Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006110 | Msa0784230 | 0.808185 | 3.507324e-50 | -8.615850e-47 |
| Msa0026910 | Msa0784230 | 0.806016 | 1.009247e-49 | -8.615850e-47 |
| Msa0035150 | Msa0784230 | 0.808329 | 3.267964e-50 | -8.615850e-47 |
| Msa0042920 | Msa0784230 | 0.804927 | 1.707813e-49 | -8.615850e-47 |
| Msa0043980 | Msa0784230 | 0.803616 | 3.202156e-49 | -8.615850e-47 |
| Msa0058490 | Msa0784230 | 0.806321 | 8.705383e-50 | -8.615850e-47 |
| Msa0058510 | Msa0784230 | 0.803474 | 3.427188e-49 | -8.615850e-47 |
| Msa0075470 | Msa0784230 | 0.805665 | 1.196072e-49 | -8.615850e-47 |
| Msa0104800 | Msa0784230 | 0.802971 | 4.355378e-49 | -8.615850e-47 |
| Msa0114430 | Msa0784230 | 0.804497 | 2.099582e-49 | -8.615850e-47 |
| Msa0637900 | Msa0784230 | 0.805253 | 1.459573e-49 | -8.615850e-47 |
| Msa0659400 | Msa0784230 | 0.805531 | 1.276412e-49 | -8.615850e-47 |
| Msa0667050 | Msa0784230 | 0.807109 | 5.936200e-50 | -8.615850e-47 |
| Msa0672690 | Msa0784230 | 0.822922 | 1.828005e-53 | -8.615850e-47 |
| Msa0688070 | Msa0784230 | 0.804350 | 2.253751e-49 | -8.615850e-47 |
| Msa0693380 | Msa0784230 | 0.805354 | 1.389964e-49 | -8.615850e-47 |
| Msa0703780 | Msa0784230 | 0.821814 | 3.305314e-53 | -8.615850e-47 |
| Msa0721280 | Msa0784230 | 0.802107 | 6.563431e-49 | -8.615850e-47 |
| Msa0727710 | Msa0784230 | 0.800538 | 1.375431e-48 | -8.615850e-47 |
| Msa0731940 | Msa0784230 | 0.816502 | 5.349844e-52 | -8.615850e-47 |
| Msa0740510 | Msa0784230 | 0.803297 | 3.728501e-49 | -8.615850e-47 |
| Msa0784230 | Msa0800210 | 0.809275 | 2.050534e-50 | -8.615850e-47 |
| Msa0784230 | Msa0810220 | 0.823018 | 1.735863e-53 | -8.615850e-47 |
| Msa0784230 | Msa0817460 | 0.809085 | 2.252896e-50 | -8.615850e-47 |
| Msa0784230 | Msa0820770 | 0.801299 | 9.614352e-49 | -8.615850e-47 |
| Msa0784230 | Msa0831850 | 0.803557 | 3.294169e-49 | -8.615850e-47 |
| Msa0784230 | Msa0832150 | 0.803044 | 4.205895e-49 | -8.615850e-47 |
| Msa0784230 | Msa0832340 | 0.815407 | 9.392026e-52 | -8.615850e-47 |
| Msa0784230 | Msa0842650 | 0.807136 | 5.858107e-50 | -8.615850e-47 |
| Msa0784230 | Msa0842710 | 0.804252 | 2.361790e-49 | -8.615850e-47 |
| Msa0784230 | Msa0844490 | 0.815065 | 1.118701e-51 | -8.615850e-47 |
| Msa0784230 | Msa0847880 | 0.803380 | 3.584627e-49 | -8.615850e-47 |
| Msa0784230 | Msa0857640 | 0.815727 | 7.972315e-52 | -8.615850e-47 |
| Msa0784230 | Msa0861090 | 0.801811 | 7.550337e-49 | -8.615850e-47 |
| Msa0784230 | Msa0866410 | 0.804334 | 2.270351e-49 | -8.615850e-47 |
| Msa0784230 | Msa0927380 | 0.803928 | 2.758761e-49 | -8.615850e-47 |
| Msa0784230 | Msa0931520 | 0.817406 | 3.352982e-52 | -8.615850e-47 |
| Msa0784230 | Msa0935910 | 0.817170 | 3.788112e-52 | -8.615850e-47 |
| Msa0784230 | Msa0936300 | 0.819934 | 8.947637e-53 | -8.615850e-47 |
| Msa0784230 | Msa0953120 | 0.808471 | 3.046520e-50 | -8.615850e-47 |
| Msa0784230 | Msa0964900 | 0.808054 | 3.738892e-50 | -8.615850e-47 |
| Msa0784230 | Msa0969520 | 0.824150 | 9.430502e-54 | -8.615850e-47 |
| Msa0784230 | Msa0997370 | 0.803361 | 3.617014e-49 | -8.615850e-47 |
| Msa0784230 | Msa1002850 | 0.808304 | 3.307504e-50 | -8.615850e-47 |
| Msa0784230 | Msa1014540 | 0.802872 | 4.565305e-49 | -8.615850e-47 |
| Msa0784230 | Msa1030970 | 0.808069 | 3.711761e-50 | -8.615850e-47 |
| Msa0784230 | Msa1070010 | 0.814752 | 1.312996e-51 | -8.615850e-47 |
| Msa0784230 | Msa1075220 | -0.804971 | 1.672322e-49 | -8.615850e-47 |
| Msa0784230 | Msa1082500 | 0.825854 | 3.735850e-54 | -8.615850e-47 |
| Msa0784230 | Msa1082580 | 0.804725 | 1.881852e-49 | -8.615850e-47 |
| Msa0784230 | Msa1111870 | 0.802801 | 4.721043e-49 | -8.615850e-47 |
| Msa0784230 | Msa1121490 | 0.804597 | 2.001282e-49 | -8.615850e-47 |
| Msa0784230 | Msa1131220 | 0.810142 | 1.335093e-50 | -8.615850e-47 |
| Msa0784230 | Msa1137570 | 0.845762 | 3.318359e-59 | -8.615850e-47 |
| Msa0784230 | Msa1142670 | 0.813450 | 2.544584e-51 | -8.615850e-47 |
| Msa0784230 | Msa1154280 | 0.807170 | 5.760745e-50 | -8.615850e-47 |
| Msa0784230 | Msa1162550 | -0.802610 | 5.170094e-49 | -8.615850e-47 |
| Msa0784230 | Msa1174040 | 0.811381 | 7.202265e-51 | -8.615850e-47 |
| Msa0784230 | Msa1193290 | 0.811951 | 5.414454e-51 | -8.615850e-47 |
| Msa0784230 | Msa1224480 | 0.800678 | 1.287822e-48 | -8.615850e-47 |
| Msa0784230 | Msa1284680 | 0.818155 | 2.272086e-52 | -8.615850e-47 |
| Msa0784230 | Msa1286800 | 0.805284 | 1.437954e-49 | -8.615850e-47 |
| Msa0784230 | Msa1297290 | 0.813665 | 2.281574e-51 | -8.615850e-47 |
| Msa0784230 | Msa1310700 | 0.808582 | 2.885776e-50 | -8.615850e-47 |
| Msa0784230 | Msa1353470 | 0.809924 | 1.487993e-50 | -8.615850e-47 |
| Msa0784230 | Msa1353980 | 0.809922 | 1.489446e-50 | -8.615850e-47 |
| Msa0784230 | Msa1385000 | 0.811856 | 5.677446e-51 | -8.615850e-47 |
| Msa0784230 | Msa1408620 | -0.810728 | 9.976985e-51 | -8.615850e-47 |
| Msa0784230 | Msa1411020 | 0.813995 | 1.929751e-51 | -8.615850e-47 |
| Msa0784230 | Msa1420490 | 0.802252 | 6.126732e-49 | -8.615850e-47 |
| Msa0784230 | Msa1423390 | 0.800942 | 1.137341e-48 | -8.615850e-47 |
| Msa0784230 | Msa1424290 | 0.807189 | 5.707454e-50 | -8.615850e-47 |
| Msa0784230 | Msa1427230 | 0.815930 | 7.182020e-52 | -8.615850e-47 |
| Msa0784230 | Msa1434350 | 0.810679 | 1.022668e-50 | -8.615850e-47 |
| Msa0784230 | Msa1435270 | 0.801225 | 9.954471e-49 | -8.615850e-47 |
| Msa0784230 | Msa1439320 | 0.817780 | 2.761404e-52 | -8.615850e-47 |
| Msa0784230 | Msa1440370 | 0.803091 | 4.112967e-49 | -8.615850e-47 |
| Msa0784230 | Msa1440810 | 0.804829 | 1.790462e-49 | -8.615850e-47 |
| Msa0784230 | Msa1451620 | -0.803105 | 4.085275e-49 | -8.615850e-47 |
| Msa0784230 | Msa1460830 | 0.803266 | 3.784732e-49 | -8.615850e-47 |
| Msa0784230 | Msa1466540 | 0.827670 | 1.376206e-54 | -8.615850e-47 |
| Msa0131770 | Msa0784230 | 0.816626 | 5.018443e-52 | -8.615850e-47 |
| Msa0138500 | Msa0784230 | 0.801746 | 7.786407e-49 | -8.615850e-47 |
| Msa0138520 | Msa0784230 | 0.800002 | 1.768103e-48 | -8.615850e-47 |
| Msa0151180 | Msa0784230 | 0.810845 | 9.412596e-51 | -8.615850e-47 |
| Msa0178510 | Msa0784230 | 0.802876 | 4.555606e-49 | -8.615850e-47 |
| Msa0178930 | Msa0784230 | 0.804121 | 2.515027e-49 | -8.615850e-47 |
| Msa0180500 | Msa0784230 | 0.806959 | 6.385923e-50 | -8.615850e-47 |
| Msa0186950 | Msa0784230 | 0.802620 | 5.144825e-49 | -8.615850e-47 |
| Msa0187250 | Msa0784230 | 0.803899 | 2.796625e-49 | -8.615850e-47 |
| Msa0197660 | Msa0784230 | 0.804496 | 2.100698e-49 | -8.615850e-47 |
| Msa0206010 | Msa0784230 | 0.806118 | 9.609424e-50 | -8.615850e-47 |
| Msa0212990 | Msa0784230 | 0.805003 | 1.646054e-49 | -8.615850e-47 |
| Msa0213520 | Msa0784230 | 0.808794 | 2.599019e-50 | -8.615850e-47 |
| Msa0220580 | Msa0784230 | 0.803540 | 3.320643e-49 | -8.615850e-47 |
| Msa0223010 | Msa0784230 | 0.804419 | 2.180420e-49 | -8.615850e-47 |
| Msa0233300 | Msa0784230 | 0.820631 | 6.193057e-53 | -8.615850e-47 |
| Msa0412840 | Msa0784230 | 0.815789 | 7.722339e-52 | -8.615850e-47 |
| Msa0426900 | Msa0784230 | 0.816382 | 5.691942e-52 | -8.615850e-47 |
| Msa0455760 | Msa0784230 | 0.800823 | 1.202959e-48 | -8.615850e-47 |
| Msa0459260 | Msa0784230 | 0.802869 | 4.572365e-49 | -8.615850e-47 |
| Msa0479340 | Msa0784230 | 0.812264 | 4.626423e-51 | -8.615850e-47 |
| Msa0239800 | Msa0784230 | 0.808250 | 3.395837e-50 | -8.615850e-47 |
| Msa0251640 | Msa0784230 | 0.810077 | 1.378643e-50 | -8.615850e-47 |
| Msa0264150 | Msa0784230 | 0.805228 | 1.477273e-49 | -8.615850e-47 |
| Msa0277820 | Msa0784230 | 0.801339 | 9.435902e-49 | -8.615850e-47 |
| Msa0306210 | Msa0784230 | -0.803470 | 3.433936e-49 | -8.615850e-47 |
| Msa0315290 | Msa0784230 | 0.802880 | 4.548499e-49 | -8.615850e-47 |
| Msa0317510 | Msa0784230 | 0.807987 | 3.863715e-50 | -8.615850e-47 |
| Msa0319170 | Msa0784230 | 0.828343 | 9.476704e-55 | -8.615850e-47 |
| Msa0326110 | Msa0784230 | 0.811613 | 6.412675e-51 | -8.615850e-47 |
| Msa0326520 | Msa0784230 | 0.831807 | 1.354189e-55 | -8.615850e-47 |
| Msa0330340 | Msa0784230 | 0.804173 | 2.452967e-49 | -8.615850e-47 |
| Msa0484780 | Msa0784230 | 0.835300 | 1.818762e-56 | -8.615850e-47 |
| Msa0495330 | Msa0784230 | 0.815511 | 8.906169e-52 | -8.615850e-47 |
| Msa0523460 | Msa0784230 | 0.802829 | 4.659398e-49 | -8.615850e-47 |
| Msa0532350 | Msa0784230 | 0.802543 | 5.338288e-49 | -8.615850e-47 |
| Msa0545700 | Msa0784230 | 0.817037 | 4.058889e-52 | -8.615850e-47 |
| Msa0585230 | Msa0784230 | 0.836490 | 9.077099e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 23 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACATACATGTTAAAGATTT+TGG | 0.132587 | 5_2:+68661332 | Msa0784230:CDS |
| CTCAATCTTAGGACTGTTTC+AGG | 0.184611 | 5_2:+68660475 | Msa0784230:intron |
| GCTTTCGAGTTTGTGTTTAT+TGG | 0.221634 | 5_2:+68660558 | Msa0784230:CDS |
| TTGAAGGGACTGACTTTAAT+TGG | 0.224670 | 5_2:+68660355 | Msa0784230:CDS |
| GGTCGTTAGACCAATATATT+AGG | 0.350221 | 5_2:-68661718 | None:intergenic |
| AGCCATGTTGCCAGATGAAA+TGG | 0.356502 | 5_2:+68660717 | Msa0784230:intron |
| TTGCCAAGGCCCATTTCATC+TGG | 0.382428 | 5_2:-68660727 | None:intergenic |
| CTCATAGACATAAGACTTCA+AGG | 0.389555 | 5_2:-68661373 | None:intergenic |
| AATTGAAGTAAGCTTGAAAA+TGG | 0.393954 | 5_2:-68661739 | None:intergenic |
| GGGCCTTGGCAAAACAGTTC+AGG | 0.413248 | 5_2:+68660738 | Msa0784230:CDS |
| AGGTGATGGTGCTGCATCAT+TGG | 0.426380 | 5_2:+68660495 | Msa0784230:CDS |
| TGTAGGATAATGTGGTTTGA+AGG | 0.462219 | 5_2:+68660339 | None:intergenic |
| CTTAGGACTGTTTCAGGTGA+TGG | 0.478739 | 5_2:+68660481 | Msa0784230:intron |
| CATCATTGGATTCATTGTTG+TGG | 0.512288 | 5_2:+68660509 | Msa0784230:CDS |
| TTGCCAGATGAAATGGGCCT+TGG | 0.512607 | 5_2:+68660724 | Msa0784230:CDS |
| TGTCTATGAGACAAGTAGTA+AGG | 0.532037 | 5_2:+68661386 | Msa0784230:CDS |
| GTAGGATAATGTGGTTTGAA+GGG | 0.532173 | 5_2:+68660340 | None:intergenic |
| CCTCTGAAAGCTATTAGCAC+TGG | 0.561326 | 5_2:-68661511 | None:intergenic |
| GCCCATTTCATCTGGCAACA+TGG | 0.565590 | 5_2:-68660719 | None:intergenic |
| GCCATGTTGCCAGATGAAAT+GGG | 0.585539 | 5_2:+68660718 | Msa0784230:intron |
| ATAGAAAGTGTAACAATACA+AGG | 0.614484 | 5_2:-68661625 | None:intergenic |
| TTGTGTGTATATTGCTACTG+CGG | 0.661795 | 5_2:+68660588 | Msa0784230:CDS |
| CCAGTGCTAATAGCTTTCAG+AGG | 0.672692 | 5_2:+68661511 | Msa0784230:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTCATACTTTTTATGTT+AGG | + | chr5_2:68661209-68661228 | Msa0784230:intron | 15.0% |
| !!! | GTTTTTTTTTTCTTTATGTT+CGG | + | chr5_2:68661437-68661456 | Msa0784230:intron | 15.0% |
| !!! | TTTTTCATACTTTTTATGTT+AGG | + | chr5_2:68661209-68661228 | Msa0784230:intron | 15.0% |
| !!! | GTTTTTTTTTTCTTTATGTT+CGG | + | chr5_2:68661437-68661456 | Msa0784230:intron | 15.0% |
| !!! | TGTCATATGTTTTTGTTTTT+AGG | + | chr5_2:68660831-68660850 | Msa0784230:intron | 20.0% |
| !! | AAATTGAAAATAACAACCAA+AGG | - | chr5_2:68661038-68661057 | None:intergenic | 20.0% |
| !!! | TACATACATGTTAAAGATTT+TGG | + | chr5_2:68661332-68661351 | Msa0784230:CDS | 20.0% |
| !!! | CATGTTAAAGATTTTGTTTT+TGG | + | chr5_2:68661415-68661434 | Msa0784230:intron | 20.0% |
| !!! | TAAATTTATTTTCATGCAAC+AGG | + | chr5_2:68661465-68661484 | Msa0784230:intron | 20.0% |
| !!! | CTATGTATTTTACTGTAAAT+TGG | + | chr5_2:68661644-68661663 | Msa0784230:three_prime_UTR | 20.0% |
| !!! | TGTCATATGTTTTTGTTTTT+AGG | + | chr5_2:68660831-68660850 | Msa0784230:intron | 20.0% |
| !! | AAATTGAAAATAACAACCAA+AGG | - | chr5_2:68661038-68661057 | None:intergenic | 20.0% |
| !!! | TACATACATGTTAAAGATTT+TGG | + | chr5_2:68661332-68661351 | Msa0784230:CDS | 20.0% |
| !!! | CATGTTAAAGATTTTGTTTT+TGG | + | chr5_2:68661415-68661434 | Msa0784230:intron | 20.0% |
| !!! | TAAATTTATTTTCATGCAAC+AGG | + | chr5_2:68661465-68661484 | Msa0784230:intron | 20.0% |
| !!! | CTATGTATTTTACTGTAAAT+TGG | + | chr5_2:68661644-68661663 | Msa0784230:three_prime_UTR | 20.0% |
| ! | ATTATGGATTTCTCAATCTT+AGG | + | chr5_2:68660464-68660483 | Msa0784230:intron | 25.0% |
| ! | TTGCCTAAAAACAAACAAAA+GGG | - | chr5_2:68660870-68660889 | None:intergenic | 25.0% |
| ! | ATTGCCTAAAAACAAACAAA+AGG | - | chr5_2:68660871-68660890 | None:intergenic | 25.0% |
| ! | AAGAAACAATAGTCTAAGTA+TGG | - | chr5_2:68661007-68661026 | None:intergenic | 25.0% |
| !! | TGTTTCTTTTATGATTCCTT+TGG | + | chr5_2:68661019-68661038 | Msa0784230:intron | 25.0% |
| !! | ATAGAAAGTGTAACAATACA+AGG | - | chr5_2:68661628-68661647 | None:intergenic | 25.0% |
| !!! | CTACTTTTAGCCTAATATAT+TGG | + | chr5_2:68661708-68661727 | Msa0784230:three_prime_UTR | 25.0% |
| ! | ATTATGGATTTCTCAATCTT+AGG | + | chr5_2:68660464-68660483 | Msa0784230:intron | 25.0% |
| ! | TTGCCTAAAAACAAACAAAA+GGG | - | chr5_2:68660870-68660889 | None:intergenic | 25.0% |
| ! | ATTGCCTAAAAACAAACAAA+AGG | - | chr5_2:68660871-68660890 | None:intergenic | 25.0% |
| ! | AAGAAACAATAGTCTAAGTA+TGG | - | chr5_2:68661007-68661026 | None:intergenic | 25.0% |
| !! | TGTTTCTTTTATGATTCCTT+TGG | + | chr5_2:68661019-68661038 | Msa0784230:intron | 25.0% |
| !! | ATAGAAAGTGTAACAATACA+AGG | - | chr5_2:68661628-68661647 | None:intergenic | 25.0% |
| !!! | CTACTTTTAGCCTAATATAT+TGG | + | chr5_2:68661708-68661727 | Msa0784230:three_prime_UTR | 25.0% |
| TATGCAAGAATATCACACTA+AGG | + | chr5_2:68660378-68660397 | Msa0784230:intron | 30.0% | |
| AATCCATAATGAAAACACAG+TGG | - | chr5_2:68660454-68660473 | None:intergenic | 30.0% | |
| !!! | AAGCTTTGTGGTTTTGATAA+TGG | + | chr5_2:68660619-68660638 | Msa0784230:CDS | 30.0% |
| TTGTGCTTTAGTGTTTACTA+TGG | + | chr5_2:68660650-68660669 | Msa0784230:intron | 30.0% | |
| ACAAACAAAAGGGTTGTAAT+AGG | - | chr5_2:68660860-68660879 | None:intergenic | 30.0% | |
| !! | CAACCCTTTTGTTTGTTTTT+AGG | + | chr5_2:68660864-68660883 | Msa0784230:intron | 30.0% |
| AGTAGTGTATGTTTCATCAT+TGG | + | chr5_2:68660893-68660912 | Msa0784230:intron | 30.0% | |
| AAACAATAGTCTAAGTATGG+AGG | - | chr5_2:68661004-68661023 | None:intergenic | 30.0% | |
| TGAAAGTCTTCTTCATTATC+AGG | + | chr5_2:68661070-68661089 | Msa0784230:intron | 30.0% | |
| GAAAGTCTTCTTCATTATCA+GGG | + | chr5_2:68661071-68661090 | Msa0784230:intron | 30.0% | |
| CGAGGAAAAAAATCCATATA+AGG | - | chr5_2:68661273-68661292 | None:intergenic | 30.0% | |
| TATGCAAGAATATCACACTA+AGG | + | chr5_2:68660378-68660397 | Msa0784230:intron | 30.0% | |
| AATCCATAATGAAAACACAG+TGG | - | chr5_2:68660454-68660473 | None:intergenic | 30.0% | |
| !!! | AAGCTTTGTGGTTTTGATAA+TGG | + | chr5_2:68660619-68660638 | Msa0784230:CDS | 30.0% |
| TTGTGCTTTAGTGTTTACTA+TGG | + | chr5_2:68660650-68660669 | Msa0784230:intron | 30.0% | |
| ACAAACAAAAGGGTTGTAAT+AGG | - | chr5_2:68660860-68660879 | None:intergenic | 30.0% | |
| !! | CAACCCTTTTGTTTGTTTTT+AGG | + | chr5_2:68660864-68660883 | Msa0784230:intron | 30.0% |
| AGTAGTGTATGTTTCATCAT+TGG | + | chr5_2:68660893-68660912 | Msa0784230:intron | 30.0% | |
| AAACAATAGTCTAAGTATGG+AGG | - | chr5_2:68661004-68661023 | None:intergenic | 30.0% | |
| TGAAAGTCTTCTTCATTATC+AGG | + | chr5_2:68661070-68661089 | Msa0784230:intron | 30.0% | |
| GAAAGTCTTCTTCATTATCA+GGG | + | chr5_2:68661071-68661090 | Msa0784230:intron | 30.0% | |
| CGAGGAAAAAAATCCATATA+AGG | - | chr5_2:68661273-68661292 | None:intergenic | 30.0% | |
| ! | TTGAAGGGACTGACTTTAAT+TGG | + | chr5_2:68660355-68660374 | Msa0784230:CDS | 35.0% |
| CATCATTGGATTCATTGTTG+TGG | + | chr5_2:68660509-68660528 | Msa0784230:CDS | 35.0% | |
| !! | GCTTTCGAGTTTGTGTTTAT+TGG | + | chr5_2:68660558-68660577 | Msa0784230:CDS | 35.0% |
| TTGTGTGTATATTGCTACTG+CGG | + | chr5_2:68660588-68660607 | Msa0784230:CDS | 35.0% | |
| CTTTCCATGGCAGTATATAA+GGG | - | chr5_2:68660925-68660944 | None:intergenic | 35.0% | |
| AAACCAGAGAACCTTCTTAT+TGG | + | chr5_2:68660966-68660985 | Msa0784230:intron | 35.0% | |
| AGTTTGTACTTCGCCTTATA+TGG | + | chr5_2:68661257-68661276 | Msa0784230:intron | 35.0% | |
| !! | CTTCAAGGTGTTCTTTTCTT+TGG | - | chr5_2:68661361-68661380 | None:intergenic | 35.0% |
| CTCATAGACATAAGACTTCA+AGG | - | chr5_2:68661376-68661395 | None:intergenic | 35.0% | |
| TGTCTATGAGACAAGTAGTA+AGG | + | chr5_2:68661386-68661405 | Msa0784230:CDS | 35.0% | |
| GGTCGTTAGACCAATATATT+AGG | - | chr5_2:68661721-68661740 | None:intergenic | 35.0% | |
| ! | TTGAAGGGACTGACTTTAAT+TGG | + | chr5_2:68660355-68660374 | Msa0784230:CDS | 35.0% |
| CATCATTGGATTCATTGTTG+TGG | + | chr5_2:68660509-68660528 | Msa0784230:CDS | 35.0% | |
| !! | GCTTTCGAGTTTGTGTTTAT+TGG | + | chr5_2:68660558-68660577 | Msa0784230:CDS | 35.0% |
| TTGTGTGTATATTGCTACTG+CGG | + | chr5_2:68660588-68660607 | Msa0784230:CDS | 35.0% | |
| CTTTCCATGGCAGTATATAA+GGG | - | chr5_2:68660925-68660944 | None:intergenic | 35.0% | |
| AAACCAGAGAACCTTCTTAT+TGG | + | chr5_2:68660966-68660985 | Msa0784230:intron | 35.0% | |
| AGTTTGTACTTCGCCTTATA+TGG | + | chr5_2:68661257-68661276 | Msa0784230:intron | 35.0% | |
| !! | CTTCAAGGTGTTCTTTTCTT+TGG | - | chr5_2:68661361-68661380 | None:intergenic | 35.0% |
| CTCATAGACATAAGACTTCA+AGG | - | chr5_2:68661376-68661395 | None:intergenic | 35.0% | |
| TGTCTATGAGACAAGTAGTA+AGG | + | chr5_2:68661386-68661405 | Msa0784230:CDS | 35.0% | |
| GGTCGTTAGACCAATATATT+AGG | - | chr5_2:68661721-68661740 | None:intergenic | 35.0% | |
| !! | GTGCCACTGTGTTTTCATTA+TGG | + | chr5_2:68660448-68660467 | Msa0784230:intron | 40.0% |
| CTCAATCTTAGGACTGTTTC+AGG | + | chr5_2:68660475-68660494 | Msa0784230:intron | 40.0% | |
| !!! | GCGGTTTTTTTGAAGCTTTG+TGG | + | chr5_2:68660607-68660626 | Msa0784230:CDS | 40.0% |
| GCTTTCCATGGCAGTATATA+AGG | - | chr5_2:68660926-68660945 | None:intergenic | 40.0% | |
| TGTGTATGACATGCTTTCCA+TGG | - | chr5_2:68660938-68660957 | None:intergenic | 40.0% | |
| ! | ATGGAAAGCATGTCATACAC+AGG | + | chr5_2:68660937-68660956 | Msa0784230:intron | 40.0% |
| ! | TGGAAAGCATGTCATACACA+GGG | + | chr5_2:68660938-68660957 | Msa0784230:intron | 40.0% |
| TCACTTGTGCACCAATAAGA+AGG | - | chr5_2:68660980-68660999 | None:intergenic | 40.0% | |
| TCAGGGTAAACTTAAGCTAG+CGG | + | chr5_2:68661088-68661107 | Msa0784230:intron | 40.0% | |
| !! | AAACTTAAGCTAGCGGACTT+TGG | + | chr5_2:68661095-68661114 | Msa0784230:intron | 40.0% |
| TTATGTTAGGTGTACTTCGC+AGG | + | chr5_2:68661222-68661241 | Msa0784230:intron | 40.0% | |
| GGCGAAGTACAAACTATGAA+AGG | - | chr5_2:68661252-68661271 | None:intergenic | 40.0% | |
| TGGAACAAACAATGAACACG+AGG | - | chr5_2:68661291-68661310 | None:intergenic | 40.0% | |
| TCGTGTTCATTGTTTGTTCC+AGG | + | chr5_2:68661290-68661309 | Msa0784230:intron | 40.0% | |
| CTGCACTTAACATTAACACC+TGG | - | chr5_2:68661311-68661330 | None:intergenic | 40.0% | |
| !! | GTGCCACTGTGTTTTCATTA+TGG | + | chr5_2:68660448-68660467 | Msa0784230:intron | 40.0% |
| CTCAATCTTAGGACTGTTTC+AGG | + | chr5_2:68660475-68660494 | Msa0784230:intron | 40.0% | |
| !!! | GCGGTTTTTTTGAAGCTTTG+TGG | + | chr5_2:68660607-68660626 | Msa0784230:CDS | 40.0% |
| GCTTTCCATGGCAGTATATA+AGG | - | chr5_2:68660926-68660945 | None:intergenic | 40.0% | |
| TGTGTATGACATGCTTTCCA+TGG | - | chr5_2:68660938-68660957 | None:intergenic | 40.0% | |
| ! | ATGGAAAGCATGTCATACAC+AGG | + | chr5_2:68660937-68660956 | Msa0784230:intron | 40.0% |
| ! | TGGAAAGCATGTCATACACA+GGG | + | chr5_2:68660938-68660957 | Msa0784230:intron | 40.0% |
| TCACTTGTGCACCAATAAGA+AGG | - | chr5_2:68660980-68660999 | None:intergenic | 40.0% | |
| TCAGGGTAAACTTAAGCTAG+CGG | + | chr5_2:68661088-68661107 | Msa0784230:intron | 40.0% | |
| !! | AAACTTAAGCTAGCGGACTT+TGG | + | chr5_2:68661095-68661114 | Msa0784230:intron | 40.0% |
| TTATGTTAGGTGTACTTCGC+AGG | + | chr5_2:68661222-68661241 | Msa0784230:intron | 40.0% | |
| GGCGAAGTACAAACTATGAA+AGG | - | chr5_2:68661252-68661271 | None:intergenic | 40.0% | |
| TGGAACAAACAATGAACACG+AGG | - | chr5_2:68661291-68661310 | None:intergenic | 40.0% | |
| TCGTGTTCATTGTTTGTTCC+AGG | + | chr5_2:68661290-68661309 | Msa0784230:intron | 40.0% | |
| CTGCACTTAACATTAACACC+TGG | - | chr5_2:68661311-68661330 | None:intergenic | 40.0% | |
| ! | CTTAGGACTGTTTCAGGTGA+TGG | + | chr5_2:68660481-68660500 | Msa0784230:intron | 45.0% |
| AGCCATGTTGCCAGATGAAA+TGG | + | chr5_2:68660717-68660736 | Msa0784230:intron | 45.0% | |
| GCCATGTTGCCAGATGAAAT+GGG | + | chr5_2:68660718-68660737 | Msa0784230:intron | 45.0% | |
| ! | ACACCTGAACTGTTTTGCCA+AGG | - | chr5_2:68660744-68660763 | None:intergenic | 45.0% |
| GCACCAATAAGAAGGTTCTC+TGG | - | chr5_2:68660972-68660991 | None:intergenic | 45.0% | |
| !! | TTAAGCTAGCGGACTTTGGA+TGG | + | chr5_2:68661099-68661118 | Msa0784230:intron | 45.0% |
| TGCATACATTCAATCGCAGC+CGG | + | chr5_2:68661126-68661145 | Msa0784230:intron | 45.0% | |
| ! | CCTCTGAAAGCTATTAGCAC+TGG | - | chr5_2:68661514-68661533 | None:intergenic | 45.0% |
| CCAGTGCTAATAGCTTTCAG+AGG | + | chr5_2:68661511-68661530 | Msa0784230:CDS | 45.0% | |
| ! | CTTAGGACTGTTTCAGGTGA+TGG | + | chr5_2:68660481-68660500 | Msa0784230:intron | 45.0% |
| AGCCATGTTGCCAGATGAAA+TGG | + | chr5_2:68660717-68660736 | Msa0784230:intron | 45.0% | |
| GCCATGTTGCCAGATGAAAT+GGG | + | chr5_2:68660718-68660737 | Msa0784230:intron | 45.0% | |
| ! | ACACCTGAACTGTTTTGCCA+AGG | - | chr5_2:68660744-68660763 | None:intergenic | 45.0% |
| GCACCAATAAGAAGGTTCTC+TGG | - | chr5_2:68660972-68660991 | None:intergenic | 45.0% | |
| !! | TTAAGCTAGCGGACTTTGGA+TGG | + | chr5_2:68661099-68661118 | Msa0784230:intron | 45.0% |
| TGCATACATTCAATCGCAGC+CGG | + | chr5_2:68661126-68661145 | Msa0784230:intron | 45.0% | |
| ! | CCTCTGAAAGCTATTAGCAC+TGG | - | chr5_2:68661514-68661533 | None:intergenic | 45.0% |
| CCAGTGCTAATAGCTTTCAG+AGG | + | chr5_2:68661511-68661530 | Msa0784230:CDS | 45.0% | |
| !! | AGGTGATGGTGCTGCATCAT+TGG | + | chr5_2:68660495-68660514 | Msa0784230:CDS | 50.0% |
| GCCCATTTCATCTGGCAACA+TGG | - | chr5_2:68660722-68660741 | None:intergenic | 50.0% | |
| TTGCCAGATGAAATGGGCCT+TGG | + | chr5_2:68660724-68660743 | Msa0784230:CDS | 50.0% | |
| TTGCCAAGGCCCATTTCATC+TGG | - | chr5_2:68660730-68660749 | None:intergenic | 50.0% | |
| CGTGCCCTTATATACTGCCA+TGG | + | chr5_2:68660918-68660937 | Msa0784230:intron | 50.0% | |
| GTAATCCTGTGTGCTGCACA+TGG | - | chr5_2:68661153-68661172 | None:intergenic | 50.0% | |
| ACACAGGATTACCTTCCACC+TGG | + | chr5_2:68661161-68661180 | Msa0784230:intron | 50.0% | |
| CACAGGATTACCTTCCACCT+GGG | + | chr5_2:68661162-68661181 | Msa0784230:intron | 50.0% | |
| GATTACCTTCCACCTGGGAT+GGG | + | chr5_2:68661167-68661186 | Msa0784230:intron | 50.0% | |
| CAACTGAACATACCCATCCC+AGG | - | chr5_2:68661182-68661201 | None:intergenic | 50.0% | |
| CTGGGATGGGTATGTTCAGT+TGG | + | chr5_2:68661180-68661199 | Msa0784230:intron | 50.0% | |
| !! | AGGTGATGGTGCTGCATCAT+TGG | + | chr5_2:68660495-68660514 | Msa0784230:CDS | 50.0% |
| GCCCATTTCATCTGGCAACA+TGG | - | chr5_2:68660722-68660741 | None:intergenic | 50.0% | |
| TTGCCAGATGAAATGGGCCT+TGG | + | chr5_2:68660724-68660743 | Msa0784230:CDS | 50.0% | |
| TTGCCAAGGCCCATTTCATC+TGG | - | chr5_2:68660730-68660749 | None:intergenic | 50.0% | |
| CGTGCCCTTATATACTGCCA+TGG | + | chr5_2:68660918-68660937 | Msa0784230:intron | 50.0% | |
| GTAATCCTGTGTGCTGCACA+TGG | - | chr5_2:68661153-68661172 | None:intergenic | 50.0% | |
| ACACAGGATTACCTTCCACC+TGG | + | chr5_2:68661161-68661180 | Msa0784230:intron | 50.0% | |
| CACAGGATTACCTTCCACCT+GGG | + | chr5_2:68661162-68661181 | Msa0784230:intron | 50.0% | |
| GATTACCTTCCACCTGGGAT+GGG | + | chr5_2:68661167-68661186 | Msa0784230:intron | 50.0% | |
| CAACTGAACATACCCATCCC+AGG | - | chr5_2:68661182-68661201 | None:intergenic | 50.0% | |
| CTGGGATGGGTATGTTCAGT+TGG | + | chr5_2:68661180-68661199 | Msa0784230:intron | 50.0% | |
| GGGCCTTGGCAAAACAGTTC+AGG | + | chr5_2:68660738-68660757 | Msa0784230:CDS | 55.0% | |
| GGATTACCTTCCACCTGGGA+TGG | + | chr5_2:68661166-68661185 | Msa0784230:intron | 55.0% | |
| ACATACCCATCCCAGGTGGA+AGG | - | chr5_2:68661175-68661194 | None:intergenic | 55.0% | |
| CTGAACATACCCATCCCAGG+TGG | - | chr5_2:68661179-68661198 | None:intergenic | 55.0% | |
| GGGCCTTGGCAAAACAGTTC+AGG | + | chr5_2:68660738-68660757 | Msa0784230:CDS | 55.0% | |
| GGATTACCTTCCACCTGGGA+TGG | + | chr5_2:68661166-68661185 | Msa0784230:intron | 55.0% | |
| ACATACCCATCCCAGGTGGA+AGG | - | chr5_2:68661175-68661194 | None:intergenic | 55.0% | |
| CTGAACATACCCATCCCAGG+TGG | - | chr5_2:68661179-68661198 | None:intergenic | 55.0% | |
| CCTGTGTGCTGCACATGGTC+CGG | - | chr5_2:68661148-68661167 | None:intergenic | 60.0% | |
| CCTGTGTGCTGCACATGGTC+CGG | - | chr5_2:68661148-68661167 | None:intergenic | 60.0% | |
| CCGGACCATGTGCAGCACAC+AGG | + | chr5_2:68661145-68661164 | Msa0784230:intron | 65.0% | |
| CCGGACCATGTGCAGCACAC+AGG | + | chr5_2:68661145-68661164 | Msa0784230:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 68660348 | 68661746 | 68660348 | ID=Msa0784230;Name=Msa0784230 |
| chr5_2 | mRNA | 68660348 | 68661746 | 68660348 | ID=Msa0784230-mRNA-1;Parent=Msa0784230;Name=Msa0784230-mRNA-1;_AED=0.25;_eAED=0.29;_QI=0|0.5|0.6|1|1|1|5|200|126 |
| chr5_2 | exon | 68660348 | 68660376 | 68660348 | ID=Msa0784230-mRNA-1:exon:20544;Parent=Msa0784230-mRNA-1 |
| chr5_2 | exon | 68660486 | 68660640 | 68660486 | ID=Msa0784230-mRNA-1:exon:20545;Parent=Msa0784230-mRNA-1 |
| chr5_2 | exon | 68660719 | 68660759 | 68660719 | ID=Msa0784230-mRNA-1:exon:20546;Parent=Msa0784230-mRNA-1 |
| chr5_2 | exon | 68661312 | 68661407 | 68661312 | ID=Msa0784230-mRNA-1:exon:20547;Parent=Msa0784230-mRNA-1 |
| chr5_2 | exon | 68661487 | 68661746 | 68661487 | ID=Msa0784230-mRNA-1:exon:20548;Parent=Msa0784230-mRNA-1 |
| chr5_2 | CDS | 68660348 | 68660376 | 68660348 | ID=Msa0784230-mRNA-1:cds;Parent=Msa0784230-mRNA-1 |
| chr5_2 | CDS | 68660486 | 68660640 | 68660486 | ID=Msa0784230-mRNA-1:cds;Parent=Msa0784230-mRNA-1 |
| chr5_2 | CDS | 68660719 | 68660759 | 68660719 | ID=Msa0784230-mRNA-1:cds;Parent=Msa0784230-mRNA-1 |
| chr5_2 | CDS | 68661312 | 68661407 | 68661312 | ID=Msa0784230-mRNA-1:cds;Parent=Msa0784230-mRNA-1 |
| chr5_2 | CDS | 68661487 | 68661546 | 68661487 | ID=Msa0784230-mRNA-1:cds;Parent=Msa0784230-mRNA-1 |
| chr5_2 | three_prime_UTR | 68661547 | 68661746 | 68661547 | ID=Msa0784230-mRNA-1:three_prime_utr;Parent=Msa0784230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
