Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0428310 | XP_003602742.1 | 95.956 | 272 | 10 | 1 | 1 | 271 | 1 | 272 | 0.0 | 530 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0428310 | sp|Q55CU8|PITC_DICDI | 35.437 | 206 | 124 | 4 | 66 | 263 | 73 | 277 | 5.35e-27 | 110 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0428310 | G7J392 | 95.956 | 272 | 10 | 1 | 1 | 271 | 1 | 272 | 0.0 | 530 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005690 | Msa0428310 | 0.801792 | 7.617006e-49 | -8.615850e-47 |
| Msa0032450 | Msa0428310 | 0.802905 | 4.494478e-49 | -8.615850e-47 |
| Msa0033930 | Msa0428310 | 0.813143 | 2.970677e-51 | -8.615850e-47 |
| Msa0039920 | Msa0428310 | 0.814871 | 1.235347e-51 | -8.615850e-47 |
| Msa0040090 | Msa0428310 | 0.801935 | 7.120930e-49 | -8.615850e-47 |
| Msa0047470 | Msa0428310 | 0.808123 | 3.614473e-50 | -8.615850e-47 |
| Msa0057740 | Msa0428310 | 0.826693 | 2.358714e-54 | -8.615850e-47 |
| Msa0087580 | Msa0428310 | 0.803929 | 2.757389e-49 | -8.615850e-47 |
| Msa0096020 | Msa0428310 | 0.841789 | 3.839544e-58 | -8.615850e-47 |
| Msa0096510 | Msa0428310 | 0.811762 | 5.951959e-51 | -8.615850e-47 |
| Msa0100250 | Msa0428310 | 0.814103 | 1.826895e-51 | -8.615850e-47 |
| Msa0103060 | Msa0428310 | 0.825473 | 4.598470e-54 | -8.615850e-47 |
| Msa0116950 | Msa0428310 | 0.835178 | 1.952283e-56 | -8.615850e-47 |
| Msa0134300 | Msa0428310 | 0.802375 | 5.779512e-49 | -8.615850e-47 |
| Msa0158610 | Msa0428310 | 0.801188 | 1.012836e-48 | -8.615850e-47 |
| Msa0160470 | Msa0428310 | 0.804626 | 1.973939e-49 | -8.615850e-47 |
| Msa0180600 | Msa0428310 | 0.820149 | 7.987183e-53 | -8.615850e-47 |
| Msa0188500 | Msa0428310 | 0.801106 | 1.053123e-48 | -8.615850e-47 |
| Msa0197730 | Msa0428310 | 0.810418 | 1.164246e-50 | -8.615850e-47 |
| Msa0210880 | Msa0428310 | 0.827287 | 1.700527e-54 | -8.615850e-47 |
| Msa0230980 | Msa0428310 | 0.833656 | 4.706067e-56 | -8.615850e-47 |
| Msa0231590 | Msa0428310 | 0.824231 | 9.026317e-54 | -8.615850e-47 |
| Msa0373130 | Msa0428310 | 0.807476 | 4.961921e-50 | -8.615850e-47 |
| Msa0376900 | Msa0428310 | 0.806045 | 9.952421e-50 | -8.615850e-47 |
| Msa0378670 | Msa0428310 | 0.804236 | 2.380020e-49 | -8.615850e-47 |
| Msa0378700 | Msa0428310 | 0.820673 | 6.057340e-53 | -8.615850e-47 |
| Msa0387790 | Msa0428310 | 0.806637 | 7.469588e-50 | -8.615850e-47 |
| Msa0390840 | Msa0428310 | 0.800607 | 1.331045e-48 | -8.615850e-47 |
| Msa0419040 | Msa0428310 | 0.825972 | 3.500910e-54 | -8.615850e-47 |
| Msa0421800 | Msa0428310 | 0.815262 | 1.011381e-51 | -8.615850e-47 |
| Msa0423110 | Msa0428310 | 0.822401 | 2.416035e-53 | -8.615850e-47 |
| Msa0427050 | Msa0428310 | 0.802052 | 6.736140e-49 | -8.615850e-47 |
| Msa0428310 | Msa0431940 | 0.808293 | 3.326220e-50 | -8.615850e-47 |
| Msa0428310 | Msa0456480 | 0.839994 | 1.135688e-57 | -8.615850e-47 |
| Msa0428310 | Msa0469270 | 0.803538 | 3.324187e-49 | -8.615850e-47 |
| Msa0428310 | Msa0471890 | 0.806546 | 7.803907e-50 | -8.615850e-47 |
| Msa0428310 | Msa0481050 | 0.803191 | 3.922501e-49 | -8.615850e-47 |
| Msa0428310 | Msa0500490 | 0.804538 | 2.059328e-49 | -8.615850e-47 |
| Msa0428310 | Msa0512310 | 0.804306 | 2.300863e-49 | -8.615850e-47 |
| Msa0428310 | Msa0514260 | 0.820584 | 6.348594e-53 | -8.615850e-47 |
| Msa0428310 | Msa0519060 | 0.934226 | 5.600670e-96 | -8.615850e-47 |
| Msa0428310 | Msa0520810 | 0.800787 | 1.223429e-48 | -8.615850e-47 |
| Msa0428310 | Msa0521940 | -0.831347 | 1.757568e-55 | -8.615850e-47 |
| Msa0428310 | Msa0534380 | 0.802818 | 4.683413e-49 | -8.615850e-47 |
| Msa0428310 | Msa0545230 | 0.813853 | 2.073866e-51 | -8.615850e-47 |
| Msa0428310 | Msa0549330 | 0.805002 | 1.647205e-49 | -8.615850e-47 |
| Msa0428310 | Msa0580540 | 0.819959 | 8.829370e-53 | -8.615850e-47 |
| Msa0428310 | Msa0589540 | 0.806497 | 7.994579e-50 | -8.615850e-47 |
| Msa0428310 | Msa0595780 | 0.802652 | 5.068960e-49 | -8.615850e-47 |
| Msa0428310 | Msa0615850 | 0.802851 | 4.610377e-49 | -8.615850e-47 |
| Msa0428310 | Msa0621780 | 0.803544 | 3.313198e-49 | -8.615850e-47 |
| Msa0428310 | Msa0677110 | 0.804086 | 2.556924e-49 | -8.615850e-47 |
| Msa0428310 | Msa0697600 | 0.805148 | 1.535438e-49 | -8.615850e-47 |
| Msa0428310 | Msa0698900 | 0.811175 | 7.984536e-51 | -8.615850e-47 |
| Msa0428310 | Msa0715510 | -0.829299 | 5.563198e-55 | -8.615850e-47 |
| Msa0428310 | Msa0734760 | 0.833612 | 4.824543e-56 | -8.615850e-47 |
| Msa0428310 | Msa0739610 | 0.803314 | 3.697522e-49 | -8.615850e-47 |
| Msa0428310 | Msa0747900 | 0.814464 | 1.520367e-51 | -8.615850e-47 |
| Msa0428310 | Msa0748980 | 0.869581 | 2.781571e-66 | -8.615850e-47 |
| Msa0428310 | Msa0754350 | 0.825384 | 4.828111e-54 | -8.615850e-47 |
| Msa0428310 | Msa0756440 | 0.832670 | 8.279800e-56 | -8.615850e-47 |
| Msa0428310 | Msa0768490 | 0.801146 | 1.033325e-48 | -8.615850e-47 |
| Msa0428310 | Msa0793100 | 0.814607 | 1.413523e-51 | -8.615850e-47 |
| Msa0428310 | Msa0795710 | 0.803973 | 2.698941e-49 | -8.615850e-47 |
| Msa0428310 | Msa0813630 | 0.827280 | 1.707218e-54 | -8.615850e-47 |
| Msa0428310 | Msa0825520 | 0.856367 | 3.374384e-62 | -8.615850e-47 |
| Msa0428310 | Msa0834160 | 0.810370 | 1.192098e-50 | -8.615850e-47 |
| Msa0428310 | Msa0835550 | 0.831189 | 1.922096e-55 | -8.615850e-47 |
| Msa0428310 | Msa0861560 | 0.801078 | 1.066635e-48 | -8.615850e-47 |
| Msa0428310 | Msa0864730 | 0.849759 | 2.630916e-60 | -8.615850e-47 |
| Msa0428310 | Msa0864750 | 0.848805 | 4.849715e-60 | -8.615850e-47 |
| Msa0428310 | Msa0876030 | 0.826268 | 2.978285e-54 | -8.615850e-47 |
| Msa0428310 | Msa0895860 | 0.807028 | 6.173561e-50 | -8.615850e-47 |
| Msa0428310 | Msa0899730 | 0.827285 | 1.702641e-54 | -8.615850e-47 |
| Msa0428310 | Msa0913120 | 0.813938 | 1.986420e-51 | -8.615850e-47 |
| Msa0428310 | Msa0930950 | 0.823659 | 1.229617e-53 | -8.615850e-47 |
| Msa0428310 | Msa0959790 | 0.812402 | 4.316435e-51 | -8.615850e-47 |
| Msa0428310 | Msa0964650 | 0.814089 | 1.839526e-51 | -8.615850e-47 |
| Msa0428310 | Msa0973890 | 0.814011 | 1.914698e-51 | -8.615850e-47 |
| Msa0428310 | Msa0995090 | 0.800779 | 1.227782e-48 | -8.615850e-47 |
| Msa0428310 | Msa1016110 | 0.807156 | 5.800380e-50 | -8.615850e-47 |
| Msa0428310 | Msa1067710 | 0.822434 | 2.374088e-53 | -8.615850e-47 |
| Msa0428310 | Msa1067910 | 0.827334 | 1.657117e-54 | -8.615850e-47 |
| Msa0428310 | Msa1081850 | 0.804656 | 1.945828e-49 | -8.615850e-47 |
| Msa0428310 | Msa1102200 | 0.844333 | 8.066274e-59 | -8.615850e-47 |
| Msa0428310 | Msa1203860 | 0.813723 | 2.215004e-51 | -8.615850e-47 |
| Msa0428310 | Msa1242990 | 0.821638 | 3.629572e-53 | -8.615850e-47 |
| Msa0428310 | Msa1263590 | 0.806280 | 8.880263e-50 | -8.615850e-47 |
| Msa0428310 | Msa1263670 | 0.800021 | 1.751977e-48 | -8.615850e-47 |
| Msa0428310 | Msa1276110 | 0.806456 | 8.152836e-50 | -8.615850e-47 |
| Msa0428310 | Msa1286910 | 0.819233 | 1.293589e-52 | -8.615850e-47 |
| Msa0428310 | Msa1295220 | 0.805187 | 1.506692e-49 | -8.615850e-47 |
| Msa0428310 | Msa1323920 | 0.808654 | 2.785226e-50 | -8.615850e-47 |
| Msa0428310 | Msa1327040 | 0.812722 | 3.673944e-51 | -8.615850e-47 |
| Msa0428310 | Msa1349360 | 0.815231 | 1.028061e-51 | -8.615850e-47 |
| Msa0428310 | Msa1349640 | 0.830698 | 2.536970e-55 | -8.615850e-47 |
| Msa0428310 | Msa1349850 | 0.821941 | 3.088303e-53 | -8.615850e-47 |
| Msa0428310 | Msa1356730 | 0.813202 | 2.884422e-51 | -8.615850e-47 |
| Msa0428310 | Msa1365210 | 0.815105 | 1.096099e-51 | -8.615850e-47 |
| Msa0428310 | Msa1368660 | 0.801422 | 9.073554e-49 | -8.615850e-47 |
| Msa0428310 | Msa1368980 | 0.801385 | 9.233957e-49 | -8.615850e-47 |
| Msa0428310 | Msa1369180 | 0.804188 | 2.434973e-49 | -8.615850e-47 |
| Msa0428310 | Msa1384620 | 0.858440 | 8.224205e-63 | -8.615850e-47 |
| Msa0428310 | Msa1384980 | 0.815396 | 9.445659e-52 | -8.615850e-47 |
| Msa0428310 | Msa1388520 | 0.800231 | 1.588174e-48 | -8.615850e-47 |
| Msa0428310 | Msa1395580 | 0.827200 | 1.784373e-54 | -8.615850e-47 |
| Msa0428310 | Msa1395640 | 0.823291 | 1.499187e-53 | -8.615850e-47 |
| Msa0428310 | Msa1396550 | -0.811192 | 7.917034e-51 | -8.615850e-47 |
| Msa0428310 | Msa1397110 | 0.810098 | 1.364626e-50 | -8.615850e-47 |
| Msa0428310 | Msa1403900 | 0.813978 | 1.946144e-51 | -8.615850e-47 |
| Msa0428310 | Msa1403950 | 0.832307 | 1.018333e-55 | -8.615850e-47 |
| Msa0428310 | Msa1425540 | 0.805237 | 1.471116e-49 | -8.615850e-47 |
| Msa0428310 | Msa1431240 | 0.801469 | 8.875092e-49 | -8.615850e-47 |
| Msa0428310 | Msa1451780 | 0.804964 | 1.677920e-49 | -8.615850e-47 |
| Msa0428310 | Msa1458920 | 0.807844 | 4.145163e-50 | -8.615850e-47 |
| Msa0428310 | Msa1463500 | 0.815693 | 8.111112e-52 | -8.615850e-47 |
| Msa0251150 | Msa0428310 | 0.804813 | 1.804282e-49 | -8.615850e-47 |
| Msa0270460 | Msa0428310 | 0.844768 | 6.159718e-59 | -8.615850e-47 |
| Msa0309060 | Msa0428310 | 0.834294 | 3.257035e-56 | -8.615850e-47 |
| Msa0336270 | Msa0428310 | 0.812356 | 4.417390e-51 | -8.615850e-47 |
| Msa0341190 | Msa0428310 | 0.806259 | 8.971269e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0428310 | MtrunA17_Chr3g0131581 | 95.956 | 272 | 10 | 1 | 1 | 271 | 1 | 272 | 0.0 | 530 |
| Msa0428310 | MtrunA17_Chr8g0385691 | 75.000 | 232 | 58 | 0 | 40 | 271 | 21 | 252 | 2.47e-134 | 379 |
| Msa0428310 | MtrunA17_Chr8g0385681 | 73.593 | 231 | 61 | 0 | 40 | 270 | 24 | 254 | 5.72e-131 | 371 |
| Msa0428310 | MtrunA17_Chr1g0161441 | 37.975 | 237 | 138 | 4 | 39 | 270 | 5 | 237 | 9.70e-55 | 177 |
| Msa0428310 | MtrunA17_Chr1g0155071 | 31.224 | 237 | 152 | 6 | 34 | 262 | 7 | 240 | 1.23e-29 | 113 |
| Msa0428310 | MtrunA17_Chr4g0058791 | 33.140 | 172 | 113 | 2 | 65 | 235 | 68 | 238 | 2.68e-26 | 103 |
| Msa0428310 | MtrunA17_Chr4g0058811 | 33.129 | 163 | 107 | 2 | 65 | 226 | 70 | 231 | 7.48e-25 | 99.8 |
| Msa0428310 | MtrunA17_Chr7g0254621 | 28.986 | 207 | 131 | 5 | 64 | 262 | 42 | 240 | 2.02e-23 | 97.4 |
| Msa0428310 | MtrunA17_Chr3g0131071 | 30.476 | 210 | 132 | 4 | 66 | 261 | 247 | 456 | 2.50e-22 | 96.3 |
| Msa0428310 | MtrunA17_Chr3g0144891 | 32.389 | 247 | 146 | 8 | 35 | 261 | 62 | 307 | 5.11e-22 | 95.1 |
| Msa0428310 | MtrunA17_Chr3g0141821 | 31.797 | 217 | 129 | 6 | 68 | 266 | 93 | 308 | 1.35e-21 | 94.0 |
| Msa0428310 | MtrunA17_Chr1g0155521 | 29.856 | 278 | 173 | 11 | 10 | 266 | 51 | 327 | 5.93e-21 | 92.0 |
| Msa0428310 | MtrunA17_Chr4g0035361 | 33.019 | 212 | 123 | 7 | 68 | 261 | 1 | 211 | 9.65e-21 | 91.3 |
| Msa0428310 | MtrunA17_Chr1g0205531 | 27.778 | 198 | 137 | 3 | 43 | 235 | 12 | 208 | 3.55e-20 | 89.4 |
| Msa0428310 | MtrunA17_Chr5g0425421 | 28.000 | 175 | 122 | 3 | 64 | 237 | 44 | 215 | 5.82e-20 | 87.8 |
| Msa0428310 | MtrunA17_Chr5g0404711 | 31.535 | 241 | 143 | 8 | 43 | 263 | 50 | 288 | 6.77e-20 | 89.0 |
| Msa0428310 | MtrunA17_Chr7g0236461 | 29.804 | 255 | 150 | 10 | 28 | 261 | 64 | 310 | 6.83e-20 | 89.0 |
| Msa0428310 | MtrunA17_Chr3g0115591 | 27.706 | 231 | 150 | 8 | 40 | 261 | 22 | 244 | 1.40e-19 | 86.7 |
| Msa0428310 | MtrunA17_Chr2g0293201 | 29.524 | 210 | 132 | 6 | 66 | 261 | 142 | 349 | 2.06e-19 | 87.4 |
| Msa0428310 | MtrunA17_Chr8g0385291 | 28.814 | 295 | 169 | 11 | 3 | 261 | 97 | 386 | 3.53e-19 | 86.7 |
| Msa0428310 | MtrunA17_Chr4g0014911 | 27.632 | 304 | 173 | 10 | 2 | 261 | 44 | 344 | 3.58e-19 | 86.7 |
| Msa0428310 | MtrunA17_Chr3g0144911 | 32.093 | 215 | 127 | 7 | 65 | 261 | 107 | 320 | 4.22e-19 | 86.3 |
| Msa0428310 | MtrunA17_Chr8g0373391 | 28.846 | 208 | 141 | 6 | 62 | 265 | 39 | 243 | 4.53e-19 | 84.7 |
| Msa0428310 | MtrunA17_Chr4g0014901 | 29.911 | 224 | 120 | 7 | 63 | 261 | 266 | 477 | 4.89e-19 | 86.7 |
| Msa0428310 | MtrunA17_Chr8g0372651 | 31.507 | 219 | 129 | 7 | 62 | 261 | 73 | 289 | 4.97e-19 | 86.7 |
| Msa0428310 | MtrunA17_Chr4g0035391 | 31.513 | 238 | 143 | 8 | 43 | 261 | 81 | 317 | 6.42e-19 | 86.3 |
| Msa0428310 | MtrunA17_Chr4g0004981 | 28.372 | 215 | 128 | 7 | 66 | 261 | 123 | 330 | 7.64e-18 | 82.8 |
| Msa0428310 | MtrunA17_Chr5g0399151 | 29.515 | 227 | 127 | 5 | 62 | 263 | 109 | 327 | 9.19e-18 | 82.4 |
| Msa0428310 | MtrunA17_Chr3g0080051 | 29.796 | 245 | 151 | 8 | 36 | 261 | 71 | 313 | 6.54e-17 | 80.5 |
| Msa0428310 | MtrunA17_Chr8g0369291 | 29.779 | 272 | 166 | 12 | 10 | 261 | 35 | 301 | 9.23e-17 | 79.7 |
| Msa0428310 | MtrunA17_Chr7g0243541 | 25.000 | 200 | 116 | 3 | 63 | 261 | 111 | 277 | 6.01e-15 | 73.9 |
| Msa0428310 | MtrunA17_Chr4g0035381 | 28.311 | 219 | 136 | 6 | 62 | 261 | 78 | 294 | 2.83e-14 | 72.0 |
| Msa0428310 | MtrunA17_Chr1g0183881 | 28.507 | 221 | 129 | 9 | 61 | 261 | 142 | 353 | 1.48e-13 | 70.1 |
| Msa0428310 | MtrunA17_Chr3g0102691 | 25.822 | 213 | 124 | 7 | 68 | 257 | 33 | 234 | 1.03e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0428310 | AT1G01630.1 | 65.368 | 231 | 80 | 0 | 41 | 271 | 25 | 255 | 1.51e-117 | 337 |
| Msa0428310 | AT1G14820.3 | 38.333 | 240 | 139 | 4 | 36 | 270 | 1 | 236 | 2.36e-49 | 164 |
| Msa0428310 | AT1G14820.2 | 39.815 | 216 | 124 | 3 | 60 | 270 | 9 | 223 | 4.61e-47 | 157 |
| Msa0428310 | AT1G14820.1 | 39.815 | 216 | 124 | 3 | 60 | 270 | 9 | 223 | 4.61e-47 | 157 |
| Msa0428310 | AT4G08690.2 | 30.531 | 226 | 150 | 5 | 40 | 261 | 16 | 238 | 6.06e-29 | 112 |
| Msa0428310 | AT4G08690.1 | 30.531 | 226 | 150 | 5 | 40 | 261 | 16 | 238 | 6.06e-29 | 112 |
| Msa0428310 | AT4G08690.3 | 30.531 | 226 | 150 | 5 | 40 | 261 | 16 | 238 | 6.06e-29 | 112 |
| Msa0428310 | AT1G75170.2 | 30.864 | 243 | 148 | 8 | 31 | 265 | 14 | 244 | 1.08e-26 | 105 |
| Msa0428310 | AT1G75170.1 | 30.864 | 243 | 148 | 8 | 31 | 265 | 14 | 244 | 1.08e-26 | 105 |
| Msa0428310 | AT1G22180.2 | 30.531 | 226 | 150 | 6 | 41 | 262 | 20 | 242 | 5.03e-24 | 99.0 |
| Msa0428310 | AT1G22180.4 | 30.531 | 226 | 150 | 6 | 41 | 262 | 20 | 242 | 5.03e-24 | 99.0 |
| Msa0428310 | AT4G36640.1 | 29.612 | 206 | 138 | 5 | 64 | 265 | 39 | 241 | 1.29e-23 | 97.4 |
| Msa0428310 | AT4G36640.3 | 29.612 | 206 | 138 | 5 | 64 | 265 | 39 | 241 | 1.29e-23 | 97.4 |
| Msa0428310 | AT5G63060.2 | 33.742 | 163 | 106 | 2 | 65 | 226 | 36 | 197 | 6.45e-23 | 94.4 |
| Msa0428310 | AT5G63060.1 | 33.742 | 163 | 106 | 2 | 65 | 226 | 71 | 232 | 1.08e-22 | 94.4 |
| Msa0428310 | AT4G34580.2 | 33.180 | 217 | 125 | 8 | 64 | 261 | 83 | 298 | 7.42e-22 | 95.1 |
| Msa0428310 | AT4G34580.1 | 33.180 | 217 | 125 | 8 | 64 | 261 | 83 | 298 | 7.42e-22 | 95.1 |
| Msa0428310 | AT4G39180.1 | 31.696 | 224 | 134 | 7 | 61 | 266 | 89 | 311 | 5.74e-21 | 92.4 |
| Msa0428310 | AT4G39180.3 | 31.696 | 224 | 134 | 7 | 61 | 266 | 89 | 311 | 5.95e-21 | 92.4 |
| Msa0428310 | AT4G39180.2 | 31.696 | 224 | 134 | 7 | 61 | 266 | 89 | 311 | 5.95e-21 | 92.4 |
| Msa0428310 | AT4G36490.1 | 31.050 | 219 | 130 | 7 | 62 | 261 | 72 | 288 | 1.39e-20 | 91.3 |
| Msa0428310 | AT1G30690.1 | 30.769 | 208 | 133 | 6 | 63 | 261 | 217 | 422 | 2.08e-20 | 90.9 |
| Msa0428310 | AT1G30690.2 | 30.769 | 208 | 133 | 6 | 63 | 261 | 217 | 422 | 2.08e-20 | 90.9 |
| Msa0428310 | AT2G16380.2 | 34.259 | 216 | 122 | 8 | 65 | 261 | 84 | 298 | 3.01e-20 | 90.5 |
| Msa0428310 | AT2G16380.1 | 34.259 | 216 | 122 | 8 | 65 | 261 | 84 | 298 | 3.01e-20 | 90.5 |
| Msa0428310 | AT4G09160.3 | 27.626 | 257 | 157 | 8 | 31 | 261 | 268 | 521 | 4.73e-20 | 90.1 |
| Msa0428310 | AT2G18180.2 | 31.222 | 221 | 131 | 7 | 62 | 263 | 75 | 293 | 4.74e-20 | 89.7 |
| Msa0428310 | AT4G09160.2 | 27.626 | 257 | 157 | 8 | 31 | 261 | 268 | 521 | 4.77e-20 | 90.1 |
| Msa0428310 | AT4G39170.2 | 31.250 | 272 | 165 | 9 | 10 | 261 | 49 | 318 | 5.22e-20 | 89.7 |
| Msa0428310 | AT4G09160.1 | 27.626 | 257 | 157 | 8 | 31 | 261 | 293 | 546 | 5.38e-20 | 89.7 |
| Msa0428310 | AT4G39170.1 | 31.250 | 272 | 165 | 9 | 10 | 261 | 49 | 318 | 5.91e-20 | 89.7 |
| Msa0428310 | AT2G18180.1 | 31.222 | 221 | 131 | 7 | 62 | 263 | 75 | 293 | 6.00e-20 | 89.7 |
| Msa0428310 | AT2G21540.3 | 31.674 | 221 | 132 | 7 | 61 | 263 | 88 | 307 | 1.16e-19 | 88.6 |
| Msa0428310 | AT2G21540.5 | 31.674 | 221 | 132 | 7 | 61 | 263 | 88 | 307 | 1.16e-19 | 88.6 |
| Msa0428310 | AT2G21520.2 | 32.870 | 216 | 124 | 7 | 65 | 261 | 111 | 324 | 1.18e-19 | 89.0 |
| Msa0428310 | AT2G21520.3 | 32.870 | 216 | 124 | 7 | 65 | 261 | 111 | 324 | 1.18e-19 | 89.0 |
| Msa0428310 | AT2G21540.6 | 31.674 | 221 | 132 | 7 | 61 | 263 | 88 | 307 | 1.27e-19 | 88.6 |
| Msa0428310 | AT2G21540.2 | 31.674 | 221 | 132 | 7 | 61 | 263 | 88 | 307 | 1.27e-19 | 88.6 |
| Msa0428310 | AT2G21540.1 | 31.674 | 221 | 132 | 7 | 61 | 263 | 88 | 307 | 1.27e-19 | 88.6 |
| Msa0428310 | AT2G21540.4 | 31.674 | 221 | 132 | 7 | 61 | 263 | 88 | 307 | 1.27e-19 | 88.6 |
| Msa0428310 | AT2G21520.1 | 32.870 | 216 | 124 | 7 | 65 | 261 | 107 | 320 | 1.31e-19 | 88.6 |
| Msa0428310 | AT2G18180.4 | 31.132 | 212 | 125 | 7 | 71 | 263 | 13 | 222 | 2.87e-19 | 87.4 |
| Msa0428310 | AT2G18180.3 | 31.132 | 212 | 125 | 7 | 71 | 263 | 13 | 222 | 3.78e-19 | 87.0 |
| Msa0428310 | AT1G05370.1 | 30.899 | 178 | 122 | 1 | 62 | 239 | 38 | 214 | 8.41e-19 | 85.9 |
| Msa0428310 | AT1G19650.1 | 31.513 | 238 | 143 | 7 | 43 | 261 | 78 | 314 | 8.97e-19 | 86.3 |
| Msa0428310 | AT1G19650.3 | 31.933 | 238 | 142 | 7 | 43 | 261 | 78 | 314 | 1.02e-18 | 85.5 |
| Msa0428310 | AT1G19650.2 | 30.932 | 236 | 142 | 7 | 44 | 261 | 10 | 242 | 1.42e-18 | 85.5 |
| Msa0428310 | AT1G75370.1 | 32.218 | 239 | 140 | 8 | 43 | 261 | 87 | 323 | 4.29e-18 | 84.3 |
| Msa0428310 | AT1G75370.2 | 32.218 | 239 | 140 | 8 | 43 | 261 | 87 | 323 | 6.55e-18 | 83.6 |
| Msa0428310 | AT5G47510.4 | 30.455 | 220 | 134 | 6 | 62 | 263 | 45 | 263 | 4.27e-17 | 80.5 |
| Msa0428310 | AT5G47510.1 | 30.455 | 220 | 134 | 6 | 62 | 263 | 44 | 262 | 4.58e-17 | 80.5 |
| Msa0428310 | AT5G47510.2 | 30.455 | 220 | 134 | 6 | 62 | 263 | 45 | 263 | 5.12e-17 | 80.1 |
| Msa0428310 | AT1G55690.3 | 31.905 | 210 | 123 | 9 | 71 | 261 | 104 | 312 | 5.99e-17 | 80.9 |
| Msa0428310 | AT1G55690.2 | 31.905 | 210 | 123 | 9 | 71 | 261 | 104 | 312 | 7.39e-17 | 80.5 |
| Msa0428310 | AT1G55690.4 | 31.905 | 210 | 123 | 9 | 71 | 261 | 104 | 312 | 7.39e-17 | 80.5 |
| Msa0428310 | AT1G55690.1 | 31.905 | 210 | 123 | 9 | 71 | 261 | 104 | 312 | 7.39e-17 | 80.5 |
| Msa0428310 | AT1G55690.5 | 31.905 | 210 | 123 | 9 | 71 | 261 | 104 | 312 | 7.39e-17 | 80.5 |
| Msa0428310 | AT1G22180.3 | 28.333 | 180 | 123 | 5 | 86 | 262 | 1 | 177 | 1.67e-16 | 77.4 |
| Msa0428310 | AT1G22180.1 | 28.333 | 180 | 123 | 5 | 86 | 262 | 1 | 177 | 1.67e-16 | 77.4 |
| Msa0428310 | AT1G75170.3 | 33.117 | 154 | 91 | 5 | 116 | 262 | 10 | 158 | 3.60e-16 | 75.9 |
| Msa0428310 | AT3G24840.7 | 28.916 | 249 | 143 | 10 | 41 | 263 | 75 | 315 | 4.31e-16 | 78.2 |
| Msa0428310 | AT3G24840.3 | 28.916 | 249 | 143 | 10 | 41 | 263 | 75 | 315 | 4.31e-16 | 78.2 |
| Msa0428310 | AT3G24840.5 | 28.916 | 249 | 143 | 10 | 41 | 263 | 75 | 315 | 4.31e-16 | 78.2 |
| Msa0428310 | AT3G24840.1 | 28.916 | 249 | 143 | 10 | 41 | 263 | 75 | 315 | 4.39e-16 | 78.2 |
| Msa0428310 | AT3G24840.6 | 28.916 | 249 | 143 | 10 | 41 | 263 | 75 | 315 | 4.39e-16 | 78.2 |
| Msa0428310 | AT3G24840.4 | 28.916 | 249 | 143 | 10 | 41 | 263 | 75 | 315 | 4.39e-16 | 78.2 |
| Msa0428310 | AT3G24840.2 | 28.916 | 249 | 143 | 10 | 41 | 263 | 75 | 315 | 4.39e-16 | 78.2 |
| Msa0428310 | AT1G72160.1 | 28.571 | 210 | 134 | 7 | 66 | 261 | 164 | 371 | 5.15e-16 | 77.8 |
| Msa0428310 | AT4G36640.2 | 27.174 | 184 | 127 | 5 | 86 | 265 | 1 | 181 | 6.52e-16 | 75.5 |
| Msa0428310 | AT3G22410.1 | 29.412 | 170 | 116 | 4 | 68 | 235 | 33 | 200 | 1.03e-15 | 76.6 |
| Msa0428310 | AT3G51670.1 | 27.273 | 209 | 137 | 5 | 66 | 261 | 82 | 288 | 1.26e-15 | 76.6 |
| Msa0428310 | AT2G18180.5 | 29.949 | 197 | 117 | 7 | 86 | 263 | 1 | 195 | 7.26e-14 | 71.6 |
| Msa0428310 | AT2G16380.3 | 31.443 | 194 | 114 | 7 | 86 | 261 | 1 | 193 | 2.61e-13 | 69.7 |
| Msa0428310 | AT1G55840.1 | 26.556 | 241 | 132 | 9 | 50 | 257 | 12 | 240 | 3.20e-12 | 66.2 |
| Msa0428310 | AT5G47730.4 | 27.586 | 203 | 128 | 7 | 71 | 257 | 41 | 240 | 4.53e-12 | 65.9 |
| Msa0428310 | AT5G47730.1 | 27.586 | 203 | 128 | 7 | 71 | 257 | 41 | 240 | 4.53e-12 | 65.9 |
| Msa0428310 | AT1G55840.2 | 27.143 | 210 | 120 | 7 | 71 | 257 | 14 | 213 | 5.73e-12 | 65.1 |
| Msa0428310 | AT1G72150.1 | 26.484 | 219 | 132 | 10 | 63 | 261 | 253 | 462 | 2.06e-11 | 64.3 |
Find 68 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTGTCTCTCAATTCTTT+AGG | 0.153731 | 3_2:-79133552 | None:intergenic |
| TGTATCTATTGCAGACATTA+AGG | 0.206776 | 3_2:+79135543 | Msa0428310:CDS |
| AGTTCTCATGAGGCTGATTT+TGG | 0.214151 | 3_2:-79133732 | None:intergenic |
| GCAGCAAAAGCAACAGTTAT+AGG | 0.238428 | 3_2:-79134372 | None:intergenic |
| TAAAAGTGTTACCTTCTTCT+TGG | 0.260617 | 3_2:-79135725 | None:intergenic |
| AATTGTCTCTCAATTCTTTA+GGG | 0.261286 | 3_2:-79133551 | None:intergenic |
| CTTACATGTTTATGAAAGTA+TGG | 0.278705 | 3_2:+79135671 | Msa0428310:CDS |
| TTCTCCATTTCATGTACTTT+AGG | 0.284773 | 3_2:-79134251 | None:intergenic |
| GAATCCAATGCTGAATTTCC+AGG | 0.307712 | 3_2:-79133620 | None:intergenic |
| GAATCTTGTATTGGAACTAA+TGG | 0.319714 | 3_2:-79135930 | None:intergenic |
| TTATTACAAGCAAATAAATA+AGG | 0.338806 | 3_2:+79135962 | Msa0428310:three_prime_UTR |
| ATTGGATTCAAAACATGAAT+TGG | 0.341875 | 3_2:+79133634 | Msa0428310:CDS |
| AAGCCGCGACCCTTCTTCTA+AGG | 0.343766 | 3_2:+79133763 | Msa0428310:CDS |
| AGTCAGCTCCCAGAGATATA+TGG | 0.360943 | 3_2:+79135897 | Msa0428310:CDS |
| ATTAATCAAGAATCTTGTAT+TGG | 0.399694 | 3_2:-79135939 | None:intergenic |
| CATACTTTCATAAACATGTA+AGG | 0.403022 | 3_2:-79135670 | None:intergenic |
| AAAATTCTTGTTCAAGATGA+TGG | 0.403189 | 3_2:+79133677 | Msa0428310:CDS |
| TGTTCCTAAAGTACATGAAA+TGG | 0.412855 | 3_2:+79134247 | Msa0428310:CDS |
| AACAACTTTCCCAGTCTCTC+TGG | 0.415107 | 3_2:-79135634 | None:intergenic |
| GTATCTATTGCAGACATTAA+GGG | 0.415933 | 3_2:+79135544 | Msa0428310:CDS |
| AGTTTGCCTCCATATATCTC+TGG | 0.418208 | 3_2:-79135906 | None:intergenic |
| AATGCTGAATTTCCAGGCTC+AGG | 0.419917 | 3_2:-79133614 | None:intergenic |
| TCAAGATGATGGAGCTTTGA+AGG | 0.435484 | 3_2:+79133688 | Msa0428310:CDS |
| CAAGAAAAGATGTATGTTCA+AGG | 0.455113 | 3_2:+79134330 | Msa0428310:CDS |
| TATTGCAGACATTAAGGGCT+GGG | 0.457362 | 3_2:+79135549 | Msa0428310:CDS |
| ATATAATAATATCATGCATA+TGG | 0.458616 | 3_2:-79133513 | None:intergenic |
| AGATTACTATCCAGAGAGAC+TGG | 0.459793 | 3_2:+79135624 | Msa0428310:CDS |
| TTGTTTGTTACCTTAGAAGA+AGG | 0.464246 | 3_2:-79133773 | None:intergenic |
| GAAACAGTGAGCCCTGAGCC+TGG | 0.469224 | 3_2:+79133602 | Msa0428310:CDS |
| GACAAAGAACAAGGCTAAAG+TGG | 0.473478 | 3_2:-79136142 | None:intergenic |
| ACATATTGTAGTTCTATACT+AGG | 0.481489 | 3_2:+79136073 | Msa0428310:three_prime_UTR |
| TGGTATTGTCATCAATGAAA+GGG | 0.492868 | 3_2:-79135705 | None:intergenic |
| GTGGAAGCATTATACAATCA+AGG | 0.499043 | 3_2:-79136123 | None:intergenic |
| TTGGTATTGTCATCAATGAA+AGG | 0.500676 | 3_2:-79135706 | None:intergenic |
| CTATTGCAGACATTAAGGGC+TGG | 0.521375 | 3_2:+79135548 | Msa0428310:CDS |
| TCGTGATTTAGATGTAGATA+AGG | 0.528241 | 3_2:+79134215 | Msa0428310:CDS |
| TGTTCAAGGAGTGGATAAGA+AGG | 0.530265 | 3_2:+79134344 | Msa0428310:CDS |
| TGGATAGTAATCTTGTAGAA+TGG | 0.535897 | 3_2:-79135614 | None:intergenic |
| ATGCTGAATTTCCAGGCTCA+GGG | 0.541275 | 3_2:-79133613 | None:intergenic |
| TAATGTGACAGGATGCCACC+AGG | 0.550381 | 3_2:+79135508 | Msa0428310:intron |
| TGTTTGTTACCTTAGAAGAA+GGG | 0.551270 | 3_2:-79133772 | None:intergenic |
| TGATGACAATACCAAGAAGA+AGG | 0.551378 | 3_2:+79135714 | Msa0428310:CDS |
| TATGCAAACAGCGACATTCG+CGG | 0.552322 | 3_2:+79135574 | Msa0428310:CDS |
| AGATCGTCAGGTATCTCTGA+AGG | 0.558116 | 3_2:-79134303 | None:intergenic |
| AGCGACATTCGCGGTTACCT+CGG | 0.560343 | 3_2:+79135583 | Msa0428310:CDS |
| TTGTCTCTCAATTCTTTAGG+GGG | 0.564426 | 3_2:-79133549 | None:intergenic |
| TGAGCCTGGAAATTCAGCAT+TGG | 0.570238 | 3_2:+79133616 | Msa0428310:CDS |
| GTTTGCCTCCATATATCTCT+GGG | 0.573143 | 3_2:-79135905 | None:intergenic |
| AGAAAATCATTTGTTCCAAG+TGG | 0.582982 | 3_2:+79134270 | Msa0428310:CDS |
| ATTGTCTCTCAATTCTTTAG+GGG | 0.598264 | 3_2:-79133550 | None:intergenic |
| AAAGATGTATGTTCAAGGAG+TGG | 0.599654 | 3_2:+79134335 | Msa0428310:CDS |
| TTACCTTAGAAGAAGGGTCG+CGG | 0.603865 | 3_2:-79133766 | None:intergenic |
| ATTGCAGACATTAAGGGCTG+GGG | 0.606164 | 3_2:+79135550 | Msa0428310:CDS |
| GATCGTCAGGTATCTCTGAA+GGG | 0.611116 | 3_2:-79134302 | None:intergenic |
| TCATAAACATGTAAGGTGCA+TGG | 0.614836 | 3_2:-79135663 | None:intergenic |
| ATCGTCAGGTATCTCTGAAG+GGG | 0.622595 | 3_2:-79134301 | None:intergenic |
| GAAGGGGATACAGAACCACT+TGG | 0.629494 | 3_2:-79134285 | None:intergenic |
| TTTCAACAAGAGTTCTCATG+AGG | 0.631501 | 3_2:-79133742 | None:intergenic |
| AATGTGACAGGATGCCACCA+GGG | 0.634560 | 3_2:+79135509 | Msa0428310:intron |
| GATTACTATCCAGAGAGACT+GGG | 0.647177 | 3_2:+79135625 | Msa0428310:CDS |
| TTGGCTAAAGAAGAAACCAA+GGG | 0.653928 | 3_2:+79133653 | Msa0428310:CDS |
| GTTCAAGGAGTGGATAAGAA+GGG | 0.656937 | 3_2:+79134345 | Msa0428310:CDS |
| ATTGGCTAAAGAAGAAACCA+AGG | 0.661306 | 3_2:+79133652 | Msa0428310:CDS |
| CAGCTCCCAGAGATATATGG+AGG | 0.670836 | 3_2:+79135900 | Msa0428310:CDS |
| TTTATAGCAGACAAAGAACA+AGG | 0.673792 | 3_2:-79136151 | None:intergenic |
| ATGTGACAGGATGCCACCAG+GGG | 0.685775 | 3_2:+79135510 | Msa0428310:intron |
| TGGCTAAAGAAGAAACCAAG+GGG | 0.720399 | 3_2:+79133654 | Msa0428310:CDS |
| GTAGAATGGTTAGAGCACCG+AGG | 0.822792 | 3_2:-79135600 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAATACAAAATTTATGA+TGG | + | chr3_2:79134066-79134085 | Msa0428310:intron | 10.0% |
| !!! | GTTATTTTTTTAATTCTAAA+AGG | + | chr3_2:79134893-79134912 | Msa0428310:intron | 10.0% |
| !!! | TTCTTTATAAAATTTGTTTT+AGG | + | chr3_2:79134917-79134936 | Msa0428310:intron | 10.0% |
| !! | ATATAATAATATCATGCATA+TGG | - | chr3_2:79133516-79133535 | None:intergenic | 15.0% |
| !!! | TTCTAAAAAAGTCAAATTTT+GGG | - | chr3_2:79134000-79134019 | None:intergenic | 15.0% |
| !!! | TTTCTAAAAAAGTCAAATTT+TGG | - | chr3_2:79134001-79134020 | None:intergenic | 15.0% |
| !!! | TTTTTTCGAACTAAATTTTT+TGG | + | chr3_2:79134036-79134055 | Msa0428310:intron | 15.0% |
| !!! | AAACATTTTCAAAACAAAAA+TGG | + | chr3_2:79134396-79134415 | Msa0428310:CDS | 15.0% |
| !!! | AAATTTATCTTTTTTTACAC+AGG | - | chr3_2:79135121-79135140 | None:intergenic | 15.0% |
| !!! | ATAAATATTTTTTGTGTTAC+AGG | + | chr3_2:79135326-79135345 | Msa0428310:intron | 15.0% |
| !!! | TAAATATTTTTTGTGTTACA+GGG | + | chr3_2:79135327-79135346 | Msa0428310:intron | 15.0% |
| !! | TTATTACAAGCAAATAAATA+AGG | + | chr3_2:79135962-79135981 | Msa0428310:three_prime_UTR | 15.0% |
| !!! | TTTTGATAAAACAGTGATAA+CGG | + | chr3_2:79133837-79133856 | Msa0428310:intron | 20.0% |
| !!! | TTTTCAAAACAAAAATGGTT+TGG | + | chr3_2:79134401-79134420 | Msa0428310:CDS | 20.0% |
| !!! | AACTAAATTGACTTATTTTG+AGG | - | chr3_2:79134730-79134749 | None:intergenic | 20.0% |
| !! | CTTATGTCTAAATTAACAAA+AGG | - | chr3_2:79135270-79135289 | None:intergenic | 20.0% |
| !! | ATGCATATACAGTTTATATT+TGG | + | chr3_2:79135438-79135457 | Msa0428310:intron | 20.0% |
| !! | ATTAATCAAGAATCTTGTAT+TGG | - | chr3_2:79135942-79135961 | None:intergenic | 20.0% |
| ! | AATTGTCTCTCAATTCTTTA+GGG | - | chr3_2:79133554-79133573 | None:intergenic | 25.0% |
| !!! | TCATTTTTTCAACAAGAGAA+TGG | + | chr3_2:79133580-79133599 | Msa0428310:exon | 25.0% |
| ! | ATTGGATTCAAAACATGAAT+TGG | + | chr3_2:79133634-79133653 | Msa0428310:CDS | 25.0% |
| ! | AAAATTCTTGTTCAAGATGA+TGG | + | chr3_2:79133677-79133696 | Msa0428310:CDS | 25.0% |
| ! | ATAGAACAAAACAAACATCA+TGG | - | chr3_2:79134092-79134111 | None:intergenic | 25.0% |
| !!! | ATTAGTTTGTTAACCATAAG+AGG | - | chr3_2:79134490-79134509 | None:intergenic | 25.0% |
| ! | CTAATATGTGAAGTTATGTT+TGG | + | chr3_2:79134505-79134524 | Msa0428310:intron | 25.0% |
| ! | TTCCATAAATTCTCCAAAAT+AGG | + | chr3_2:79134624-79134643 | Msa0428310:intron | 25.0% |
| ! | TCCATAAATTCTCCAAAATA+GGG | + | chr3_2:79134625-79134644 | Msa0428310:intron | 25.0% |
| !!! | AAAATTTGTTTTAGGCATCT+TGG | + | chr3_2:79134925-79134944 | Msa0428310:intron | 25.0% |
| ! | AATAAGCTGAAAACAACTTA+TGG | - | chr3_2:79135058-79135077 | None:intergenic | 25.0% |
| !!! | ATTAATTTGTTTATCCCAAC+AGG | + | chr3_2:79135213-79135232 | Msa0428310:intron | 25.0% |
| !! | TATGTTGTTTATCCAAACAA+TGG | + | chr3_2:79135296-79135315 | Msa0428310:intron | 25.0% |
| ! | TGCATGAATTAATTAATGAG+TGG | - | chr3_2:79135400-79135419 | None:intergenic | 25.0% |
| ! | AACTTTACAATTCTTCTTAC+TGG | - | chr3_2:79135474-79135493 | None:intergenic | 25.0% |
| ! | CATACTTTCATAAACATGTA+AGG | - | chr3_2:79135673-79135692 | None:intergenic | 25.0% |
| ! | CTTACATGTTTATGAAAGTA+TGG | + | chr3_2:79135671-79135690 | Msa0428310:CDS | 25.0% |
| ! | TTTGAAAATTGAGATGTTCT+AGG | + | chr3_2:79135787-79135806 | Msa0428310:intron | 25.0% |
| !! | ACATATTGTAGTTCTATACT+AGG | + | chr3_2:79136073-79136092 | Msa0428310:three_prime_UTR | 25.0% |
| ATTGTCTCTCAATTCTTTAG+GGG | - | chr3_2:79133553-79133572 | None:intergenic | 30.0% | |
| CAATTGTCTCTCAATTCTTT+AGG | - | chr3_2:79133555-79133574 | None:intergenic | 30.0% | |
| ! | TGTTTGTTACCTTAGAAGAA+GGG | - | chr3_2:79133775-79133794 | None:intergenic | 30.0% |
| ! | TTGTTTGTTACCTTAGAAGA+AGG | - | chr3_2:79133776-79133795 | None:intergenic | 30.0% |
| GTTGTAGTTGCAAAAAAAAG+TGG | - | chr3_2:79133873-79133892 | None:intergenic | 30.0% | |
| !! | ATTACTATGTTGTACCGATT+TGG | + | chr3_2:79133942-79133961 | Msa0428310:intron | 30.0% |
| AGTGAAAAACAGATCCAAAT+CGG | - | chr3_2:79133959-79133978 | None:intergenic | 30.0% | |
| !! | GTTCTATTACAGTACTGATT+AGG | + | chr3_2:79134105-79134124 | Msa0428310:intron | 30.0% |
| TAGGTAGCAAATAGTTAGAT+TGG | + | chr3_2:79134130-79134149 | Msa0428310:intron | 30.0% | |
| TCGTGATTTAGATGTAGATA+AGG | + | chr3_2:79134215-79134234 | Msa0428310:CDS | 30.0% | |
| TGTTCCTAAAGTACATGAAA+TGG | + | chr3_2:79134247-79134266 | Msa0428310:CDS | 30.0% | |
| TTCTCCATTTCATGTACTTT+AGG | - | chr3_2:79134254-79134273 | None:intergenic | 30.0% | |
| AGAAAATCATTTGTTCCAAG+TGG | + | chr3_2:79134270-79134289 | Msa0428310:CDS | 30.0% | |
| CAAGAAAAGATGTATGTTCA+AGG | + | chr3_2:79134330-79134349 | Msa0428310:CDS | 30.0% | |
| !! | ACCCTATTTTGGAGAATTTA+TGG | - | chr3_2:79134629-79134648 | None:intergenic | 30.0% |
| ! | AGACCTCATATATATCCTTT+TGG | + | chr3_2:79134810-79134829 | Msa0428310:intron | 30.0% |
| AGACCAAAAGGATATATATG+AGG | - | chr3_2:79134816-79134835 | None:intergenic | 30.0% | |
| GATTTGAACTTAAGACCAAA+AGG | - | chr3_2:79134828-79134847 | None:intergenic | 30.0% | |
| !! | TTGGTCTTAAGTTCAAATCT+TGG | + | chr3_2:79134829-79134848 | Msa0428310:intron | 30.0% |
| AATAAGTCAATCCAAACACT+GGG | - | chr3_2:79134964-79134983 | None:intergenic | 30.0% | |
| AAATAAGTCAATCCAAACAC+TGG | - | chr3_2:79134965-79134984 | None:intergenic | 30.0% | |
| TAAACTCATGTGAGACTATT+TGG | + | chr3_2:79135002-79135021 | Msa0428310:intron | 30.0% | |
| AAACTCATGTGAGACTATTT+GGG | + | chr3_2:79135003-79135022 | Msa0428310:intron | 30.0% | |
| ! | GTTTTCATAAACTACCTGTT+GGG | - | chr3_2:79135230-79135249 | None:intergenic | 30.0% |
| ! | TGTTTTCATAAACTACCTGT+TGG | - | chr3_2:79135231-79135250 | None:intergenic | 30.0% |
| TGTATCTATTGCAGACATTA+AGG | + | chr3_2:79135543-79135562 | Msa0428310:CDS | 30.0% | |
| GTATCTATTGCAGACATTAA+GGG | + | chr3_2:79135544-79135563 | Msa0428310:CDS | 30.0% | |
| TGGATAGTAATCTTGTAGAA+TGG | - | chr3_2:79135617-79135636 | None:intergenic | 30.0% | |
| TGGTATTGTCATCAATGAAA+GGG | - | chr3_2:79135708-79135727 | None:intergenic | 30.0% | |
| TTGGTATTGTCATCAATGAA+AGG | - | chr3_2:79135709-79135728 | None:intergenic | 30.0% | |
| !! | TAAAAGTGTTACCTTCTTCT+TGG | - | chr3_2:79135728-79135747 | None:intergenic | 30.0% |
| GAATCTTGTATTGGAACTAA+TGG | - | chr3_2:79135933-79135952 | None:intergenic | 30.0% | |
| TTTATAGCAGACAAAGAACA+AGG | - | chr3_2:79136154-79136173 | None:intergenic | 30.0% | |
| TTGTCTCTCAATTCTTTAGG+GGG | - | chr3_2:79133552-79133571 | None:intergenic | 35.0% | |
| ATTGGCTAAAGAAGAAACCA+AGG | + | chr3_2:79133652-79133671 | Msa0428310:CDS | 35.0% | |
| TTGGCTAAAGAAGAAACCAA+GGG | + | chr3_2:79133653-79133672 | Msa0428310:CDS | 35.0% | |
| ! | TTGAACAAGAATTTTCCCCT+TGG | - | chr3_2:79133672-79133691 | None:intergenic | 35.0% |
| TTTCAACAAGAGTTCTCATG+AGG | - | chr3_2:79133745-79133764 | None:intergenic | 35.0% | |
| ! | CTAATCTTGAACAAAGTGCT+AGG | - | chr3_2:79133907-79133926 | None:intergenic | 35.0% |
| !! | TTACAGTACTGATTAGGCTT+AGG | + | chr3_2:79134111-79134130 | Msa0428310:intron | 35.0% |
| TGGAATTGAATTGAGCTTGA+TGG | + | chr3_2:79134150-79134169 | Msa0428310:intron | 35.0% | |
| GGAATTGAATTGAGCTTGAT+GGG | + | chr3_2:79134151-79134170 | Msa0428310:intron | 35.0% | |
| AAAGATGTATGTTCAAGGAG+TGG | + | chr3_2:79134335-79134354 | Msa0428310:CDS | 35.0% | |
| CAACTAATAGCATCTCAAGT+GGG | - | chr3_2:79134452-79134471 | None:intergenic | 35.0% | |
| ACAACTAATAGCATCTCAAG+TGG | - | chr3_2:79134453-79134472 | None:intergenic | 35.0% | |
| CAATGCTTGAAATCCTCTTA+TGG | + | chr3_2:79134474-79134493 | Msa0428310:intron | 35.0% | |
| ATGTAGTTGTGAGATCGTTT+AGG | + | chr3_2:79134550-79134569 | Msa0428310:intron | 35.0% | |
| AGGTTTAAACTTCGGGATTT+AGG | + | chr3_2:79134691-79134710 | Msa0428310:intron | 35.0% | |
| GGTTTAAACTTCGGGATTTA+GGG | + | chr3_2:79134692-79134711 | Msa0428310:intron | 35.0% | |
| AGACTATTTGGGAGAGTTTA+AGG | + | chr3_2:79135014-79135033 | Msa0428310:intron | 35.0% | |
| TTTATCGTTGAGCCATTGTT+TGG | - | chr3_2:79135311-79135330 | None:intergenic | 35.0% | |
| TCATAAACATGTAAGGTGCA+TGG | - | chr3_2:79135666-79135685 | None:intergenic | 35.0% | |
| TGATGACAATACCAAGAAGA+AGG | + | chr3_2:79135714-79135733 | Msa0428310:CDS | 35.0% | |
| !! | GTGGAAGCATTATACAATCA+AGG | - | chr3_2:79136126-79136145 | None:intergenic | 35.0% |
| GAATCCAATGCTGAATTTCC+AGG | - | chr3_2:79133623-79133642 | None:intergenic | 40.0% | |
| TGGCTAAAGAAGAAACCAAG+GGG | + | chr3_2:79133654-79133673 | Msa0428310:CDS | 40.0% | |
| !! | TCAAGATGATGGAGCTTTGA+AGG | + | chr3_2:79133688-79133707 | Msa0428310:CDS | 40.0% |
| !! | AGTTCTCATGAGGCTGATTT+TGG | - | chr3_2:79133735-79133754 | None:intergenic | 40.0% |
| ! | TTTTCTTGTGCAAGATCGTC+AGG | - | chr3_2:79134318-79134337 | None:intergenic | 40.0% |
| TGTTCAAGGAGTGGATAAGA+AGG | + | chr3_2:79134344-79134363 | Msa0428310:CDS | 40.0% | |
| GTTCAAGGAGTGGATAAGAA+GGG | + | chr3_2:79134345-79134364 | Msa0428310:CDS | 40.0% | |
| GCAGCAAAAGCAACAGTTAT+AGG | - | chr3_2:79134375-79134394 | None:intergenic | 40.0% | |
| TCTCCAAAATAGGGTCTGTT+TGG | + | chr3_2:79134634-79134653 | Msa0428310:intron | 40.0% | |
| ! | TGTCCAAACAGACCCTATTT+TGG | - | chr3_2:79134640-79134659 | None:intergenic | 40.0% |
| AAAATAGGGTCTGTTTGGAC+AGG | + | chr3_2:79134639-79134658 | Msa0428310:intron | 40.0% | |
| AAATAGGGTCTGTTTGGACA+GGG | + | chr3_2:79134640-79134659 | Msa0428310:intron | 40.0% | |
| AAGTTTAAACCTTGCTTGGG+TGG | - | chr3_2:79134683-79134702 | None:intergenic | 40.0% | |
| CCGAAGTTTAAACCTTGCTT+GGG | - | chr3_2:79134686-79134705 | None:intergenic | 40.0% | |
| CCCAAGCAAGGTTTAAACTT+CGG | + | chr3_2:79134683-79134702 | Msa0428310:intron | 40.0% | |
| CCAAGCAAGGTTTAAACTTC+GGG | + | chr3_2:79134684-79134703 | Msa0428310:intron | 40.0% | |
| AGCTTACCCAATAATGTGAC+AGG | + | chr3_2:79135497-79135516 | Msa0428310:intron | 40.0% | |
| TGGCATCCTGTCACATTATT+GGG | - | chr3_2:79135506-79135525 | None:intergenic | 40.0% | |
| ! | GATACAAACTTTTCTTCCCC+TGG | - | chr3_2:79135529-79135548 | None:intergenic | 40.0% |
| TATTGCAGACATTAAGGGCT+GGG | + | chr3_2:79135549-79135568 | Msa0428310:CDS | 40.0% | |
| AGATTACTATCCAGAGAGAC+TGG | + | chr3_2:79135624-79135643 | Msa0428310:CDS | 40.0% | |
| GATTACTATCCAGAGAGACT+GGG | + | chr3_2:79135625-79135644 | Msa0428310:CDS | 40.0% | |
| GTTTGCCTCCATATATCTCT+GGG | - | chr3_2:79135908-79135927 | None:intergenic | 40.0% | |
| AGTTTGCCTCCATATATCTC+TGG | - | chr3_2:79135909-79135928 | None:intergenic | 40.0% | |
| GACAAAGAACAAGGCTAAAG+TGG | - | chr3_2:79136145-79136164 | None:intergenic | 40.0% | |
| ATGCTGAATTTCCAGGCTCA+GGG | - | chr3_2:79133616-79133635 | None:intergenic | 45.0% | |
| AATGCTGAATTTCCAGGCTC+AGG | - | chr3_2:79133617-79133636 | None:intergenic | 45.0% | |
| TGAGCCTGGAAATTCAGCAT+TGG | + | chr3_2:79133616-79133635 | Msa0428310:CDS | 45.0% | |
| TTACCTTAGAAGAAGGGTCG+CGG | - | chr3_2:79133769-79133788 | None:intergenic | 45.0% | |
| ! | TTGAATTGAGCTTGATGGGC+AGG | + | chr3_2:79134155-79134174 | Msa0428310:intron | 45.0% |
| ! | ATCGTCAGGTATCTCTGAAG+GGG | - | chr3_2:79134304-79134323 | None:intergenic | 45.0% |
| GATCGTCAGGTATCTCTGAA+GGG | - | chr3_2:79134305-79134324 | None:intergenic | 45.0% | |
| AGATCGTCAGGTATCTCTGA+AGG | - | chr3_2:79134306-79134325 | None:intergenic | 45.0% | |
| CCCGAAGTTTAAACCTTGCT+TGG | - | chr3_2:79134687-79134706 | None:intergenic | 45.0% | |
| ! | TTTTAGGCATCTTGGCGTGT+TGG | + | chr3_2:79134933-79134952 | Msa0428310:intron | 45.0% |
| TTTAGGCATCTTGGCGTGTT+GGG | + | chr3_2:79134934-79134953 | Msa0428310:intron | 45.0% | |
| AGTCAATCCAAACACTGGGT+CGG | - | chr3_2:79134960-79134979 | None:intergenic | 45.0% | |
| GTGGCATCCTGTCACATTAT+TGG | - | chr3_2:79135507-79135526 | None:intergenic | 45.0% | |
| ! | ACAAACTTTTCTTCCCCTGG+TGG | - | chr3_2:79135526-79135545 | None:intergenic | 45.0% |
| CTATTGCAGACATTAAGGGC+TGG | + | chr3_2:79135548-79135567 | Msa0428310:CDS | 45.0% | |
| ATTGCAGACATTAAGGGCTG+GGG | + | chr3_2:79135550-79135569 | Msa0428310:CDS | 45.0% | |
| TATGCAAACAGCGACATTCG+CGG | + | chr3_2:79135574-79135593 | Msa0428310:CDS | 45.0% | |
| AACAACTTTCCCAGTCTCTC+TGG | - | chr3_2:79135637-79135656 | None:intergenic | 45.0% | |
| AGTCAGCTCCCAGAGATATA+TGG | + | chr3_2:79135897-79135916 | Msa0428310:CDS | 45.0% | |
| ! | AATTGAGCTTGATGGGCAGG+AGG | + | chr3_2:79134158-79134177 | Msa0428310:intron | 50.0% |
| GAAGGGGATACAGAACCACT+TGG | - | chr3_2:79134288-79134307 | None:intergenic | 50.0% | |
| TAAACCTTGCTTGGGTGGCT+TGG | - | chr3_2:79134678-79134697 | None:intergenic | 50.0% | |
| TAATGTGACAGGATGCCACC+AGG | + | chr3_2:79135508-79135527 | Msa0428310:intron | 50.0% | |
| AATGTGACAGGATGCCACCA+GGG | + | chr3_2:79135509-79135528 | Msa0428310:intron | 50.0% | |
| !! | GTAGAATGGTTAGAGCACCG+AGG | - | chr3_2:79135603-79135622 | None:intergenic | 50.0% |
| CAGCTCCCAGAGATATATGG+AGG | + | chr3_2:79135900-79135919 | Msa0428310:CDS | 50.0% | |
| AAGCCGCGACCCTTCTTCTA+AGG | + | chr3_2:79133763-79133782 | Msa0428310:CDS | 55.0% | |
| ATGTGACAGGATGCCACCAG+GGG | + | chr3_2:79135510-79135529 | Msa0428310:intron | 55.0% | |
| AGCGACATTCGCGGTTACCT+CGG | + | chr3_2:79135583-79135602 | Msa0428310:CDS | 55.0% | |
| GAAACAGTGAGCCCTGAGCC+TGG | + | chr3_2:79133602-79133621 | Msa0428310:CDS | 60.0% | |
| AGGGTCTGTTTGGACAGGGC+CGG | + | chr3_2:79134644-79134663 | Msa0428310:intron | 60.0% | |
| TGTTGGGCCGACCCAGTGTT+TGG | + | chr3_2:79134950-79134969 | Msa0428310:intron | 60.0% | |
| TTTGGACAGGGCCGGCCCAA+GGG | + | chr3_2:79134652-79134671 | Msa0428310:intron | 65.0% | |
| ! | GCTTGGGTGGCTTGGCCCTT+GGG | - | chr3_2:79134670-79134689 | None:intergenic | 65.0% |
| ! | TGCTTGGGTGGCTTGGCCCT+TGG | - | chr3_2:79134671-79134690 | None:intergenic | 65.0% |
| AGGGCCAAGCCACCCAAGCA+AGG | + | chr3_2:79134671-79134690 | Msa0428310:intron | 65.0% | |
| GTTTGGACAGGGCCGGCCCA+AGG | + | chr3_2:79134651-79134670 | Msa0428310:intron | 70.0% | |
| ! | GGGTGGCTTGGCCCTTGGGC+CGG | - | chr3_2:79134666-79134685 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 79133501 | 79136252 | 79133501 | ID=Msa0428310;Name=Msa0428310 |
| chr3_2 | mRNA | 79133501 | 79136252 | 79133501 | ID=Msa0428310-mRNA-1;Parent=Msa0428310;Name=Msa0428310-mRNA-1;_AED=0.26;_eAED=0.26;_QI=98|1|1|1|1|1|5|296|271 |
| chr3_2 | exon | 79133501 | 79133784 | 79133501 | ID=Msa0428310-mRNA-1:exon:21246;Parent=Msa0428310-mRNA-1 |
| chr3_2 | exon | 79134177 | 79134435 | 79134177 | ID=Msa0428310-mRNA-1:exon:21247;Parent=Msa0428310-mRNA-1 |
| chr3_2 | exon | 79135348 | 79135384 | 79135348 | ID=Msa0428310-mRNA-1:exon:21248;Parent=Msa0428310-mRNA-1 |
| chr3_2 | exon | 79135519 | 79135735 | 79135519 | ID=Msa0428310-mRNA-1:exon:21249;Parent=Msa0428310-mRNA-1 |
| chr3_2 | exon | 79135840 | 79136252 | 79135840 | ID=Msa0428310-mRNA-1:exon:21250;Parent=Msa0428310-mRNA-1 |
| chr3_2 | five_prime_UTR | 79133501 | 79133598 | 79133501 | ID=Msa0428310-mRNA-1:five_prime_utr;Parent=Msa0428310-mRNA-1 |
| chr3_2 | CDS | 79133599 | 79133784 | 79133599 | ID=Msa0428310-mRNA-1:cds;Parent=Msa0428310-mRNA-1 |
| chr3_2 | CDS | 79134177 | 79134435 | 79134177 | ID=Msa0428310-mRNA-1:cds;Parent=Msa0428310-mRNA-1 |
| chr3_2 | CDS | 79135348 | 79135384 | 79135348 | ID=Msa0428310-mRNA-1:cds;Parent=Msa0428310-mRNA-1 |
| chr3_2 | CDS | 79135519 | 79135735 | 79135519 | ID=Msa0428310-mRNA-1:cds;Parent=Msa0428310-mRNA-1 |
| chr3_2 | CDS | 79135840 | 79135956 | 79135840 | ID=Msa0428310-mRNA-1:cds;Parent=Msa0428310-mRNA-1 |
| chr3_2 | three_prime_UTR | 79135957 | 79136252 | 79135957 | ID=Msa0428310-mRNA-1:three_prime_utr;Parent=Msa0428310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
