AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1402420

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1402420 MtrunA17_Chr7g0268331 99.667 600 2 0 1 600 1 600 0.0 1245
Msa1402420 MtrunA17_Chr1g0175921 83.500 600 89 4 1 599 1 591 0.0 982
Msa1402420 MtrunA17_Chr1g0176001 82.851 449 72 3 152 599 57 501 0.0 735
Msa1402420 MtrunA17_Chr1g0175941 78.396 449 63 4 152 599 375 790 0.0 686
Msa1402420 MtrunA17_Chr5g0408891 27.751 418 206 11 223 595 24 390 1.12e-35 138
Msa1402420 MtrunA17_Chr6g0484571 29.517 393 191 11 249 595 59 411 1.46e-34 136
Msa1402420 MtrunA17_Chr8g0390751 29.243 383 200 13 241 591 47 390 3.35e-31 125
Msa1402420 MtrunA17_Chr1g0148921 34.615 234 116 8 250 477 175 377 4.75e-27 116
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1402420 AT3G58580.1 76.628 599 131 4 1 593 1 596 0.0 940
Msa1402420 AT3G58560.1 77.295 599 123 6 1 593 1 592 0.0 921
Msa1402420 AT3G18500.3 30.673 401 208 14 222 591 82 443 1.36e-38 148
Msa1402420 AT3G18500.4 30.402 398 209 14 222 591 82 439 7.29e-38 146
Msa1402420 AT3G18500.2 30.250 400 210 14 222 591 82 442 9.78e-38 145
Msa1402420 AT1G31500.2 28.643 398 209 13 220 591 5 353 9.03e-33 129
Msa1402420 AT1G31500.5 28.502 414 214 14 211 591 14 378 1.01e-32 130
Msa1402420 AT1G31500.1 28.643 398 209 13 220 591 35 383 1.08e-32 130
Msa1402420 AT1G73875.1 29.124 388 189 12 250 591 100 447 1.38e-31 128
Msa1402420 AT1G31500.7 28.686 373 195 11 244 591 91 417 8.73e-31 125
Msa1402420 AT1G31500.4 28.686 373 195 11 244 591 86 412 9.81e-31 125
Msa1402420 AT3G18500.1 27.250 400 200 12 222 591 82 420 1.40e-28 119
Msa1402420 AT5G11350.5 32.258 248 125 8 244 479 17 233 3.66e-27 116
Msa1402420 AT5G11350.2 32.510 243 121 8 247 477 180 391 2.08e-26 115
Msa1402420 AT5G11350.1 32.510 243 121 8 247 477 180 391 2.10e-26 115
Msa1402420 AT5G11350.4 32.510 243 121 8 247 477 181 392 2.18e-26 114
Msa1402420 AT5G11350.3 32.510 243 121 8 247 477 180 391 2.52e-26 114
Msa1402420 AT1G31500.3 30.070 286 149 10 211 464 14 280 2.07e-25 106
Msa1402420 AT1G31500.6 30.370 270 144 9 220 464 35 285 2.87e-25 106
Msa1402420 AT1G31500.8 30.204 245 131 7 244 464 86 314 3.06e-23 101
Msa1402420 AT1G73875.2 30.638 235 126 7 250 477 100 304 2.59e-21 97.1
Msa1402420 AT1G73875.3 28.800 250 124 7 386 591 30 269 1.69e-15 77.8

Find 205 sgRNAs with CRISPR-Local

Find 480 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGATCTAATTGGGGATTTC+AGG 0.147453 tig0022876:-29792 None:intergenic
AGGTGGCTTTAAATTGAATT+AGG 0.157592 tig0022876:+29816 Msa1402420:five_prime_UTR
AATGAGGAGGAGGAGGTATT+TGG 0.159470 tig0022876:+32139 Msa1402420:CDS
CTACAACACACTCAAATTTA+AGG 0.168448 tig0022876:-32351 None:intergenic
TTTGGGAGATTTAATAATTC+TGG 0.174460 tig0022876:+32157 Msa1402420:CDS
AAGATTATCACTGCAATTAT+TGG 0.186852 tig0022876:-36351 None:intergenic
AAGCCACCTTTGGATCTAAT+TGG 0.192969 tig0022876:-29802 None:intergenic
GGAGTCATTATTAGAGTTAT+TGG 0.226274 tig0022876:+35372 Msa1402420:CDS
CCTTCTGATATTCCCATTGT+AGG 0.231586 tig0022876:+30024 Msa1402420:CDS
GAGGAAAAGGGATCGAAATT+AGG 0.239499 tig0022876:-29671 None:intergenic
GATTTCAGGGAAATTGAAAT+TGG 0.253694 tig0022876:-29778 None:intergenic
AAATGTCCACCAAGATTTAA+AGG 0.284302 tig0022876:+34564 Msa1402420:CDS
ATGAGGAGGAGGAGGTATTT+GGG 0.299523 tig0022876:+32140 Msa1402420:CDS
TCGGATTGAGACTGTGAAAA+AGG 0.313107 tig0022876:-29743 None:intergenic
GCAAGTGCAGTTAATGAAAA+TGG 0.313367 tig0022876:+32115 Msa1402420:CDS
GTTTGTTAGAGAGATAAAAT+TGG 0.318259 tig0022876:-29710 None:intergenic
CTTCTGAGTGGTTGGAATCA+TGG 0.327166 tig0022876:-33831 None:intergenic
CTAGTGACATTTGTAAATAA+AGG 0.328867 tig0022876:-35212 None:intergenic
GGTGGCTTTAAATTGAATTA+GGG 0.330159 tig0022876:+29817 Msa1402420:five_prime_UTR
TGGACTGCAATGGTAACTTT+TGG 0.330168 tig0022876:-32041 None:intergenic
GCTTGACATCCTTTAAATCT+TGG 0.334591 tig0022876:-34573 None:intergenic
AGATTTAATAATTCTGGGTC+TGG 0.339393 tig0022876:+32163 Msa1402420:CDS
AGCCACCTTTGGATCTAATT+GGG 0.339703 tig0022876:-29801 None:intergenic
TAGGTGCACACTCTCTTAAA+AGG 0.339853 tig0022876:+34683 Msa1402420:intron
TGGAGATTTCAATTCAGTTC+CGG 0.343245 tig0022876:+34751 Msa1402420:CDS
CTGGACAAACATGGCTATTA+CGG 0.344514 tig0022876:+33501 Msa1402420:CDS
CAGTGATAATCTTCACAGTT+AGG 0.345696 tig0022876:+36361 Msa1402420:three_prime_UTR
AGGAAAAGGGATCGAAATTA+GGG 0.346891 tig0022876:-29670 None:intergenic
TCCGAATCCGCTCCATTAGA+TGG 0.349193 tig0022876:+30111 Msa1402420:CDS
GCGATGACTCTTAACTAATA+AGG 0.351948 tig0022876:+35498 Msa1402420:exon
ATTCAATTTAAAGCCACCTT+TGG 0.357954 tig0022876:-29812 None:intergenic
ATTGTGCGGCTGGTGAGCTT+AGG 0.360343 tig0022876:+36316 Msa1402420:three_prime_UTR
ACCATCTAATGGAGCGGATT+CGG 0.363952 tig0022876:-30112 None:intergenic
TAGCCATGTTTGTCCAGTTC+AGG 0.369828 tig0022876:-33495 None:intergenic
TCGTGTACAGAGTGATAAAA+AGG 0.370097 tig0022876:+31940 Msa1402420:CDS
TGCCTTGAATCGGCTGGTTA+AGG 0.377237 tig0022876:+33859 Msa1402420:CDS
TTAGAGAGAGAAAGAGGAAA+AGG 0.381446 tig0022876:-29684 None:intergenic
GGTGGTTTCAGCGGATTCAT+TGG 0.381761 tig0022876:+35345 Msa1402420:intron
GGGTATTGAGGTGAAGTAAA+TGG 0.382513 tig0022876:+29867 Msa1402420:five_prime_UTR
GGAGATTTCAATTCAGTTCC+GGG 0.387669 tig0022876:+34752 Msa1402420:CDS
TTTCGTTGTGAAACAGTTGT+AGG 0.388186 tig0022876:-32256 None:intergenic
TATTGGATGAGGAGAGTTTG+AGG 0.388876 tig0022876:+35389 Msa1402420:CDS
TTGGGAGATTTAATAATTCT+GGG 0.388899 tig0022876:+32158 Msa1402420:CDS
TTTGTTAGAGAGATAAAATT+GGG 0.389438 tig0022876:-29709 None:intergenic
AGTGGGTCAACTGCTAAATC+AGG 0.392923 tig0022876:-34916 None:intergenic
TTGAATTAGGGTTTGAATTG+AGG 0.393535 tig0022876:+29829 Msa1402420:five_prime_UTR
AATAAGGAAATAAATAGATT+GGG 0.398621 tig0022876:-36213 None:intergenic
ATATGATCTGAGGACCATTC+AGG 0.399975 tig0022876:-35433 None:intergenic
GATACAAAGCAGATCATTGC+AGG 0.400609 tig0022876:-36122 None:intergenic
TAATAAGGAAATAAATAGAT+TGG 0.400635 tig0022876:-36214 None:intergenic
TACCTTAACCAGCCGATTCA+AGG 0.403199 tig0022876:-33861 None:intergenic
TTTGCAAGAACGGTTGGTCT+TGG 0.403773 tig0022876:+35146 Msa1402420:CDS
GCCCGTCATGGGCTCTATCC+TGG 0.406908 tig0022876:+32590 Msa1402420:CDS
AAATAAATAGATTGGGGAGG+GGG 0.414603 tig0022876:-36206 None:intergenic
TGTTGACGCGATGGGTAGTT+TGG 0.415932 tig0022876:+32471 Msa1402420:CDS
GGCAACATAAATACAATTGA+TGG 0.418297 tig0022876:+33643 Msa1402420:CDS
TGCAATGTGGCCTGCTCGGA+TGG 0.419245 tig0022876:-31983 None:intergenic
AACGAAATGGCGGTGAAACT+TGG 0.428590 tig0022876:+32272 Msa1402420:CDS
GTTACCATTGATTGTTGTTG+TGG 0.429498 tig0022876:+29940 Msa1402420:five_prime_UTR
TCCTCATGCACTTCTTGCAA+TGG 0.430073 tig0022876:+34873 Msa1402420:CDS
GGATCTAATTGGGGATTTCA+GGG 0.431846 tig0022876:-29791 None:intergenic
CAAACACTATACTAACTTCC+CGG 0.433877 tig0022876:+32407 Msa1402420:CDS
GTGGGTTCACAGGTATATAA+TGG 0.434589 tig0022876:+33622 Msa1402420:intron
AAACTACCCATCGCGTCAAC+AGG 0.434791 tig0022876:-32469 None:intergenic
ATTAGTTAAGAGTCATCGCC+TGG 0.439175 tig0022876:-35494 None:intergenic
ATTATTAGAGTTATTGGATG+AGG 0.444886 tig0022876:+35378 Msa1402420:CDS
TTCAGCGGATTCATTGGTTG+TGG 0.450991 tig0022876:+35351 Msa1402420:intron
TCTAGTGCTAACCTGACAAA+TGG 0.453693 tig0022876:+32217 Msa1402420:CDS
TAGAGAGAGAAAGAGGAAAA+GGG 0.463780 tig0022876:-29683 None:intergenic
TTACCATTGATTGTTGTTGT+GGG 0.464533 tig0022876:+29941 Msa1402420:five_prime_UTR
GGCCGGCGTAAGAGCACATA+AGG 0.465576 tig0022876:-30060 None:intergenic
GATTTAATAATTCTGGGTCT+GGG 0.467753 tig0022876:+32164 Msa1402420:CDS
AAGCTCACCAGCCGCACAAT+CGG 0.469040 tig0022876:-36313 None:intergenic
TCGGTTGTAACGGTCTTGTC+AGG 0.471009 tig0022876:-30081 None:intergenic
CTCCTGGAGACAAATAATAT+CGG 0.471409 tig0022876:-32659 None:intergenic
TTGTGCGGCTGGTGAGCTTA+GGG 0.471620 tig0022876:+36317 Msa1402420:three_prime_UTR
CCTCATGCACTTCTTGCAAT+GGG 0.471780 tig0022876:+34874 Msa1402420:CDS
AGAAGAAAATTGCCTTGAAT+CGG 0.472541 tig0022876:+33849 Msa1402420:CDS
CAGTTGCAGACCCATTTGTC+AGG 0.474230 tig0022876:-32228 None:intergenic
TTTCTCAGGTATCTCCGTGT+GGG 0.475767 tig0022876:+36095 Msa1402420:three_prime_UTR
AAATTGGATGAGAAACAAAT+CGG 0.476598 tig0022876:-29762 None:intergenic
GTTTGAATTGAGGTGATTCA+AGG 0.478348 tig0022876:+29839 Msa1402420:five_prime_UTR
GACGGGCGTATAACATCATC+AGG 0.479081 tig0022876:+32499 Msa1402420:CDS
TGACATCCTTTAAATCTTGG+TGG 0.480679 tig0022876:-34570 None:intergenic
GAGAAGCAATCAAACCTTCC+CGG 0.480953 tig0022876:-34770 None:intergenic
TGCCGATATTATTTGTCTCC+AGG 0.483895 tig0022876:+32657 Msa1402420:CDS
CTGCTAAATCAGGGTGGGAT+GGG 0.485135 tig0022876:-34906 None:intergenic
CAGTGCAGACATTCCAATGC+TGG 0.487912 tig0022876:+34724 Msa1402420:CDS
AATCAGCCTGTTGATAATCC+AGG 0.488431 tig0022876:+34014 Msa1402420:CDS
GAAAATTGCCTTGAATCGGC+TGG 0.488959 tig0022876:+33853 Msa1402420:CDS
GGCTGGTGAGCTTAGGGCAT+TGG 0.488963 tig0022876:+36323 Msa1402420:three_prime_UTR
GCACACTCTCTTAAAAGGAT+TGG 0.489063 tig0022876:+34688 Msa1402420:CDS
TTATTCTTCGTTTGCAAGAA+CGG 0.495585 tig0022876:+35136 Msa1402420:CDS
GGTATCAGTTGGCGAGGGAT+AGG 0.496333 tig0022876:-32448 None:intergenic
CATTGGAATGTCTGCACTGA+CGG 0.498702 tig0022876:-34720 None:intergenic
AAATCTCCACAAACCAGCAT+TGG 0.498711 tig0022876:-34737 None:intergenic
ACAACTGTTTCACAACGAAA+TGG 0.498723 tig0022876:+32259 Msa1402420:CDS
CGAGGGATAGGTGAGGGAGC+TGG 0.500702 tig0022876:-32436 None:intergenic
TCTTCGTTTGCAAGAACGGT+TGG 0.503811 tig0022876:+35140 Msa1402420:CDS
TAACCCACAACAACAATCAA+TGG 0.505101 tig0022876:-29944 None:intergenic
GACATTCCAATGCTGGTTTG+TGG 0.508800 tig0022876:+34731 Msa1402420:CDS
GACCAATGTCATCAGCTGAT+GGG 0.510124 tig0022876:-32324 None:intergenic
TTCAAGGCTGGCGGGTATTG+AGG 0.514828 tig0022876:+29855 Msa1402420:five_prime_UTR
GCAGTGCCTAGGTTGTCTTA+AGG 0.519028 tig0022876:+32003 Msa1402420:CDS
GAATTGAGGTGATTCAAGGC+TGG 0.520837 tig0022876:+29843 Msa1402420:five_prime_UTR
TATACATTACCAGTGGCAAC+TGG 0.522618 tig0022876:-34972 None:intergenic
GTGAGCTCACAGCCTACAAT+GGG 0.524072 tig0022876:-30036 None:intergenic
TATACAATTACTGCCCGTCA+TGG 0.524289 tig0022876:+32578 Msa1402420:CDS
ACTGATACCTGTTGACGCGA+TGG 0.527680 tig0022876:+32462 Msa1402420:CDS
GGAGACATCGTCGGTTGTAA+CGG 0.527964 tig0022876:-30091 None:intergenic
GCACTGCAATGTGGCCTGCT+CGG 0.528996 tig0022876:-31987 None:intergenic
CTTGCAGGTTGAGTTTAACA+AGG 0.529137 tig0022876:+33787 Msa1402420:intron
CAGCACTACCTTCTCCTGAA+TGG 0.529840 tig0022876:+35419 Msa1402420:CDS
ATTTAAAGGATGTCAAGCTC+TGG 0.530791 tig0022876:+34578 Msa1402420:CDS
AGAAGCAGACGAGGATAAGC+TGG 0.530804 tig0022876:-32197 None:intergenic
CGCGATGGGTAGTTTGGATG+TGG 0.531226 tig0022876:+32477 Msa1402420:CDS
TGAGCAGCATAAGCGGAGAA+TGG 0.533821 tig0022876:+35172 Msa1402420:CDS
GTGAGGGAGCTGGAATGACC+CGG 0.536094 tig0022876:-32426 None:intergenic
GCCAGGATAGAGCCCATGAC+GGG 0.537314 tig0022876:-32591 None:intergenic
TTGTAACGGTCTTGTCAGGC+CGG 0.537429 tig0022876:-30077 None:intergenic
GTAATTGTATAGATCATTTG+AGG 0.537961 tig0022876:-32566 None:intergenic
AAATGGAAATGAGGAGGAGG+AGG 0.539258 tig0022876:+32132 Msa1402420:CDS
ACTGCTAAATCAGGGTGGGA+TGG 0.540652 tig0022876:-34907 None:intergenic
CTGTTGATAATCCAGGGAAA+AGG 0.543538 tig0022876:+34021 Msa1402420:CDS
TGAGGTGATTCAAGGCTGGC+GGG 0.544966 tig0022876:+29847 Msa1402420:five_prime_UTR
CGCACAATCGGACTGGCTTG+AGG 0.547338 tig0022876:-36301 None:intergenic
ATTGATTCACCAGTTGCCAC+TGG 0.547488 tig0022876:+34963 Msa1402420:CDS
GGAAATAAATAGATTGGGGA+GGG 0.548000 tig0022876:-36208 None:intergenic
TGACCAATGTCATCAGCTGA+TGG 0.548194 tig0022876:-32325 None:intergenic
TGGGTAGTTTGGATGTGGAC+GGG 0.550062 tig0022876:+32482 Msa1402420:CDS
GCCACCTTTGGATCTAATTG+GGG 0.550418 tig0022876:-29800 None:intergenic
CATGCATCTGAGAAACACTT+TGG 0.550915 tig0022876:-32061 None:intergenic
CGTGAGCTCACAGCCTACAA+TGG 0.553158 tig0022876:-30037 None:intergenic
CTAGTGCTAACCTGACAAAT+GGG 0.553578 tig0022876:+32218 Msa1402420:CDS
CATGTGAGAATCTGTCTCTA+CGG 0.556492 tig0022876:-33681 None:intergenic
TAGTGTGCATCCATCCGAGC+AGG 0.557019 tig0022876:+31973 Msa1402420:CDS
AATCGGACTGGCTTGAGGAT+GGG 0.558348 tig0022876:-36296 None:intergenic
ATGGGTAGTTTGGATGTGGA+CGG 0.558679 tig0022876:+32481 Msa1402420:CDS
ATACAATTACTGCCCGTCAT+GGG 0.561058 tig0022876:+32579 Msa1402420:CDS
CTGATACCTGTTGACGCGAT+GGG 0.562086 tig0022876:+32463 Msa1402420:CDS
CTCACATGTGAAGAAATATG+AGG 0.563371 tig0022876:+33696 Msa1402420:CDS
GGTGAAACTTGGTTTGAAGT+TGG 0.567394 tig0022876:+32283 Msa1402420:CDS
TGAAAATGGAAATGAGGAGG+AGG 0.570048 tig0022876:+32129 Msa1402420:CDS
AGTTATTGTTGTAAAAGTAG+TGG 0.576538 tig0022876:+36053 Msa1402420:three_prime_UTR
CTCAAGCCAGTCCGATTGTG+CGG 0.576870 tig0022876:+36302 Msa1402420:three_prime_UTR
ATAAGGAAATAAATAGATTG+GGG 0.577435 tig0022876:-36212 None:intergenic
ACCAATGTCATCAGCTGATG+GGG 0.581807 tig0022876:-32323 None:intergenic
AACTTGTTACGAGAAATAGT+TGG 0.582561 tig0022876:+32628 Msa1402420:CDS
ATCAGCCTGTTGATAATCCA+GGG 0.584400 tig0022876:+34015 Msa1402420:CDS
GAGAAGGAGGCATATCAGTA+AGG 0.585606 tig0022876:-36180 None:intergenic
TGCACTTCTTGCAATGGGCA+AGG 0.587724 tig0022876:+34879 Msa1402420:CDS
AAATCCCCAATTAGATCCAA+AGG 0.589097 tig0022876:+29796 Msa1402420:five_prime_UTR
TTCTCAGGTATCTCCGTGTG+GGG 0.589777 tig0022876:+36096 Msa1402420:three_prime_UTR
TCTGAGGACCATTCAGGAGA+AGG 0.589944 tig0022876:-35427 None:intergenic
AGTTAATGAAAATGGAAATG+AGG 0.592339 tig0022876:+32123 Msa1402420:CDS
GCAGAGACAAAACTTACTGT+GGG 0.595469 tig0022876:+32379 Msa1402420:CDS
ATTTCAATTCAGTTCCGGGA+AGG 0.597344 tig0022876:+34756 Msa1402420:CDS
TCGCGTCAACAGGTATCAGT+TGG 0.601341 tig0022876:-32459 None:intergenic
CAAAGTGTTTCTCAGATGCA+TGG 0.604942 tig0022876:+32062 Msa1402420:CDS
TCAACAGGTATCAGTTGGCG+AGG 0.605110 tig0022876:-32454 None:intergenic
CAGCACGGTCATGTAAGACT+CGG 0.606412 tig0022876:-32093 None:intergenic
TTGAGGTGATTCAAGGCTGG+CGG 0.606912 tig0022876:+29846 Msa1402420:five_prime_UTR
GAAATAAATAGATTGGGGAG+GGG 0.608041 tig0022876:-36207 None:intergenic
GTCAACTGCTAAATCAGGGT+GGG 0.613176 tig0022876:-34911 None:intergenic
AGAAACACTTTGGACTGCAA+TGG 0.617064 tig0022876:-32051 None:intergenic
GGCCAGGATAGAGCCCATGA+CGG 0.617889 tig0022876:-32592 None:intergenic
CATTAACTGCACTTGCAGCA+CGG 0.618577 tig0022876:-32108 None:intergenic
ACCCCATCAGCTGATGACAT+TGG 0.619345 tig0022876:+32322 Msa1402420:CDS
CCCATTGCAAGAAGTGCATG+AGG 0.620810 tig0022876:-34874 None:intergenic
AGGAAATAAATAGATTGGGG+AGG 0.622708 tig0022876:-36209 None:intergenic
TTGGATATGAGCAGCATAAG+CGG 0.622823 tig0022876:+35165 Msa1402420:CDS
AAACACTATACTAACTTCCC+GGG 0.624299 tig0022876:+32408 Msa1402420:CDS
CAGGCCACATTGCAGTGCCT+AGG 0.625041 tig0022876:+31992 Msa1402420:CDS
CCTACAATGGGAATATCAGA+AGG 0.629408 tig0022876:-30024 None:intergenic
GCTCCTGAACTGGACAAACA+TGG 0.632373 tig0022876:+33492 Msa1402420:CDS
GTGGGTCAACTGCTAAATCA+GGG 0.633003 tig0022876:-34915 None:intergenic
TGCAGAGACAAAACTTACTG+TGG 0.633922 tig0022876:+32378 Msa1402420:CDS
TAAGAGAGCTATATGATCTG+AGG 0.634178 tig0022876:-35443 None:intergenic
TTAGTTAAGAGTCATCGCCT+GGG 0.637048 tig0022876:-35493 None:intergenic
GTTAGCACTAGAAGCAGACG+AGG 0.641638 tig0022876:-32206 None:intergenic
TGAGGACGCAATATGTTGAG+TGG 0.644037 tig0022876:-34934 None:intergenic
AGTTGGCGAGGGATAGGTGA+GGG 0.644814 tig0022876:-32442 None:intergenic
GAAAAGGCAACTTCTGTGTG+TGG 0.649485 tig0022876:+34037 Msa1402420:CDS
TAATGAAAATGGAAATGAGG+AGG 0.649895 tig0022876:+32126 Msa1402420:CDS
TGAGGGAGCTGGAATGACCC+GGG 0.652558 tig0022876:-32425 None:intergenic
TCATTGCAGGGAACCCCACA+CGG 0.652629 tig0022876:-36109 None:intergenic
CGATATTATTTGTCTCCAGG+AGG 0.658215 tig0022876:+32660 Msa1402420:CDS
CACGGTCATGTAAGACTCGG+TGG 0.658480 tig0022876:-32090 None:intergenic
CAACAGGTATCAGTTGGCGA+GGG 0.661641 tig0022876:-32453 None:intergenic
GCAAAGAAGAGAGATAGATG+AGG 0.666574 tig0022876:-29596 None:intergenic
AAAATGACCATCTAATGGAG+CGG 0.667800 tig0022876:-30118 None:intergenic
ACTGTTTCACAACGAAATGG+CGG 0.672994 tig0022876:+32262 Msa1402420:CDS
TGATATCTTAGTGATGAACA+TGG 0.674615 tig0022876:-36398 None:intergenic
AGCGGATTCGGAGACATCGT+CGG 0.678564 tig0022876:-30100 None:intergenic
GAGGACGCAATATGTTGAGT+GGG 0.682277 tig0022876:-34933 None:intergenic
ATACAAAGCAGATCATTGCA+GGG 0.682797 tig0022876:-36121 None:intergenic
GGAGACAAATAATATCGGCA+CGG 0.685424 tig0022876:-32654 None:intergenic
TTATGGTGGCGGATACCAGG+CGG 0.689429 tig0022876:-29895 None:intergenic
TCCCCAATTAGATCCAAAGG+TGG 0.690240 tig0022876:+29799 Msa1402420:five_prime_UTR
GGTCAACTGCTAAATCAGGG+TGG 0.696788 tig0022876:-34912 None:intergenic
ACAACCTAGGCACTGCAATG+TGG 0.709468 tig0022876:-31996 None:intergenic
TATTGAGGTGAAGTAAATGG+CGG 0.709553 tig0022876:+29870 Msa1402420:five_prime_UTR
CAGTTGGCGAGGGATAGGTG+AGG 0.714623 tig0022876:-32443 None:intergenic
CAGAGACAAAACTTACTGTG+GGG 0.738051 tig0022876:+32380 Msa1402420:CDS
TGGTGAATCAATTTGCTGTG+AGG 0.752775 tig0022876:-34952 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTTTTTA+TGG + tig0022876:30340-30359 Msa1402420:intron 0.0%
!! AAAAAAAAAAACATAACTTA+AGG - tig0022876:30330-30349 None:intergenic 10.0%
!! AAAAACAATATAAAAACTTT+AGG - tig0022876:31483-31502 None:intergenic 10.0%
!!! TTTTAAAAGAAAAAGAAAAT+TGG - tig0022876:33239-33258 None:intergenic 10.0%
!!! AAAGTTTTCTTTATATTTTT+AGG + tig0022876:33950-33969 Msa1402420:intron 10.0%
!! AATACTAACTACAATTAATA+AGG + tig0022876:30740-30759 Msa1402420:intron 15.0%
!! ATACTAACTACAATTAATAA+GGG + tig0022876:30741-30760 Msa1402420:intron 15.0%
!!! ATTTAATTAGTGGATAAATT+TGG + tig0022876:31771-31790 Msa1402420:intron 15.0%
!! ATCAAATGATATTGTTAAAT+AGG - tig0022876:31910-31929 None:intergenic 15.0%
!! TTTAACAATATCATTTGATT+TGG + tig0022876:31911-31930 Msa1402420:intron 15.0%
!!! ATATAAATGTTATTTGTCTT+TGG + tig0022876:32684-32703 Msa1402420:intron 15.0%
!! ATTATTCAAAAGAAAATACA+TGG - tig0022876:34212-34231 None:intergenic 15.0%
!!! TTAGATTAAAACCTTTTTAT+TGG + tig0022876:34480-34499 Msa1402420:intron 15.0%
!! TATTTATATCACCAATAAAA+AGG - tig0022876:34494-34513 None:intergenic 15.0%
!!! ATTTTATATTTATTGGTTGT+GGG + tig0022876:35082-35101 Msa1402420:intron 15.0%
!!! TATTTTTATGTTTCATTTGA+TGG + tig0022876:35659-35678 Msa1402420:intron 15.0%
!!! AAAAATGCTTTAAATCAATA+AGG - tig0022876:35688-35707 None:intergenic 15.0%
!!! CATATTTTTCTATAAAACAA+AGG - tig0022876:36154-36173 None:intergenic 15.0%
!! AATAAGGAAATAAATAGATT+GGG - tig0022876:36216-36235 None:intergenic 15.0%
!! TAATAAGGAAATAAATAGAT+TGG - tig0022876:36217-36236 None:intergenic 15.0%
!! TTTGTTAGAGAGATAAAATT+GGG - tig0022876:29712-29731 None:intergenic 20.0%
!! CATAAAAATTGCTTGAATTA+CGG + tig0022876:29913-29932 Msa1402420:five_prime_UTR 20.0%
!! TTAAGTTATTTATCCAAACA+GGG - tig0022876:30192-30211 None:intergenic 20.0%
!! ATTAAGTTATTTATCCAAAC+AGG - tig0022876:30193-30212 None:intergenic 20.0%
!! ATATAAGCTATAAGAAGATA+TGG + tig0022876:30258-30277 Msa1402420:intron 20.0%
!! AAAAAACATAACTTAAGGTA+AGG - tig0022876:30325-30344 None:intergenic 20.0%
!!! ATTTTGAATTTTGATGACTT+TGG + tig0022876:30392-30411 Msa1402420:intron 20.0%
!!! TTTTGAATTTTGATGACTTT+GGG + tig0022876:30393-30412 Msa1402420:intron 20.0%
!! AAAACAAGATCAATAAAATG+GGG - tig0022876:30997-31016 None:intergenic 20.0%
!! CAAAACAAGATCAATAAAAT+GGG - tig0022876:30998-31017 None:intergenic 20.0%
!! ACAAAACAAGATCAATAAAA+TGG - tig0022876:30999-31018 None:intergenic 20.0%
!! TAACAAAATATAGATTACAC+AGG - tig0022876:31094-31113 None:intergenic 20.0%
!! GTTTATGGCTAAAATTTAAA+AGG - tig0022876:31359-31378 None:intergenic 20.0%
!! ATTATACTACAAAATCAGTA+TGG + tig0022876:31603-31622 Msa1402420:intron 20.0%
!! TTATACTACAAAATCAGTAT+GGG + tig0022876:31604-31623 Msa1402420:intron 20.0%
!! TCGATAATTATTGAAGATTA+TGG + tig0022876:31713-31732 Msa1402420:intron 20.0%
!! ATCAACAGGAAAATTATAAA+AGG - tig0022876:31858-31877 None:intergenic 20.0%
!! ATCTTATTCAAGATATTTCT+GGG + tig0022876:32755-32774 Msa1402420:intron 20.0%
!! TTATATTAATGTATTTACGG+TGG + tig0022876:33603-33622 Msa1402420:intron 20.0%
!! TATATTAATGTATTTACGGT+GGG + tig0022876:33604-33623 Msa1402420:intron 20.0%
!!! ATTAATTTACTACCCTTTTT+AGG + tig0022876:34664-34683 Msa1402420:intron 20.0%
!!! TATCAGAAATCTGTTTTTAA+AGG + tig0022876:34825-34844 Msa1402420:intron 20.0%
!!! TAATATTATGTACTTTTTCC+AGG + tig0022876:35017-35036 Msa1402420:intron 20.0%
!! CAACCAATAAATATAAAATC+AGG - tig0022876:35081-35100 None:intergenic 20.0%
!!! GATTTTATATTTATTGGTTG+TGG + tig0022876:35081-35100 Msa1402420:intron 20.0%
!!! CTTGATTATATATTTTACAC+AGG + tig0022876:35251-35270 Msa1402420:CDS 20.0%
!!! ATTTAAAGCATTTTTGTACA+TGG + tig0022876:35693-35712 Msa1402420:intron 20.0%
!!! ATTTTTCTATAAAACAAAGG+TGG - tig0022876:36151-36170 None:intergenic 20.0%
!! ATAAGGAAATAAATAGATTG+GGG - tig0022876:36215-36234 None:intergenic 20.0%
!!! GAAGAAATTTTCAGTTAATA+AGG - tig0022876:36232-36251 None:intergenic 20.0%
!! GTTTGTTAGAGAGATAAAAT+TGG - tig0022876:29713-29732 None:intergenic 25.0%
! AAATTGGATGAGAAACAAAT+CGG - tig0022876:29765-29784 None:intergenic 25.0%
!! AATTCAAGCAATTTTTATGG+TGG - tig0022876:29912-29931 None:intergenic 25.0%
!! CGTAATTCAAGCAATTTTTA+TGG - tig0022876:29915-29934 None:intergenic 25.0%
!!! AACAATTATTTTGAGACAGA+GGG - tig0022876:30608-30627 None:intergenic 25.0%
!!! AAACAATTATTTTGAGACAG+AGG - tig0022876:30609-30628 None:intergenic 25.0%
! TGTTTCAACAAACATATTGA+CGG - tig0022876:30946-30965 None:intergenic 25.0%
! AAACAAGATCAATAAAATGG+GGG - tig0022876:30996-31015 None:intergenic 25.0%
!!! TTATAACTGTCGTTTTTTGA+TGG + tig0022876:31549-31568 Msa1402420:intron 25.0%
! TATACTACAAAATCAGTATG+GGG + tig0022876:31605-31624 Msa1402420:intron 25.0%
! TATTGAAGATTATGGCATTA+TGG + tig0022876:31721-31740 Msa1402420:intron 25.0%
! ATTGAAGATTATGGCATTAT+GGG + tig0022876:31722-31741 Msa1402420:intron 25.0%
! TGTTGCAGAAATTTAATTAG+TGG + tig0022876:31761-31780 Msa1402420:intron 25.0%
!!! AAAGGTATTCTAGATCAAAT+TGG - tig0022876:31840-31859 None:intergenic 25.0%
!! AACTTTTATATCAGATCAAC+AGG - tig0022876:31872-31891 None:intergenic 25.0%
! AGTTAATGAAAATGGAAATG+AGG + tig0022876:32123-32142 Msa1402420:CDS 25.0%
! TTTGGGAGATTTAATAATTC+TGG + tig0022876:32157-32176 Msa1402420:CDS 25.0%
! TTGGGAGATTTAATAATTCT+GGG + tig0022876:32158-32177 Msa1402420:CDS 25.0%
! GTAATTGTATAGATCATTTG+AGG - tig0022876:32569-32588 None:intergenic 25.0%
! AATAACATTTATATACCTCC+TGG - tig0022876:32678-32697 None:intergenic 25.0%
! CATCTTATTCAAGATATTTC+TGG + tig0022876:32754-32773 Msa1402420:intron 25.0%
! AGTGTATGTTAGACAAAATA+AGG + tig0022876:32850-32869 Msa1402420:intron 25.0%
! GTGTATGTTAGACAAAATAA+GGG + tig0022876:32851-32870 Msa1402420:intron 25.0%
! GTTACTTGAAAAGGATAAAT+AGG + tig0022876:32949-32968 Msa1402420:intron 25.0%
!! TTTGTTCTCATTTTGTAATC+TGG + tig0022876:33069-33088 Msa1402420:intron 25.0%
! AAAAACATCTATGTTAAGAC+TGG - tig0022876:33168-33187 None:intergenic 25.0%
!! AGTCTTAACATAGATGTTTT+TGG + tig0022876:33167-33186 Msa1402420:intron 25.0%
! AAAGAAAAAGAAAATTGGAC+AGG - tig0022876:33234-33253 None:intergenic 25.0%
! ATTCTATCACAAAATGACTA+AGG - tig0022876:33332-33351 None:intergenic 25.0%
!!! ATTGAGTTGAGTTAGATTAA+CGG - tig0022876:33367-33386 None:intergenic 25.0%
! GTTGCATCTTATATTCTAAT+AGG + tig0022876:33402-33421 Msa1402420:intron 25.0%
! AAAGAAAACTTTGTAAGTAC+AGG - tig0022876:33942-33961 None:intergenic 25.0%
! TAAGAGTAACAAATAAAAGC+AGG - tig0022876:34076-34095 None:intergenic 25.0%
!!! TGCTTTTATTTGTTACTCTT+AGG + tig0022876:34075-34094 Msa1402420:intron 25.0%
!!! TTTTATTTGTTACTCTTAGG+TGG + tig0022876:34078-34097 Msa1402420:intron 25.0%
! TACAACTAAAAACAGGAAAA+TGG - tig0022876:34189-34208 None:intergenic 25.0%
! AAATACAACATCTTCAAATG+AGG - tig0022876:34428-34447 None:intergenic 25.0%
!!! TCCATGCTTTTTTCTTTTTT+TGG + tig0022876:34456-34475 Msa1402420:intron 25.0%
! ACCAAAAAAAGAAAAAAGCA+TGG - tig0022876:34460-34479 None:intergenic 25.0%
! TGCATTCAAAATAAACACAT+CGG - tig0022876:34638-34657 None:intergenic 25.0%
!! GGTCCTGATTTTATATTTAT+TGG + tig0022876:35075-35094 Msa1402420:intron 25.0%
!!! TGTTGGTTAATTACATTTTC+AGG + tig0022876:35106-35125 Msa1402420:intron 25.0%
! CTAGTGACATTTGTAAATAA+AGG - tig0022876:35215-35234 None:intergenic 25.0%
!! AATGTCACTAGAGATTTTAT+TGG + tig0022876:35224-35243 Msa1402420:CDS 25.0%
! TCACTAAATAAAAGGCAAAT+AGG - tig0022876:35319-35338 None:intergenic 25.0%
! CCAAACATTCACTAAATAAA+AGG - tig0022876:35327-35346 None:intergenic 25.0%
!!! CCTTTTATTTAGTGAATGTT+TGG + tig0022876:35324-35343 Msa1402420:intron 25.0%
! TTTATTTAGTGAATGTTTGG+TGG + tig0022876:35327-35346 Msa1402420:intron 25.0%
! ATTATTAGAGTTATTGGATG+AGG + tig0022876:35378-35397 Msa1402420:CDS 25.0%
! ATGCGAAAATGAGATTATAT+GGG - tig0022876:35543-35562 None:intergenic 25.0%
! TATGCGAAAATGAGATTATA+TGG - tig0022876:35544-35563 None:intergenic 25.0%
!!! ATTATACGCTTTATTTGCAT+TGG + tig0022876:35573-35592 Msa1402420:intron 25.0%
!!! TATTTGCATTGGTTTTTCAA+AGG + tig0022876:35584-35603 Msa1402420:intron 25.0%
!!! ATGATACATTTTGACTCAAT+TGG - tig0022876:35763-35782 None:intergenic 25.0%
! AGTTATTGTTGTAAAAGTAG+TGG + tig0022876:36053-36072 Msa1402420:three_prime_UTR 25.0%
! AAGATTATCACTGCAATTAT+TGG - tig0022876:36354-36373 None:intergenic 25.0%
!!! TGCTATACTGATATTTTTTG+TGG + tig0022876:36430-36449 Msa1402420:three_prime_UTR 25.0%
!!! GCTATACTGATATTTTTTGT+GGG + tig0022876:36431-36450 Msa1402420:three_prime_UTR 25.0%
!!! CTATACTGATATTTTTTGTG+GGG + tig0022876:36432-36451 Msa1402420:three_prime_UTR 25.0%
GATTTCAGGGAAATTGAAAT+TGG - tig0022876:29781-29800 None:intergenic 30.0%
! ATTCAATTTAAAGCCACCTT+TGG - tig0022876:29815-29834 None:intergenic 30.0%
!! AGGTGGCTTTAAATTGAATT+AGG + tig0022876:29816-29835 Msa1402420:five_prime_UTR 30.0%
!! GGTGGCTTTAAATTGAATTA+GGG + tig0022876:29817-29836 Msa1402420:five_prime_UTR 30.0%
TTGAATTAGGGTTTGAATTG+AGG + tig0022876:29829-29848 Msa1402420:five_prime_UTR 30.0%
! TTACCATTGATTGTTGTTGT+GGG + tig0022876:29941-29960 Msa1402420:five_prime_UTR 30.0%
!!! TTCTTTAGAGTTTTTGTCGT+TGG + tig0022876:30533-30552 Msa1402420:intron 30.0%
GAAATCTCAATTCATACTGA+TGG - tig0022876:30572-30591 None:intergenic 30.0%
!! AGGGAGTATATGTTTAGTTT+TGG + tig0022876:30865-30884 Msa1402420:intron 30.0%
!!! GGGAGTATATGTTTAGTTTT+GGG + tig0022876:30866-30885 Msa1402420:intron 30.0%
!!! GTATATGTTTAGTTTTGGGT+TGG + tig0022876:30870-30889 Msa1402420:intron 30.0%
! GTTAATGCCAGTATTTTCTT+TGG + tig0022876:31026-31045 Msa1402420:intron 30.0%
TCGTTATCCAAAGAAAATAC+TGG - tig0022876:31036-31055 None:intergenic 30.0%
GCATAGAAAAGTAAAGTAGA+AGG - tig0022876:31117-31136 None:intergenic 30.0%
AGAGAAATTCTATATCCTGT+TGG - tig0022876:31383-31402 None:intergenic 30.0%
! TGAATCCTACATTTTCTGTT+AGG + tig0022876:31514-31533 Msa1402420:intron 30.0%
TCGATGTCTAAATTTCATGA+AGG - tig0022876:31697-31716 None:intergenic 30.0%
!! ACAATATCATTTGATTTGGC+AGG + tig0022876:31915-31934 Msa1402420:intron 30.0%
TAATGAAAATGGAAATGAGG+AGG + tig0022876:32126-32145 Msa1402420:CDS 30.0%
AGATTTAATAATTCTGGGTC+TGG + tig0022876:32163-32182 Msa1402420:CDS 30.0%
GATTTAATAATTCTGGGTCT+GGG + tig0022876:32164-32183 Msa1402420:CDS 30.0%
CTACAACACACTCAAATTTA+AGG - tig0022876:32354-32373 None:intergenic 30.0%
!! AACTTGTTACGAGAAATAGT+TGG + tig0022876:32628-32647 Msa1402420:CDS 30.0%
CATACACTCTTCTAACTAAT+GGG - tig0022876:32838-32857 None:intergenic 30.0%
ACATACACTCTTCTAACTAA+TGG - tig0022876:32839-32858 None:intergenic 30.0%
AGACAAAATAAGGGACTTAA+CGG + tig0022876:32860-32879 Msa1402420:intron 30.0%
TGGAAGTTAGTTACTTGAAA+AGG + tig0022876:32940-32959 Msa1402420:intron 30.0%
TGCTGTATTTCATATTGTGT+AGG + tig0022876:32998-33017 Msa1402420:intron 30.0%
!! TACTCTCTAAAACATTTGAG+AGG - tig0022876:33034-33053 None:intergenic 30.0%
TTTGTACTGTTCACAAGAAA+TGG - tig0022876:33125-33144 None:intergenic 30.0%
ATTTGTGAATGAACTCAAGT+AGG + tig0022876:33261-33280 Msa1402420:intron 30.0%
ACAAAATGACTAAGGTTAAC+TGG - tig0022876:33324-33343 None:intergenic 30.0%
!! TTGAGTTGAGTTAGATTAAC+GGG - tig0022876:33366-33385 None:intergenic 30.0%
GGCAACATAAATACAATTGA+TGG + tig0022876:33643-33662 Msa1402420:CDS 30.0%
AGAAATATGAGGTTGGAATT+TGG + tig0022876:33707-33726 Msa1402420:intron 30.0%
AGAAGAAAATTGCCTTGAAT+CGG + tig0022876:33849-33868 Msa1402420:CDS 30.0%
GAAAACATAGCTGCAATATT+TGG - tig0022876:33897-33916 None:intergenic 30.0%
TACATGGTACAACTAAAAAC+AGG - tig0022876:34196-34215 None:intergenic 30.0%
TTCTTGTGTATTGTCAGTAA+AGG + tig0022876:34269-34288 Msa1402420:intron 30.0%
AATAGAAACGAAGACTATTC+TGG + tig0022876:34303-34322 Msa1402420:intron 30.0%
AAATGTCCACCAAGATTTAA+AGG + tig0022876:34564-34583 Msa1402420:CDS 30.0%
AAAATCAGGACCAAAAATTG+AGG - tig0022876:35067-35086 None:intergenic 30.0%
TTATTCTTCGTTTGCAAGAA+CGG + tig0022876:35136-35155 Msa1402420:CDS 30.0%
GGAGTCATTATTAGAGTTAT+TGG + tig0022876:35372-35391 Msa1402420:CDS 30.0%
AAATGAGATTATATGGGAAG+AGG - tig0022876:35537-35556 None:intergenic 30.0%
AAAACAGATCTCTCCATAAA+AGG - tig0022876:35630-35649 None:intergenic 30.0%
! TTTATGGAGAGATCTGTTTT+TGG + tig0022876:35630-35649 Msa1402420:intron 30.0%
TCAGGATTTGAATTGTGAAT+TGG + tig0022876:35724-35743 Msa1402420:intron 30.0%
GATTTGAATTGTGAATTGGA+AGG + tig0022876:35728-35747 Msa1402420:intron 30.0%
TTTGACTCAATTGGAAAACT+TGG - tig0022876:35754-35773 None:intergenic 30.0%
!!! GTTTTTTTTGTATACCTGGA+TGG + tig0022876:35929-35948 Msa1402420:intron 30.0%
TTCAGTTCATTATTGATGTC+AGG + tig0022876:35960-35979 Msa1402420:intron 30.0%
!!! ATTTTTTCTTTACGTGTCAC+TGG - tig0022876:36009-36028 None:intergenic 30.0%
TGATATCTTAGTGATGAACA+TGG - tig0022876:36401-36420 None:intergenic 30.0%
AGGAAAAGGGATCGAAATTA+GGG - tig0022876:29673-29692 None:intergenic 35.0%
TAGAGAGAGAAAGAGGAAAA+GGG - tig0022876:29686-29705 None:intergenic 35.0%
TTAGAGAGAGAAAGAGGAAA+AGG - tig0022876:29687-29706 None:intergenic 35.0%
AAATCCCCAATTAGATCCAA+AGG + tig0022876:29796-29815 Msa1402420:five_prime_UTR 35.0%
GTTTGAATTGAGGTGATTCA+AGG + tig0022876:29839-29858 Msa1402420:five_prime_UTR 35.0%
TATTGAGGTGAAGTAAATGG+CGG + tig0022876:29870-29889 Msa1402420:five_prime_UTR 35.0%
! TCAAGCAATTTTTATGGTGG+CGG - tig0022876:29909-29928 None:intergenic 35.0%
! GTTACCATTGATTGTTGTTG+TGG + tig0022876:29940-29959 Msa1402420:five_prime_UTR 35.0%
TAACCCACAACAACAATCAA+TGG - tig0022876:29947-29966 None:intergenic 35.0%
!! TTGTTGTGGGTTACAGTTTT+TGG + tig0022876:29954-29973 Msa1402420:five_prime_UTR 35.0%
!! GGGTTACAGTTTTTGGATTA+CGG + tig0022876:29961-29980 Msa1402420:five_prime_UTR 35.0%
AAAATGACCATCTAATGGAG+CGG - tig0022876:30121-30140 None:intergenic 35.0%
CGCAAAAAATGACCATCTAA+TGG - tig0022876:30126-30145 None:intergenic 35.0%
!!! GTCATTTTTTGCGCTATAAG+TGG + tig0022876:30133-30152 Msa1402420:CDS 35.0%
! CAGCTTATCAGGTTTTTCTT+CGG + tig0022876:30469-30488 Msa1402420:intron 35.0%
! TTATCAGGTTTTTCTTCGGT+TGG + tig0022876:30473-30492 Msa1402420:intron 35.0%
AGGTTTGTGCACGATATTTA+AGG - tig0022876:30821-30840 None:intergenic 35.0%
CTCAACATAACAGTCGTTTA+AGG - tig0022876:30841-30860 None:intergenic 35.0%
AAACGACTGTTATGTTGAGA+CGG + tig0022876:30842-30861 Msa1402420:intron 35.0%
!!! TTTAGTTTTGGGTTGGAAGT+AGG + tig0022876:30877-30896 Msa1402420:intron 35.0%
GTTGGAAGTAGGCATAATAT+AGG + tig0022876:30888-30907 Msa1402420:intron 35.0%
CAAACATATTGACGGTGAAT+GGG - tig0022876:30938-30957 None:intergenic 35.0%
ACAAACATATTGACGGTGAA+TGG - tig0022876:30939-30958 None:intergenic 35.0%
! TTTTAGCCATAAACACCAAC+AGG + tig0022876:31365-31384 Msa1402420:intron 35.0%
! CTATATCCTGTTGGTGTTTA+TGG - tig0022876:31374-31393 None:intergenic 35.0%
CTCTTTCACTGATATCATTG+TGG + tig0022876:31399-31418 Msa1402420:intron 35.0%
ACTGATATCATTGTGGAGAA+TGG + tig0022876:31406-31425 Msa1402420:intron 35.0%
!! TTCGTGTTGGTTTGTACAAA+TGG + tig0022876:31440-31459 Msa1402420:intron 35.0%
!! TCGTGTTGGTTTGTACAAAT+GGG + tig0022876:31441-31460 Msa1402420:intron 35.0%
!! TTGGTTTGTACAAATGGGAT+TGG + tig0022876:31446-31465 Msa1402420:intron 35.0%
CCATACCTAACAGAAAATGT+AGG - tig0022876:31522-31541 None:intergenic 35.0%
! CCTACATTTTCTGTTAGGTA+TGG + tig0022876:31519-31538 Msa1402420:intron 35.0%
AATGATTCAGCATGCTTGTT+GGG + tig0022876:31651-31670 Msa1402420:intron 35.0%
TCGTGTACAGAGTGATAAAA+AGG + tig0022876:31940-31959 Msa1402420:CDS 35.0%
!!! TTTTAGCCTTAAGACAACCT+AGG - tig0022876:32012-32031 None:intergenic 35.0%
!! CAATGGTAACTTTTGGAAAC+AGG - tig0022876:32037-32056 None:intergenic 35.0%
GCAAGTGCAGTTAATGAAAA+TGG + tig0022876:32115-32134 Msa1402420:CDS 35.0%
TTTCGTTGTGAAACAGTTGT+AGG - tig0022876:32259-32278 None:intergenic 35.0%
ACAACTGTTTCACAACGAAA+TGG + tig0022876:32259-32278 Msa1402420:CDS 35.0%
CAAACACTATACTAACTTCC+CGG + tig0022876:32407-32426 Msa1402420:CDS 35.0%
AAACACTATACTAACTTCCC+GGG + tig0022876:32408-32427 Msa1402420:CDS 35.0%
!! AACAAGTTTTGTCTGCGATA+CGG - tig0022876:32616-32635 None:intergenic 35.0%
CTCCTGGAGACAAATAATAT+CGG - tig0022876:32662-32681 None:intergenic 35.0%
GACAAAATAAGGGACTTAAC+GGG + tig0022876:32861-32880 Msa1402420:intron 35.0%
ACAGGAGTTATTTAGAAGAG+TGG + tig0022876:32920-32939 Msa1402420:intron 35.0%
CATATTGTGTAGGAGAGAAA+AGG + tig0022876:33008-33027 Msa1402420:intron 35.0%
! ATGTTGCCTTTGGTATTTTG+TGG + tig0022876:33208-33227 Msa1402420:intron 35.0%
!! TCAAGTAGGTGGATTCTTTT+GGG + tig0022876:33275-33294 Msa1402420:intron 35.0%
! TGAGTTGAGTTAGATTAACG+GGG - tig0022876:33365-33384 None:intergenic 35.0%
AGATGCAACATACAAATACG+AGG - tig0022876:33391-33410 None:intergenic 35.0%
CTCACATGTGAAGAAATATG+AGG + tig0022876:33696-33715 Msa1402420:CDS 35.0%
CATGTGAAGAAATATGAGGT+TGG + tig0022876:33700-33719 Msa1402420:intron 35.0%
ATTATTGTTTGCTTGCTTGC+AGG + tig0022876:33772-33791 Msa1402420:intron 35.0%
! TTCTGAAAGTCATTGCTTCT+TGG + tig0022876:33914-33933 Msa1402420:intron 35.0%
AAGAGATAATGCTATATGCG+TGG + tig0022876:34369-34388 Msa1402420:intron 35.0%
TGACATCCTTTAAATCTTGG+TGG - tig0022876:34573-34592 None:intergenic 35.0%
GCTTGACATCCTTTAAATCT+TGG - tig0022876:34576-34595 None:intergenic 35.0%
ATTTAAAGGATGTCAAGCTC+TGG + tig0022876:34578-34597 Msa1402420:CDS 35.0%
TGGAGATTTCAATTCAGTTC+CGG + tig0022876:34751-34770 Msa1402420:CDS 35.0%
! TGGTAATGTATAGCAACACT+TGG + tig0022876:34983-35002 Msa1402420:intron 35.0%
! TGTGCTCTTTCCTCAATTTT+TGG + tig0022876:35054-35073 Msa1402420:intron 35.0%
TAAGAGAGCTATATGATCTG+AGG - tig0022876:35446-35465 None:intergenic 35.0%
GCGATGACTCTTAACTAATA+AGG + tig0022876:35498-35517 Msa1402420:exon 35.0%
! CTCACTTACCAATCCTTTTA+TGG + tig0022876:35614-35633 Msa1402420:intron 35.0%
AGATCTCTCCATAAAAGGAT+TGG - tig0022876:35625-35644 None:intergenic 35.0%
TTGTACATGGTTGTTAGATC+AGG + tig0022876:35706-35725 Msa1402420:intron 35.0%
AGCAAAAGGTTACATGATAC+TGG - tig0022876:35813-35832 None:intergenic 35.0%
!! TTTGTGTCTGTTTCTGTCTT+TGG + tig0022876:35864-35883 Msa1402420:intron 35.0%
! GTTTTGCTTTAACATCCCAT+TGG + tig0022876:35891-35910 Msa1402420:intron 35.0%
!!! GTCGGTTTTTTTTGTATACC+TGG + tig0022876:35925-35944 Msa1402420:intron 35.0%
!!! GTCAGGCTTTTGATTTTTGT+AGG + tig0022876:35977-35996 Msa1402420:intron 35.0%
GATACCTGAGAAAAAGACAA+AGG - tig0022876:36088-36107 None:intergenic 35.0%
ATACAAAGCAGATCATTGCA+GGG - tig0022876:36124-36143 None:intergenic 35.0%
AAATAAATAGATTGGGGAGG+GGG - tig0022876:36209-36228 None:intergenic 35.0%
GAAATAAATAGATTGGGGAG+GGG - tig0022876:36210-36229 None:intergenic 35.0%
GGAAATAAATAGATTGGGGA+GGG - tig0022876:36211-36230 None:intergenic 35.0%
AGGAAATAAATAGATTGGGG+AGG - tig0022876:36212-36231 None:intergenic 35.0%
CAGTGATAATCTTCACAGTT+AGG + tig0022876:36361-36380 Msa1402420:three_prime_UTR 35.0%
GCAAAGAAGAGAGATAGATG+AGG - tig0022876:29599-29618 None:intergenic 40.0%
GAGGAAAAGGGATCGAAATT+AGG - tig0022876:29674-29693 None:intergenic 40.0%
!!! TGGGTTTTAGAGAGAGAAAG+AGG - tig0022876:29693-29712 None:intergenic 40.0%
TCGGATTGAGACTGTGAAAA+AGG - tig0022876:29746-29765 None:intergenic 40.0%
GGATCTAATTGGGGATTTCA+GGG - tig0022876:29794-29813 None:intergenic 40.0%
TGGATCTAATTGGGGATTTC+AGG - tig0022876:29795-29814 None:intergenic 40.0%
AGCCACCTTTGGATCTAATT+GGG - tig0022876:29804-29823 None:intergenic 40.0%
AAGCCACCTTTGGATCTAAT+TGG - tig0022876:29805-29824 None:intergenic 40.0%
!! GGGTATTGAGGTGAAGTAAA+TGG + tig0022876:29867-29886 Msa1402420:five_prime_UTR 40.0%
CCTACAATGGGAATATCAGA+AGG - tig0022876:30027-30046 None:intergenic 40.0%
CCTTCTGATATTCCCATTGT+AGG + tig0022876:30024-30043 Msa1402420:CDS 40.0%
TCCAAACAGGGCTTAAAAGA+GGG - tig0022876:30180-30199 None:intergenic 40.0%
ATCCAAACAGGGCTTAAAAG+AGG - tig0022876:30181-30200 None:intergenic 40.0%
CCTGATAAGCTGATAGATAC+TGG - tig0022876:30461-30480 None:intergenic 40.0%
CCAGTATCTATCAGCTTATC+AGG + tig0022876:30458-30477 Msa1402420:intron 40.0%
GGCATAATATAGGTGTTCAG+CGG + tig0022876:30898-30917 Msa1402420:intron 40.0%
GCATAATATAGGTGTTCAGC+GGG + tig0022876:30899-30918 Msa1402420:intron 40.0%
CGTGCTAAGATTGTAGTTTC+TGG + tig0022876:31061-31080 Msa1402420:intron 40.0%
TATCTTCACATTCATGTCCC+AGG + tig0022876:31231-31250 Msa1402420:intron 40.0%
TACTGCAAAGGATAAGACCT+GGG - tig0022876:31251-31270 None:intergenic 40.0%
ATACTGCAAAGGATAAGACC+TGG - tig0022876:31252-31271 None:intergenic 40.0%
ATCATTGTGGAGAATGGAGA+TGG + tig0022876:31412-31431 Msa1402420:intron 40.0%
! GGAGATGGATATTTTCGTGT+TGG + tig0022876:31427-31446 Msa1402420:intron 40.0%
CAATGATTCAGCATGCTTGT+TGG + tig0022876:31650-31669 Msa1402420:intron 40.0%
!! TGGGTGACATCAACTTTTTC+TGG + tig0022876:31670-31689 Msa1402420:intron 40.0%
TGGCATTATGGGCCAAAATT+TGG + tig0022876:31733-31752 Msa1402420:intron 40.0%
GGCATTATGGGCCAAAATTT+GGG + tig0022876:31734-31753 Msa1402420:intron 40.0%
! TGGACTGCAATGGTAACTTT+TGG - tig0022876:32044-32063 None:intergenic 40.0%
AGAAACACTTTGGACTGCAA+TGG - tig0022876:32054-32073 None:intergenic 40.0%
CATGCATCTGAGAAACACTT+TGG - tig0022876:32064-32083 None:intergenic 40.0%
! CAAAGTGTTTCTCAGATGCA+TGG + tig0022876:32062-32081 Msa1402420:CDS 40.0%
TGAAAATGGAAATGAGGAGG+AGG + tig0022876:32129-32148 Msa1402420:CDS 40.0%
TCTAGTGCTAACCTGACAAA+TGG + tig0022876:32217-32236 Msa1402420:CDS 40.0%
CTAGTGCTAACCTGACAAAT+GGG + tig0022876:32218-32237 Msa1402420:CDS 40.0%
ACTGTTTCACAACGAAATGG+CGG + tig0022876:32262-32281 Msa1402420:CDS 40.0%
! GGTGAAACTTGGTTTGAAGT+TGG + tig0022876:32283-32302 Msa1402420:CDS 40.0%
TGCAGAGACAAAACTTACTG+TGG + tig0022876:32378-32397 Msa1402420:CDS 40.0%
GCAGAGACAAAACTTACTGT+GGG + tig0022876:32379-32398 Msa1402420:CDS 40.0%
CAGAGACAAAACTTACTGTG+GGG + tig0022876:32380-32399 Msa1402420:CDS 40.0%
TATACAATTACTGCCCGTCA+TGG + tig0022876:32578-32597 Msa1402420:CDS 40.0%
ATACAATTACTGCCCGTCAT+GGG + tig0022876:32579-32598 Msa1402420:CDS 40.0%
GGAGACAAATAATATCGGCA+CGG - tig0022876:32657-32676 None:intergenic 40.0%
TGCCGATATTATTTGTCTCC+AGG + tig0022876:32657-32676 Msa1402420:CDS 40.0%
CGATATTATTTGTCTCCAGG+AGG + tig0022876:32660-32679 Msa1402420:CDS 40.0%
GGGAGACTATCAATCTCATA+TGG - tig0022876:32818-32837 None:intergenic 40.0%
!! TGGTTTAGTTCTTTCCCCAT+TGG + tig0022876:33089-33108 Msa1402420:intron 40.0%
TGTGAATGAACTCAAGTAGG+TGG + tig0022876:33264-33283 Msa1402420:intron 40.0%
!! CTCAAGTAGGTGGATTCTTT+TGG + tig0022876:33274-33293 Msa1402420:intron 40.0%
! TGAATTTTTCGCTCCTGAAC+TGG + tig0022876:33482-33501 Msa1402420:CDS 40.0%
CTGGACAAACATGGCTATTA+CGG + tig0022876:33501-33520 Msa1402420:CDS 40.0%
GTGGGTTCACAGGTATATAA+TGG + tig0022876:33622-33641 Msa1402420:intron 40.0%
CATGTGAGAATCTGTCTCTA+CGG - tig0022876:33684-33703 None:intergenic 40.0%
! CTTGCAGGTTGAGTTTAACA+AGG + tig0022876:33787-33806 Msa1402420:intron 40.0%
! GCAATTTTCTTCTGAGTGGT+TGG - tig0022876:33842-33861 None:intergenic 40.0%
! CAAGGCAATTTTCTTCTGAG+TGG - tig0022876:33846-33865 None:intergenic 40.0%
!! AATCAGCCTGTTGATAATCC+AGG + tig0022876:34014-34033 Msa1402420:CDS 40.0%
!! ATCAGCCTGTTGATAATCCA+GGG + tig0022876:34015-34034 Msa1402420:CDS 40.0%
! CTTTTCCCTGGATTATCAAC+AGG - tig0022876:34023-34042 None:intergenic 40.0%
!! CTGTTGATAATCCAGGGAAA+AGG + tig0022876:34021-34040 Msa1402420:CDS 40.0%
TTGTCTACTCATGCCTTCAA+GGG + tig0022876:34103-34122 Msa1402420:intron 40.0%
CGAAGCATGACAGTAGAAAA+GGG - tig0022876:34238-34257 None:intergenic 40.0%
ACGAAGCATGACAGTAGAAA+AGG - tig0022876:34239-34258 None:intergenic 40.0%
! ACTAACTCTCATGTTGCTTG+TGG + tig0022876:34520-34539 Msa1402420:intron 40.0%
! CTAACTCTCATGTTGCTTGT+GGG + tig0022876:34521-34540 Msa1402420:intron 40.0%
! AGAGAGTGTGCACCTAAAAA+GGG - tig0022876:34679-34698 None:intergenic 40.0%
! AAGAGAGTGTGCACCTAAAA+AGG - tig0022876:34680-34699 None:intergenic 40.0%
TAGGTGCACACTCTCTTAAA+AGG + tig0022876:34683-34702 Msa1402420:intron 40.0%
GCACACTCTCTTAAAAGGAT+TGG + tig0022876:34688-34707 Msa1402420:CDS 40.0%
AAATCTCCACAAACCAGCAT+TGG - tig0022876:34740-34759 None:intergenic 40.0%
GGAGATTTCAATTCAGTTCC+GGG + tig0022876:34752-34771 Msa1402420:CDS 40.0%
ATTTCAATTCAGTTCCGGGA+AGG + tig0022876:34756-34775 Msa1402420:CDS 40.0%
!! TGGTGAATCAATTTGCTGTG+AGG - tig0022876:34955-34974 None:intergenic 40.0%
TATACATTACCAGTGGCAAC+TGG - tig0022876:34975-34994 None:intergenic 40.0%
! GTGTTGCTATACATTACCAG+TGG - tig0022876:34982-35001 None:intergenic 40.0%
! GGAAAGAGCACAATTACAGT+GGG - tig0022876:35046-35065 None:intergenic 40.0%
! AGGAAAGAGCACAATTACAG+TGG - tig0022876:35047-35066 None:intergenic 40.0%
! ATTTATTGGTTGTGGGCTGT+TGG + tig0022876:35089-35108 Msa1402420:intron 40.0%
TTGGATATGAGCAGCATAAG+CGG + tig0022876:35165-35184 Msa1402420:CDS 40.0%
! TGAATGTTTGGTGGTTTCAG+CGG + tig0022876:35336-35355 Msa1402420:intron 40.0%
TATTGGATGAGGAGAGTTTG+AGG + tig0022876:35389-35408 Msa1402420:CDS 40.0%
ATATGATCTGAGGACCATTC+AGG - tig0022876:35436-35455 None:intergenic 40.0%
TTAGTTAAGAGTCATCGCCT+GGG - tig0022876:35496-35515 None:intergenic 40.0%
ATTAGTTAAGAGTCATCGCC+TGG - tig0022876:35497-35516 None:intergenic 40.0%
TATGGGAAGAGGAGGAATAA+TGG - tig0022876:35526-35545 None:intergenic 40.0%
TGAGATTATATGGGAAGAGG+AGG - tig0022876:35534-35553 None:intergenic 40.0%
CTTTAACATCCCATTGGACA+GGG + tig0022876:35897-35916 Msa1402420:intron 40.0%
! CATGCCTTTGTCTTTTTCTC+AGG + tig0022876:36081-36100 Msa1402420:three_prime_UTR 40.0%
GATACAAAGCAGATCATTGC+AGG - tig0022876:36125-36144 None:intergenic 40.0%
TCCCCAATTAGATCCAAAGG+TGG + tig0022876:29799-29818 Msa1402420:five_prime_UTR 45.0%
GCCACCTTTGGATCTAATTG+GGG - tig0022876:29803-29822 None:intergenic 45.0%
GAATTGAGGTGATTCAAGGC+TGG + tig0022876:29843-29862 Msa1402420:five_prime_UTR 45.0%
!!! TTTTTATGGTGGCGGATACC+AGG - tig0022876:29901-29920 None:intergenic 45.0%
! ACCATCTAATGGAGCGGATT+CGG - tig0022876:30115-30134 None:intergenic 45.0%
! TCCCTCTTTTAAGCCCTGTT+TGG + tig0022876:30176-30195 Msa1402420:intron 45.0%
GACTGTTATGTTGAGACGGA+GGG + tig0022876:30846-30865 Msa1402420:intron 45.0%
TTCTCCTGTGTGTACTTCAC+TGG + tig0022876:31183-31202 Msa1402420:intron 45.0%
TTAGCCAGTGAAGTACACAC+AGG - tig0022876:31190-31209 None:intergenic 45.0%
CTGGCTAATGCAGTATTGCA+TGG + tig0022876:31202-31221 Msa1402420:intron 45.0%
TGTGCACACTGATACTGCAA+AGG - tig0022876:31263-31282 None:intergenic 45.0%
! TGCAACACTCGCCCAAATTT+TGG - tig0022876:31748-31767 None:intergenic 45.0%
CATTAACTGCACTTGCAGCA+CGG - tig0022876:32111-32130 None:intergenic 45.0%
AAATGGAAATGAGGAGGAGG+AGG + tig0022876:32132-32151 Msa1402420:CDS 45.0%
!! AATGAGGAGGAGGAGGTATT+TGG + tig0022876:32139-32158 Msa1402420:CDS 45.0%
!! ATGAGGAGGAGGAGGTATTT+GGG + tig0022876:32140-32159 Msa1402420:CDS 45.0%
AACGAAATGGCGGTGAAACT+TGG + tig0022876:32272-32291 Msa1402420:CDS 45.0%
ACCAATGTCATCAGCTGATG+GGG - tig0022876:32326-32345 None:intergenic 45.0%
GACCAATGTCATCAGCTGAT+GGG - tig0022876:32327-32346 None:intergenic 45.0%
TGACCAATGTCATCAGCTGA+TGG - tig0022876:32328-32347 None:intergenic 45.0%
ATGGGTAGTTTGGATGTGGA+CGG + tig0022876:32481-32500 Msa1402420:CDS 45.0%
GCTATCATTGAAGCAGCAAC+AGG + tig0022876:32902-32921 Msa1402420:intron 45.0%
AATGGTTGAGCTCTGCCAAT+GGG - tig0022876:33107-33126 None:intergenic 45.0%
AAATGGTTGAGCTCTGCCAA+TGG - tig0022876:33108-33127 None:intergenic 45.0%
ACCTTGACTGATGTTGCCTT+TGG + tig0022876:33198-33217 Msa1402420:intron 45.0%
ACCAAAGGCAACATCAGTCA+AGG - tig0022876:33202-33221 None:intergenic 45.0%
GACAGGCCACAAAATACCAA+AGG - tig0022876:33217-33236 None:intergenic 45.0%
TAGCCATGTTTGTCCAGTTC+AGG - tig0022876:33498-33517 None:intergenic 45.0%
! TGTATTTACGGTGGGTTCAC+AGG + tig0022876:33612-33631 Msa1402420:intron 45.0%
CTTCTGAGTGGTTGGAATCA+TGG - tig0022876:33834-33853 None:intergenic 45.0%
GAAAATTGCCTTGAATCGGC+TGG + tig0022876:33853-33872 Msa1402420:CDS 45.0%
! TACCTTAACCAGCCGATTCA+AGG - tig0022876:33864-33883 None:intergenic 45.0%
GAAAAGGCAACTTCTGTGTG+TGG + tig0022876:34037-34056 Msa1402420:CDS 45.0%
CTTGTCTACTCATGCCTTCA+AGG + tig0022876:34102-34121 Msa1402420:intron 45.0%
TGTCTACTCATGCCTTCAAG+GGG + tig0022876:34104-34123 Msa1402420:intron 45.0%
GACTATTCTGGCAACTTCTG+AGG + tig0022876:34315-34334 Msa1402420:intron 45.0%
! TCATGTTGCTTGTGGGCTTT+AGG + tig0022876:34528-34547 Msa1402420:intron 45.0%
CATTGGAATGTCTGCACTGA+CGG - tig0022876:34723-34742 None:intergenic 45.0%
!! GACATTCCAATGCTGGTTTG+TGG + tig0022876:34731-34750 Msa1402420:CDS 45.0%
GAGAAGCAATCAAACCTTCC+CGG - tig0022876:34773-34792 None:intergenic 45.0%
TCCTCATGCACTTCTTGCAA+TGG + tig0022876:34873-34892 Msa1402420:CDS 45.0%
CCTCATGCACTTCTTGCAAT+GGG + tig0022876:34874-34893 Msa1402420:CDS 45.0%
GTCAACTGCTAAATCAGGGT+GGG - tig0022876:34914-34933 None:intergenic 45.0%
GTGGGTCAACTGCTAAATCA+GGG - tig0022876:34918-34937 None:intergenic 45.0%
AGTGGGTCAACTGCTAAATC+AGG - tig0022876:34919-34938 None:intergenic 45.0%
GAGGACGCAATATGTTGAGT+GGG - tig0022876:34936-34955 None:intergenic 45.0%
TGAGGACGCAATATGTTGAG+TGG - tig0022876:34937-34956 None:intergenic 45.0%
! ATTGATTCACCAGTTGCCAC+TGG + tig0022876:34963-34982 Msa1402420:CDS 45.0%
TCTTCGTTTGCAAGAACGGT+TGG + tig0022876:35140-35159 Msa1402420:CDS 45.0%
!! TTTGCAAGAACGGTTGGTCT+TGG + tig0022876:35146-35165 Msa1402420:CDS 45.0%
! TTCAGCGGATTCATTGGTTG+TGG + tig0022876:35351-35370 Msa1402420:intron 45.0%
GCTGCTGCAAAAATAAACCC+AGG + tig0022876:35476-35495 Msa1402420:CDS 45.0%
AAGTGCGGTCTTGAAGCAAA+AGG - tig0022876:35827-35846 None:intergenic 45.0%
ACCAGCACTTCAGTAAAGTG+CGG - tig0022876:35842-35861 None:intergenic 45.0%
GCTTTAACATCCCATTGGAC+AGG + tig0022876:35896-35915 Msa1402420:intron 45.0%
! TTTTCTCAGGTATCTCCGTG+TGG + tig0022876:36094-36113 Msa1402420:three_prime_UTR 45.0%
TTTCTCAGGTATCTCCGTGT+GGG + tig0022876:36095-36114 Msa1402420:three_prime_UTR 45.0%
! GAGAAGGAGGCATATCAGTA+AGG - tig0022876:36183-36202 None:intergenic 45.0%
!!! TTTTTATATTAATGTATTTA+CGG + tig0022876:33600-33619 Msa1402420:intron 5.0%
TTGAGGTGATTCAAGGCTGG+CGG + tig0022876:29846-29865 Msa1402420:five_prime_UTR 50.0%
GTGAGCTCACAGCCTACAAT+GGG - tig0022876:30039-30058 None:intergenic 50.0%
! TTGTAACGGTCTTGTCAGGC+CGG - tig0022876:30080-30099 None:intergenic 50.0%
! TCGGTTGTAACGGTCTTGTC+AGG - tig0022876:30084-30103 None:intergenic 50.0%
! GGAGACATCGTCGGTTGTAA+CGG - tig0022876:30094-30113 None:intergenic 50.0%
TCCGAATCCGCTCCATTAGA+TGG + tig0022876:30111-30130 Msa1402420:CDS 50.0%
CGACTGTTATGTTGAGACGG+AGG + tig0022876:30845-30864 Msa1402420:intron 50.0%
! ACAACCTAGGCACTGCAATG+TGG - tig0022876:31999-32018 None:intergenic 50.0%
GCAGTGCCTAGGTTGTCTTA+AGG + tig0022876:32003-32022 Msa1402420:CDS 50.0%
CAGCACGGTCATGTAAGACT+CGG - tig0022876:32096-32115 None:intergenic 50.0%
AGAAGCAGACGAGGATAAGC+TGG - tig0022876:32200-32219 None:intergenic 50.0%
GTTAGCACTAGAAGCAGACG+AGG - tig0022876:32209-32228 None:intergenic 50.0%
CAGTTGCAGACCCATTTGTC+AGG - tig0022876:32231-32250 None:intergenic 50.0%
ACCCCATCAGCTGATGACAT+TGG + tig0022876:32322-32341 Msa1402420:CDS 50.0%
CAACAGGTATCAGTTGGCGA+GGG - tig0022876:32456-32475 None:intergenic 50.0%
TCAACAGGTATCAGTTGGCG+AGG - tig0022876:32457-32476 None:intergenic 50.0%
TCGCGTCAACAGGTATCAGT+TGG - tig0022876:32462-32481 None:intergenic 50.0%
ACTGATACCTGTTGACGCGA+TGG + tig0022876:32462-32481 Msa1402420:CDS 50.0%
CTGATACCTGTTGACGCGAT+GGG + tig0022876:32463-32482 Msa1402420:CDS 50.0%
AAACTACCCATCGCGTCAAC+AGG - tig0022876:32472-32491 None:intergenic 50.0%
TGTTGACGCGATGGGTAGTT+TGG + tig0022876:32471-32490 Msa1402420:CDS 50.0%
TGGGTAGTTTGGATGTGGAC+GGG + tig0022876:32482-32501 Msa1402420:CDS 50.0%
GACGGGCGTATAACATCATC+AGG + tig0022876:32499-32518 Msa1402420:CDS 50.0%
ATGGTTGAGCTCTGCCAATG+GGG - tig0022876:33106-33125 None:intergenic 50.0%
! TCTTTTGGGCCGTGGTATTG+TGG + tig0022876:33289-33308 Msa1402420:intron 50.0%
ATCACCCCACCACAATACCA+CGG - tig0022876:33301-33320 None:intergenic 50.0%
CATGCATTCTGCTTGCTCTC+AGG + tig0022876:33440-33459 Msa1402420:intron 50.0%
GCTCCTGAACTGGACAAACA+TGG + tig0022876:33492-33511 Msa1402420:CDS 50.0%
! TGCCTTGAATCGGCTGGTTA+AGG + tig0022876:33859-33878 Msa1402420:CDS 50.0%
! CACAGAAGTTGCCTTTTCCC+TGG - tig0022876:34035-34054 None:intergenic 50.0%
CAGTGCAGACATTCCAATGC+TGG + tig0022876:34724-34743 Msa1402420:CDS 50.0%
! CCCATTGCAAGAAGTGCATG+AGG - tig0022876:34877-34896 None:intergenic 50.0%
TGCACTTCTTGCAATGGGCA+AGG + tig0022876:34879-34898 Msa1402420:CDS 50.0%
CTGCTAAATCAGGGTGGGAT+GGG - tig0022876:34909-34928 None:intergenic 50.0%
ACTGCTAAATCAGGGTGGGA+TGG - tig0022876:34910-34929 None:intergenic 50.0%
GGTCAACTGCTAAATCAGGG+TGG - tig0022876:34915-34934 None:intergenic 50.0%
CACAATTACAGTGGGAGACC+TGG - tig0022876:35038-35057 None:intergenic 50.0%
TGAGCAGCATAAGCGGAGAA+TGG + tig0022876:35172-35191 Msa1402420:CDS 50.0%
! GGTGGTTTCAGCGGATTCAT+TGG + tig0022876:35345-35364 Msa1402420:intron 50.0%
CAGCACTACCTTCTCCTGAA+TGG + tig0022876:35419-35438 Msa1402420:CDS 50.0%
TCTGAGGACCATTCAGGAGA+AGG - tig0022876:35430-35449 None:intergenic 50.0%
ACCGCACTTTACTGAAGTGC+TGG + tig0022876:35838-35857 Msa1402420:intron 50.0%
!! GCACTTTACTGAAGTGCTGG+TGG + tig0022876:35841-35860 Msa1402420:intron 50.0%
CGACTCAAACCCTGTCCAAT+GGG - tig0022876:35909-35928 None:intergenic 50.0%
CCATTGGACAGGGTTTGAGT+CGG + tig0022876:35907-35926 Msa1402420:intron 50.0%
! ACTGAAGCATCTTGCCATCC+AGG - tig0022876:35946-35965 None:intergenic 50.0%
TTCTCAGGTATCTCCGTGTG+GGG + tig0022876:36096-36115 Msa1402420:three_prime_UTR 50.0%
AAATAGATTGGGGAGGGGGT+GGG - tig0022876:36205-36224 None:intergenic 50.0%
TAAATAGATTGGGGAGGGGG+TGG - tig0022876:36206-36225 None:intergenic 50.0%
!! AATCGGACTGGCTTGAGGAT+GGG - tig0022876:36299-36318 None:intergenic 50.0%
TGAGGTGATTCAAGGCTGGC+GGG + tig0022876:29847-29866 Msa1402420:five_prime_UTR 55.0%
! TTCAAGGCTGGCGGGTATTG+AGG + tig0022876:29855-29874 Msa1402420:five_prime_UTR 55.0%
!! AAGTAAATGGCGGATCCGCC+TGG + tig0022876:29880-29899 Msa1402420:five_prime_UTR 55.0%
!! TTATGGTGGCGGATACCAGG+CGG - tig0022876:29898-29917 None:intergenic 55.0%
CGTGAGCTCACAGCCTACAA+TGG - tig0022876:30040-30059 None:intergenic 55.0%
CGCCTTATGTGCTCTTACGC+CGG + tig0022876:30058-30077 Msa1402420:CDS 55.0%
! AGCGGATTCGGAGACATCGT+CGG - tig0022876:30103-30122 None:intergenic 55.0%
TAGTGTGCATCCATCCGAGC+AGG + tig0022876:31973-31992 Msa1402420:CDS 55.0%
CACGGTCATGTAAGACTCGG+TGG - tig0022876:32093-32112 None:intergenic 55.0%
AGTTGGCGAGGGATAGGTGA+GGG - tig0022876:32445-32464 None:intergenic 55.0%
GGTATCAGTTGGCGAGGGAT+AGG - tig0022876:32451-32470 None:intergenic 55.0%
CGCGATGGGTAGTTTGGATG+TGG + tig0022876:32477-32496 Msa1402420:CDS 55.0%
! GTTTTGTCTGCGATACGGCC+AGG - tig0022876:32611-32630 None:intergenic 55.0%
!! AGGTGGATTCTTTTGGGCCG+TGG + tig0022876:33281-33300 Msa1402420:intron 55.0%
TTTGGGCCGTGGTATTGTGG+TGG + tig0022876:33292-33311 Msa1402420:intron 55.0%
TTGGGCCGTGGTATTGTGGT+GGG + tig0022876:33293-33312 Msa1402420:intron 55.0%
TCGCACATTGTGCCCCTTGA+AGG - tig0022876:34119-34138 None:intergenic 55.0%
CCGACTCAAACCCTGTCCAA+TGG - tig0022876:35910-35929 None:intergenic 55.0%
TCATTGCAGGGAACCCCACA+CGG - tig0022876:36112-36131 None:intergenic 55.0%
!! CAATCGGACTGGCTTGAGGA+TGG - tig0022876:36300-36319 None:intergenic 55.0%
CTCAAGCCAGTCCGATTGTG+CGG + tig0022876:36302-36321 Msa1402420:three_prime_UTR 55.0%
AAGCTCACCAGCCGCACAAT+CGG - tig0022876:36316-36335 None:intergenic 55.0%
ATTGTGCGGCTGGTGAGCTT+AGG + tig0022876:36316-36335 Msa1402420:three_prime_UTR 55.0%
TTGTGCGGCTGGTGAGCTTA+GGG + tig0022876:36317-36336 Msa1402420:three_prime_UTR 55.0%
! GGCCGGCGTAAGAGCACATA+AGG - tig0022876:30063-30082 None:intergenic 60.0%
TGCAATGTGGCCTGCTCGGA+TGG - tig0022876:31986-32005 None:intergenic 60.0%
GCACTGCAATGTGGCCTGCT+CGG - tig0022876:31990-32009 None:intergenic 60.0%
CAGGCCACATTGCAGTGCCT+AGG + tig0022876:31992-32011 Msa1402420:CDS 60.0%
TGAGGGAGCTGGAATGACCC+GGG - tig0022876:32428-32447 None:intergenic 60.0%
GTGAGGGAGCTGGAATGACC+CGG - tig0022876:32429-32448 None:intergenic 60.0%
CAGTTGGCGAGGGATAGGTG+AGG - tig0022876:32446-32465 None:intergenic 60.0%
GCCAGGATAGAGCCCATGAC+GGG - tig0022876:32594-32613 None:intergenic 60.0%
GGCCAGGATAGAGCCCATGA+CGG - tig0022876:32595-32614 None:intergenic 60.0%
TGGGCCGTGGTATTGTGGTG+GGG + tig0022876:33294-33313 Msa1402420:intron 60.0%
!! CGCACAATCGGACTGGCTTG+AGG - tig0022876:36304-36323 None:intergenic 60.0%
GGCTGGTGAGCTTAGGGCAT+TGG + tig0022876:36323-36342 Msa1402420:three_prime_UTR 60.0%
CGAGGGATAGGTGAGGGAGC+TGG - tig0022876:32439-32458 None:intergenic 65.0%
GCCCGTCATGGGCTCTATCC+TGG + tig0022876:32590-32609 Msa1402420:CDS 65.0%
ATTGGGGAGGGGGTGGGAGA+AGG - tig0022876:36199-36218 None:intergenic 65.0%
AGCCAGTCCGATTGTGCGGC+TGG + tig0022876:36306-36325 Msa1402420:three_prime_UTR 65.0%
CACCAGCCGCACAATCGGAC+TGG - tig0022876:36311-36330 None:intergenic 65.0%
GGGGAGGGGGTGGGAGAAGG+AGG - tig0022876:36196-36215 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
tig0022876 gene 29543 36492 29543 ID=Msa1402420;Name=Msa1402420
tig0022876 mRNA 29543 36492 29543 ID=Msa1402420-mRNA-1;Parent=Msa1402420;Name=Msa1402420-mRNA-1;_AED=0.04;_eAED=0.04;_QI=454|1|1|1|0.90|0.83|12|509|600
tig0022876 exon 29543 30154 29543 ID=Msa1402420-mRNA-1:exon:18899;Parent=Msa1402420-mRNA-1
tig0022876 exon 31937 32681 31937 ID=Msa1402420-mRNA-1:exon:18900;Parent=Msa1402420-mRNA-1
tig0022876 exon 33462 33548 33462 ID=Msa1402420-mRNA-1:exon:18901;Parent=Msa1402420-mRNA-1
tig0022876 exon 33634 33717 33634 ID=Msa1402420-mRNA-1:exon:18902;Parent=Msa1402420-mRNA-1
tig0022876 exon 33794 33880 33794 ID=Msa1402420-mRNA-1:exon:18903;Parent=Msa1402420-mRNA-1
tig0022876 exon 33972 34058 33972 ID=Msa1402420-mRNA-1:exon:18904;Parent=Msa1402420-mRNA-1
tig0022876 exon 34550 34603 34550 ID=Msa1402420-mRNA-1:exon:18905;Parent=Msa1402420-mRNA-1
tig0022876 exon 34686 34777 34686 ID=Msa1402420-mRNA-1:exon:18906;Parent=Msa1402420-mRNA-1
tig0022876 exon 34870 34984 34870 ID=Msa1402420-mRNA-1:exon:18907;Parent=Msa1402420-mRNA-1
tig0022876 exon 35128 35272 35128 ID=Msa1402420-mRNA-1:exon:18908;Parent=Msa1402420-mRNA-1
tig0022876 exon 35356 35519 35356 ID=Msa1402420-mRNA-1:exon:18909;Parent=Msa1402420-mRNA-1
tig0022876 exon 35999 36492 35999 ID=Msa1402420-mRNA-1:exon:18910;Parent=Msa1402420-mRNA-1
tig0022876 five_prime_UTR 29543 29996 29543 ID=Msa1402420-mRNA-1:five_prime_utr;Parent=Msa1402420-mRNA-1
tig0022876 CDS 29997 30154 29997 ID=Msa1402420-mRNA-1:cds;Parent=Msa1402420-mRNA-1
tig0022876 CDS 31937 32681 31937 ID=Msa1402420-mRNA-1:cds;Parent=Msa1402420-mRNA-1
tig0022876 CDS 33462 33548 33462 ID=Msa1402420-mRNA-1:cds;Parent=Msa1402420-mRNA-1
tig0022876 CDS 33634 33717 33634 ID=Msa1402420-mRNA-1:cds;Parent=Msa1402420-mRNA-1
tig0022876 CDS 33794 33880 33794 ID=Msa1402420-mRNA-1:cds;Parent=Msa1402420-mRNA-1
tig0022876 CDS 33972 34058 33972 ID=Msa1402420-mRNA-1:cds;Parent=Msa1402420-mRNA-1
tig0022876 CDS 34550 34603 34550 ID=Msa1402420-mRNA-1:cds;Parent=Msa1402420-mRNA-1
tig0022876 CDS 34686 34777 34686 ID=Msa1402420-mRNA-1:cds;Parent=Msa1402420-mRNA-1
tig0022876 CDS 34870 34984 34870 ID=Msa1402420-mRNA-1:cds;Parent=Msa1402420-mRNA-1
tig0022876 CDS 35128 35272 35128 ID=Msa1402420-mRNA-1:cds;Parent=Msa1402420-mRNA-1
tig0022876 CDS 35356 35504 35356 ID=Msa1402420-mRNA-1:cds;Parent=Msa1402420-mRNA-1
tig0022876 three_prime_UTR 35505 35519 35505 ID=Msa1402420-mRNA-1:three_prime_utr;Parent=Msa1402420-mRNA-1
tig0022876 three_prime_UTR 35999 36492 35999 ID=Msa1402420-mRNA-1:three_prime_utr;Parent=Msa1402420-mRNA-1
Gene Sequence

>Msa1402420

ATGCTGAACGTGCTGCGTGTGCATCTTCCTTCTGATATTCCCATTGTAGGCTGTGAGCTCACGCCTTATGTGCTCTTACGCCGGCCTGACAAGACCGTTACAACCGACGATGTCTCCGAATCCGCTCCATTAGATGGTCATTTTTTGCGCTATAAGTGGTATCGTGTACAGAGTGATAAAAAGGTTGCTGTTTGTAGTGTGCATCCATCCGAGCAGGCCACATTGCAGTGCCTAGGTTGTCTTAAGGCTAAAATACCTGTTTCCAAAAGTTACCATTGCAGTCCAAAGTGTTTCTCAGATGCATGGCAGCACCACCGAGTCTTACATGACCGTGCTGCAAGTGCAGTTAATGAAAATGGAAATGAGGAGGAGGAGGTATTTGGGAGATTTAATAATTCTGGGTCTGGGTCAATCAATACCAGCTTATCCTCGTCTGCTTCTAGTGCTAACCTGACAAATGGGTCTGCAACTGTGTATCCTACAACTGTTTCACAACGAAATGGCGGTGAAACTTGGTTTGAAGTTGGACGATCAAAGACATATACCCCATCAGCTGATGACATTGGTCATGTCCTTAAATTTGAGTGTGTTGTAGTTGATGCAGAGACAAAACTTACTGTGGGGCACACAAACACTATACTAACTTCCCGGGTCATTCCAGCTCCCTCACCTATCCCTCGCCAACTGATACCTGTTGACGCGATGGGTAGTTTGGATGTGGACGGGCGTATAACATCATCAGGAACTTTTACTGTTTTATCATATAACATATTGTCTGATTCATATGCCTCAAATGATCTATACAATTACTGCCCGTCATGGGCTCTATCCTGGCCGTATCGCAGACAAAACTTGTTACGAGAAATAGTTGGTTACCGTGCCGATATTATTTGTCTCCAGGAGGTTCAAAGTGATCATTATGATGAATTTTTCGCTCCTGAACTGGACAAACATGGCTATTACGGTCTTTACAAGAGAAAAACAAACGAGGTATATAATGGCAACATAAATACAATTGATGGTTGTGCAACATTTTTCCGTAGAGACAGATTCTCACATGTGAAGAAATATGAGGTTGAGTTTAACAAGGCTGCACAGTCTTTAACAGATGCCATGATTCCAACCACTCAGAAGAAAATTGCCTTGAATCGGCTGGTTAAGGATAATGTCGCACTAATAGTTGTTTTAGAAGCAAAAGTAAACAATCAGCCTGTTGATAATCCAGGGAAAAGGCAACTTCTGTGTGTGGCAAATACACATGTAAATGTCCACCAAGATTTAAAGGATGTCAAGCTCTGGCAAGTGCACACTCTCTTAAAAGGATTGGAGAAAATTGCCGTCAGTGCAGACATTCCAATGCTGGTTTGTGGAGATTTCAATTCAGTTCCGGGAAGTGCTCCTCATGCACTTCTTGCAATGGGCAAGGTAGACCCATCCCACCCTGATTTAGCAGTTGACCCACTCAACATATTGCGTCCTCACAGCAAATTGATTCACCAGTTGCCACTGGTCAGTGCTTATTCTTCGTTTGCAAGAACGGTTGGTCTTGGATATGAGCAGCATAAGCGGAGAATGGATAGCTCGACAAACGAACCTTTATTTACAAATGTCACTAGAGATTTTATTGGCTCTCTTGATTATATATTTTACACAGCGGATTCATTGGTTGTGGAGTCATTATTAGAGTTATTGGATGAGGAGAGTTTGAGGAAAGACACAGCACTACCTTCTCCTGAATGGTCCTCAGATCATATAGCTCTCTTAGCTGAGTTTCGCTGCTGCAAAAATAAACCCAGGCGATGA
Protein sequence

>Msa1402420

MLNVLRVHLPSDIPIVGCELTPYVLLRRPDKTVTTDDVSESAPLDGHFLRYKWYRVQSDKKVAVCSVHPSEQATLQCLGCLKAKIPVSKSYHCSPKCFSDAWQHHRVLHDRAASAVNENGNEEEEVFGRFNNSGSGSINTSLSSSASSANLTNGSATVYPTTVSQRNGGETWFEVGRSKTYTPSADDIGHVLKFECVVVDAETKLTVGHTNTILTSRVIPAPSPIPRQLIPVDAMGSLDVDGRITSSGTFTVLSYNILSDSYASNDLYNYCPSWALSWPYRRQNLLREIVGYRADIICLQEVQSDHYDEFFAPELDKHGYYGLYKRKTNEVYNGNINTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAMIPTTQKKIALNRLVKDNVALIVVLEAKVNNQPVDNPGKRQLLCVANTHVNVHQDLKDVKLWQVHTLLKGLEKIAVSADIPMLVCGDFNSVPGSAPHALLAMGKVDPSHPDLAVDPLNILRPHSKLIHQLPLVSAYSSFARTVGLGYEQHKRRMDSSTNEPLFTNVTRDFIGSLDYIFYTADSLVVESLLELLDEESLRKDTALPSPEWSSDHIALLAEFRCCKNKPRR*