Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0691690 | XP_003607617.1 | 100.000 | 91 | 0 | 0 | 1 | 91 | 1 | 91 | 1.28e-59 | 187 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0691690 | sp|Q9M1Z3|LSM6A_ARATH | 87.912 | 91 | 11 | 0 | 1 | 91 | 1 | 91 | 4.31e-54 | 166 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0691690 | G7JCP5 | 100.000 | 91 | 0 | 0 | 1 | 91 | 1 | 91 | 6.11e-60 | 187 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006880 | Msa0691690 | 0.805561 | 1.258055e-49 | -8.615850e-47 |
| Msa0008090 | Msa0691690 | 0.812910 | 3.341622e-51 | -8.615850e-47 |
| Msa0020390 | Msa0691690 | 0.806889 | 6.604676e-50 | -8.615850e-47 |
| Msa0026150 | Msa0691690 | 0.806508 | 7.950823e-50 | -8.615850e-47 |
| Msa0029260 | Msa0691690 | 0.833199 | 6.115628e-56 | -8.615850e-47 |
| Msa0031820 | Msa0691690 | 0.802586 | 5.228325e-49 | -8.615850e-47 |
| Msa0033880 | Msa0691690 | 0.827931 | 1.191386e-54 | -8.615850e-47 |
| Msa0043860 | Msa0691690 | 0.815647 | 8.306426e-52 | -8.615850e-47 |
| Msa0047280 | Msa0691690 | 0.801869 | 7.345423e-49 | -8.615850e-47 |
| Msa0048180 | Msa0691690 | 0.818879 | 1.557081e-52 | -8.615850e-47 |
| Msa0055100 | Msa0691690 | 0.832601 | 8.613455e-56 | -8.615850e-47 |
| Msa0061970 | Msa0691690 | 0.825436 | 4.691515e-54 | -8.615850e-47 |
| Msa0065010 | Msa0691690 | 0.802258 | 6.109535e-49 | -8.615850e-47 |
| Msa0068020 | Msa0691690 | 0.825742 | 3.970334e-54 | -8.615850e-47 |
| Msa0074750 | Msa0691690 | 0.804354 | 2.248889e-49 | -8.615850e-47 |
| Msa0093010 | Msa0691690 | 0.803746 | 3.009744e-49 | -8.615850e-47 |
| Msa0101180 | Msa0691690 | 0.832817 | 7.611796e-56 | -8.615850e-47 |
| Msa0603570 | Msa0691690 | 0.809702 | 1.660737e-50 | -8.615850e-47 |
| Msa0609000 | Msa0691690 | 0.861775 | 8.091881e-64 | -8.615850e-47 |
| Msa0610090 | Msa0691690 | 0.802651 | 5.069455e-49 | -8.615850e-47 |
| Msa0610390 | Msa0691690 | 0.850528 | 1.601970e-60 | -8.615850e-47 |
| Msa0614510 | Msa0691690 | 0.804032 | 2.624472e-49 | -8.615850e-47 |
| Msa0615580 | Msa0691690 | 0.808295 | 3.321569e-50 | -8.615850e-47 |
| Msa0618930 | Msa0691690 | 0.819181 | 1.329302e-52 | -8.615850e-47 |
| Msa0619920 | Msa0691690 | 0.814547 | 1.457059e-51 | -8.615850e-47 |
| Msa0631350 | Msa0691690 | 0.810069 | 1.384753e-50 | -8.615850e-47 |
| Msa0644030 | Msa0691690 | 0.808200 | 3.481545e-50 | -8.615850e-47 |
| Msa0650920 | Msa0691690 | 0.836722 | 7.921163e-57 | -8.615850e-47 |
| Msa0654870 | Msa0691690 | 0.816449 | 5.499007e-52 | -8.615850e-47 |
| Msa0658480 | Msa0691690 | 0.813415 | 2.589177e-51 | -8.615850e-47 |
| Msa0659990 | Msa0691690 | 0.813940 | 1.984969e-51 | -8.615850e-47 |
| Msa0662630 | Msa0691690 | 0.827987 | 1.154775e-54 | -8.615850e-47 |
| Msa0666230 | Msa0691690 | 0.847281 | 1.277463e-59 | -8.615850e-47 |
| Msa0687230 | Msa0691690 | 0.805072 | 1.592251e-49 | -8.615850e-47 |
| Msa0687630 | Msa0691690 | 0.803413 | 3.527437e-49 | -8.615850e-47 |
| Msa0689500 | Msa0691690 | 0.811956 | 5.400344e-51 | -8.615850e-47 |
| Msa0691690 | Msa0692940 | 0.817115 | 3.897497e-52 | -8.615850e-47 |
| Msa0691690 | Msa0694990 | 0.813662 | 2.284957e-51 | -8.615850e-47 |
| Msa0691690 | Msa0695130 | 0.801323 | 9.507032e-49 | -8.615850e-47 |
| Msa0691690 | Msa0706390 | 0.817354 | 3.444821e-52 | -8.615850e-47 |
| Msa0691690 | Msa0707390 | 0.817737 | 2.823305e-52 | -8.615850e-47 |
| Msa0691690 | Msa0719420 | 0.801407 | 9.135636e-49 | -8.615850e-47 |
| Msa0691690 | Msa0734960 | 0.800002 | 1.767875e-48 | -8.615850e-47 |
| Msa0691690 | Msa0743530 | 0.802395 | 5.724619e-49 | -8.615850e-47 |
| Msa0691690 | Msa0781270 | 0.810085 | 1.373461e-50 | -8.615850e-47 |
| Msa0691690 | Msa0794050 | 0.820564 | 6.416352e-53 | -8.615850e-47 |
| Msa0691690 | Msa0795660 | 0.811806 | 5.823541e-51 | -8.615850e-47 |
| Msa0691690 | Msa0805500 | 0.820189 | 7.823966e-53 | -8.615850e-47 |
| Msa0691690 | Msa0818770 | 0.809933 | 1.480870e-50 | -8.615850e-47 |
| Msa0691690 | Msa0822170 | 0.808917 | 2.447257e-50 | -8.615850e-47 |
| Msa0691690 | Msa0822180 | 0.808311 | 3.296982e-50 | -8.615850e-47 |
| Msa0691690 | Msa0839200 | 0.825157 | 5.461850e-54 | -8.615850e-47 |
| Msa0691690 | Msa0858440 | 0.809683 | 1.675837e-50 | -8.615850e-47 |
| Msa0691690 | Msa0869010 | 0.811306 | 7.478426e-51 | -8.615850e-47 |
| Msa0691690 | Msa0888940 | 0.822140 | 2.778448e-53 | -8.615850e-47 |
| Msa0691690 | Msa0897400 | 0.814093 | 1.836337e-51 | -8.615850e-47 |
| Msa0691690 | Msa0898760 | 0.817903 | 2.590104e-52 | -8.615850e-47 |
| Msa0691690 | Msa0898890 | 0.830987 | 2.155196e-55 | -8.615850e-47 |
| Msa0691690 | Msa0901450 | 0.815943 | 7.133029e-52 | -8.615850e-47 |
| Msa0691690 | Msa0913240 | 0.825733 | 3.990902e-54 | -8.615850e-47 |
| Msa0691690 | Msa0921870 | 0.806385 | 8.440768e-50 | -8.615850e-47 |
| Msa0691690 | Msa0928120 | 0.823030 | 1.724838e-53 | -8.615850e-47 |
| Msa0691690 | Msa0943170 | 0.835386 | 1.729176e-56 | -8.615850e-47 |
| Msa0691690 | Msa0960830 | 0.867637 | 1.181708e-65 | -8.615850e-47 |
| Msa0691690 | Msa0963020 | 0.845525 | 3.846271e-59 | -8.615850e-47 |
| Msa0691690 | Msa0973320 | 0.800113 | 1.678661e-48 | -8.615850e-47 |
| Msa0691690 | Msa0976330 | 0.808079 | 3.693545e-50 | -8.615850e-47 |
| Msa0691690 | Msa0980940 | 0.832555 | 8.842890e-56 | -8.615850e-47 |
| Msa0691690 | Msa1001350 | 0.826901 | 2.103982e-54 | -8.615850e-47 |
| Msa0691690 | Msa1019240 | 0.816721 | 4.779819e-52 | -8.615850e-47 |
| Msa0691690 | Msa1019260 | 0.811963 | 5.381584e-51 | -8.615850e-47 |
| Msa0691690 | Msa1025940 | 0.830045 | 3.663830e-55 | -8.615850e-47 |
| Msa0691690 | Msa1029970 | 0.815834 | 7.545500e-52 | -8.615850e-47 |
| Msa0691690 | Msa1070390 | 0.833643 | 4.739379e-56 | -8.615850e-47 |
| Msa0691690 | Msa1072710 | 0.807626 | 4.610007e-50 | -8.615850e-47 |
| Msa0691690 | Msa1083880 | 0.807326 | 5.337440e-50 | -8.615850e-47 |
| Msa0691690 | Msa1104210 | 0.815791 | 7.713480e-52 | -8.615850e-47 |
| Msa0691690 | Msa1120810 | 0.831044 | 2.086414e-55 | -8.615850e-47 |
| Msa0691690 | Msa1122820 | 0.815778 | 7.763585e-52 | -8.615850e-47 |
| Msa0691690 | Msa1126830 | 0.801289 | 9.658003e-49 | -8.615850e-47 |
| Msa0691690 | Msa1126850 | 0.841492 | 4.599432e-58 | -8.615850e-47 |
| Msa0691690 | Msa1131560 | 0.809335 | 1.991178e-50 | -8.615850e-47 |
| Msa0691690 | Msa1138870 | 0.801752 | 7.763747e-49 | -8.615850e-47 |
| Msa0691690 | Msa1154490 | 0.824006 | 1.019906e-53 | -8.615850e-47 |
| Msa0691690 | Msa1158230 | 0.818179 | 2.243255e-52 | -8.615850e-47 |
| Msa0691690 | Msa1165780 | 0.821390 | 4.142485e-53 | -8.615850e-47 |
| Msa0691690 | Msa1165960 | 0.825457 | 4.638871e-54 | -8.615850e-47 |
| Msa0691690 | Msa1166870 | 0.828920 | 6.872951e-55 | -8.615850e-47 |
| Msa0691690 | Msa1176980 | 0.804237 | 2.378294e-49 | -8.615850e-47 |
| Msa0691690 | Msa1179950 | 0.802916 | 4.470532e-49 | -8.615850e-47 |
| Msa0691690 | Msa1179980 | 0.823491 | 1.345977e-53 | -8.615850e-47 |
| Msa0691690 | Msa1184370 | 0.819438 | 1.161270e-52 | -8.615850e-47 |
| Msa0691690 | Msa1192850 | 0.826004 | 3.441201e-54 | -8.615850e-47 |
| Msa0691690 | Msa1199710 | 0.806020 | 1.007334e-49 | -8.615850e-47 |
| Msa0691690 | Msa1201810 | 0.815499 | 8.960589e-52 | -8.615850e-47 |
| Msa0691690 | Msa1201830 | 0.827599 | 1.431122e-54 | -8.615850e-47 |
| Msa0691690 | Msa1202580 | 0.827125 | 1.858973e-54 | -8.615850e-47 |
| Msa0691690 | Msa1203880 | 0.804530 | 2.066777e-49 | -8.615850e-47 |
| Msa0691690 | Msa1204850 | 0.807073 | 6.040660e-50 | -8.615850e-47 |
| Msa0691690 | Msa1205480 | 0.811700 | 6.141802e-51 | -8.615850e-47 |
| Msa0691690 | Msa1206650 | 0.803751 | 3.001589e-49 | -8.615850e-47 |
| Msa0691690 | Msa1227690 | 0.823176 | 1.594472e-53 | -8.615850e-47 |
| Msa0691690 | Msa1253810 | 0.804909 | 1.722612e-49 | -8.615850e-47 |
| Msa0691690 | Msa1256770 | 0.826056 | 3.344295e-54 | -8.615850e-47 |
| Msa0691690 | Msa1270620 | 0.823082 | 1.677031e-53 | -8.615850e-47 |
| Msa0691690 | Msa1270690 | 0.823773 | 1.156030e-53 | -8.615850e-47 |
| Msa0691690 | Msa1286510 | 0.802759 | 4.816979e-49 | -8.615850e-47 |
| Msa0691690 | Msa1294840 | 0.815046 | 1.129560e-51 | -8.615850e-47 |
| Msa0691690 | Msa1296300 | 0.805589 | 1.240976e-49 | -8.615850e-47 |
| Msa0691690 | Msa1306990 | 0.808497 | 3.009069e-50 | -8.615850e-47 |
| Msa0691690 | Msa1323990 | 0.821066 | 4.919025e-53 | -8.615850e-47 |
| Msa0691690 | Msa1327490 | 0.829161 | 6.010983e-55 | -8.615850e-47 |
| Msa0691690 | Msa1331250 | 0.812011 | 5.253388e-51 | -8.615850e-47 |
| Msa0691690 | Msa1331710 | 0.838378 | 2.980293e-57 | -8.615850e-47 |
| Msa0691690 | Msa1343290 | 0.801997 | 6.914416e-49 | -8.615850e-47 |
| Msa0691690 | Msa1349570 | 0.822885 | 1.864465e-53 | -8.615850e-47 |
| Msa0691690 | Msa1358430 | 0.819628 | 1.050854e-52 | -8.615850e-47 |
| Msa0691690 | Msa1363330 | 0.800801 | 1.215605e-48 | -8.615850e-47 |
| Msa0691690 | Msa1363860 | 0.813239 | 2.830716e-51 | -8.615850e-47 |
| Msa0691690 | Msa1369190 | 0.816168 | 6.354368e-52 | -8.615850e-47 |
| Msa0691690 | Msa1386600 | 0.800265 | 1.562854e-48 | -8.615850e-47 |
| Msa0691690 | Msa1387190 | 0.800788 | 1.222579e-48 | -8.615850e-47 |
| Msa0691690 | Msa1389850 | 0.801192 | 1.011024e-48 | -8.615850e-47 |
| Msa0691690 | Msa1397940 | 0.860202 | 2.434935e-63 | -8.615850e-47 |
| Msa0691690 | Msa1411950 | 0.805538 | 1.272083e-49 | -8.615850e-47 |
| Msa0691690 | Msa1438050 | 0.820186 | 7.834955e-53 | -8.615850e-47 |
| Msa0691690 | Msa1450280 | 0.811080 | 8.373093e-51 | -8.615850e-47 |
| Msa0691690 | Msa1454680 | 0.803105 | 4.086023e-49 | -8.615850e-47 |
| Msa0126770 | Msa0691690 | 0.817317 | 3.511891e-52 | -8.615850e-47 |
| Msa0126840 | Msa0691690 | 0.825701 | 4.060223e-54 | -8.615850e-47 |
| Msa0127040 | Msa0691690 | 0.830270 | 3.228808e-55 | -8.615850e-47 |
| Msa0127850 | Msa0691690 | 0.813233 | 2.839754e-51 | -8.615850e-47 |
| Msa0145150 | Msa0691690 | 0.808879 | 2.492526e-50 | -8.615850e-47 |
| Msa0159420 | Msa0691690 | 0.825582 | 4.333177e-54 | -8.615850e-47 |
| Msa0165950 | Msa0691690 | 0.829917 | 3.935394e-55 | -8.615850e-47 |
| Msa0166750 | Msa0691690 | 0.804546 | 2.051188e-49 | -8.615850e-47 |
| Msa0167480 | Msa0691690 | 0.811737 | 6.028390e-51 | -8.615850e-47 |
| Msa0169300 | Msa0691690 | 0.832970 | 6.975258e-56 | -8.615850e-47 |
| Msa0171850 | Msa0691690 | 0.806484 | 8.042744e-50 | -8.615850e-47 |
| Msa0174000 | Msa0691690 | 0.829160 | 6.012041e-55 | -8.615850e-47 |
| Msa0180020 | Msa0691690 | 0.801778 | 7.669700e-49 | -8.615850e-47 |
| Msa0183460 | Msa0691690 | 0.825021 | 5.880703e-54 | -8.615850e-47 |
| Msa0226330 | Msa0691690 | 0.836062 | 1.165913e-56 | -8.615850e-47 |
| Msa0226460 | Msa0691690 | 0.801289 | 9.659151e-49 | -8.615850e-47 |
| Msa0231100 | Msa0691690 | 0.827544 | 1.475502e-54 | -8.615850e-47 |
| Msa0231790 | Msa0691690 | 0.818944 | 1.505064e-52 | -8.615850e-47 |
| Msa0236270 | Msa0691690 | 0.804700 | 1.905014e-49 | -8.615850e-47 |
| Msa0389510 | Msa0691690 | 0.802390 | 5.738335e-49 | -8.615850e-47 |
| Msa0414020 | Msa0691690 | 0.807876 | 4.080891e-50 | -8.615850e-47 |
| Msa0416400 | Msa0691690 | 0.802219 | 6.224476e-49 | -8.615850e-47 |
| Msa0419520 | Msa0691690 | 0.822292 | 2.560931e-53 | -8.615850e-47 |
| Msa0431770 | Msa0691690 | 0.801196 | 1.009115e-48 | -8.615850e-47 |
| Msa0432070 | Msa0691690 | 0.814317 | 1.638762e-51 | -8.615850e-47 |
| Msa0443390 | Msa0691690 | 0.812020 | 5.230492e-51 | -8.615850e-47 |
| Msa0458640 | Msa0691690 | 0.829817 | 4.162234e-55 | -8.615850e-47 |
| Msa0458780 | Msa0691690 | 0.812809 | 3.517558e-51 | -8.615850e-47 |
| Msa0465550 | Msa0691690 | 0.810341 | 1.209819e-50 | -8.615850e-47 |
| Msa0478580 | Msa0691690 | 0.811930 | 5.471868e-51 | -8.615850e-47 |
| Msa0241830 | Msa0691690 | 0.804570 | 2.027102e-49 | -8.615850e-47 |
| Msa0244980 | Msa0691690 | 0.810033 | 1.409053e-50 | -8.615850e-47 |
| Msa0245060 | Msa0691690 | 0.818676 | 1.730968e-52 | -8.615850e-47 |
| Msa0251770 | Msa0691690 | 0.814772 | 1.299203e-51 | -8.615850e-47 |
| Msa0259160 | Msa0691690 | 0.800912 | 1.153476e-48 | -8.615850e-47 |
| Msa0262480 | Msa0691690 | 0.833254 | 5.928340e-56 | -8.615850e-47 |
| Msa0269470 | Msa0691690 | 0.814935 | 1.195900e-51 | -8.615850e-47 |
| Msa0275360 | Msa0691690 | 0.800526 | 1.382969e-48 | -8.615850e-47 |
| Msa0280430 | Msa0691690 | 0.801620 | 8.261352e-49 | -8.615850e-47 |
| Msa0291520 | Msa0691690 | 0.817477 | 3.230974e-52 | -8.615850e-47 |
| Msa0296250 | Msa0691690 | 0.803343 | 3.648308e-49 | -8.615850e-47 |
| Msa0296790 | Msa0691690 | 0.814152 | 1.781840e-51 | -8.615850e-47 |
| Msa0296920 | Msa0691690 | 0.814528 | 1.471645e-51 | -8.615850e-47 |
| Msa0300350 | Msa0691690 | 0.823067 | 1.690718e-53 | -8.615850e-47 |
| Msa0304660 | Msa0691690 | 0.804713 | 1.892926e-49 | -8.615850e-47 |
| Msa0331700 | Msa0691690 | 0.800690 | 1.280684e-48 | -8.615850e-47 |
| Msa0335320 | Msa0691690 | -0.804748 | 1.861059e-49 | -8.615850e-47 |
| Msa0337510 | Msa0691690 | 0.802023 | 6.828720e-49 | -8.615850e-47 |
| Msa0358770 | Msa0691690 | 0.823732 | 1.182276e-53 | -8.615850e-47 |
| Msa0510290 | Msa0691690 | 0.807537 | 4.814798e-50 | -8.615850e-47 |
| Msa0511490 | Msa0691690 | 0.807967 | 3.902191e-50 | -8.615850e-47 |
| Msa0526540 | Msa0691690 | 0.804606 | 1.992400e-49 | -8.615850e-47 |
| Msa0550540 | Msa0691690 | 0.806359 | 8.545398e-50 | -8.615850e-47 |
| Msa0550570 | Msa0691690 | 0.821566 | 3.772003e-53 | -8.615850e-47 |
| Msa0565620 | Msa0691690 | -0.803425 | 3.508384e-49 | -8.615850e-47 |
| Msa0580230 | Msa0691690 | 0.808634 | 2.812407e-50 | -8.615850e-47 |
| Msa0581110 | Msa0691690 | 0.801114 | 1.048954e-48 | -8.615850e-47 |
| Msa0581130 | Msa0691690 | 0.831533 | 1.581754e-55 | -8.615850e-47 |
| Msa0590650 | Msa0691690 | 0.800673 | 1.290796e-48 | -8.615850e-47 |
| Msa0593700 | Msa0691690 | 0.820714 | 5.928645e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0691690 | MtrunA17_Chr4g0041421 | 100.000 | 91 | 0 | 0 | 1 | 91 | 1 | 91 | 1.18e-63 | 187 |
| Msa0691690 | MtrunA17_Chr4g0072361 | 45.455 | 66 | 36 | 0 | 15 | 80 | 8 | 73 | 1.33e-17 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0691690 | AT3G59810.3 | 87.912 | 91 | 11 | 0 | 1 | 91 | 1 | 91 | 4.38e-55 | 166 |
| Msa0691690 | AT3G59810.1 | 87.912 | 91 | 11 | 0 | 1 | 91 | 1 | 91 | 4.38e-55 | 166 |
| Msa0691690 | AT3G59810.2 | 87.912 | 91 | 11 | 0 | 1 | 91 | 1 | 91 | 4.38e-55 | 166 |
| Msa0691690 | AT2G43810.2 | 85.714 | 91 | 13 | 0 | 1 | 91 | 1 | 91 | 1.81e-54 | 164 |
| Msa0691690 | AT2G43810.3 | 85.714 | 91 | 13 | 0 | 1 | 91 | 1 | 91 | 1.81e-54 | 164 |
| Msa0691690 | AT2G43810.1 | 85.714 | 91 | 13 | 0 | 1 | 91 | 1 | 91 | 1.81e-54 | 164 |
| Msa0691690 | AT4G30220.1 | 48.485 | 66 | 34 | 0 | 15 | 80 | 8 | 73 | 1.39e-18 | 73.6 |
| Msa0691690 | AT4G30220.2 | 48.485 | 66 | 34 | 0 | 15 | 80 | 16 | 81 | 1.97e-18 | 73.2 |
| Msa0691690 | AT2G14285.1 | 50.000 | 46 | 23 | 0 | 35 | 80 | 1 | 46 | 3.90e-11 | 53.9 |
Find 40 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTCAATGTAGTTTAATTT+TGG | 0.164369 | 4_4:+59987955 | Msa0691690:three_prime_UTR |
| AAATACTTGTTGGCATATTT+TGG | 0.173229 | 4_4:+59987876 | Msa0691690:three_prime_UTR |
| GGTATCCTAGCCTGTCTAGA+TGG | 0.315653 | 4_4:+59987495 | Msa0691690:intron |
| GAGGAAATCAGCTGGAGTTT+TGG | 0.321197 | 4_4:-59984973 | None:intergenic |
| CAAACAGAGGAGTATGTTAA+TGG | 0.355057 | 4_4:+59987540 | Msa0691690:CDS |
| AAGGTACCTTTGCAGCGATA+TGG | 0.363913 | 4_4:-59984786 | None:intergenic |
| TTTGAGTATGAGTGAGGGTT+TGG | 0.369343 | 4_4:-59984717 | None:intergenic |
| CCAGTTTGTAAAATACTTGT+TGG | 0.384253 | 4_4:+59987866 | Msa0691690:three_prime_UTR |
| GCATTCATTCGAGGGAATAA+TGG | 0.408713 | 4_4:+59987588 | Msa0691690:CDS |
| GGAACAGAGAAAAGTGGTTC+AGG | 0.419839 | 4_4:+59984945 | Msa0691690:CDS |
| GGACAGCTGAAGAACAAGTA+TGG | 0.438644 | 4_4:+59987561 | Msa0691690:CDS |
| AGGTACCTTTGCAGCGATAT+GGG | 0.461847 | 4_4:-59984785 | None:intergenic |
| TCATAGTAATTGAGTTGCTA+TGG | 0.481106 | 4_4:+59987814 | Msa0691690:three_prime_UTR |
| GTCTACCACGAATGGATTTG+AGG | 0.510106 | 4_4:-59984992 | None:intergenic |
| GATTTCCTCAAATCCATTCG+TGG | 0.535672 | 4_4:+59984987 | Msa0691690:CDS |
| ATTCATATACCCATCTAGAC+AGG | 0.541417 | 4_4:-59987505 | None:intergenic |
| AATCGAAAACGAGGCGCGAT+AGG | 0.543071 | 4_4:-59984756 | None:intergenic |
| AACCACAGGTCTACCACGAA+TGG | 0.553624 | 4_4:-59985000 | None:intergenic |
| ATGGATTTGAGGAAATCAGC+TGG | 0.557310 | 4_4:-59984981 | None:intergenic |
| TATGGTGATGCATTCATTCG+AGG | 0.561710 | 4_4:+59987579 | Msa0691690:CDS |
| GTATCCTAGCCTGTCTAGAT+GGG | 0.566170 | 4_4:+59987496 | Msa0691690:CDS |
| TTTAGATTGTAAAAGATGAG+TGG | 0.566691 | 4_4:+59984924 | Msa0691690:exon |
| CAAAGAGGACTCTAGCAGAA+GGG | 0.574309 | 4_4:+59987717 | Msa0691690:CDS |
| CGCGACCCATATCGCTGCAA+AGG | 0.580989 | 4_4:+59984780 | Msa0691690:five_prime_UTR |
| GAGTTGAGCTTAACAACCAC+AGG | 0.590065 | 4_4:-59985014 | None:intergenic |
| ATGAGTGGAACAGAGAAAAG+TGG | 0.591203 | 4_4:+59984939 | Msa0691690:CDS |
| GTGGTTGTTAAGCTCAACTC+TGG | 0.591462 | 4_4:+59985017 | Msa0691690:CDS |
| TGGGTATATGAATATTGCAA+TGG | 0.592472 | 4_4:+59987515 | Msa0691690:CDS |
| GCTATGGTTATAATACACTA+AGG | 0.597405 | 4_4:+59987830 | Msa0691690:three_prime_UTR |
| ACGAGGCGCGATAGGAGAGA+AGG | 0.602822 | 4_4:-59984748 | None:intergenic |
| TCAAAGAGGACTCTAGCAGA+AGG | 0.602889 | 4_4:+59987716 | Msa0691690:CDS |
| TGTACATCAGTACGTCAAAG+AGG | 0.604168 | 4_4:+59987702 | Msa0691690:CDS |
| AAAGAGGACTCTAGCAGAAG+GGG | 0.612291 | 4_4:+59987718 | Msa0691690:CDS |
| ATGGTGATGCATTCATTCGA+GGG | 0.615726 | 4_4:+59987580 | Msa0691690:CDS |
| TATACCCATCTAGACAGGCT+AGG | 0.623455 | 4_4:-59987500 | None:intergenic |
| TATTGCAATGGAACAAACAG+AGG | 0.640288 | 4_4:+59987527 | Msa0691690:CDS |
| ATCCATTCGTGGTAGACCTG+TGG | 0.642884 | 4_4:+59984998 | Msa0691690:CDS |
| AACTCTGGTGTTGACTATCG+AGG | 0.657618 | 4_4:+59985032 | Msa0691690:CDS |
| GGGTCGCGAAATCGAAAACG+AGG | 0.687157 | 4_4:-59984765 | None:intergenic |
| CAATTACTATGACAAACATG+AGG | 0.705442 | 4_4:-59987803 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGATTTTTTTTTTTTAAACT+CGG | + | chr4_4:59985204-59985223 | Msa0691690:intron | 10.0% |
| !!! | ATCGAATTTTTATTTTATTT+TGG | + | chr4_4:59986871-59986890 | Msa0691690:intron | 10.0% |
| !! | AATTAACATAACAAAAATCA+CGG | - | chr4_4:59984886-59984905 | None:intergenic | 15.0% |
| !!! | TTTGTTATGTTAATTTTTGA+AGG | + | chr4_4:59984891-59984910 | Msa0691690:intron | 15.0% |
| !!! | TTAATTTTTGAAGGTTTTTT+AGG | + | chr4_4:59984900-59984919 | Msa0691690:intron | 15.0% |
| !!! | TAATTTTTGAAGGTTTTTTA+GGG | + | chr4_4:59984901-59984920 | Msa0691690:intron | 15.0% |
| !! | TAGTAAAAATGAAGTATATT+AGG | + | chr4_4:59985818-59985837 | Msa0691690:intron | 15.0% |
| !! | ATAACTAATTGTTTAGTTAT+TGG | + | chr4_4:59986300-59986319 | Msa0691690:intron | 15.0% |
| !!! | TTTTTTTTTTAAACTCGGTA+TGG | + | chr4_4:59985209-59985228 | Msa0691690:intron | 20.0% |
| !! | TCAAATTTGAATCAATGAAA+AGG | + | chr4_4:59985596-59985615 | Msa0691690:intron | 20.0% |
| !! | TATTCGTTTAGTTATTCAAT+AGG | + | chr4_4:59985889-59985908 | Msa0691690:intron | 20.0% |
| !! | CATAATGTAACAAATATAGA+TGG | - | chr4_4:59986598-59986617 | None:intergenic | 20.0% |
| !!! | AAATGATTTGTCTATTCAAT+TGG | + | chr4_4:59986629-59986648 | Msa0691690:intron | 20.0% |
| !!! | TTTGAAACATTTCAAATAAG+AGG | - | chr4_4:59986785-59986804 | None:intergenic | 20.0% |
| !!! | GTAACTAATCTTTTAGTTAT+TGG | + | chr4_4:59987086-59987105 | Msa0691690:intron | 20.0% |
| !!! | GTAACTAATCTTTTAGTTAT+TGG | + | chr4_4:59987086-59987105 | Msa0691690:intron | 20.0% |
| !!! | ATAATCAATTGATTGTTTCT+TGG | + | chr4_4:59987329-59987348 | Msa0691690:intron | 20.0% |
| !! | AATACAAAAAGTCACATAAT+TGG | - | chr4_4:59987759-59987778 | None:intergenic | 20.0% |
| !! | TAAAAAAGTTTCAGACAAAT+AGG | - | chr4_4:59987783-59987802 | None:intergenic | 20.0% |
| !!! | ACTTCAATGTAGTTTAATTT+TGG | + | chr4_4:59987955-59987974 | Msa0691690:three_prime_UTR | 20.0% |
| ! | TTTAGATTGTAAAAGATGAG+TGG | + | chr4_4:59984924-59984943 | Msa0691690:exon | 25.0% |
| !!! | TGGATTTTGAATTCAAGTTT+AGG | + | chr4_4:59985118-59985137 | Msa0691690:intron | 25.0% |
| ! | TTCACGATAAAAAAACACAA+GGG | - | chr4_4:59985400-59985419 | None:intergenic | 25.0% |
| ! | ATTCACGATAAAAAAACACA+AGG | - | chr4_4:59985401-59985420 | None:intergenic | 25.0% |
| ! | ACACATCAATACTAATTGAA+TGG | - | chr4_4:59985439-59985458 | None:intergenic | 25.0% |
| !! | ATTGAACTCGACTTATATTT+TGG | + | chr4_4:59985678-59985697 | Msa0691690:intron | 25.0% |
| ! | AAGAATTGAGTATTAAAGTG+AGG | + | chr4_4:59985766-59985785 | Msa0691690:intron | 25.0% |
| ! | TATATTAGGAGAAATAAGCA+CGG | + | chr4_4:59985832-59985851 | Msa0691690:intron | 25.0% |
| ! | TAGTAAAAAGTGAATACACT+AGG | + | chr4_4:59986164-59986183 | Msa0691690:intron | 25.0% |
| ! | TAGTAAAAAGTGAATACTCT+AGG | + | chr4_4:59986240-59986259 | Msa0691690:intron | 25.0% |
| ! | AATTGTTTAGTTATTGGACA+AGG | + | chr4_4:59986306-59986325 | Msa0691690:intron | 25.0% |
| ! | ATTGTTTAGTTATTGGACAA+GGG | + | chr4_4:59986307-59986326 | Msa0691690:intron | 25.0% |
| !!! | TATTTGTTATGATCGCATAT+TGG | + | chr4_4:59986553-59986572 | Msa0691690:intron | 25.0% |
| !! | AGATTAGTTACATAAGTTAG+AGG | - | chr4_4:59987077-59987096 | None:intergenic | 25.0% |
| !!! | AAATACTTGTTGGCATATTT+TGG | + | chr4_4:59987876-59987895 | Msa0691690:three_prime_UTR | 25.0% |
| !!! | AAGTTTTTGAGTATGAGTGA+GGG | - | chr4_4:59984725-59984744 | None:intergenic | 30.0% |
| !!! | TAAGTTTTTGAGTATGAGTG+AGG | - | chr4_4:59984726-59984745 | None:intergenic | 30.0% |
| ATAACAAAAATCACGGTGTA+AGG | - | chr4_4:59984879-59984898 | None:intergenic | 30.0% | |
| TTCATCAATTTGCCATTCTA+TGG | + | chr4_4:59985073-59985092 | Msa0691690:intron | 30.0% | |
| ! | ATTTGCCATTCTATGGTTTT+AGG | + | chr4_4:59985080-59985099 | Msa0691690:intron | 30.0% |
| TAATTTGGCATAGTAGGATT+CGG | + | chr4_4:59985317-59985336 | Msa0691690:intron | 30.0% | |
| TCACGATAAAAAAACACAAG+GGG | - | chr4_4:59985399-59985418 | None:intergenic | 30.0% | |
| ! | TTTCTTTTGTCCAAAGCAAA+AGG | - | chr4_4:59985470-59985489 | None:intergenic | 30.0% |
| ! | TGCTTTGGACAAAAGAAAAT+TGG | + | chr4_4:59985472-59985491 | Msa0691690:intron | 30.0% |
| ! | GCTTTGGACAAAAGAAAATT+GGG | + | chr4_4:59985473-59985492 | Msa0691690:intron | 30.0% |
| TCAGAAAAGGCTATAATGTT+TGG | + | chr4_4:59985504-59985523 | Msa0691690:intron | 30.0% | |
| ! | GGCTATAATGTTTGGTTTAA+TGG | + | chr4_4:59985512-59985531 | Msa0691690:intron | 30.0% |
| ! | TTTGGTTTAATGGAAAGAGA+TGG | + | chr4_4:59985522-59985541 | Msa0691690:intron | 30.0% |
| TCGTTTAGTTATTCAATAGG+AGG | + | chr4_4:59985892-59985911 | Msa0691690:intron | 30.0% | |
| CGTTTAGTTATTCAATAGGA+GGG | + | chr4_4:59985893-59985912 | Msa0691690:intron | 30.0% | |
| AAAGAAAAAGTAGGTTTGAC+TGG | + | chr4_4:59985938-59985957 | Msa0691690:intron | 30.0% | |
| ATCACTTAATCTTCTACCAT+TGG | + | chr4_4:59986439-59986458 | Msa0691690:intron | 30.0% | |
| GTTCTTGATTGATCACATAT+TGG | + | chr4_4:59986504-59986523 | Msa0691690:intron | 30.0% | |
| GCGATCATAACAAATATAGA+TGG | - | chr4_4:59986549-59986568 | None:intergenic | 30.0% | |
| TACTGGAAAGAGATAGAATA+TGG | + | chr4_4:59986733-59986752 | Msa0691690:intron | 30.0% | |
| ! | TCTTTTCAATTGCTCAACAT+GGG | - | chr4_4:59986948-59986967 | None:intergenic | 30.0% |
| ! | TTCTTTTCAATTGCTCAACA+TGG | - | chr4_4:59986949-59986968 | None:intergenic | 30.0% |
| ACAAGACAAAGATAGTAAGA+AGG | + | chr4_4:59987005-59987024 | Msa0691690:intron | 30.0% | |
| !! | AAAGAAACTTAGGTTGGATT+AGG | + | chr4_4:59987212-59987231 | Msa0691690:intron | 30.0% |
| !! | AAGAAACTTAGGTTGGATTA+GGG | + | chr4_4:59987213-59987232 | Msa0691690:intron | 30.0% |
| AACACTTCATCTAACACTAT+TGG | + | chr4_4:59987277-59987296 | Msa0691690:intron | 30.0% | |
| TTATTCCAGAATTACCACTT+TGG | - | chr4_4:59987313-59987332 | None:intergenic | 30.0% | |
| !! | AGTTTGGTTCTATCACTTAT+TGG | + | chr4_4:59987379-59987398 | Msa0691690:intron | 30.0% |
| TATCACTTATTGGTGTAGAT+TGG | + | chr4_4:59987389-59987408 | Msa0691690:intron | 30.0% | |
| GTTTCATTATGCTTCTATCT+AGG | + | chr4_4:59987433-59987452 | Msa0691690:intron | 30.0% | |
| ! | AAACTAGGCTCAATTGTTTT+TGG | + | chr4_4:59987461-59987480 | Msa0691690:intron | 30.0% |
| !!! | TTGTTTTTGGTTAATCTTGC+AGG | + | chr4_4:59987474-59987493 | Msa0691690:intron | 30.0% |
| TGGGTATATGAATATTGCAA+TGG | + | chr4_4:59987515-59987534 | Msa0691690:CDS | 30.0% | |
| CAATTACTATGACAAACATG+AGG | - | chr4_4:59987806-59987825 | None:intergenic | 30.0% | |
| ! | TCATAGTAATTGAGTTGCTA+TGG | + | chr4_4:59987814-59987833 | Msa0691690:three_prime_UTR | 30.0% |
| GCTATGGTTATAATACACTA+AGG | + | chr4_4:59987830-59987849 | Msa0691690:three_prime_UTR | 30.0% | |
| ! | CCAACAAGTATTTTACAAAC+TGG | - | chr4_4:59987869-59987888 | None:intergenic | 30.0% |
| CCAGTTTGTAAAATACTTGT+TGG | + | chr4_4:59987866-59987885 | Msa0691690:three_prime_UTR | 30.0% | |
| !!! | CAGAATGTTTTAGCTTAGTT+TGG | + | chr4_4:59987899-59987918 | Msa0691690:three_prime_UTR | 30.0% |
| AGTGACCTAAAACCATAGAA+TGG | - | chr4_4:59985088-59985107 | None:intergenic | 35.0% | |
| !!! | TCTATGGTTTTAGGTCACTT+TGG | + | chr4_4:59985089-59985108 | Msa0691690:intron | 35.0% |
| !! | TTAGGTCACTTTGGAATTTG+TGG | + | chr4_4:59985098-59985117 | Msa0691690:intron | 35.0% |
| ! | AAGTTTAGGTTCACATTCCT+AGG | + | chr4_4:59985132-59985151 | Msa0691690:intron | 35.0% |
| CCTACTATGCCAAATTATGT+GGG | - | chr4_4:59985314-59985333 | None:intergenic | 35.0% | |
| TCCTACTATGCCAAATTATG+TGG | - | chr4_4:59985315-59985334 | None:intergenic | 35.0% | |
| !! | TTTTAGAGAAGCACACTCTA+AGG | + | chr4_4:59985349-59985368 | Msa0691690:intron | 35.0% |
| ! | GTATGTTACACCTTTTGCTT+TGG | + | chr4_4:59985457-59985476 | Msa0691690:intron | 35.0% |
| TTGGGTTCACTAATCAGAAA+AGG | + | chr4_4:59985491-59985510 | Msa0691690:intron | 35.0% | |
| TAATGGAAAGAGATGGAATG+TGG | + | chr4_4:59985529-59985548 | Msa0691690:intron | 35.0% | |
| TATTCAATAGGAGGGAAAGA+AGG | + | chr4_4:59985901-59985920 | Msa0691690:intron | 35.0% | |
| ATTCAATAGGAGGGAAAGAA+GGG | + | chr4_4:59985902-59985921 | Msa0691690:intron | 35.0% | |
| TTGAGGAGGAAAGAAAAAGT+AGG | + | chr4_4:59985929-59985948 | Msa0691690:intron | 35.0% | |
| ACCATTTCATCTTCTACCAT+AGG | + | chr4_4:59986004-59986023 | Msa0691690:intron | 35.0% | |
| TCCTATGGTAGAAGATGAAA+TGG | - | chr4_4:59986008-59986027 | None:intergenic | 35.0% | |
| ACCAGAGTAGTATCACATAT+TGG | + | chr4_4:59986036-59986055 | Msa0691690:intron | 35.0% | |
| ACCAATATGTGATACTACTC+TGG | - | chr4_4:59986040-59986059 | None:intergenic | 35.0% | |
| AGTGAATACACTAGGAGAAA+TGG | + | chr4_4:59986172-59986191 | Msa0691690:intron | 35.0% | |
| ! | AGTGAATACTCTAGGAGAAA+TGG | + | chr4_4:59986248-59986267 | Msa0691690:intron | 35.0% |
| AAGTTGGAATAGGAAGGAAA+TGG | + | chr4_4:59986333-59986352 | Msa0691690:intron | 35.0% | |
| AGTTGGAATAGGAAGGAAAT+GGG | + | chr4_4:59986334-59986353 | Msa0691690:intron | 35.0% | |
| GATCACATATTGGTGTAAGT+TGG | + | chr4_4:59986514-59986533 | Msa0691690:intron | 35.0% | |
| TTATGATCGCATATTGGTGT+AGG | + | chr4_4:59986559-59986578 | Msa0691690:intron | 35.0% | |
| !! | ACATGTTGCACTTTTTGCTT+TGG | + | chr4_4:59986661-59986680 | Msa0691690:intron | 35.0% |
| !! | CATGTTGCACTTTTTGCTTT+GGG | + | chr4_4:59986662-59986681 | Msa0691690:intron | 35.0% |
| ! | TGCTTTGGGCAAAAAAAACT+TGG | + | chr4_4:59986676-59986695 | Msa0691690:intron | 35.0% |
| ! | GCTTTGGGCAAAAAAAACTT+GGG | + | chr4_4:59986677-59986696 | Msa0691690:intron | 35.0% |
| ! | GGCTATAATGTTTGGTTTAC+TGG | + | chr4_4:59986716-59986735 | Msa0691690:intron | 35.0% |
| TGGAAAGAGATAGAATATGG+TGG | + | chr4_4:59986736-59986755 | Msa0691690:intron | 35.0% | |
| ! | AGAGATAGAATATGGTGGAA+AGG | + | chr4_4:59986741-59986760 | Msa0691690:intron | 35.0% |
| !! | TCTCTTCAACTATTTCTGCA+CGG | - | chr4_4:59986899-59986918 | None:intergenic | 35.0% |
| ! | CTTTTCAATTGCTCAACATG+GGG | - | chr4_4:59986947-59986966 | None:intergenic | 35.0% |
| TAAGAAGGTAGTAGTACACT+AGG | + | chr4_4:59987020-59987039 | Msa0691690:intron | 35.0% | |
| AGAGTAGAAGTTGAAACACA+AGG | + | chr4_4:59987112-59987131 | Msa0691690:intron | 35.0% | |
| GAGTAGAAGTTGAAACACAA+GGG | + | chr4_4:59987113-59987132 | Msa0691690:intron | 35.0% | |
| AGAGTAGAAGTTGAAACACA+AGG | + | chr4_4:59987112-59987131 | Msa0691690:intron | 35.0% | |
| GAGTAGAAGTTGAAACACAA+GGG | + | chr4_4:59987113-59987132 | Msa0691690:intron | 35.0% | |
| AAGTTGAAACACAAGGGAAA+GGG | + | chr4_4:59987119-59987138 | Msa0691690:intron | 35.0% | |
| AGGTTGAAAGAAACTTAGGT+TGG | + | chr4_4:59987206-59987225 | Msa0691690:intron | 35.0% | |
| GTTAACCTCTGTTACTAGTT+TGG | + | chr4_4:59987363-59987382 | Msa0691690:intron | 35.0% | |
| TAGAACCAAACTAGTAACAG+AGG | - | chr4_4:59987371-59987390 | None:intergenic | 35.0% | |
| ATTCATATACCCATCTAGAC+AGG | - | chr4_4:59987508-59987527 | None:intergenic | 35.0% | |
| TATTGCAATGGAACAAACAG+AGG | + | chr4_4:59987527-59987546 | Msa0691690:CDS | 35.0% | |
| ! | CAAACAGAGGAGTATGTTAA+TGG | + | chr4_4:59987540-59987559 | Msa0691690:CDS | 35.0% |
| TTTGAGTATGAGTGAGGGTT+TGG | - | chr4_4:59984720-59984739 | None:intergenic | 40.0% | |
| ATGAGTGGAACAGAGAAAAG+TGG | + | chr4_4:59984939-59984958 | Msa0691690:CDS | 40.0% | |
| ATGGATTTGAGGAAATCAGC+TGG | - | chr4_4:59984984-59985003 | None:intergenic | 40.0% | |
| GATTTCCTCAAATCCATTCG+TGG | + | chr4_4:59984987-59985006 | Msa0691690:CDS | 40.0% | |
| TTTAAACTCGGTATGGTCCA+AGG | + | chr4_4:59985216-59985235 | Msa0691690:intron | 40.0% | |
| !! | ATGGACTAGCCCACATAATT+TGG | + | chr4_4:59985302-59985321 | Msa0691690:intron | 40.0% |
| CCCACATAATTTGGCATAGT+AGG | + | chr4_4:59985311-59985330 | Msa0691690:intron | 40.0% | |
| TTCTCAACTGCTCTCACATA+TGG | - | chr4_4:59985748-59985767 | None:intergenic | 40.0% | |
| ATGTGATACTACTCTGGTCA+AGG | - | chr4_4:59986034-59986053 | None:intergenic | 40.0% | |
| TATTGGACAAGGGTAGAAGT+TGG | + | chr4_4:59986317-59986336 | Msa0691690:intron | 40.0% | |
| ACAAGGGTAGAAGTTGGAAT+AGG | + | chr4_4:59986323-59986342 | Msa0691690:intron | 40.0% | |
| GTTGGAATAGGAAGGAAATG+GGG | + | chr4_4:59986335-59986354 | Msa0691690:intron | 40.0% | |
| AAGAACAAGTTCGGTTGGAT+TGG | + | chr4_4:59986373-59986392 | Msa0691690:intron | 40.0% | |
| AGAACAAGTTCGGTTGGATT+GGG | + | chr4_4:59986374-59986393 | Msa0691690:intron | 40.0% | |
| GTGATATTAGTGATCCTCCA+TGG | - | chr4_4:59986424-59986443 | None:intergenic | 40.0% | |
| CCAAACATTATAGCCATTGC+TGG | - | chr4_4:59986711-59986730 | None:intergenic | 40.0% | |
| CCAGCAATGGCTATAATGTT+TGG | + | chr4_4:59986708-59986727 | Msa0691690:intron | 40.0% | |
| GAAGTTGAAACACAAGGGAA+AGG | + | chr4_4:59987118-59987137 | Msa0691690:intron | 40.0% | |
| GTCGAGGTTGAAAGAAACTT+AGG | + | chr4_4:59987202-59987221 | Msa0691690:intron | 40.0% | |
| CAGAATTACCACTTTGGTCA+AGG | - | chr4_4:59987307-59987326 | None:intergenic | 40.0% | |
| CTTGACCAAAGTGGTAATTC+TGG | + | chr4_4:59987305-59987324 | Msa0691690:intron | 40.0% | |
| TCTATCTAGGCACACAAACT+AGG | + | chr4_4:59987446-59987465 | Msa0691690:intron | 40.0% | |
| ! | TATGGTGATGCATTCATTCG+AGG | + | chr4_4:59987579-59987598 | Msa0691690:CDS | 40.0% |
| ! | ATGGTGATGCATTCATTCGA+GGG | + | chr4_4:59987580-59987599 | Msa0691690:CDS | 40.0% |
| GCATTCATTCGAGGGAATAA+TGG | + | chr4_4:59987588-59987607 | Msa0691690:CDS | 40.0% | |
| TGTACATCAGTACGTCAAAG+AGG | + | chr4_4:59987702-59987721 | Msa0691690:CDS | 40.0% | |
| AGGTACCTTTGCAGCGATAT+GGG | - | chr4_4:59984788-59984807 | None:intergenic | 45.0% | |
| ! | AAGGTACCTTTGCAGCGATA+TGG | - | chr4_4:59984789-59984808 | None:intergenic | 45.0% |
| ATTGAGAAGAGCGAGAAGAG+AGG | - | chr4_4:59984817-59984836 | None:intergenic | 45.0% | |
| GGAACAGAGAAAAGTGGTTC+AGG | + | chr4_4:59984945-59984964 | Msa0691690:CDS | 45.0% | |
| ! | GAGGAAATCAGCTGGAGTTT+TGG | - | chr4_4:59984976-59984995 | None:intergenic | 45.0% |
| ! | GTCTACCACGAATGGATTTG+AGG | - | chr4_4:59984995-59985014 | None:intergenic | 45.0% |
| GAGTTGAGCTTAACAACCAC+AGG | - | chr4_4:59985017-59985036 | None:intergenic | 45.0% | |
| GTGGTTGTTAAGCTCAACTC+TGG | + | chr4_4:59985017-59985036 | Msa0691690:CDS | 45.0% | |
| !! | AACTCTGGTGTTGACTATCG+AGG | + | chr4_4:59985032-59985051 | Msa0691690:CDS | 45.0% |
| ACATTCCTAGGTCACAGTTG+TGG | + | chr4_4:59985144-59985163 | Msa0691690:intron | 45.0% | |
| TACTACCACAACTGTGACCT+AGG | - | chr4_4:59985152-59985171 | None:intergenic | 45.0% | |
| ! | CTTTAATTTCCCCTGGACAG+TGG | - | chr4_4:59985265-59985284 | None:intergenic | 45.0% |
| !! | GCTTTGGCTTTAATTTCCCC+TGG | - | chr4_4:59985272-59985291 | None:intergenic | 45.0% |
| AGCCAAAGCTAAGCTCTGTA+TGG | + | chr4_4:59985283-59985302 | Msa0691690:intron | 45.0% | |
| GTCCATACAGAGCTTAGCTT+TGG | - | chr4_4:59985288-59985307 | None:intergenic | 45.0% | |
| TGGAAAGAGATGGAATGTGG+TGG | + | chr4_4:59985532-59985551 | Msa0691690:intron | 45.0% | |
| GAGAAATAAGCACGGCACAA+AGG | + | chr4_4:59985840-59985859 | Msa0691690:intron | 45.0% | |
| AGGGAAAGAAGGGATTGTTG+AGG | + | chr4_4:59985912-59985931 | Msa0691690:intron | 45.0% | |
| GAAAGAAGGGATTGTTGAGG+AGG | + | chr4_4:59985915-59985934 | Msa0691690:intron | 45.0% | |
| AAGTAGGTTTGACTGGAGAC+AGG | + | chr4_4:59985945-59985964 | Msa0691690:intron | 45.0% | |
| ATGGTATGAGTCATCCTCCA+AGG | - | chr4_4:59985989-59986008 | None:intergenic | 45.0% | |
| GCAATCACAGAACAGCAGAA+CGG | + | chr4_4:59986083-59986102 | Msa0691690:intron | 45.0% | |
| CACTAGGAGAAATGGCACAT+AGG | + | chr4_4:59986180-59986199 | Msa0691690:intron | 45.0% | |
| ! | CTCTAGGAGAAATGGCACAT+AGG | + | chr4_4:59986256-59986275 | Msa0691690:intron | 45.0% |
| GGGTAGAAGTTGGAATAGGA+AGG | + | chr4_4:59986327-59986346 | Msa0691690:intron | 45.0% | |
| AGGAAGGAAATGGGGTATAG+TGG | + | chr4_4:59986343-59986362 | Msa0691690:intron | 45.0% | |
| AAGGAAATGGGGTATAGTGG+AGG | + | chr4_4:59986346-59986365 | Msa0691690:intron | 45.0% | |
| GGAGGAGGAAAGAACAAGTT+CGG | + | chr4_4:59986364-59986383 | Msa0691690:intron | 45.0% | |
| GAGGAAAGAACAAGTTCGGT+TGG | + | chr4_4:59986368-59986387 | Msa0691690:intron | 45.0% | |
| GAACAAGTTCGGTTGGATTG+GGG | + | chr4_4:59986375-59986394 | Msa0691690:intron | 45.0% | |
| CTCTGGTCAAGGAAATCCAA+TGG | - | chr4_4:59986458-59986477 | None:intergenic | 45.0% | |
| TTGGATTTCCTTGACCAGAG+TGG | + | chr4_4:59986458-59986477 | Msa0691690:intron | 45.0% | |
| GATCGCATATTGGTGTAGGT+TGG | + | chr4_4:59986563-59986582 | Msa0691690:intron | 45.0% | |
| TTGGGTTCACTAACCAGCAA+TGG | + | chr4_4:59986695-59986714 | Msa0691690:intron | 45.0% | |
| TTGGATCTCCTTGACCAAAG+TGG | + | chr4_4:59987296-59987315 | Msa0691690:intron | 45.0% | |
| GTATCCTAGCCTGTCTAGAT+GGG | + | chr4_4:59987496-59987515 | Msa0691690:CDS | 45.0% | |
| TATACCCATCTAGACAGGCT+AGG | - | chr4_4:59987503-59987522 | None:intergenic | 45.0% | |
| GGACAGCTGAAGAACAAGTA+TGG | + | chr4_4:59987561-59987580 | Msa0691690:CDS | 45.0% | |
| TCAAAGAGGACTCTAGCAGA+AGG | + | chr4_4:59987716-59987735 | Msa0691690:CDS | 45.0% | |
| CAAAGAGGACTCTAGCAGAA+GGG | + | chr4_4:59987717-59987736 | Msa0691690:CDS | 45.0% | |
| AAAGAGGACTCTAGCAGAAG+GGG | + | chr4_4:59987718-59987737 | Msa0691690:CDS | 45.0% | |
| AATCGAAAACGAGGCGCGAT+AGG | - | chr4_4:59984759-59984778 | None:intergenic | 50.0% | |
| ATCCATTCGTGGTAGACCTG+TGG | + | chr4_4:59984998-59985017 | Msa0691690:CDS | 50.0% | |
| AACCACAGGTCTACCACGAA+TGG | - | chr4_4:59985003-59985022 | None:intergenic | 50.0% | |
| GAATTGGTCCCCGGATAAGT+CGG | - | chr4_4:59985243-59985262 | None:intergenic | 50.0% | |
| TTTCCCCTGGACAGTGGAAT+TGG | - | chr4_4:59985259-59985278 | None:intergenic | 50.0% | |
| GGTTCCTAGCCTACACAATC+AGG | + | chr4_4:59985370-59985389 | Msa0691690:intron | 50.0% | |
| GTTGCCTGATTGTGTAGGCT+AGG | - | chr4_4:59985377-59985396 | None:intergenic | 50.0% | |
| AAGGGGTTGCCTGATTGTGT+AGG | - | chr4_4:59985382-59985401 | None:intergenic | 50.0% | |
| GCACGGCACAAAGGATTGTA+TGG | + | chr4_4:59985849-59985868 | Msa0691690:intron | 50.0% | |
| TTTGACTGGAGACAGGAGCA+GGG | + | chr4_4:59985952-59985971 | Msa0691690:intron | 50.0% | |
| CTCTGGTCAAGGAGATCCTA+TGG | - | chr4_4:59986023-59986042 | None:intergenic | 50.0% | |
| CACAGAACAGCAGAACGGAA+AGG | + | chr4_4:59986088-59986107 | Msa0691690:intron | 50.0% | |
| ! | GAAATGGGGTATAGTGGAGG+AGG | + | chr4_4:59986349-59986368 | Msa0691690:intron | 50.0% |
| !! | TTGGATTGGGGAGAGCATCA+GGG | + | chr4_4:59986387-59986406 | Msa0691690:intron | 50.0% |
| TCAGGGTCTCTTGAACACCA+TGG | + | chr4_4:59986404-59986423 | Msa0691690:intron | 50.0% | |
| TTGTTCCAGAGCTACCACTC+TGG | - | chr4_4:59986475-59986494 | None:intergenic | 50.0% | |
| AGGGAAAGGGTAGATAGTCG+AGG | + | chr4_4:59987186-59987205 | Msa0691690:intron | 50.0% | |
| ! | AGGTTGGATTAGGGAGCTTC+AGG | + | chr4_4:59987222-59987241 | Msa0691690:intron | 50.0% |
| ! | GGTTGGATTAGGGAGCTTCA+GGG | + | chr4_4:59987223-59987242 | Msa0691690:intron | 50.0% |
| ACCATCTCCATGGTGTTCGA+GGG | - | chr4_4:59987250-59987269 | None:intergenic | 50.0% | |
| GTTACGAGTCACCATCTCCA+TGG | - | chr4_4:59987260-59987279 | None:intergenic | 50.0% | |
| GGTATCCTAGCCTGTCTAGA+TGG | + | chr4_4:59987495-59987514 | Msa0691690:intron | 50.0% | |
| GGGTCGCGAAATCGAAAACG+AGG | - | chr4_4:59984768-59984787 | None:intergenic | 55.0% | |
| AGCGAGAAGAGAGGACGAGA+AGG | - | chr4_4:59984808-59984827 | None:intergenic | 55.0% | |
| ! | GGTCCAAGGACCGACTTATC+CGG | + | chr4_4:59985230-59985249 | Msa0691690:intron | 55.0% |
| ! | GTCCAAGGACCGACTTATCC+GGG | + | chr4_4:59985231-59985250 | Msa0691690:intron | 55.0% |
| ! | TCCAAGGACCGACTTATCCG+GGG | + | chr4_4:59985232-59985251 | Msa0691690:intron | 55.0% |
| TGGACAGTGGAATTGGTCCC+CGG | - | chr4_4:59985252-59985271 | None:intergenic | 55.0% | |
| GGGACCAATTCCACTGTCCA+GGG | + | chr4_4:59985252-59985271 | Msa0691690:intron | 55.0% | |
| GGACCAATTCCACTGTCCAG+GGG | + | chr4_4:59985253-59985272 | Msa0691690:intron | 55.0% | |
| GTTTGACTGGAGACAGGAGC+AGG | + | chr4_4:59985951-59985970 | Msa0691690:intron | 55.0% | |
| GCAGGGTCTCTCAAACACCT+TGG | + | chr4_4:59985969-59985988 | Msa0691690:intron | 55.0% | |
| GGGTCTCTCAAACACCTTGG+AGG | + | chr4_4:59985972-59985991 | Msa0691690:intron | 55.0% | |
| AGCAGAACGGAAAGGACCTC+TGG | + | chr4_4:59986096-59986115 | Msa0691690:intron | 55.0% | |
| ! | AGCTATGAGTGTCGCACCAG+AGG | - | chr4_4:59986115-59986134 | None:intergenic | 55.0% |
| !! | GTTGGATTGGGGAGAGCATC+AGG | + | chr4_4:59986386-59986405 | Msa0691690:intron | 55.0% |
| GGGTCTCTTGAACACCATGG+AGG | + | chr4_4:59986407-59986426 | Msa0691690:intron | 55.0% | |
| CAGAGCTACCACTCTGGTCA+AGG | - | chr4_4:59986469-59986488 | None:intergenic | 55.0% | |
| CTTGACCAGAGTGGTAGCTC+TGG | + | chr4_4:59986467-59986486 | Msa0691690:intron | 55.0% | |
| TCCCTCGAACACCATGGAGA+TGG | + | chr4_4:59987246-59987265 | Msa0691690:intron | 55.0% | |
| CACCATCTCCATGGTGTTCG+AGG | - | chr4_4:59987251-59987270 | None:intergenic | 55.0% | |
| ACGAGGCGCGATAGGAGAGA+AGG | - | chr4_4:59984751-59984770 | None:intergenic | 60.0% | |
| CGCGACCCATATCGCTGCAA+AGG | + | chr4_4:59984780-59984799 | Msa0691690:five_prime_UTR | 60.0% | |
| TCCCCGGATAAGTCGGTCCT+TGG | - | chr4_4:59985236-59985255 | None:intergenic | 60.0% | |
| GGGGACCAATTCCACTGTCC+AGG | + | chr4_4:59985251-59985270 | Msa0691690:intron | 60.0% | |
| TCAGGGTCCCTCGAACACCA+TGG | + | chr4_4:59987240-59987259 | Msa0691690:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 59984716 | 59987978 | 59984716 | ID=Msa0691690;Name=Msa0691690 |
| chr4_4 | mRNA | 59984716 | 59987978 | 59984716 | ID=Msa0691690-mRNA-1;Parent=Msa0691690;Name=Msa0691690-mRNA-1;_AED=0.12;_eAED=0.12;_QI=112|1|1|1|0.33|0.5|4|233|91 |
| chr4_4 | exon | 59984716 | 59984801 | 59984716 | ID=Msa0691690-mRNA-1:exon:16337;Parent=Msa0691690-mRNA-1 |
| chr4_4 | exon | 59984913 | 59985053 | 59984913 | ID=Msa0691690-mRNA-1:exon:16338;Parent=Msa0691690-mRNA-1 |
| chr4_4 | exon | 59987496 | 59987609 | 59987496 | ID=Msa0691690-mRNA-1:exon:16339;Parent=Msa0691690-mRNA-1 |
| chr4_4 | exon | 59987699 | 59987978 | 59987699 | ID=Msa0691690-mRNA-1:exon:16340;Parent=Msa0691690-mRNA-1 |
| chr4_4 | five_prime_UTR | 59984716 | 59984801 | 59984716 | ID=Msa0691690-mRNA-1:five_prime_utr;Parent=Msa0691690-mRNA-1 |
| chr4_4 | five_prime_UTR | 59984913 | 59984938 | 59984913 | ID=Msa0691690-mRNA-1:five_prime_utr;Parent=Msa0691690-mRNA-1 |
| chr4_4 | CDS | 59984939 | 59985053 | 59984939 | ID=Msa0691690-mRNA-1:cds;Parent=Msa0691690-mRNA-1 |
| chr4_4 | CDS | 59987496 | 59987609 | 59987496 | ID=Msa0691690-mRNA-1:cds;Parent=Msa0691690-mRNA-1 |
| chr4_4 | CDS | 59987699 | 59987745 | 59987699 | ID=Msa0691690-mRNA-1:cds;Parent=Msa0691690-mRNA-1 |
| chr4_4 | three_prime_UTR | 59987746 | 59987978 | 59987746 | ID=Msa0691690-mRNA-1:three_prime_utr;Parent=Msa0691690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
