Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0993330 | XP_024641127.1 | 94.737 | 38 | 2 | 0 | 1 | 38 | 264 | 301 | 1.19e-14 | 76.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0993330 | G7KMG0 | 94.737 | 38 | 2 | 0 | 1 | 38 | 264 | 301 | 5.66e-15 | 76.6 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002490 | Msa0993330 | 0.800156 | 1.645131e-48 | -8.615850e-47 |
| Msa0004860 | Msa0993330 | 0.805037 | 1.619341e-49 | -8.615850e-47 |
| Msa0011960 | Msa0993330 | 0.801434 | 9.022695e-49 | -8.615850e-47 |
| Msa0017510 | Msa0993330 | 0.813076 | 3.074155e-51 | -8.615850e-47 |
| Msa0025730 | Msa0993330 | 0.834036 | 3.780541e-56 | -8.615850e-47 |
| Msa0028660 | Msa0993330 | 0.809380 | 1.947074e-50 | -8.615850e-47 |
| Msa0032580 | Msa0993330 | 0.812025 | 5.216944e-51 | -8.615850e-47 |
| Msa0040690 | Msa0993330 | 0.818151 | 2.276176e-52 | -8.615850e-47 |
| Msa0043660 | Msa0993330 | 0.801742 | 7.801374e-49 | -8.615850e-47 |
| Msa0044540 | Msa0993330 | -0.800419 | 1.453781e-48 | -8.615850e-47 |
| Msa0047160 | Msa0993330 | 0.803807 | 2.922653e-49 | -8.615850e-47 |
| Msa0054480 | Msa0993330 | 0.804707 | 1.898009e-49 | -8.615850e-47 |
| Msa0084380 | Msa0993330 | 0.801545 | 8.561636e-49 | -8.615850e-47 |
| Msa0090360 | Msa0993330 | 0.806661 | 7.380101e-50 | -8.615850e-47 |
| Msa0094120 | Msa0993330 | 0.810848 | 9.399131e-51 | -8.615850e-47 |
| Msa0094470 | Msa0993330 | 0.825918 | 3.606977e-54 | -8.615850e-47 |
| Msa0100740 | Msa0993330 | 0.817956 | 2.519535e-52 | -8.615850e-47 |
| Msa0607050 | Msa0993330 | 0.817890 | 2.607937e-52 | -8.615850e-47 |
| Msa0610430 | Msa0993330 | 0.824126 | 9.555318e-54 | -8.615850e-47 |
| Msa0615440 | Msa0993330 | 0.800418 | 1.454657e-48 | -8.615850e-47 |
| Msa0615710 | Msa0993330 | 0.804263 | 2.349152e-49 | -8.615850e-47 |
| Msa0621490 | Msa0993330 | 0.804505 | 2.092277e-49 | -8.615850e-47 |
| Msa0623790 | Msa0993330 | 0.813123 | 3.001960e-51 | -8.615850e-47 |
| Msa0625720 | Msa0993330 | 0.812128 | 4.955100e-51 | -8.615850e-47 |
| Msa0633840 | Msa0993330 | 0.819411 | 1.178023e-52 | -8.615850e-47 |
| Msa0639310 | Msa0993330 | 0.809267 | 2.058526e-50 | -8.615850e-47 |
| Msa0643180 | Msa0993330 | 0.817983 | 2.484441e-52 | -8.615850e-47 |
| Msa0643560 | Msa0993330 | 0.817580 | 3.062933e-52 | -8.615850e-47 |
| Msa0647500 | Msa0993330 | 0.812650 | 3.810618e-51 | -8.615850e-47 |
| Msa0649490 | Msa0993330 | 0.823537 | 1.313329e-53 | -8.615850e-47 |
| Msa0654760 | Msa0993330 | -0.809665 | 1.690934e-50 | -8.615850e-47 |
| Msa0661190 | Msa0993330 | -0.814902 | 1.216042e-51 | -8.615850e-47 |
| Msa0662500 | Msa0993330 | 0.814909 | 1.211563e-51 | -8.615850e-47 |
| Msa0663390 | Msa0993330 | 0.834369 | 3.118369e-56 | -8.615850e-47 |
| Msa0682840 | Msa0993330 | 0.830257 | 3.250775e-55 | -8.615850e-47 |
| Msa0682900 | Msa0993330 | 0.816881 | 4.399776e-52 | -8.615850e-47 |
| Msa0689260 | Msa0993330 | 0.808491 | 3.017934e-50 | -8.615850e-47 |
| Msa0690150 | Msa0993330 | 0.806097 | 9.704547e-50 | -8.615850e-47 |
| Msa0691900 | Msa0993330 | 0.814345 | 1.615466e-51 | -8.615850e-47 |
| Msa0692830 | Msa0993330 | 0.821956 | 3.064976e-53 | -8.615850e-47 |
| Msa0692950 | Msa0993330 | 0.808249 | 3.399057e-50 | -8.615850e-47 |
| Msa0698490 | Msa0993330 | 0.805003 | 1.646657e-49 | -8.615850e-47 |
| Msa0698660 | Msa0993330 | 0.806416 | 8.313816e-50 | -8.615850e-47 |
| Msa0708520 | Msa0993330 | 0.823357 | 1.447129e-53 | -8.615850e-47 |
| Msa0709400 | Msa0993330 | 0.813137 | 2.980733e-51 | -8.615850e-47 |
| Msa0709500 | Msa0993330 | 0.826608 | 2.470651e-54 | -8.615850e-47 |
| Msa0711780 | Msa0993330 | 0.823419 | 1.399582e-53 | -8.615850e-47 |
| Msa0715700 | Msa0993330 | 0.821163 | 4.672357e-53 | -8.615850e-47 |
| Msa0716840 | Msa0993330 | 0.812190 | 4.801862e-51 | -8.615850e-47 |
| Msa0720820 | Msa0993330 | 0.838602 | 2.608375e-57 | -8.615850e-47 |
| Msa0750170 | Msa0993330 | 0.807606 | 4.655855e-50 | -8.615850e-47 |
| Msa0750430 | Msa0993330 | 0.800964 | 1.125776e-48 | -8.615850e-47 |
| Msa0750880 | Msa0993330 | 0.813743 | 2.193455e-51 | -8.615850e-47 |
| Msa0761940 | Msa0993330 | 0.834446 | 2.983493e-56 | -8.615850e-47 |
| Msa0783790 | Msa0993330 | 0.815001 | 1.156173e-51 | -8.615850e-47 |
| Msa0788850 | Msa0993330 | 0.827396 | 1.601209e-54 | -8.615850e-47 |
| Msa0790660 | Msa0993330 | -0.816129 | 6.482806e-52 | -8.615850e-47 |
| Msa0790850 | Msa0993330 | 0.822383 | 2.439107e-53 | -8.615850e-47 |
| Msa0793800 | Msa0993330 | 0.801664 | 8.093491e-49 | -8.615850e-47 |
| Msa0794670 | Msa0993330 | 0.824772 | 6.734122e-54 | -8.615850e-47 |
| Msa0803890 | Msa0993330 | 0.844202 | 8.746637e-59 | -8.615850e-47 |
| Msa0808080 | Msa0993330 | 0.804848 | 1.774006e-49 | -8.615850e-47 |
| Msa0808270 | Msa0993330 | 0.847438 | 1.156715e-59 | -8.615850e-47 |
| Msa0812570 | Msa0993330 | 0.806088 | 9.749142e-50 | -8.615850e-47 |
| Msa0830540 | Msa0993330 | 0.808097 | 3.662056e-50 | -8.615850e-47 |
| Msa0841940 | Msa0993330 | 0.835812 | 1.349215e-56 | -8.615850e-47 |
| Msa0137550 | Msa0993330 | 0.808360 | 3.218207e-50 | -8.615850e-47 |
| Msa0137840 | Msa0993330 | 0.808415 | 3.132329e-50 | -8.615850e-47 |
| Msa0140820 | Msa0993330 | 0.813738 | 2.198920e-51 | -8.615850e-47 |
| Msa0142660 | Msa0993330 | 0.806741 | 7.099469e-50 | -8.615850e-47 |
| Msa0150820 | Msa0993330 | 0.806031 | 1.002084e-49 | -8.615850e-47 |
| Msa0157290 | Msa0993330 | 0.812229 | 4.708821e-51 | -8.615850e-47 |
| Msa0160550 | Msa0993330 | 0.844734 | 6.293210e-59 | -8.615850e-47 |
| Msa0172970 | Msa0993330 | 0.801328 | 9.483982e-49 | -8.615850e-47 |
| Msa0184040 | Msa0993330 | 0.806654 | 7.407791e-50 | -8.615850e-47 |
| Msa0184780 | Msa0993330 | 0.816084 | 6.634230e-52 | -8.615850e-47 |
| Msa0191050 | Msa0993330 | 0.816514 | 5.316352e-52 | -8.615850e-47 |
| Msa0195460 | Msa0993330 | 0.810443 | 1.149965e-50 | -8.615850e-47 |
| Msa0211150 | Msa0993330 | 0.806986 | 6.301250e-50 | -8.615850e-47 |
| Msa0220720 | Msa0993330 | 0.819364 | 1.207223e-52 | -8.615850e-47 |
| Msa0225740 | Msa0993330 | 0.811838 | 5.731000e-51 | -8.615850e-47 |
| Msa0228070 | Msa0993330 | 0.818339 | 2.064345e-52 | -8.615850e-47 |
| Msa0229380 | Msa0993330 | 0.801497 | 8.754919e-49 | -8.615850e-47 |
| Msa0231980 | Msa0993330 | 0.812076 | 5.086184e-51 | -8.615850e-47 |
| Msa0232050 | Msa0993330 | 0.810406 | 1.170913e-50 | -8.615850e-47 |
| Msa0233350 | Msa0993330 | 0.816060 | 6.718130e-52 | -8.615850e-47 |
| Msa0237260 | Msa0993330 | 0.804048 | 2.604370e-49 | -8.615850e-47 |
| Msa0366890 | Msa0993330 | 0.831689 | 1.447831e-55 | -8.615850e-47 |
| Msa0376300 | Msa0993330 | 0.824880 | 6.351974e-54 | -8.615850e-47 |
| Msa0376310 | Msa0993330 | 0.828368 | 9.348164e-55 | -8.615850e-47 |
| Msa0383800 | Msa0993330 | 0.801427 | 9.049880e-49 | -8.615850e-47 |
| Msa0385580 | Msa0993330 | 0.833741 | 4.480207e-56 | -8.615850e-47 |
| Msa0395820 | Msa0993330 | 0.805925 | 1.054886e-49 | -8.615850e-47 |
| Msa0402650 | Msa0993330 | 0.810305 | 1.231588e-50 | -8.615850e-47 |
| Msa0433640 | Msa0993330 | 0.807021 | 6.194810e-50 | -8.615850e-47 |
| Msa0436490 | Msa0993330 | -0.801509 | 8.705578e-49 | -8.615850e-47 |
| Msa0439200 | Msa0993330 | 0.807858 | 4.116192e-50 | -8.615850e-47 |
| Msa0471440 | Msa0993330 | 0.811977 | 5.345635e-51 | -8.615850e-47 |
| Msa0479970 | Msa0993330 | 0.814495 | 1.496531e-51 | -8.615850e-47 |
| Msa0481530 | Msa0993330 | 0.825700 | 4.063120e-54 | -8.615850e-47 |
| Msa0993330 | Msa1006840 | 0.820435 | 6.869426e-53 | -8.615850e-47 |
| Msa0993330 | Msa1012320 | 0.807536 | 4.817611e-50 | -8.615850e-47 |
| Msa0993330 | Msa1013400 | 0.865491 | 5.680965e-65 | -8.615850e-47 |
| Msa0993330 | Msa1040400 | 0.830880 | 2.289357e-55 | -8.615850e-47 |
| Msa0993330 | Msa1046020 | 0.801144 | 1.034452e-48 | -8.615850e-47 |
| Msa0993330 | Msa1081150 | 0.840068 | 1.086230e-57 | -8.615850e-47 |
| Msa0993330 | Msa1081360 | -0.827769 | 1.302521e-54 | -8.615850e-47 |
| Msa0993330 | Msa1081930 | 0.813559 | 2.407318e-51 | -8.615850e-47 |
| Msa0993330 | Msa1093530 | 0.859979 | 2.843239e-63 | -8.615850e-47 |
| Msa0993330 | Msa1104140 | 0.813234 | 2.837327e-51 | -8.615850e-47 |
| Msa0993330 | Msa1109680 | 0.805222 | 1.481478e-49 | -8.615850e-47 |
| Msa0993330 | Msa1121440 | 0.839658 | 1.388983e-57 | -8.615850e-47 |
| Msa0993330 | Msa1124960 | 0.804367 | 2.234865e-49 | -8.615850e-47 |
| Msa0993330 | Msa1125760 | 0.817097 | 3.934706e-52 | -8.615850e-47 |
| Msa0993330 | Msa1142020 | 0.805291 | 1.432915e-49 | -8.615850e-47 |
| Msa0993330 | Msa1147280 | 0.802383 | 5.757497e-49 | -8.615850e-47 |
| Msa0993330 | Msa1160590 | 0.805675 | 1.190436e-49 | -8.615850e-47 |
| Msa0993330 | Msa1165940 | 0.816763 | 4.675154e-52 | -8.615850e-47 |
| Msa0993330 | Msa1171360 | 0.826185 | 3.116992e-54 | -8.615850e-47 |
| Msa0993330 | Msa1207270 | 0.809899 | 1.506194e-50 | -8.615850e-47 |
| Msa0993330 | Msa1211890 | 0.810977 | 8.811550e-51 | -8.615850e-47 |
| Msa0993330 | Msa1218600 | 0.843636 | 1.240562e-58 | -8.615850e-47 |
| Msa0993330 | Msa1237940 | 0.835180 | 1.949090e-56 | -8.615850e-47 |
| Msa0993330 | Msa1243740 | -0.806342 | 8.619792e-50 | -8.615850e-47 |
| Msa0993330 | Msa1253020 | 0.801911 | 7.200440e-49 | -8.615850e-47 |
| Msa0993330 | Msa1254730 | 0.812359 | 4.411291e-51 | -8.615850e-47 |
| Msa0993330 | Msa1255040 | -0.833661 | 4.692024e-56 | -8.615850e-47 |
| Msa0993330 | Msa1265630 | 0.805979 | 1.027598e-49 | -8.615850e-47 |
| Msa0993330 | Msa1275360 | 0.803183 | 3.935853e-49 | -8.615850e-47 |
| Msa0993330 | Msa1283170 | 0.806194 | 9.260002e-50 | -8.615850e-47 |
| Msa0993330 | Msa1287460 | 0.803810 | 2.918100e-49 | -8.615850e-47 |
| Msa0993330 | Msa1294820 | 0.806317 | 8.723560e-50 | -8.615850e-47 |
| Msa0993330 | Msa1305710 | 0.800009 | 1.761914e-48 | -8.615850e-47 |
| Msa0993330 | Msa1306840 | 0.800543 | 1.372216e-48 | -8.615850e-47 |
| Msa0993330 | Msa1316780 | 0.801676 | 8.047385e-49 | -8.615850e-47 |
| Msa0993330 | Msa1316830 | 0.807741 | 4.359374e-50 | -8.615850e-47 |
| Msa0993330 | Msa1332040 | -0.809479 | 1.854004e-50 | -8.615850e-47 |
| Msa0993330 | Msa1353060 | 0.818811 | 1.613005e-52 | -8.615850e-47 |
| Msa0993330 | Msa1356440 | 0.824254 | 8.919201e-54 | -8.615850e-47 |
| Msa0993330 | Msa1358250 | 0.808460 | 3.063975e-50 | -8.615850e-47 |
| Msa0993330 | Msa1370070 | -0.812206 | 4.763978e-51 | -8.615850e-47 |
| Msa0993330 | Msa1374120 | 0.814632 | 1.395358e-51 | -8.615850e-47 |
| Msa0993330 | Msa1375560 | 0.814522 | 1.475926e-51 | -8.615850e-47 |
| Msa0993330 | Msa1377500 | 0.830128 | 3.496067e-55 | -8.615850e-47 |
| Msa0993330 | Msa1385460 | 0.813693 | 2.249845e-51 | -8.615850e-47 |
| Msa0993330 | Msa1386780 | 0.820664 | 6.087739e-53 | -8.615850e-47 |
| Msa0993330 | Msa1387420 | 0.802350 | 5.848368e-49 | -8.615850e-47 |
| Msa0993330 | Msa1391410 | 0.801191 | 1.011565e-48 | -8.615850e-47 |
| Msa0993330 | Msa1394290 | 0.828835 | 7.209800e-55 | -8.615850e-47 |
| Msa0993330 | Msa1402420 | -0.827490 | 1.520280e-54 | -8.615850e-47 |
| Msa0993330 | Msa1417870 | 0.800517 | 1.388898e-48 | -8.615850e-47 |
| Msa0993330 | Msa1423350 | 0.803907 | 2.786492e-49 | -8.615850e-47 |
| Msa0993330 | Msa1424750 | 0.817770 | 2.775571e-52 | -8.615850e-47 |
| Msa0993330 | Msa1426030 | 0.800565 | 1.358119e-48 | -8.615850e-47 |
| Msa0993330 | Msa1432420 | 0.811218 | 7.815597e-51 | -8.615850e-47 |
| Msa0993330 | Msa1433390 | 0.810225 | 1.281246e-50 | -8.615850e-47 |
| Msa0993330 | Msa1444310 | 0.812473 | 4.165400e-51 | -8.615850e-47 |
| Msa0993330 | Msa1453780 | -0.823326 | 1.470953e-53 | -8.615850e-47 |
| Msa0993330 | Msa1457920 | 0.829041 | 6.425678e-55 | -8.615850e-47 |
| Msa0993330 | Msa1461280 | 0.809458 | 1.873168e-50 | -8.615850e-47 |
| Msa0993330 | Msa1466300 | 0.814506 | 1.488540e-51 | -8.615850e-47 |
| Msa0257460 | Msa0993330 | 0.802053 | 6.731688e-49 | -8.615850e-47 |
| Msa0260680 | Msa0993330 | 0.822218 | 2.663898e-53 | -8.615850e-47 |
| Msa0264150 | Msa0993330 | 0.800016 | 1.756080e-48 | -8.615850e-47 |
| Msa0279220 | Msa0993330 | 0.802535 | 5.357452e-49 | -8.615850e-47 |
| Msa0280090 | Msa0993330 | 0.814878 | 1.231197e-51 | -8.615850e-47 |
| Msa0296740 | Msa0993330 | 0.806063 | 9.866304e-50 | -8.615850e-47 |
| Msa0298700 | Msa0993330 | 0.812940 | 3.291530e-51 | -8.615850e-47 |
| Msa0309770 | Msa0993330 | 0.831309 | 1.795938e-55 | -8.615850e-47 |
| Msa0318980 | Msa0993330 | 0.806974 | 6.339828e-50 | -8.615850e-47 |
| Msa0336420 | Msa0993330 | 0.822588 | 2.186454e-53 | -8.615850e-47 |
| Msa0337620 | Msa0993330 | 0.805637 | 1.212647e-49 | -8.615850e-47 |
| Msa0341030 | Msa0993330 | 0.805371 | 1.378622e-49 | -8.615850e-47 |
| Msa0341050 | Msa0993330 | 0.823131 | 1.633860e-53 | -8.615850e-47 |
| Msa0357340 | Msa0993330 | 0.804594 | 2.004153e-49 | -8.615850e-47 |
| Msa0497490 | Msa0993330 | 0.830138 | 3.476924e-55 | -8.615850e-47 |
| Msa0529890 | Msa0993330 | 0.809754 | 1.618394e-50 | -8.615850e-47 |
| Msa0547320 | Msa0993330 | 0.807518 | 4.861860e-50 | -8.615850e-47 |
| Msa0547360 | Msa0993330 | 0.801624 | 8.246656e-49 | -8.615850e-47 |
| Msa0548240 | Msa0993330 | 0.809751 | 1.620452e-50 | -8.615850e-47 |
| Msa0555450 | Msa0993330 | 0.821524 | 3.857499e-53 | -8.615850e-47 |
| Msa0585560 | Msa0993330 | 0.822534 | 2.250025e-53 | -8.615850e-47 |
| Msa0598720 | Msa0993330 | 0.813485 | 2.499670e-51 | -8.615850e-47 |
| Msa0598810 | Msa0993330 | 0.811511 | 6.749449e-51 | -8.615850e-47 |
| Msa0866550 | Msa0993330 | 0.835659 | 1.475451e-56 | -8.615850e-47 |
| Msa0871270 | Msa0993330 | 0.812724 | 3.670940e-51 | -8.615850e-47 |
| Msa0876200 | Msa0993330 | 0.807940 | 3.955000e-50 | -8.615850e-47 |
| Msa0880020 | Msa0993330 | 0.818028 | 2.427022e-52 | -8.615850e-47 |
| Msa0880140 | Msa0993330 | 0.810480 | 1.128620e-50 | -8.615850e-47 |
| Msa0902760 | Msa0993330 | 0.857644 | 1.418850e-62 | -8.615850e-47 |
| Msa0920610 | Msa0993330 | 0.814149 | 1.784975e-51 | -8.615850e-47 |
| Msa0942070 | Msa0993330 | 0.800559 | 1.361456e-48 | -8.615850e-47 |
| Msa0944190 | Msa0993330 | 0.808794 | 2.599885e-50 | -8.615850e-47 |
| Msa0945970 | Msa0993330 | 0.826981 | 2.012419e-54 | -8.615850e-47 |
| Msa0947660 | Msa0993330 | 0.802261 | 6.100938e-49 | -8.615850e-47 |
| Msa0959360 | Msa0993330 | 0.800473 | 1.417910e-48 | -8.615850e-47 |
| Msa0968590 | Msa0993330 | 0.816015 | 6.875143e-52 | -8.615850e-47 |
| Msa0968680 | Msa0993330 | 0.813895 | 2.030280e-51 | -8.615850e-47 |
| Msa0970030 | Msa0993330 | 0.827952 | 1.177036e-54 | -8.615850e-47 |
| Msa0974070 | Msa0993330 | 0.803061 | 4.172087e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0993330 | MtrunA17_Chr6g0477001 | 94.737 | 38 | 2 | 0 | 1 | 38 | 264 | 301 | 1.09e-18 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 26 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATAATTTAGTGATGAATT+AGG | 0.211043 | 6_4:+65859002 | Msa0993330:three_prime_UTR |
| AATTGCAAAATCCCTGTAAA+TGG | 0.259337 | 6_4:-65858918 | None:intergenic |
| ACTCATGTTGCTCCATTTAC+AGG | 0.268680 | 6_4:+65858906 | Msa0993330:three_prime_UTR |
| CATAATTTAGTGATGAATTA+GGG | 0.347283 | 6_4:+65859003 | Msa0993330:three_prime_UTR |
| ATGACATGTCAAAAGAAGAT+TGG | 0.390357 | 6_4:+65858027 | Msa0993330:CDS |
| GAGATTGTGATGCAACTCTT+AGG | 0.417801 | 6_4:+65858058 | Msa0993330:three_prime_UTR |
| CAGGTGAAGGAAGTGAAAAT+TGG | 0.446695 | 6_4:+65858681 | Msa0993330:three_prime_UTR |
| CAGGATTTGCATAGAATACA+AGG | 0.447678 | 6_4:-65858864 | None:intergenic |
| TTTGGACAGGTTTATCAGAA+TGG | 0.457254 | 6_4:+65857277 | None:intergenic |
| TGACATGTCAAAAGAAGATT+GGG | 0.459343 | 6_4:+65858028 | Msa0993330:CDS |
| TAGAATACAAGGATTTCTTC+CGG | 0.469711 | 6_4:-65858853 | None:intergenic |
| TTCTTCTGAGTTCAGAGTAC+CGG | 0.470217 | 6_4:+65858834 | Msa0993330:three_prime_UTR |
| CAGAATGGAGGCCTGCAGAC+TGG | 0.507925 | 6_4:+65857292 | Msa0993330:CDS |
| AATTGAGTAAGCAATTTGAA+TGG | 0.521092 | 6_4:-65857458 | None:intergenic |
| CTCATGTTGCTCCATTTACA+GGG | 0.524548 | 6_4:+65858907 | Msa0993330:three_prime_UTR |
| CCTGATTGTACTGTAAAATG+AGG | 0.527130 | 6_4:+65858883 | Msa0993330:three_prime_UTR |
| ATTGTGTTGTTCAGAGGTGC+AGG | 0.532774 | 6_4:+65858662 | Msa0993330:intron |
| TTGTGATGCAACTCTTAGGC+AGG | 0.545066 | 6_4:+65858062 | Msa0993330:three_prime_UTR |
| AAACAAGCTTACCAGTCTGC+AGG | 0.545839 | 6_4:-65857303 | None:intergenic |
| TTTCAGATCATGTTCGAGGA+TGG | 0.551741 | 6_4:+65857990 | Msa0993330:intron |
| GTTATTATGATAAAACAACT+TGG | 0.570866 | 6_4:+65857492 | Msa0993330:CDS |
| GGACAGGTTTATCAGAATGG+AGG | 0.603637 | 6_4:+65857280 | None:intergenic |
| TATCAAACAGAATATGAAGA+GGG | 0.612264 | 6_4:+65858746 | Msa0993330:three_prime_UTR |
| TTGTTCAGAGGTGCAGGTGA+AGG | 0.629492 | 6_4:+65858668 | Msa0993330:intron |
| TTATCAAACAGAATATGAAG+AGG | 0.643212 | 6_4:+65858745 | Msa0993330:three_prime_UTR |
| TAAAACAACTTGGAAATGTG+AGG | 0.644254 | 6_4:+65857502 | Msa0993330:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTATAACATATGAAATTA+AGG | - | chr6_4:65857588-65857607 | None:intergenic | 10.0% |
| !!! | GCAAAATAATAAATTTTTAT+TGG | + | chr6_4:65857847-65857866 | Msa0993330:intron | 10.0% |
| !! | AATTATAACATATGAAATTA+AGG | - | chr6_4:65857588-65857607 | None:intergenic | 10.0% |
| !!! | GCAAAATAATAAATTTTTAT+TGG | + | chr6_4:65857847-65857866 | Msa0993330:intron | 10.0% |
| !!! | AAATAATCTCTAGAATTTAA+AGG | - | chr6_4:65857912-65857931 | None:intergenic | 15.0% |
| !!! | TTTTAGGTTTATAGTATTAA+GGG | - | chr6_4:65858351-65858370 | None:intergenic | 15.0% |
| !!! | ATTTTAGGTTTATAGTATTA+AGG | - | chr6_4:65858352-65858371 | None:intergenic | 15.0% |
| !!! | AAATAATCTCTAGAATTTAA+AGG | - | chr6_4:65857912-65857931 | None:intergenic | 15.0% |
| !!! | TTTTAGGTTTATAGTATTAA+GGG | - | chr6_4:65858351-65858370 | None:intergenic | 15.0% |
| !!! | ATTTTAGGTTTATAGTATTA+AGG | - | chr6_4:65858352-65858371 | None:intergenic | 15.0% |
| !! | GTTATTATGATAAAACAACT+TGG | + | chr6_4:65857492-65857511 | Msa0993330:CDS | 20.0% |
| !!! | TAACTGCTTTTTAAAATTAG+TGG | - | chr6_4:65857809-65857828 | None:intergenic | 20.0% |
| !! | GTTATTATGATAAAACAACT+TGG | + | chr6_4:65857492-65857511 | Msa0993330:CDS | 20.0% |
| !!! | TAACTGCTTTTTAAAATTAG+TGG | - | chr6_4:65857809-65857828 | None:intergenic | 20.0% |
| !!! | TTCTGTTGTATTGATTTTAC+AGG | + | chr6_4:65857417-65857436 | Msa0993330:intron | 25.0% |
| ! | AATTGAGTAAGCAATTTGAA+TGG | - | chr6_4:65857461-65857480 | None:intergenic | 25.0% |
| ! | ATAGTATCATAAACTTCACA+AGG | - | chr6_4:65857565-65857584 | None:intergenic | 25.0% |
| !! | ATTTTACAATGCAACAGATT+TGG | + | chr6_4:65857636-65857655 | Msa0993330:intron | 25.0% |
| !! | TTTTACAATGCAACAGATTT+GGG | + | chr6_4:65857637-65857656 | Msa0993330:intron | 25.0% |
| !! | ACAGATTTGGGATTATTAAA+TGG | + | chr6_4:65857649-65857668 | Msa0993330:intron | 25.0% |
| ! | CTAATTTACAATGACAATGT+AGG | - | chr6_4:65857726-65857745 | None:intergenic | 25.0% |
| !!! | CTTTTTAAAATTAGTGGTAC+TGG | - | chr6_4:65857803-65857822 | None:intergenic | 25.0% |
| ! | TTAAAAAGCAGTTATGAAAG+TGG | + | chr6_4:65857815-65857834 | Msa0993330:intron | 25.0% |
| ! | ATAAATCCTTCCTTTCTTAT+CGG | - | chr6_4:65858199-65858218 | None:intergenic | 25.0% |
| ! | GAAAGGTTATATTATACCTA+TGG | - | chr6_4:65858329-65858348 | None:intergenic | 25.0% |
| ! | TAGCTTATGAAAATAGCTTA+TGG | + | chr6_4:65858464-65858483 | Msa0993330:intron | 25.0% |
| ! | AATAAGCTGAAAACAATGTA+AGG | - | chr6_4:65858495-65858514 | None:intergenic | 25.0% |
| !! | TTTATTGCTATTCGCAAAAA+TGG | + | chr6_4:65858619-65858638 | Msa0993330:intron | 25.0% |
| !! | TTATTGCTATTCGCAAAAAT+GGG | + | chr6_4:65858620-65858639 | Msa0993330:intron | 25.0% |
| ! | TTATCAAACAGAATATGAAG+AGG | + | chr6_4:65858745-65858764 | Msa0993330:three_prime_UTR | 25.0% |
| ! | TATCAAACAGAATATGAAGA+GGG | + | chr6_4:65858746-65858765 | Msa0993330:three_prime_UTR | 25.0% |
| !!! | TTAGACCATTTTTTAGCATA+AGG | + | chr6_4:65858976-65858995 | Msa0993330:three_prime_UTR | 25.0% |
| !!! | TTCTGTTGTATTGATTTTAC+AGG | + | chr6_4:65857417-65857436 | Msa0993330:intron | 25.0% |
| ! | AATTGAGTAAGCAATTTGAA+TGG | - | chr6_4:65857461-65857480 | None:intergenic | 25.0% |
| ! | ATAGTATCATAAACTTCACA+AGG | - | chr6_4:65857565-65857584 | None:intergenic | 25.0% |
| !! | ATTTTACAATGCAACAGATT+TGG | + | chr6_4:65857636-65857655 | Msa0993330:intron | 25.0% |
| !! | TTTTACAATGCAACAGATTT+GGG | + | chr6_4:65857637-65857656 | Msa0993330:intron | 25.0% |
| !! | ACAGATTTGGGATTATTAAA+TGG | + | chr6_4:65857649-65857668 | Msa0993330:intron | 25.0% |
| ! | CTAATTTACAATGACAATGT+AGG | - | chr6_4:65857726-65857745 | None:intergenic | 25.0% |
| !!! | CTTTTTAAAATTAGTGGTAC+TGG | - | chr6_4:65857803-65857822 | None:intergenic | 25.0% |
| ! | TTAAAAAGCAGTTATGAAAG+TGG | + | chr6_4:65857815-65857834 | Msa0993330:intron | 25.0% |
| ! | ATAAATCCTTCCTTTCTTAT+CGG | - | chr6_4:65858199-65858218 | None:intergenic | 25.0% |
| ! | GAAAGGTTATATTATACCTA+TGG | - | chr6_4:65858329-65858348 | None:intergenic | 25.0% |
| ! | TAGCTTATGAAAATAGCTTA+TGG | + | chr6_4:65858464-65858483 | Msa0993330:intron | 25.0% |
| ! | AATAAGCTGAAAACAATGTA+AGG | - | chr6_4:65858495-65858514 | None:intergenic | 25.0% |
| !! | TTTATTGCTATTCGCAAAAA+TGG | + | chr6_4:65858619-65858638 | Msa0993330:intron | 25.0% |
| !! | TTATTGCTATTCGCAAAAAT+GGG | + | chr6_4:65858620-65858639 | Msa0993330:intron | 25.0% |
| ! | TTATCAAACAGAATATGAAG+AGG | + | chr6_4:65858745-65858764 | Msa0993330:three_prime_UTR | 25.0% |
| ! | TATCAAACAGAATATGAAGA+GGG | + | chr6_4:65858746-65858765 | Msa0993330:three_prime_UTR | 25.0% |
| !!! | TTAGACCATTTTTTAGCATA+AGG | + | chr6_4:65858976-65858995 | Msa0993330:three_prime_UTR | 25.0% |
| TGTAGAAGACAACAAAAAGA+AGG | - | chr6_4:65857380-65857399 | None:intergenic | 30.0% | |
| ! | TTGATTTTACAGGTAGTTCT+CGG | + | chr6_4:65857427-65857446 | Msa0993330:intron | 30.0% |
| TAAAACAACTTGGAAATGTG+AGG | + | chr6_4:65857502-65857521 | Msa0993330:CDS | 30.0% | |
| ATGACATGTCAAAAGAAGAT+TGG | + | chr6_4:65858027-65858046 | Msa0993330:CDS | 30.0% | |
| TGACATGTCAAAAGAAGATT+GGG | + | chr6_4:65858028-65858047 | Msa0993330:CDS | 30.0% | |
| ATGCAAAAGAAATACTCACA+TGG | - | chr6_4:65858096-65858115 | None:intergenic | 30.0% | |
| TCAAATAAGCCAATTGAAAC+AGG | - | chr6_4:65858138-65858157 | None:intergenic | 30.0% | |
| GGTTTATAGTATTAAGGGAA+AGG | - | chr6_4:65858346-65858365 | None:intergenic | 30.0% | |
| ! | CTCTCATATGTAGCAATTTT+AGG | - | chr6_4:65858367-65858386 | None:intergenic | 30.0% |
| CTAAAATTGCTACATATGAG+AGG | + | chr6_4:65858365-65858384 | Msa0993330:intron | 30.0% | |
| ! | AGATGTTTTCATAAGCTATC+CGG | - | chr6_4:65858531-65858550 | None:intergenic | 30.0% |
| ! | ATAAATAGTTAGCCTATGCT+TGG | - | chr6_4:65858604-65858623 | None:intergenic | 30.0% |
| ! | CTAATTATTGTGTTGTTCAG+AGG | + | chr6_4:65858656-65858675 | Msa0993330:intron | 30.0% |
| TAGAATACAAGGATTTCTTC+CGG | - | chr6_4:65858856-65858875 | None:intergenic | 30.0% | |
| AATTGCAAAATCCCTGTAAA+TGG | - | chr6_4:65858921-65858940 | None:intergenic | 30.0% | |
| GAGTTCCTTATGCTAAAAAA+TGG | - | chr6_4:65858984-65859003 | None:intergenic | 30.0% | |
| TGTAGAAGACAACAAAAAGA+AGG | - | chr6_4:65857380-65857399 | None:intergenic | 30.0% | |
| ! | TTGATTTTACAGGTAGTTCT+CGG | + | chr6_4:65857427-65857446 | Msa0993330:intron | 30.0% |
| TAAAACAACTTGGAAATGTG+AGG | + | chr6_4:65857502-65857521 | Msa0993330:CDS | 30.0% | |
| ATGACATGTCAAAAGAAGAT+TGG | + | chr6_4:65858027-65858046 | Msa0993330:CDS | 30.0% | |
| TGACATGTCAAAAGAAGATT+GGG | + | chr6_4:65858028-65858047 | Msa0993330:CDS | 30.0% | |
| ATGCAAAAGAAATACTCACA+TGG | - | chr6_4:65858096-65858115 | None:intergenic | 30.0% | |
| TCAAATAAGCCAATTGAAAC+AGG | - | chr6_4:65858138-65858157 | None:intergenic | 30.0% | |
| GGTTTATAGTATTAAGGGAA+AGG | - | chr6_4:65858346-65858365 | None:intergenic | 30.0% | |
| ! | CTCTCATATGTAGCAATTTT+AGG | - | chr6_4:65858367-65858386 | None:intergenic | 30.0% |
| CTAAAATTGCTACATATGAG+AGG | + | chr6_4:65858365-65858384 | Msa0993330:intron | 30.0% | |
| ! | AGATGTTTTCATAAGCTATC+CGG | - | chr6_4:65858531-65858550 | None:intergenic | 30.0% |
| ! | ATAAATAGTTAGCCTATGCT+TGG | - | chr6_4:65858604-65858623 | None:intergenic | 30.0% |
| ! | CTAATTATTGTGTTGTTCAG+AGG | + | chr6_4:65858656-65858675 | Msa0993330:intron | 30.0% |
| TAGAATACAAGGATTTCTTC+CGG | - | chr6_4:65858856-65858875 | None:intergenic | 30.0% | |
| AATTGCAAAATCCCTGTAAA+TGG | - | chr6_4:65858921-65858940 | None:intergenic | 30.0% | |
| GAGTTCCTTATGCTAAAAAA+TGG | - | chr6_4:65858984-65859003 | None:intergenic | 30.0% | |
| ! | TGATTTTACAGGTAGTTCTC+GGG | + | chr6_4:65857428-65857447 | Msa0993330:intron | 35.0% |
| TGAGTATTCTCGAAAACACA+AGG | + | chr6_4:65857677-65857696 | Msa0993330:intron | 35.0% | |
| !! | GTCAGAGATTAGAGTTTTGA+TGG | + | chr6_4:65857699-65857718 | Msa0993330:intron | 35.0% |
| !! | TTAGTCTGCTTTTGACACTT+TGG | + | chr6_4:65857930-65857949 | Msa0993330:intron | 35.0% |
| !!! | ACTTTTTCAGATCATGTTCG+AGG | + | chr6_4:65857986-65858005 | Msa0993330:intron | 35.0% |
| TAGGATTAACTTAACGCCAT+AGG | + | chr6_4:65858310-65858329 | Msa0993330:intron | 35.0% | |
| !! | CTTATTTTCATAAGCTCTCC+CGG | + | chr6_4:65858509-65858528 | Msa0993330:intron | 35.0% |
| ! | GATGTTTTCATAAGCTATCC+GGG | - | chr6_4:65858530-65858549 | None:intergenic | 35.0% |
| GAACAATTTGGAGAGACATT+TGG | - | chr6_4:65858556-65858575 | None:intergenic | 35.0% | |
| TGTTACATGTTACCAAGCAT+AGG | + | chr6_4:65858589-65858608 | Msa0993330:intron | 35.0% | |
| CAGGATTTGCATAGAATACA+AGG | - | chr6_4:65858867-65858886 | None:intergenic | 35.0% | |
| ! | CCTCATTTTACAGTACAATC+AGG | - | chr6_4:65858886-65858905 | None:intergenic | 35.0% |
| CCTGATTGTACTGTAAAATG+AGG | + | chr6_4:65858883-65858902 | Msa0993330:three_prime_UTR | 35.0% | |
| ! | TGATTTTACAGGTAGTTCTC+GGG | + | chr6_4:65857428-65857447 | Msa0993330:intron | 35.0% |
| TGAGTATTCTCGAAAACACA+AGG | + | chr6_4:65857677-65857696 | Msa0993330:intron | 35.0% | |
| !! | GTCAGAGATTAGAGTTTTGA+TGG | + | chr6_4:65857699-65857718 | Msa0993330:intron | 35.0% |
| !! | TTAGTCTGCTTTTGACACTT+TGG | + | chr6_4:65857930-65857949 | Msa0993330:intron | 35.0% |
| !!! | ACTTTTTCAGATCATGTTCG+AGG | + | chr6_4:65857986-65858005 | Msa0993330:intron | 35.0% |
| TAGGATTAACTTAACGCCAT+AGG | + | chr6_4:65858310-65858329 | Msa0993330:intron | 35.0% | |
| !! | CTTATTTTCATAAGCTCTCC+CGG | + | chr6_4:65858509-65858528 | Msa0993330:intron | 35.0% |
| ! | GATGTTTTCATAAGCTATCC+GGG | - | chr6_4:65858530-65858549 | None:intergenic | 35.0% |
| GAACAATTTGGAGAGACATT+TGG | - | chr6_4:65858556-65858575 | None:intergenic | 35.0% | |
| TGTTACATGTTACCAAGCAT+AGG | + | chr6_4:65858589-65858608 | Msa0993330:intron | 35.0% | |
| CAGGATTTGCATAGAATACA+AGG | - | chr6_4:65858867-65858886 | None:intergenic | 35.0% | |
| ! | CCTCATTTTACAGTACAATC+AGG | - | chr6_4:65858886-65858905 | None:intergenic | 35.0% |
| CCTGATTGTACTGTAAAATG+AGG | + | chr6_4:65858883-65858902 | Msa0993330:three_prime_UTR | 35.0% | |
| GACAGATGGAGACTTTCAAT+TGG | - | chr6_4:65857771-65857790 | None:intergenic | 40.0% | |
| GTTATGAAAGTGGAACTGTG+TGG | + | chr6_4:65857825-65857844 | Msa0993330:intron | 40.0% | |
| TTTCAGATCATGTTCGAGGA+TGG | + | chr6_4:65857990-65858009 | Msa0993330:intron | 40.0% | |
| GAGATTGTGATGCAACTCTT+AGG | + | chr6_4:65858058-65858077 | Msa0993330:three_prime_UTR | 40.0% | |
| !! | TTCCTTTCTTATCGGTGTTG+AGG | - | chr6_4:65858191-65858210 | None:intergenic | 40.0% |
| TCAACACCGATAAGAAAGGA+AGG | + | chr6_4:65858190-65858209 | Msa0993330:intron | 40.0% | |
| CAGGAGAGAATGGAACAATT+TGG | - | chr6_4:65858568-65858587 | None:intergenic | 40.0% | |
| CATGTAACAACAGGAGAGAA+TGG | - | chr6_4:65858578-65858597 | None:intergenic | 40.0% | |
| ! | GCTTGGTAACATGTAACAAC+AGG | - | chr6_4:65858587-65858606 | None:intergenic | 40.0% |
| CAGGTGAAGGAAGTGAAAAT+TGG | + | chr6_4:65858681-65858700 | Msa0993330:three_prime_UTR | 40.0% | |
| TTCTTCTGAGTTCAGAGTAC+CGG | + | chr6_4:65858834-65858853 | Msa0993330:three_prime_UTR | 40.0% | |
| ACTCATGTTGCTCCATTTAC+AGG | + | chr6_4:65858906-65858925 | Msa0993330:three_prime_UTR | 40.0% | |
| CTCATGTTGCTCCATTTACA+GGG | + | chr6_4:65858907-65858926 | Msa0993330:three_prime_UTR | 40.0% | |
| GACAGATGGAGACTTTCAAT+TGG | - | chr6_4:65857771-65857790 | None:intergenic | 40.0% | |
| GTTATGAAAGTGGAACTGTG+TGG | + | chr6_4:65857825-65857844 | Msa0993330:intron | 40.0% | |
| TTTCAGATCATGTTCGAGGA+TGG | + | chr6_4:65857990-65858009 | Msa0993330:intron | 40.0% | |
| GAGATTGTGATGCAACTCTT+AGG | + | chr6_4:65858058-65858077 | Msa0993330:three_prime_UTR | 40.0% | |
| !! | TTCCTTTCTTATCGGTGTTG+AGG | - | chr6_4:65858191-65858210 | None:intergenic | 40.0% |
| TCAACACCGATAAGAAAGGA+AGG | + | chr6_4:65858190-65858209 | Msa0993330:intron | 40.0% | |
| CAGGAGAGAATGGAACAATT+TGG | - | chr6_4:65858568-65858587 | None:intergenic | 40.0% | |
| CATGTAACAACAGGAGAGAA+TGG | - | chr6_4:65858578-65858597 | None:intergenic | 40.0% | |
| ! | GCTTGGTAACATGTAACAAC+AGG | - | chr6_4:65858587-65858606 | None:intergenic | 40.0% |
| CAGGTGAAGGAAGTGAAAAT+TGG | + | chr6_4:65858681-65858700 | Msa0993330:three_prime_UTR | 40.0% | |
| TTCTTCTGAGTTCAGAGTAC+CGG | + | chr6_4:65858834-65858853 | Msa0993330:three_prime_UTR | 40.0% | |
| ACTCATGTTGCTCCATTTAC+AGG | + | chr6_4:65858906-65858925 | Msa0993330:three_prime_UTR | 40.0% | |
| CTCATGTTGCTCCATTTACA+GGG | + | chr6_4:65858907-65858926 | Msa0993330:three_prime_UTR | 40.0% | |
| AAACAAGCTTACCAGTCTGC+AGG | - | chr6_4:65857306-65857325 | None:intergenic | 45.0% | |
| !! | TTAGTGGTACTGGTGTGACA+TGG | - | chr6_4:65857793-65857812 | None:intergenic | 45.0% |
| TTGTGATGCAACTCTTAGGC+AGG | + | chr6_4:65858062-65858081 | Msa0993330:three_prime_UTR | 45.0% | |
| GACATCGTGCCTGTTTCAAT+TGG | + | chr6_4:65858126-65858145 | Msa0993330:intron | 45.0% | |
| GACCTCAACACCGATAAGAA+AGG | + | chr6_4:65858186-65858205 | Msa0993330:intron | 45.0% | |
| ACTCCACTAGTACCAATAGG+CGG | - | chr6_4:65858291-65858310 | None:intergenic | 45.0% | |
| CCTACTCCACTAGTACCAAT+AGG | - | chr6_4:65858294-65858313 | None:intergenic | 45.0% | |
| CCTATTGGTACTAGTGGAGT+AGG | + | chr6_4:65858291-65858310 | Msa0993330:intron | 45.0% | |
| ATATGAGAGGCCGCATTCAA+CGG | + | chr6_4:65858378-65858397 | Msa0993330:intron | 45.0% | |
| ACAGTCTCACGGGTACTTTA+TGG | - | chr6_4:65858438-65858457 | None:intergenic | 45.0% | |
| ! | AAAGTACCCGTGAGACTGTT+TGG | + | chr6_4:65858439-65858458 | Msa0993330:intron | 45.0% |
| AAGTACCCGTGAGACTGTTT+GGG | + | chr6_4:65858440-65858459 | Msa0993330:intron | 45.0% | |
| AGCTATCCCAAACAGTCTCA+CGG | - | chr6_4:65858449-65858468 | None:intergenic | 45.0% | |
| ! | ATTGTGTTGTTCAGAGGTGC+AGG | + | chr6_4:65858662-65858681 | Msa0993330:intron | 45.0% |
| AAACAAGCTTACCAGTCTGC+AGG | - | chr6_4:65857306-65857325 | None:intergenic | 45.0% | |
| !! | TTAGTGGTACTGGTGTGACA+TGG | - | chr6_4:65857793-65857812 | None:intergenic | 45.0% |
| TTGTGATGCAACTCTTAGGC+AGG | + | chr6_4:65858062-65858081 | Msa0993330:three_prime_UTR | 45.0% | |
| GACATCGTGCCTGTTTCAAT+TGG | + | chr6_4:65858126-65858145 | Msa0993330:intron | 45.0% | |
| GACCTCAACACCGATAAGAA+AGG | + | chr6_4:65858186-65858205 | Msa0993330:intron | 45.0% | |
| ACTCCACTAGTACCAATAGG+CGG | - | chr6_4:65858291-65858310 | None:intergenic | 45.0% | |
| CCTACTCCACTAGTACCAAT+AGG | - | chr6_4:65858294-65858313 | None:intergenic | 45.0% | |
| CCTATTGGTACTAGTGGAGT+AGG | + | chr6_4:65858291-65858310 | Msa0993330:intron | 45.0% | |
| ATATGAGAGGCCGCATTCAA+CGG | + | chr6_4:65858378-65858397 | Msa0993330:intron | 45.0% | |
| ACAGTCTCACGGGTACTTTA+TGG | - | chr6_4:65858438-65858457 | None:intergenic | 45.0% | |
| ! | AAAGTACCCGTGAGACTGTT+TGG | + | chr6_4:65858439-65858458 | Msa0993330:intron | 45.0% |
| AAGTACCCGTGAGACTGTTT+GGG | + | chr6_4:65858440-65858459 | Msa0993330:intron | 45.0% | |
| AGCTATCCCAAACAGTCTCA+CGG | - | chr6_4:65858449-65858468 | None:intergenic | 45.0% | |
| ! | ATTGTGTTGTTCAGAGGTGC+AGG | + | chr6_4:65858662-65858681 | Msa0993330:intron | 45.0% |
| ACTGGTGTGACATGGACAGA+TGG | - | chr6_4:65857785-65857804 | None:intergenic | 50.0% | |
| TAGTACCAATAGGCGGCATG+GGG | - | chr6_4:65858284-65858303 | None:intergenic | 50.0% | |
| CTAGTACCAATAGGCGGCAT+GGG | - | chr6_4:65858285-65858304 | None:intergenic | 50.0% | |
| ACTAGTACCAATAGGCGGCA+TGG | - | chr6_4:65858286-65858305 | None:intergenic | 50.0% | |
| ATGCCGCCTATTGGTACTAG+TGG | + | chr6_4:65858285-65858304 | Msa0993330:intron | 50.0% | |
| TATGAGAGGCCGCATTCAAC+GGG | + | chr6_4:65858379-65858398 | Msa0993330:intron | 50.0% | |
| TCGTGCATTCCCGTTGAATG+CGG | - | chr6_4:65858391-65858410 | None:intergenic | 50.0% | |
| AACGGGAATGCACGACAGAA+GGG | + | chr6_4:65858396-65858415 | Msa0993330:intron | 50.0% | |
| GCTATCCCAAACAGTCTCAC+GGG | - | chr6_4:65858448-65858467 | None:intergenic | 50.0% | |
| ! | TTGTTCAGAGGTGCAGGTGA+AGG | + | chr6_4:65858668-65858687 | Msa0993330:intron | 50.0% |
| ACTGGTGTGACATGGACAGA+TGG | - | chr6_4:65857785-65857804 | None:intergenic | 50.0% | |
| TAGTACCAATAGGCGGCATG+GGG | - | chr6_4:65858284-65858303 | None:intergenic | 50.0% | |
| CTAGTACCAATAGGCGGCAT+GGG | - | chr6_4:65858285-65858304 | None:intergenic | 50.0% | |
| ACTAGTACCAATAGGCGGCA+TGG | - | chr6_4:65858286-65858305 | None:intergenic | 50.0% | |
| ATGCCGCCTATTGGTACTAG+TGG | + | chr6_4:65858285-65858304 | Msa0993330:intron | 50.0% | |
| TATGAGAGGCCGCATTCAAC+GGG | + | chr6_4:65858379-65858398 | Msa0993330:intron | 50.0% | |
| TCGTGCATTCCCGTTGAATG+CGG | - | chr6_4:65858391-65858410 | None:intergenic | 50.0% | |
| AACGGGAATGCACGACAGAA+GGG | + | chr6_4:65858396-65858415 | Msa0993330:intron | 50.0% | |
| GCTATCCCAAACAGTCTCAC+GGG | - | chr6_4:65858448-65858467 | None:intergenic | 50.0% | |
| ! | TTGTTCAGAGGTGCAGGTGA+AGG | + | chr6_4:65858668-65858687 | Msa0993330:intron | 50.0% |
| AGTACCAATAGGCGGCATGG+GGG | - | chr6_4:65858283-65858302 | None:intergenic | 55.0% | |
| CAACGGGAATGCACGACAGA+AGG | + | chr6_4:65858395-65858414 | Msa0993330:intron | 55.0% | |
| AGTACCAATAGGCGGCATGG+GGG | - | chr6_4:65858283-65858302 | None:intergenic | 55.0% | |
| CAACGGGAATGCACGACAGA+AGG | + | chr6_4:65858395-65858414 | Msa0993330:intron | 55.0% | |
| CAGAATGGAGGCCTGCAGAC+TGG | + | chr6_4:65857292-65857311 | Msa0993330:CDS | 60.0% | |
| !! | GGGGAAGAAGCGCTACGCTT+AGG | - | chr6_4:65858264-65858283 | None:intergenic | 60.0% |
| TCTTCCCCCATGCCGCCTAT+TGG | + | chr6_4:65858276-65858295 | Msa0993330:intron | 60.0% | |
| CAGAATGGAGGCCTGCAGAC+TGG | + | chr6_4:65857292-65857311 | Msa0993330:CDS | 60.0% | |
| !! | GGGGAAGAAGCGCTACGCTT+AGG | - | chr6_4:65858264-65858283 | None:intergenic | 60.0% |
| TCTTCCCCCATGCCGCCTAT+TGG | + | chr6_4:65858276-65858295 | Msa0993330:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 65857286 | 65859022 | 65857286 | ID=Msa0993330;Name=Msa0993330 |
| chr6_4 | mRNA | 65857286 | 65859022 | 65857286 | ID=Msa0993330-mRNA-1;Parent=Msa0993330;Name=Msa0993330-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0.66|0.75|1|0.33|0.25|4|387|57 |
| chr6_4 | exon | 65857286 | 65857313 | 65857286 | ID=Msa0993330-mRNA-1:exon:12262;Parent=Msa0993330-mRNA-1 |
| chr6_4 | exon | 65857439 | 65857523 | 65857439 | ID=Msa0993330-mRNA-1:exon:12263;Parent=Msa0993330-mRNA-1 |
| chr6_4 | exon | 65857996 | 65858096 | 65857996 | ID=Msa0993330-mRNA-1:exon:12264;Parent=Msa0993330-mRNA-1 |
| chr6_4 | exon | 65858676 | 65859022 | 65858676 | ID=Msa0993330-mRNA-1:exon:12265;Parent=Msa0993330-mRNA-1 |
| chr6_4 | CDS | 65857286 | 65857313 | 65857286 | ID=Msa0993330-mRNA-1:cds;Parent=Msa0993330-mRNA-1 |
| chr6_4 | CDS | 65857439 | 65857523 | 65857439 | ID=Msa0993330-mRNA-1:cds;Parent=Msa0993330-mRNA-1 |
| chr6_4 | CDS | 65857996 | 65858056 | 65857996 | ID=Msa0993330-mRNA-1:cds;Parent=Msa0993330-mRNA-1 |
| chr6_4 | three_prime_UTR | 65858057 | 65858096 | 65858057 | ID=Msa0993330-mRNA-1:three_prime_utr;Parent=Msa0993330-mRNA-1 |
| chr6_4 | three_prime_UTR | 65858676 | 65859022 | 65858676 | ID=Msa0993330-mRNA-1:three_prime_utr;Parent=Msa0993330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
