | Msa1294820 | 0.802996 | 4.303968e-49 | -8.615850e-47 |
| Msa0341030 | Msa1299180 | -0.809406 | 1.922452e-50 | -8.615850e-47 |
| Msa0341030 | Msa1302850 | 0.809678 | 1.680805e-50 | -8.615850e-47 |
| Msa0341030 | Msa1305340 | 0.804581 | 2.017259e-49 | -8.615850e-47 |
| Msa0341030 | Msa1305660 | 0.805386 | 1.368857e-49 | -8.615850e-47 |
| Msa0341030 | Msa1306920 | 0.802016 | 6.852113e-49 | -8.615850e-47 |
| Msa0341030 | Msa1332590 | 0.813476 | 2.511379e-51 | -8.615850e-47 |
| Msa0341030 | Msa1356440 | 0.801378 | 9.263360e-49 | -8.615850e-47 |
| Msa0341030 | Msa1358250 | 0.811955 | 5.405057e-51 | -8.615850e-47 |
| Msa0341030 | Msa1359040 | 0.800360 | 1.495091e-48 | -8.615850e-47 |
| Msa0341030 | Msa1370070 | -0.803361 | 3.616660e-49 | -8.615850e-47 |
| Msa0341030 | Msa1386780 | 0.801690 | 7.993484e-49 | -8.615850e-47 |
| Msa0341030 | Msa1392780 | 0.807842 | 4.148917e-50 | -8.615850e-47 |
| Msa0341030 | Msa1394290 | 0.811533 | 6.676383e-51 | -8.615850e-47 |
| Msa0341030 | Msa1402420 | -0.802282 | 6.041878e-49 | -8.615850e-47 |
| Msa0341030 | Msa1410100 | 0.823989 | 1.029235e-53 | -8.615850e-47 |
| Msa0341030 | Msa1419870 | 0.818414 | 1.984804e-52 | -8.615850e-47 |
| Msa0341030 | Msa1432420 | 0.804580 | 2.017448e-49 | -8.615850e-47 |
| Msa0341030 | Msa1433390 | 0.808851 | 2.528058e-50 | -8.615850e-47 |
| Msa0341030 | Msa1457920 | 0.829442 | 5.137379e-55 | -8.615850e-47 |
| Msa0341030 | Msa1466540 | 0.814639 | 1.390800e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 25 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCTATGAAATCTAGTAAA+AGG | 0.216994 | 2_4:-62441127 | Msa0341030:CDS |
| CAAATGGTTCTGCTATTCTT+TGG | 0.337879 | 2_4:-62440919 | Msa0341030:CDS |
| TGCTATGAAATCTAGTAAAA+GGG | 0.426684 | 2_4:-62441126 | Msa0341030:CDS |
| ATATGGAAAACTAGCTGAAA+AGG | 0.450116 | 2_4:-62441045 | Msa0341030:intron |
| TTGCTGTCAAATAACTTGAC+AGG | 0.465743 | 2_4:+62441020 | None:intergenic |
| AAATCTAGTAAAAGGGGTAG+TGG | 0.485823 | 2_4:-62441119 | Msa0341030:CDS |
| TCAACTCCACCGTCCTTGAC+AGG | 0.488859 | 2_4:-62441094 | Msa0341030:CDS |
| GAAGACGAGTTGGTTCTGCC+TGG | 0.494135 | 2_4:-62440978 | Msa0341030:CDS |
| ATCGAAGACTTGCAGACCCC+AGG | 0.499552 | 2_4:+62440960 | None:intergenic |
| AAGACGAGTTGGTTCTGCCT+GGG | 0.519388 | 2_4:-62440977 | Msa0341030:CDS |
| TGTGGAGGCATGCGTGCAAA+TGG | 0.541660 | 2_4:-62440935 | Msa0341030:CDS |
| TTACAGCCATGGCATGGAAG+GGG | 0.555613 | 2_4:-62441152 | Msa0341030:intron |
| TTTACAGCCATGGCATGGAA+GGG | 0.559234 | 2_4:-62441153 | Msa0341030:intron |
| TGACAGCAAGAACTGAGCTA+AGG | 0.577227 | 2_4:-62441006 | Msa0341030:CDS |
| GCATATCCCCTTCCATGCCA+TGG | 0.578330 | 2_4:+62441146 | None:intergenic |
| TAAGGGCAGAGAAGACGAGT+TGG | 0.578709 | 2_4:-62440988 | Msa0341030:CDS |
| AGACGAGTTGGTTCTGCCTG+GGG | 0.579184 | 2_4:-62440976 | Msa0341030:CDS |
| GACAGCAAGAACTGAGCTAA+GGG | 0.580972 | 2_4:-62441005 | Msa0341030:CDS |
| TCTGCAAGTCTTCGATGCTG+TGG | 0.581284 | 2_4:-62440953 | Msa0341030:CDS |
| GCTATGAAATCTAGTAAAAG+GGG | 0.597009 | 2_4:-62441125 | Msa0341030:CDS |
| GCAAGTCTTCGATGCTGTGG+AGG | 0.611353 | 2_4:-62440950 | Msa0341030:CDS |
| CTCCACCGTCCTTGACAGGA+TGG | 0.613835 | 2_4:-62441090 | Msa0341030:intron |
| CATGACCATCCTGTCAAGGA+CGG | 0.626465 | 2_4:+62441085 | None:intergenic |
| CATGCATGACCATCCTGTCA+AGG | 0.634099 | 2_4:+62441081 | None:intergenic |
| GACCATCCTGTCAAGGACGG+TGG | 0.653998 | 2_4:+62441088 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATGATATAACATTATTTAA+GGG | + | chr2_4:62441232-62441251 | None:intergenic | 10.0% |
| !! | TTATGATATAACATTATTTA+AGG | + | chr2_4:62441233-62441252 | None:intergenic | 10.0% |
| !! | AAATTATGATATAACATTAA+GGG | + | chr2_4:62441296-62441315 | None:intergenic | 10.0% |
| !! | AAAATTATGATATAACATTA+AGG | + | chr2_4:62441297-62441316 | None:intergenic | 10.0% |
| !! | TATGATATAACATTATTTAA+GGG | + | chr2_4:62441232-62441251 | None:intergenic | 10.0% |
| !! | TTATGATATAACATTATTTA+AGG | + | chr2_4:62441233-62441252 | None:intergenic | 10.0% |
| !! | AAATTATGATATAACATTAA+GGG | + | chr2_4:62441296-62441315 | None:intergenic | 10.0% |
| !! | AAAATTATGATATAACATTA+AGG | + | chr2_4:62441297-62441316 | None:intergenic | 10.0% |
| !!! | GTTTGAAATTTAACATTCAA+TGG | - | chr2_4:62441166-62441185 | Msa0341030:intron | 20.0% |
| !!! | GTTATATCATAAGTTTTTAG+TGG | - | chr2_4:62441241-62441260 | Msa0341030:intron | 20.0% |
| !!! | GTTTGAAATTTAACATTCAA+TGG | - | chr2_4:62441166-62441185 | Msa0341030:intron | 20.0% |
| !!! | GTTATATCATAAGTTTTTAG+TGG | - | chr2_4:62441241-62441260 | Msa0341030:intron | 20.0% |
| ! | AGTTGCATACATATTAGTAA+TGG | + | chr2_4:62441340-62441359 | None:intergenic | 25.0% |
| ! | ATGCTATGAAATCTAGTAAA+AGG | - | chr2_4:62441413-62441432 | Msa0341030:intron | 25.0% |
| ! | TGCTATGAAATCTAGTAAAA+GGG | - | chr2_4:62441414-62441433 | Msa0341030:intron | 25.0% |
| ! | AGTTGCATACATATTAGTAA+TGG | + | chr2_4:62441340-62441359 | None:intergenic | 25.0% |
| ! | ATGCTATGAAATCTAGTAAA+AGG | - | chr2_4:62441413-62441432 | Msa0341030:intron | 25.0% |
| ! | TGCTATGAAATCTAGTAAAA+GGG | - | chr2_4:62441414-62441433 | Msa0341030:intron | 25.0% |
| CTTCCATATTTGTGACAAAT+GGG | + | chr2_4:62441203-62441222 | None:intergenic | 30.0% | |
| TGGTATGTTATCATGTTGAA+GGG | + | chr2_4:62441320-62441339 | None:intergenic | 30.0% | |
| ATGGTATGTTATCATGTTGA+AGG | + | chr2_4:62441321-62441340 | None:intergenic | 30.0% | |
| GCTATGAAATCTAGTAAAAG+GGG | - | chr2_4:62441415-62441434 | Msa0341030:intron | 30.0% | |
| ATATGGAAAACTAGCTGAAA+AGG | - | chr2_4:62441495-62441514 | Msa0341030:intron | 30.0% | |
| CTTCCATATTTGTGACAAAT+GGG | + | chr2_4:62441203-62441222 | None:intergenic | 30.0% | |
| TGGTATGTTATCATGTTGAA+GGG | + | chr2_4:62441320-62441339 | None:intergenic | 30.0% | |
| ATGGTATGTTATCATGTTGA+AGG | + | chr2_4:62441321-62441340 | None:intergenic | 30.0% | |
| GCTATGAAATCTAGTAAAAG+GGG | - | chr2_4:62441415-62441434 | Msa0341030:intron | 30.0% | |
| ATATGGAAAACTAGCTGAAA+AGG | - | chr2_4:62441495-62441514 | Msa0341030:intron | 30.0% | |
| CAGTTGCATCACATATATAC+TGG | - | chr2_4:62441070-62441089 | Msa0341030:intron | 35.0% | |
| TTTCCTCCAACTGAAACATT+AGG | - | chr2_4:62441115-62441134 | Msa0341030:CDS | 35.0% | |
| TTCCTCCAACTGAAACATTA+GGG | - | chr2_4:62441116-62441135 | Msa0341030:CDS | 35.0% | |
| CATATTTGTGACAAATGGGA+AGG | + | chr2_4:62441199-62441218 | None:intergenic | 35.0% | |
| CTTCCCATTTGTCACAAATA+TGG | - | chr2_4:62441197-62441216 | Msa0341030:intron | 35.0% | |
| CCTTCCATATTTGTGACAAA+TGG | + | chr2_4:62441204-62441223 | None:intergenic | 35.0% | |
| CCATTTGTCACAAATATGGA+AGG | - | chr2_4:62441201-62441220 | Msa0341030:intron | 35.0% | |
| !!! | ATAAGTTTTTAGTGGCTCAC+TGG | - | chr2_4:62441249-62441268 | Msa0341030:intron | 35.0% |
| ! | CATCAACTATTTTACAGCCA+TGG | - | chr2_4:62441377-62441396 | Msa0341030:intron | 35.0% |
| AAATCTAGTAAAAGGGGTAG+TGG | - | chr2_4:62441421-62441440 | Msa0341030:intron | 35.0% | |
| TTGCTGTCAAATAACTTGAC+AGG | + | chr2_4:62441523-62441542 | None:intergenic | 35.0% | |
| ! | CAAATGGTTCTGCTATTCTT+TGG | - | chr2_4:62441621-62441640 | Msa0341030:intron | 35.0% |
| CAGTTGCATCACATATATAC+TGG | - | chr2_4:62441070-62441089 | Msa0341030:intron | 35.0% | |
| TTTCCTCCAACTGAAACATT+AGG | - | chr2_4:62441115-62441134 | Msa0341030:CDS | 35.0% | |
| TTCCTCCAACTGAAACATTA+GGG | - | chr2_4:62441116-62441135 | Msa0341030:CDS | 35.0% | |
| CATATTTGTGACAAATGGGA+AGG | + | chr2_4:62441199-62441218 | None:intergenic | 35.0% | |
| CTTCCCATTTGTCACAAATA+TGG | - | chr2_4:62441197-62441216 | Msa0341030:intron | 35.0% | |
| CCTTCCATATTTGTGACAAA+TGG | + | chr2_4:62441204-62441223 | None:intergenic | 35.0% | |
| CCATTTGTCACAAATATGGA+AGG | - | chr2_4:62441201-62441220 | Msa0341030:intron | 35.0% | |
| !!! | ATAAGTTTTTAGTGGCTCAC+TGG | - | chr2_4:62441249-62441268 | Msa0341030:intron | 35.0% |
| ! | CATCAACTATTTTACAGCCA+TGG | - | chr2_4:62441377-62441396 | Msa0341030:intron | 35.0% |
| AAATCTAGTAAAAGGGGTAG+TGG | - | chr2_4:62441421-62441440 | Msa0341030:intron | 35.0% | |
| TTGCTGTCAAATAACTTGAC+AGG | + | chr2_4:62441523-62441542 | None:intergenic | 35.0% | |
| ! | CAAATGGTTCTGCTATTCTT+TGG | - | chr2_4:62441621-62441640 | Msa0341030:intron | 35.0% |
| ! | CTGCTAAGCATTTTGTGAAG+AGG | - | chr2_4:62440912-62440931 | Msa0341030:CDS | 40.0% |
| TAACTCAATGCTTCCAAGCA+CGG | - | chr2_4:62440995-62441014 | Msa0341030:CDS | 40.0% | |
| TCCTCCAACTGAAACATTAG+GGG | - | chr2_4:62441117-62441136 | Msa0341030:CDS | 40.0% | |
| ! | CTCACTGGTTAAACAATGGA+AGG | - | chr2_4:62441264-62441283 | Msa0341030:intron | 40.0% |
| ! | ACTATTTTACAGCCATGGCA+TGG | - | chr2_4:62441382-62441401 | Msa0341030:intron | 40.0% |
| CATGGATTCTCATGCTGATA+TGG | - | chr2_4:62441478-62441497 | Msa0341030:intron | 40.0% | |
| ! | CTGCTAAGCATTTTGTGAAG+AGG | - | chr2_4:62440912-62440931 | Msa0341030:CDS | 40.0% |
| TAACTCAATGCTTCCAAGCA+CGG | - | chr2_4:62440995-62441014 | Msa0341030:CDS | 40.0% | |
| TCCTCCAACTGAAACATTAG+GGG | - | chr2_4:62441117-62441136 | Msa0341030:CDS | 40.0% | |
| ! | CTCACTGGTTAAACAATGGA+AGG | - | chr2_4:62441264-62441283 | Msa0341030:intron | 40.0% |
| ! | ACTATTTTACAGCCATGGCA+TGG | - | chr2_4:62441382-62441401 | Msa0341030:intron | 40.0% |
| CATGGATTCTCATGCTGATA+TGG | - | chr2_4:62441478-62441497 | Msa0341030:intron | 40.0% | |
| ATGCTTCCAAGCACGGAAAA+AGG | - | chr2_4:62441002-62441021 | Msa0341030:CDS | 45.0% | |
| ! | CAAGTACCTTTTTCCGTGCT+TGG | + | chr2_4:62441011-62441030 | None:intergenic | 45.0% |
| TCCCCTAATGTTTCAGTTGG+AGG | + | chr2_4:62441121-62441140 | None:intergenic | 45.0% | |
| GCATCCCCTAATGTTTCAGT+TGG | + | chr2_4:62441124-62441143 | None:intergenic | 45.0% | |
| ! | GTGGCTCACTGGTTAAACAA+TGG | - | chr2_4:62441260-62441279 | Msa0341030:intron | 45.0% |
| ! | TTTTACAGCCATGGCATGGA+AGG | - | chr2_4:62441386-62441405 | Msa0341030:intron | 45.0% |
| TTTACAGCCATGGCATGGAA+GGG | - | chr2_4:62441387-62441406 | Msa0341030:intron | 45.0% | |
| TGACAGCAAGAACTGAGCTA+AGG | - | chr2_4:62441534-62441553 | Msa0341030:intron | 45.0% | |
| GACAGCAAGAACTGAGCTAA+GGG | - | chr2_4:62441535-62441554 | Msa0341030:intron | 45.0% | |
| ATGCTTCCAAGCACGGAAAA+AGG | - | chr2_4:62441002-62441021 | Msa0341030:CDS | 45.0% | |
| ! | CAAGTACCTTTTTCCGTGCT+TGG | + | chr2_4:62441011-62441030 | None:intergenic | 45.0% |
| TCCCCTAATGTTTCAGTTGG+AGG | + | chr2_4:62441121-62441140 | None:intergenic | 45.0% | |
| GCATCCCCTAATGTTTCAGT+TGG | + | chr2_4:62441124-62441143 | None:intergenic | 45.0% | |
| ! | GTGGCTCACTGGTTAAACAA+TGG | - | chr2_4:62441260-62441279 | Msa0341030:intron | 45.0% |
| ! | TTTTACAGCCATGGCATGGA+AGG | - | chr2_4:62441386-62441405 | Msa0341030:intron | 45.0% |
| TTTACAGCCATGGCATGGAA+GGG | - | chr2_4:62441387-62441406 | Msa0341030:intron | 45.0% | |
| TGACAGCAAGAACTGAGCTA+AGG | - | chr2_4:62441534-62441553 | Msa0341030:intron | 45.0% | |
| GACAGCAAGAACTGAGCTAA+GGG | - | chr2_4:62441535-62441554 | Msa0341030:intron | 45.0% | |
| TTACAGCCATGGCATGGAAG+GGG | - | chr2_4:62441388-62441407 | Msa0341030:intron | 50.0% | |
| CATGACCATCCTGTCAAGGA+CGG | + | chr2_4:62441458-62441477 | None:intergenic | 50.0% | |
| CATGCATGACCATCCTGTCA+AGG | + | chr2_4:62441462-62441481 | None:intergenic | 50.0% | |
| CTTGACAGGATGGTCATGCA+TGG | - | chr2_4:62441460-62441479 | Msa0341030:intron | 50.0% | |
| TAAGGGCAGAGAAGACGAGT+TGG | - | chr2_4:62441552-62441571 | Msa0341030:intron | 50.0% | |
| !! | AAGACGAGTTGGTTCTGCCT+GGG | - | chr2_4:62441563-62441582 | Msa0341030:intron | 50.0% |
| TCTGCAAGTCTTCGATGCTG+TGG | - | chr2_4:62441587-62441606 | Msa0341030:intron | 50.0% | |
| TTACAGCCATGGCATGGAAG+GGG | - | chr2_4:62441388-62441407 | Msa0341030:intron | 50.0% | |
| CATGACCATCCTGTCAAGGA+CGG | + | chr2_4:62441458-62441477 | None:intergenic | 50.0% | |
| CATGCATGACCATCCTGTCA+AGG | + | chr2_4:62441462-62441481 | None:intergenic | 50.0% | |
| CTTGACAGGATGGTCATGCA+TGG | - | chr2_4:62441460-62441479 | Msa0341030:intron | 50.0% | |
| TAAGGGCAGAGAAGACGAGT+TGG | - | chr2_4:62441552-62441571 | Msa0341030:intron | 50.0% | |
| !! | AAGACGAGTTGGTTCTGCCT+GGG | - | chr2_4:62441563-62441582 | Msa0341030:intron | 50.0% |
| TCTGCAAGTCTTCGATGCTG+TGG | - | chr2_4:62441587-62441606 | Msa0341030:intron | 50.0% | |
| GCATATCCCCTTCCATGCCA+TGG | + | chr2_4:62441397-62441416 | None:intergenic | 55.0% | |
| TCAACTCCACCGTCCTTGAC+AGG | - | chr2_4:62441446-62441465 | Msa0341030:intron | 55.0% | |
| !! | GAAGACGAGTTGGTTCTGCC+TGG | - | chr2_4:62441562-62441581 | Msa0341030:intron | 55.0% |
| !! | AGACGAGTTGGTTCTGCCTG+GGG | - | chr2_4:62441564-62441583 | Msa0341030:intron | 55.0% |
| ATCGAAGACTTGCAGACCCC+AGG | + | chr2_4:62441583-62441602 | None:intergenic | 55.0% | |
| GCAAGTCTTCGATGCTGTGG+AGG | - | chr2_4:62441590-62441609 | Msa0341030:intron | 55.0% | |
| ! | TGTGGAGGCATGCGTGCAAA+TGG | - | chr2_4:62441605-62441624 | Msa0341030:intron | 55.0% |
| GCATATCCCCTTCCATGCCA+TGG | + | chr2_4:62441397-62441416 | None:intergenic | 55.0% | |
| TCAACTCCACCGTCCTTGAC+AGG | - | chr2_4:62441446-62441465 | Msa0341030:intron | 55.0% | |
| !! | GAAGACGAGTTGGTTCTGCC+TGG | - | chr2_4:62441562-62441581 | Msa0341030:intron | 55.0% |
| !! | AGACGAGTTGGTTCTGCCTG+GGG | - | chr2_4:62441564-62441583 | Msa0341030:intron | 55.0% |
| ATCGAAGACTTGCAGACCCC+AGG | + | chr2_4:62441583-62441602 | None:intergenic | 55.0% | |
| GCAAGTCTTCGATGCTGTGG+AGG | - | chr2_4:62441590-62441609 | Msa0341030:intron | 55.0% | |
| ! | TGTGGAGGCATGCGTGCAAA+TGG | - | chr2_4:62441605-62441624 | Msa0341030:intron | 55.0% |
| CTCCACCGTCCTTGACAGGA+TGG | - | chr2_4:62441450-62441469 | Msa0341030:intron | 60.0% | |
| GACCATCCTGTCAAGGACGG+TGG | + | chr2_4:62441455-62441474 | None:intergenic | 60.0% | |
| CTCCACCGTCCTTGACAGGA+TGG | - | chr2_4:62441450-62441469 | Msa0341030:intron | 60.0% | |
| GACCATCCTGTCAAGGACGG+TGG | + | chr2_4:62441455-62441474 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 62440898 | 62441664 | 62440898 | ID=Msa0341030;Name=Msa0341030 |
| chr2_4 | mRNA | 62440898 | 62441664 | 62440898 | ID=Msa0341030-mRNA-1;Parent=Msa0341030;Name=Msa0341030-mRNA-1;_AED=0.46;_eAED=0.47;_QI=0|0|0|1|1|1|3|0|79 |
| chr2_4 | exon | 62441659 | 62441664 | 62441659 | ID=Msa0341030-mRNA-1:exon:19895;Parent=Msa0341030-mRNA-1 |
| chr2_4 | exon | 62441091 | 62441168 | 62441091 | ID=Msa0341030-mRNA-1:exon:19894;Parent=Msa0341030-mRNA-1 |
| chr2_4 | exon | 62440898 | 62441053 | 62440898 | ID=Msa0341030-mRNA-1:exon:19893;Parent=Msa0341030-mRNA-1 |
| chr2_4 | CDS | 62441659 | 62441664 | 62441659 | ID=Msa0341030-mRNA-1:cds;Parent=Msa0341030-mRNA-1 |
| chr2_4 | CDS | 62441091 | 62441168 | 62441091 | ID=Msa0341030-mRNA-1:cds;Parent=Msa0341030-mRNA-1 |
| chr2_4 | CDS | 62440898 | 62441053 | 62440898 | ID=Msa0341030-mRNA-1:cds;Parent=Msa0341030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
