AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0470850


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0470850 MtrunA17_Chr3g0125521 97.037 270 6 2 1 269 1 269 0.0 536
Msa0470850 MtrunA17_Chr5g0398211 50.000 176 83 3 50 221 38 212 3.35e-54 176
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0470850 AT1G44000.1 59.193 223 84 4 33 250 40 260 6.30e-83 249
Msa0470850 AT4G11910.1 48.792 207 100 4 19 220 6 211 5.21e-57 184
Msa0470850 AT4G22920.2 50.279 179 82 4 50 222 42 219 3.30e-53 174
Msa0470850 AT4G22920.1 50.279 179 82 4 50 222 42 219 3.30e-53 174
Msa0470850 AT4G11911.1 47.980 198 97 4 21 213 8 204 2.56e-50 167
Msa0470850 AT4G11911.2 50.307 163 76 3 55 213 3 164 2.25e-46 155

Find 77 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATGATGGCTTTAACATAAA+AGG 0.172024 3_3:-73063736 None:intergenic
TGTCAGTGGTCCCACCTTCC+TGG 0.218929 3_3:+73065175 Msa0470850:CDS
TCTTCTTTCAAATGTATTAC+TGG 0.239741 3_3:+73066772 Msa0470850:CDS
ACTATAGAATCTAGCAATTC+TGG 0.263981 3_3:-73066041 None:intergenic
AAAACTGAAGGTTGTTCTAT+TGG 0.270997 3_3:+73064665 Msa0470850:CDS
CATAAAAGGGAATAATAGTT+TGG 0.275576 3_3:-73063722 None:intergenic
ACCTCCATTGCATCCTTTAG+AGG 0.283350 3_3:-73066119 None:intergenic
CTTTCCTCAGCTAGAACTTT+GGG 0.299158 3_3:+73066825 Msa0470850:exon
ATCTTAGACTGTTAGGCTCT+TGG 0.300131 3_3:+73064617 Msa0470850:intron
TGTCAAGTAAATGTGTTAAC+AGG 0.321931 3_3:+73066964 Msa0470850:three_prime_UTR
CTACAATTCACTTGTTTATG+AGG 0.352131 3_3:+73063810 Msa0470850:CDS
TCTTAGACTGTTAGGCTCTT+GGG 0.362154 3_3:+73064618 Msa0470850:intron
CTCATAAACAAGTGAATTGT+AGG 0.365356 3_3:-73063809 None:intergenic
ATACAATAGAATGGAATGTT+GGG 0.373761 3_3:+73066094 Msa0470850:CDS
TGGGATAGAATGTAGGTTCT+TGG 0.374986 3_3:-73064720 None:intergenic
AGTAGTAGTGATTGAGGAAG+AGG 0.375220 3_3:-73063773 None:intergenic
TCTTTCCTCAGCTAGAACTT+TGG 0.379723 3_3:+73066824 Msa0470850:exon
GTACTCAAAGCAATTCAATA+TGG 0.404542 3_3:+73065993 Msa0470850:CDS
AATACAATAGAATGGAATGT+TGG 0.405010 3_3:+73066093 Msa0470850:CDS
CAAATGTATTACTGGTAACT+TGG 0.405426 3_3:+73066780 Msa0470850:CDS
GAGCTTGGAAGTTGGACATT+GGG 0.411745 3_3:-73066739 None:intergenic
GGAATTAGTAGTAGTGATTG+AGG 0.419635 3_3:-73063779 None:intergenic
CTAGCAATTCTGGATGCTCT+TGG 0.426613 3_3:-73066031 None:intergenic
GTTCTAGCTGAGGAAAGAAT+CGG 0.444594 3_3:-73066819 None:intergenic
AGATCGTCCTCCTGAAAAGT+TGG 0.452073 3_3:+73066712 Msa0470850:CDS
TTTGGTTGGTGAAAATGAAA+AGG 0.458744 3_3:-73063704 None:intergenic
CTGCTCTAATTTGATGACAT+TGG 0.459455 3_3:-73064778 None:intergenic
ATGATGGCTTTAACATAAAA+GGG 0.462543 3_3:-73063735 None:intergenic
TTACTGTTATGCATCTTCAA+TGG 0.480394 3_3:+73063648 Msa0470850:exon
AAAGGGAATAATAGTTTGGT+TGG 0.481979 3_3:-73063718 None:intergenic
CTCAGTTTGATTGGTTCATG+TGG 0.491052 3_3:-73063513 None:intergenic
ATTCTCCAAGGAAATGACTT+TGG 0.498853 3_3:+73065226 Msa0470850:CDS
TAAACTCAGCAGCTAGATCC+AGG 0.500066 3_3:-73065193 None:intergenic
ACATACCAAAGTCATTTCCT+TGG 0.502450 3_3:-73065231 None:intergenic
CAATGTCATCAAATTAGAGC+AGG 0.504347 3_3:+73064779 Msa0470850:CDS
ATTTGAAGCTTCAAAACTGA+AGG 0.509783 3_3:+73064653 Msa0470850:CDS
GATAACTCATATCATTGAGT+GGG 0.515433 3_3:-73066998 None:intergenic
AGGAGAAAGAAAAGTGATGT+GGG 0.515635 3_3:-73063552 None:intergenic
GTTAAGACAGAGAAGAAAGA+AGG 0.516334 3_3:-73063572 None:intergenic
AGTAGTGATTGAGGAAGAGG+AGG 0.521908 3_3:-73063770 None:intergenic
TTCTAGCTGAGGAAAGAATC+GGG 0.522802 3_3:-73066818 None:intergenic
GATCGTCCTCCTGAAAAGTT+GGG 0.523261 3_3:+73066713 Msa0470850:CDS
CATGTTCATTGCTTTGTCAG+TGG 0.525605 3_3:+73065161 Msa0470850:CDS
AAGTGAATTGTAGGAAGGAG+TGG 0.525993 3_3:-73063800 None:intergenic
TGTTAGGCTCTTGGGTCCTC+CGG 0.526180 3_3:+73064626 Msa0470850:CDS
AGAGCTTGGAAGTTGGACAT+TGG 0.533577 3_3:-73066740 None:intergenic
AAACGAGCGGATCAGTTACA+AGG 0.534539 3_3:+73066677 Msa0470850:CDS
TAATACATTTGAAAGAAGAA+AGG 0.546906 3_3:-73066768 None:intergenic
TCCTCAGCTAGAACTTTGGG+TGG 0.548419 3_3:+73066828 Msa0470850:exon
GAGGAGCATCTGAAAGATGA+TGG 0.549556 3_3:-73063751 None:intergenic
GTTGAGAGGGTGGTATATGA+AGG 0.552011 3_3:+73065091 Msa0470850:intron
AAGGAGAAAGAAAAGTGATG+TGG 0.554153 3_3:-73063553 None:intergenic
AGGATGATGTTGTAGCTGAA+TGG 0.558895 3_3:+73065111 Msa0470850:CDS
AAGTAAATGTGTTAACAGGT+TGG 0.559037 3_3:+73066968 Msa0470850:three_prime_UTR
AGCAGCTAGATCCAGGAAGG+TGG 0.563297 3_3:-73065186 None:intergenic
AGCTAGAATGGAAATATACT+CGG 0.570364 3_3:-73066064 None:intergenic
TAGATATCACATATTCTCCA+AGG 0.573339 3_3:+73065214 Msa0470850:CDS
GCCTCTAAAGGATGCAATGG+AGG 0.575264 3_3:+73066118 Msa0470850:CDS
TGATAACTCATATCATTGAG+TGG 0.579150 3_3:-73066999 None:intergenic
TACAATAGAATGGAATGTTG+GGG 0.580589 3_3:+73066095 Msa0470850:CDS
TAAACAAGTGAATTGTAGGA+AGG 0.591615 3_3:-73063805 None:intergenic
CTGTGAAATGGCAGTTGAGA+GGG 0.593385 3_3:+73065078 Msa0470850:intron
GCAGCTAGATCCAGGAAGGT+GGG 0.601168 3_3:-73065185 None:intergenic
GGGGCCTCTAAAGGATGCAA+TGG 0.602659 3_3:+73066115 Msa0470850:CDS
AGCATATTTCTTGTGCACAA+AGG 0.604183 3_3:+73066914 Msa0470850:three_prime_UTR
GTCACAGTGGGATAGAATGT+AGG 0.608968 3_3:-73064727 None:intergenic
ATTAGCTGTTAAGTCACAGT+GGG 0.615651 3_3:-73064739 None:intergenic
CTCAGCAGCTAGATCCAGGA+AGG 0.626953 3_3:-73065189 None:intergenic
TGACAAAGCAATGAACATGT+AGG 0.637146 3_3:-73065157 None:intergenic
CTTGCAAGAATGACTCCAAG+AGG 0.637333 3_3:+73066872 Msa0470850:three_prime_UTR
ACCACCCAAAGTTCTAGCTG+AGG 0.657344 3_3:-73066829 None:intergenic
TCTGTGAAATGGCAGTTGAG+AGG 0.659471 3_3:+73065077 Msa0470850:intron
ACAATAGAATGGAATGTTGG+GGG 0.673943 3_3:+73066096 Msa0470850:CDS
TGAAATGGCAGTTGAGAGGG+TGG 0.680898 3_3:+73065081 Msa0470850:intron
AACGAGCGGATCAGTTACAA+GGG 0.682090 3_3:+73066678 Msa0470850:CDS
GATTAGCTGTTAAGTCACAG+TGG 0.723492 3_3:-73064740 None:intergenic
GTGGCATGTGAAACATGAAG+AGG 0.730865 3_3:+73063616 Msa0470850:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAATAAATATAATAAAA+TGG - chr3_3:73063866-73063885 None:intergenic 0.0%
!!! TTATTTATTTATTTATTTTA+TGG + chr3_3:73063877-73063896 Msa0470850:intron 0.0%
!! AAATAAATATAATAAAATGG+TGG - chr3_3:73063863-73063882 None:intergenic 10.0%
!! ATTGAATTTATAGTTATTAG+TGG + chr3_3:73065620-73065639 Msa0470850:intron 15.0%
!! TTGAATTTATAGTTATTAGT+GGG + chr3_3:73065621-73065640 Msa0470850:intron 15.0%
!!! GTTCATTTAATAAACTTTTT+AGG + chr3_3:73065643-73065662 Msa0470850:intron 15.0%
!!! ATTTAATAAACTTTTTAGGA+GGG + chr3_3:73065647-73065666 Msa0470850:intron 15.0%
!!! TAAATCATTGTTTAAAATTG+TGG + chr3_3:73065836-73065855 Msa0470850:intron 15.0%
!! TTCTTGTAAAAATAAAATTG+TGG + chr3_3:73065911-73065930 Msa0470850:intron 15.0%
!!! ATCAATATATTTTCACAAAA+TGG - chr3_3:73066255-73066274 None:intergenic 15.0%
!! TATATAATCTTAAACAGTAA+GGG - chr3_3:73066303-73066322 None:intergenic 15.0%
!! TAACAAGAAAAAGAAGATAA+TGG + chr3_3:73063591-73063610 Msa0470850:five_prime_UTR 20.0%
!!! AAAATGGTGGAAATTAAAAA+GGG - chr3_3:73063850-73063869 None:intergenic 20.0%
!!! TAAAATGGTGGAAATTAAAA+AGG - chr3_3:73063851-73063870 None:intergenic 20.0%
!! AAACTGTGAAAGAATAAAAA+GGG - chr3_3:73063946-73063965 None:intergenic 20.0%
!! TTTACTACATTATAATCTGT+TGG + chr3_3:73064168-73064187 Msa0470850:intron 20.0%
!! TTACTACATTATAATCTGTT+GGG + chr3_3:73064169-73064188 Msa0470850:intron 20.0%
!!! TAGAAATCTTAATTTTGTAC+TGG - chr3_3:73064332-73064351 None:intergenic 20.0%
!! CAATAGTCAATTATTGTTAT+TGG + chr3_3:73064438-73064457 Msa0470850:intron 20.0%
!! TATCTGGTATATGTAAAAAT+TGG + chr3_3:73065419-73065438 Msa0470850:intron 20.0%
!!! CATTTAATAAACTTTTTAGG+AGG + chr3_3:73065646-73065665 Msa0470850:intron 20.0%
!!! GACTTTTACTTTTTAAACTT+TGG - chr3_3:73065705-73065724 None:intergenic 20.0%
!! CTCAAAAAAATACAATAGAA+TGG + chr3_3:73066085-73066104 Msa0470850:CDS 20.0%
!! CTATATAATCTTAAACAGTA+AGG - chr3_3:73066304-73066323 None:intergenic 20.0%
!! TTATAATCACCAATTTAACA+GGG - chr3_3:73066576-73066595 None:intergenic 20.0%
!! ATTATAATCACCAATTTAAC+AGG - chr3_3:73066577-73066596 None:intergenic 20.0%
!! TAATACATTTGAAAGAAGAA+AGG - chr3_3:73066771-73066790 None:intergenic 20.0%
! CATAAAAGGGAATAATAGTT+TGG - chr3_3:73063725-73063744 None:intergenic 25.0%
!!! ATGATGGCTTTAACATAAAA+GGG - chr3_3:73063738-73063757 None:intergenic 25.0%
! GAAACTGTGAAAGAATAAAA+AGG - chr3_3:73063947-73063966 None:intergenic 25.0%
! TTCTACATTAACAAAGAAGA+TGG - chr3_3:73064032-73064051 None:intergenic 25.0%
! ACATTCACATATGAGTAATT+AGG - chr3_3:73064123-73064142 None:intergenic 25.0%
! CAAAGAATGCAATTATAACA+AGG - chr3_3:73064228-73064247 None:intergenic 25.0%
! ATTGAAGTTATCACTGAATT+AGG + chr3_3:73064260-73064279 Msa0470850:intron 25.0%
! TTGAAGTTATCACTGAATTA+GGG + chr3_3:73064261-73064280 Msa0470850:intron 25.0%
!! TCAAATTGACTTTACAACTT+TGG + chr3_3:73064503-73064522 Msa0470850:intron 25.0%
!! TTTTTGTATCTTAGACTGTT+AGG + chr3_3:73064610-73064629 Msa0470850:intron 25.0%
! TACTAATTTCAATACCAAGT+AGG - chr3_3:73064824-73064843 None:intergenic 25.0%
! AACGGTTAAAGAAATAAATG+TGG + chr3_3:73064894-73064913 Msa0470850:intron 25.0%
! TACACAAGTTATTTGATACT+AGG + chr3_3:73064959-73064978 Msa0470850:intron 25.0%
! ACACAAGTTATTTGATACTA+GGG + chr3_3:73064960-73064979 Msa0470850:intron 25.0%
!!! ATTATTTCTGCTGTATTGAT+AGG - chr3_3:73065296-73065315 None:intergenic 25.0%
! CAATCATGATATACTATATC+TGG + chr3_3:73065403-73065422 Msa0470850:intron 25.0%
! TATAACACACCAATACTATT+TGG - chr3_3:73065600-73065619 None:intergenic 25.0%
!! ATCTACTAGAGTACTAAAAA+AGG + chr3_3:73065744-73065763 Msa0470850:intron 25.0%
!! TCTACTAGAGTACTAAAAAA+GGG + chr3_3:73065745-73065764 Msa0470850:intron 25.0%
!!! TGTATTTTTTTGAGCTAGAA+TGG - chr3_3:73066079-73066098 None:intergenic 25.0%
! AATACAATAGAATGGAATGT+TGG + chr3_3:73066093-73066112 Msa0470850:CDS 25.0%
! ATACAATAGAATGGAATGTT+GGG + chr3_3:73066094-73066113 Msa0470850:CDS 25.0%
!! TTAGAAATCAAAGTTGTTTC+AGG - chr3_3:73066425-73066444 None:intergenic 25.0%
!! ATTAAGTTTCTTCTGTTTTC+AGG + chr3_3:73066652-73066671 Msa0470850:intron 25.0%
!! TTAAGTTTCTTCTGTTTTCA+GGG + chr3_3:73066653-73066672 Msa0470850:intron 25.0%
! TCTTCTTTCAAATGTATTAC+TGG + chr3_3:73066772-73066791 Msa0470850:CDS 25.0%
! TTTTGTGTTCTCAGTTTGAT+TGG - chr3_3:73063525-73063544 None:intergenic 30.0%
! CAAGAAAAAGAAGATAATGG+TGG + chr3_3:73063594-73063613 Msa0470850:five_prime_UTR 30.0%
TTACTGTTATGCATCTTCAA+TGG + chr3_3:73063648-73063667 Msa0470850:exon 30.0%
!! TTTGGTTGGTGAAAATGAAA+AGG - chr3_3:73063707-73063726 None:intergenic 30.0%
AAAGGGAATAATAGTTTGGT+TGG - chr3_3:73063721-73063740 None:intergenic 30.0%
!! GATGATGGCTTTAACATAAA+AGG - chr3_3:73063739-73063758 None:intergenic 30.0%
TAAACAAGTGAATTGTAGGA+AGG - chr3_3:73063808-73063827 None:intergenic 30.0%
CTCATAAACAAGTGAATTGT+AGG - chr3_3:73063812-73063831 None:intergenic 30.0%
CTACAATTCACTTGTTTATG+AGG + chr3_3:73063810-73063829 Msa0470850:CDS 30.0%
AAGCAGTACAAAGTATAGAA+AGG - chr3_3:73063912-73063931 None:intergenic 30.0%
AAGAGTAACTTGAGTAAACA+TGG - chr3_3:73064089-73064108 None:intergenic 30.0%
GGCAATACAAGTAAAAATGT+TGG - chr3_3:73064207-73064226 None:intergenic 30.0%
! TCTCATAAGCACATTAGTTT+CGG - chr3_3:73064369-73064388 None:intergenic 30.0%
TAGACAGATCTTCAATTGAA+AGG - chr3_3:73064397-73064416 None:intergenic 30.0%
TCAATTGAAGATCTGTCTAT+AGG + chr3_3:73064398-73064417 Msa0470850:intron 30.0%
GAATTCAAGAAAGAGAAAGA+AGG - chr3_3:73064485-73064504 None:intergenic 30.0%
TACTGCTATGAGAAATAACA+AGG - chr3_3:73064530-73064549 None:intergenic 30.0%
!! TTTGAAGCTTCAAATTTTGC+CGG - chr3_3:73064648-73064667 None:intergenic 30.0%
! ATTTGAAGCTTCAAAACTGA+AGG + chr3_3:73064653-73064672 Msa0470850:CDS 30.0%
AAAACTGAAGGTTGTTCTAT+TGG + chr3_3:73064665-73064684 Msa0470850:CDS 30.0%
!! AAACTTGTATTTTTGCGCAA+AGG - chr3_3:73065020-73065039 None:intergenic 30.0%
TAGATATCACATATTCTCCA+AGG + chr3_3:73065214-73065233 Msa0470850:CDS 30.0%
TAGGAAATGGATGCATTAAA+GGG - chr3_3:73065277-73065296 None:intergenic 30.0%
ATAGGAAATGGATGCATTAA+AGG - chr3_3:73065278-73065297 None:intergenic 30.0%
GCAGAAATAATATGAAAGCT+AGG + chr3_3:73065305-73065324 Msa0470850:intron 30.0%
TGAAATTGAAGTTACCAATG+TGG - chr3_3:73065469-73065488 None:intergenic 30.0%
ATGATTTAGATATGCTCTTC+AGG - chr3_3:73065824-73065843 None:intergenic 30.0%
TTGTTCTTGTATAGATTGCA+AGG + chr3_3:73065865-73065884 Msa0470850:intron 30.0%
GTACTCAAAGCAATTCAATA+TGG + chr3_3:73065993-73066012 Msa0470850:CDS 30.0%
ACTATAGAATCTAGCAATTC+TGG - chr3_3:73066044-73066063 None:intergenic 30.0%
AGCTAGAATGGAAATATACT+CGG - chr3_3:73066067-73066086 None:intergenic 30.0%
TACAATAGAATGGAATGTTG+GGG + chr3_3:73066095-73066114 Msa0470850:CDS 30.0%
TCACAAAATGGCTTAATGAA+AGG - chr3_3:73066243-73066262 None:intergenic 30.0%
ATCTTAAACAGTAAGGGATA+TGG - chr3_3:73066297-73066316 None:intergenic 30.0%
TTGACTGTGACAAAAGTAAA+AGG - chr3_3:73066381-73066400 None:intergenic 30.0%
TCAGACAAGAGTAAACAAAA+AGG - chr3_3:73066633-73066652 None:intergenic 30.0%
CAAATGTATTACTGGTAACT+TGG + chr3_3:73066780-73066799 Msa0470850:CDS 30.0%
TGTCAAGTAAATGTGTTAAC+AGG + chr3_3:73066964-73066983 Msa0470850:three_prime_UTR 30.0%
AAGTAAATGTGTTAACAGGT+TGG + chr3_3:73066968-73066987 Msa0470850:three_prime_UTR 30.0%
GATAACTCATATCATTGAGT+GGG - chr3_3:73067001-73067020 None:intergenic 30.0%
TGATAACTCATATCATTGAG+TGG - chr3_3:73067002-73067021 None:intergenic 30.0%
AGGAGAAAGAAAAGTGATGT+GGG - chr3_3:73063555-73063574 None:intergenic 35.0%
AAGGAGAAAGAAAAGTGATG+TGG - chr3_3:73063556-73063575 None:intergenic 35.0%
GTTAAGACAGAGAAGAAAGA+AGG - chr3_3:73063575-73063594 None:intergenic 35.0%
! GAAAAAGAAGATAATGGTGG+TGG + chr3_3:73063597-73063616 Msa0470850:five_prime_UTR 35.0%
GGAATTAGTAGTAGTGATTG+AGG - chr3_3:73063782-73063801 None:intergenic 35.0%
! CACTTGTTTATGAGGTATTC+AGG + chr3_3:73063818-73063837 Msa0470850:intron 35.0%
! TATGAGTGATGACTTCCTTT+TGG + chr3_3:73064297-73064316 Msa0470850:intron 35.0%
! CTCATAAGCACATTAGTTTC+GGG - chr3_3:73064368-73064387 None:intergenic 35.0%
ATTAGCTGTTAAGTCACAGT+GGG - chr3_3:73064742-73064761 None:intergenic 35.0%
! CTGCTCTAATTTGATGACAT+TGG - chr3_3:73064781-73064800 None:intergenic 35.0%
CAATGTCATCAAATTAGAGC+AGG + chr3_3:73064779-73064798 Msa0470850:CDS 35.0%
TTCAATACCAAGTAGGCAAA+AGG - chr3_3:73064817-73064836 None:intergenic 35.0%
CTACTAATGAACACCTTATG+TGG - chr3_3:73064994-73065013 None:intergenic 35.0%
! CACATAAGGTGTTCATTAGT+AGG + chr3_3:73064992-73065011 Msa0470850:intron 35.0%
TGACAAAGCAATGAACATGT+AGG - chr3_3:73065160-73065179 None:intergenic 35.0%
ATTCTCCAAGGAAATGACTT+TGG + chr3_3:73065226-73065245 Msa0470850:CDS 35.0%
ACATACCAAAGTCATTTCCT+TGG - chr3_3:73065234-73065253 None:intergenic 35.0%
! TCTGCTGTATTGATAGGAAA+TGG - chr3_3:73065290-73065309 None:intergenic 35.0%
! TGAGGCTTAAGTAGAAGTTT+TGG - chr3_3:73065374-73065393 None:intergenic 35.0%
TCATGATTGCACTTCATATG+AGG - chr3_3:73065392-73065411 None:intergenic 35.0%
! ATGTCTCTCTTTTCTCTTGT+GGG + chr3_3:73065572-73065591 Msa0470850:intron 35.0%
CTCTTAGTAGCGAATTCTTA+AGG + chr3_3:73065787-73065806 Msa0470850:intron 35.0%
TTAGTAGCGAATTCTTAAGG+AGG + chr3_3:73065790-73065809 Msa0470850:intron 35.0%
CCACGTGTCATAATACATTT+AGG - chr3_3:73065947-73065966 None:intergenic 35.0%
CCTAAATGTATTATGACACG+TGG + chr3_3:73065944-73065963 Msa0470850:intron 35.0%
AATGTATTATGACACGTGGT+TGG + chr3_3:73065948-73065967 Msa0470850:intron 35.0%
! ATTGAATTGCTTTGAGTACC+TGG - chr3_3:73065992-73066011 None:intergenic 35.0%
ACAATAGAATGGAATGTTGG+GGG + chr3_3:73066096-73066115 Msa0470850:CDS 35.0%
GATGCAATGGAGGTAATATT+AGG + chr3_3:73066128-73066147 Msa0470850:intron 35.0%
! GAAATCAAAGTTGTTTCAGG+AGG - chr3_3:73066422-73066441 None:intergenic 35.0%
GACAAAAAACCACATTGTTG+AGG + chr3_3:73066493-73066512 Msa0470850:intron 35.0%
CTAATCTGACCCTGTTAAAT+TGG + chr3_3:73066564-73066583 Msa0470850:intron 35.0%
GTAAACAAAAAGGCAAGCAA+AGG - chr3_3:73066623-73066642 None:intergenic 35.0%
! GCAATTTTACATTGTCCTCT+TGG - chr3_3:73066890-73066909 None:intergenic 35.0%
AGCATATTTCTTGTGCACAA+AGG + chr3_3:73066914-73066933 Msa0470850:three_prime_UTR 35.0%
! CTCAGTTTGATTGGTTCATG+TGG - chr3_3:73063516-73063535 None:intergenic 40.0%
AGTAGTAGTGATTGAGGAAG+AGG - chr3_3:73063776-73063795 None:intergenic 40.0%
AAGTGAATTGTAGGAAGGAG+TGG - chr3_3:73063803-73063822 None:intergenic 40.0%
AAACACAATGCTGGGTCTTT+GGG - chr3_3:73064006-73064025 None:intergenic 40.0%
AAAACACAATGCTGGGTCTT+TGG - chr3_3:73064007-73064026 None:intergenic 40.0%
GATGGTCAAAACACAATGCT+GGG - chr3_3:73064014-73064033 None:intergenic 40.0%
AGATGGTCAAAACACAATGC+TGG - chr3_3:73064015-73064034 None:intergenic 40.0%
CATGGAATTTCACATGCACA+TGG - chr3_3:73064071-73064090 None:intergenic 40.0%
!!! TGATGACTTCCTTTTGGTTC+TGG + chr3_3:73064303-73064322 Msa0470850:intron 40.0%
TACTGGATTCCAGAACCAAA+AGG - chr3_3:73064315-73064334 None:intergenic 40.0%
ATCTTAGACTGTTAGGCTCT+TGG + chr3_3:73064617-73064636 Msa0470850:intron 40.0%
TCTTAGACTGTTAGGCTCTT+GGG + chr3_3:73064618-73064637 Msa0470850:intron 40.0%
TGGGATAGAATGTAGGTTCT+TGG - chr3_3:73064723-73064742 None:intergenic 40.0%
! GATTAGCTGTTAAGTCACAG+TGG - chr3_3:73064743-73064762 None:intergenic 40.0%
! GTCTTTACCTTTTGCCTACT+TGG + chr3_3:73064807-73064826 Msa0470850:intron 40.0%
AAATGCTAACAAGCGCCTTT+AGG + chr3_3:73064869-73064888 Msa0470850:intron 40.0%
AATGCTAACAAGCGCCTTTA+GGG + chr3_3:73064870-73064889 Msa0470850:intron 40.0%
TTCTTTAACCGTTGCCCTAA+AGG - chr3_3:73064887-73064906 None:intergenic 40.0%
AATGAACACCTTATGTGGTC+AGG - chr3_3:73064989-73065008 None:intergenic 40.0%
CATTTCACAGAAGGAATGGA+AGG - chr3_3:73065068-73065087 None:intergenic 40.0%
CTTCCATTCCTTCTGTGAAA+TGG + chr3_3:73065066-73065085 Msa0470850:intron 40.0%
AGGATGATGTTGTAGCTGAA+TGG + chr3_3:73065111-73065130 Msa0470850:CDS 40.0%
CATGTTCATTGCTTTGTCAG+TGG + chr3_3:73065161-73065180 Msa0470850:CDS 40.0%
AAAGCTAGGACTGATCTAAG+AGG + chr3_3:73065319-73065338 Msa0470850:intron 40.0%
! GCAAATTAGAGCATCCACAT+TGG + chr3_3:73065452-73065471 Msa0470850:intron 40.0%
CTTCAATTTCAAACCCCGTT+AGG + chr3_3:73065478-73065497 Msa0470850:intron 40.0%
CTCCAAGTACCTCATAAGTT+GGG - chr3_3:73065506-73065525 None:intergenic 40.0%
TCTCCAAGTACCTCATAAGT+TGG - chr3_3:73065507-73065526 None:intergenic 40.0%
!! GATGGAAAGGAGTACCTATT+GGG + chr3_3:73065529-73065548 Msa0470850:intron 40.0%
TACAAGGCTTTCTTCCCAAT+AGG - chr3_3:73065546-73065565 None:intergenic 40.0%
! GATGTCTCTCTTTTCTCTTG+TGG + chr3_3:73065571-73065590 Msa0470850:intron 40.0%
TTGTGGGCTCCAAATAGTAT+TGG + chr3_3:73065588-73065607 Msa0470850:intron 40.0%
! AGGGTTACTTTAGAGAGATG+TGG + chr3_3:73065666-73065685 Msa0470850:intron 40.0%
TAGAGAGATGTGGTGCTTAT+TGG + chr3_3:73065676-73065695 Msa0470850:intron 40.0%
AAAAGGGTTGCTACATCAAG+AGG + chr3_3:73065761-73065780 Msa0470850:intron 40.0%
!! ACGTGGTTGGATTCTTGTTT+TGG + chr3_3:73065961-73065980 Msa0470850:intron 40.0%
!!! CGTGGTTGGATTCTTGTTTT+GGG + chr3_3:73065962-73065981 Msa0470850:intron 40.0%
!! TAGCTTGTTCCTCAACAATG+TGG - chr3_3:73066505-73066524 None:intergenic 40.0%
GAAGAAAGGCAAAAAGAGCT+TGG - chr3_3:73066757-73066776 None:intergenic 40.0%
! TTCTAGCTGAGGAAAGAATC+GGG - chr3_3:73066821-73066840 None:intergenic 40.0%
! GTTCTAGCTGAGGAAAGAAT+CGG - chr3_3:73066822-73066841 None:intergenic 40.0%
TCTTTCCTCAGCTAGAACTT+TGG + chr3_3:73066824-73066843 Msa0470850:exon 40.0%
CTTTCCTCAGCTAGAACTTT+GGG + chr3_3:73066825-73066844 Msa0470850:exon 40.0%
GTGGCATGTGAAACATGAAG+AGG + chr3_3:73063616-73063635 Msa0470850:five_prime_UTR 45.0%
!! GAGGAGCATCTGAAAGATGA+TGG - chr3_3:73063754-73063773 None:intergenic 45.0%
AGTAGTGATTGAGGAAGAGG+AGG - chr3_3:73063773-73063792 None:intergenic 45.0%
! GAAGCTTCAAATTTTGCCGG+AGG - chr3_3:73064645-73064664 None:intergenic 45.0%
GTCACAGTGGGATAGAATGT+AGG - chr3_3:73064730-73064749 None:intergenic 45.0%
! AAGGCGCTTGTTAGCATTTG+TGG - chr3_3:73064868-73064887 None:intergenic 45.0%
! CTGCCATTTCACAGAAGGAA+TGG - chr3_3:73065072-73065091 None:intergenic 45.0%
! CTCAACTGCCATTTCACAGA+AGG - chr3_3:73065077-73065096 None:intergenic 45.0%
TCTGTGAAATGGCAGTTGAG+AGG + chr3_3:73065077-73065096 Msa0470850:intron 45.0%
CTGTGAAATGGCAGTTGAGA+GGG + chr3_3:73065078-73065097 Msa0470850:intron 45.0%
GTTGAGAGGGTGGTATATGA+AGG + chr3_3:73065091-73065110 Msa0470850:intron 45.0%
TAAACTCAGCAGCTAGATCC+AGG - chr3_3:73065196-73065215 None:intergenic 45.0%
! TCATAAGTTGGGTGCCTAAC+GGG - chr3_3:73065495-73065514 None:intergenic 45.0%
! CTCATAAGTTGGGTGCCTAA+CGG - chr3_3:73065496-73065515 None:intergenic 45.0%
! CACCCAACTTATGAGGTACT+TGG + chr3_3:73065501-73065520 Msa0470850:intron 45.0%
!! CGATGGAAAGGAGTACCTAT+TGG + chr3_3:73065528-73065547 Msa0470850:intron 45.0%
AGAGAGACATCAGCTGTACA+AGG - chr3_3:73065562-73065581 None:intergenic 45.0%
!!! ATTCTTGTTTTGGGCATGCC+AGG + chr3_3:73065971-73065990 Msa0470850:intron 45.0%
CTAGCAATTCTGGATGCTCT+TGG - chr3_3:73066034-73066053 None:intergenic 45.0%
ACCTCCATTGCATCCTTTAG+AGG - chr3_3:73066122-73066141 None:intergenic 45.0%
CTAGTTCATGTCACTCTTGC+TGG + chr3_3:73066522-73066541 Msa0470850:intron 45.0%
!! CTGTTTTCAGGGAAAACGAG+CGG + chr3_3:73066664-73066683 Msa0470850:intron 45.0%
AAACGAGCGGATCAGTTACA+AGG + chr3_3:73066677-73066696 Msa0470850:CDS 45.0%
AACGAGCGGATCAGTTACAA+GGG + chr3_3:73066678-73066697 Msa0470850:CDS 45.0%
AGATCGTCCTCCTGAAAAGT+TGG + chr3_3:73066712-73066731 Msa0470850:CDS 45.0%
GATCGTCCTCCTGAAAAGTT+GGG + chr3_3:73066713-73066732 Msa0470850:CDS 45.0%
! ATTGGGCTTCCCAACTTTTC+AGG - chr3_3:73066725-73066744 None:intergenic 45.0%
GAGCTTGGAAGTTGGACATT+GGG - chr3_3:73066742-73066761 None:intergenic 45.0%
AGAGCTTGGAAGTTGGACAT+TGG - chr3_3:73066743-73066762 None:intergenic 45.0%
GGCAAAAAGAGCTTGGAAGT+TGG - chr3_3:73066750-73066769 None:intergenic 45.0%
CTTGCAAGAATGACTCCAAG+AGG + chr3_3:73066872-73066891 Msa0470850:three_prime_UTR 45.0%
!! AACAAGCGCCTTTAGGGCAA+CGG + chr3_3:73064876-73064895 Msa0470850:intron 50.0%
! TAGGGTGTCCTGACCACATA+AGG + chr3_3:73064978-73064997 Msa0470850:intron 50.0%
TGAAATGGCAGTTGAGAGGG+TGG + chr3_3:73065081-73065100 Msa0470850:intron 50.0%
! CATAAGTTGGGTGCCTAACG+GGG - chr3_3:73065494-73065513 None:intergenic 50.0%
CGTTAGGCACCCAACTTATG+AGG + chr3_3:73065494-73065513 Msa0470850:intron 50.0%
! ATGAGGTACTTGGAGAGCGA+TGG + chr3_3:73065511-73065530 Msa0470850:intron 50.0%
GTACTTGGAGAGCGATGGAA+AGG + chr3_3:73065516-73065535 Msa0470850:intron 50.0%
! GCCTCTAAAGGATGCAATGG+AGG + chr3_3:73066118-73066137 Msa0470850:CDS 50.0%
TCCTCAGCTAGAACTTTGGG+TGG + chr3_3:73066828-73066847 Msa0470850:exon 50.0%
! ACCACCCAAAGTTCTAGCTG+AGG - chr3_3:73066832-73066851 None:intergenic 50.0%
TGTTAGGCTCTTGGGTCCTC+CGG + chr3_3:73064626-73064645 Msa0470850:CDS 55.0%
GCAGCTAGATCCAGGAAGGT+GGG - chr3_3:73065188-73065207 None:intergenic 55.0%
AGCAGCTAGATCCAGGAAGG+TGG - chr3_3:73065189-73065208 None:intergenic 55.0%
CTCAGCAGCTAGATCCAGGA+AGG - chr3_3:73065192-73065211 None:intergenic 55.0%
AAAGCCTAGCTCGAGTCTGC+GGG - chr3_3:73065349-73065368 None:intergenic 55.0%
CAAAGCCTAGCTCGAGTCTG+CGG - chr3_3:73065350-73065369 None:intergenic 55.0%
GGAATGTTGGGGGCCTCTAA+AGG + chr3_3:73066106-73066125 Msa0470850:CDS 55.0%
! GGGGCCTCTAAAGGATGCAA+TGG + chr3_3:73066115-73066134 Msa0470850:CDS 55.0%
!! GGGCTTCCCAACTTTTCAGG+AGG - chr3_3:73066722-73066741 None:intergenic 55.0%
TGTCAGTGGTCCCACCTTCC+TGG + chr3_3:73065175-73065194 Msa0470850:CDS 60.0%
TACTCCCGCAGACTCGAGCT+AGG + chr3_3:73065342-73065361 Msa0470850:intron 60.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 73063511 73067035 73063511 ID=Msa0470850;Name=Msa0470850
chr3_3 mRNA 73063511 73067035 73063511 ID=Msa0470850-mRNA-1;Parent=Msa0470850;Name=Msa0470850-mRNA-1;_AED=0.02;_eAED=0.02;_QI=156|1|1|1|1|1|5|197|269
chr3_3 exon 73063511 73063831 73063511 ID=Msa0470850-mRNA-1:exon:18383;Parent=Msa0470850-mRNA-1
chr3_3 exon 73064624 73064800 73064624 ID=Msa0470850-mRNA-1:exon:18384;Parent=Msa0470850-mRNA-1
chr3_3 exon 73065092 73065247 73065092 ID=Msa0470850-mRNA-1:exon:18385;Parent=Msa0470850-mRNA-1
chr3_3 exon 73065993 73066139 73065993 ID=Msa0470850-mRNA-1:exon:18386;Parent=Msa0470850-mRNA-1
chr3_3 exon 73066674 73067035 73066674 ID=Msa0470850-mRNA-1:exon:18387;Parent=Msa0470850-mRNA-1
chr3_3 five_prime_UTR 73063511 73063666 73063511 ID=Msa0470850-mRNA-1:five_prime_utr;Parent=Msa0470850-mRNA-1
chr3_3 CDS 73063667 73063831 73063667 ID=Msa0470850-mRNA-1:cds;Parent=Msa0470850-mRNA-1
chr3_3 CDS 73064624 73064800 73064624 ID=Msa0470850-mRNA-1:cds;Parent=Msa0470850-mRNA-1
chr3_3 CDS 73065092 73065247 73065092 ID=Msa0470850-mRNA-1:cds;Parent=Msa0470850-mRNA-1
chr3_3 CDS 73065993 73066139 73065993 ID=Msa0470850-mRNA-1:cds;Parent=Msa0470850-mRNA-1
chr3_3 CDS 73066674 73066838 73066674 ID=Msa0470850-mRNA-1:cds;Parent=Msa0470850-mRNA-1
chr3_3 three_prime_UTR 73066839 73067035 73066839 ID=Msa0470850-mRNA-1:three_prime_utr;Parent=Msa0470850-mRNA-1
Gene Sequence

>Msa0470850

ATGGCATCATCATTATGTTATAATAATCTTTACAATGCCTTTTCATTTTCACCAACCAAACTATTATTCCCTTTTATGTTAAAGCCATCATCTTTCAGATGCTCCTCCTCTTCCTCAATCACTACTACTAATTCCACTCCTTCCTACAATTCACTTGTTTATGAGACTGTTAGGCTCTTGGGTCCTCCGGCAAAATTTGAAGCTTCAAAACTGAAGGTTGTTCTATTGGAAGATCAGATAAACAGATATGCAAGTATTATTCCAAGAACCTACATTCTATCCCACTGTGACTTAACAGCTAATCTCACTTTAGCTGTTTCCAATGTCATCAAATTAGAGCAGTTGAGAGGGTGGTATATGAAGGATGATGTTGTAGCTGAATGGAAGAAAGTGAAAAATGAAATGTGCCTACATGTTCATTGCTTTGTCAGTGGTCCCACCTTCCTGGATCTAGCTGCTGAGTTTAGATATCACATATTCTCCAAGGAAATGACTTTGGTACTCAAAGCAATTCAATATGGAGATTCTGTACTTTTCCAAGAGCATCCAGAATTGCTAGATTCTATAGTCCGAGTATATTTCCATTCTAGCTCAAAAAAATACAATAGAATGGAATGTTGGGGGCCTCTAAAGGATGCAATGGAGGGAAAACGAGCGGATCAGTTACAAGGGTTGATAAACAGAGATCGTCCTCCTGAAAAGTTGGGAAGCCCAATGTCCAACTTCCAAGCTCTTTTTGCCTTTCTTCTTTCAAATGTATTACTGGTAACTTGGTTGATTTGTTTATATCCCGATTCTTTCCTCAGCTAG

Protein sequence

>Msa0470850

MASSLCYNNLYNAFSFSPTKLLFPFMLKPSSFRCSSSSSITTTNSTPSYNSLVYETVRLLGPPAKFEASKLKVVLLEDQINRYASIIPRTYILSHCDLTANLTLAVSNVIKLEQLRGWYMKDDVVAEWKKVKNEMCLHVHCFVSGPTFLDLAAEFRYHIFSKEMTLVLKAIQYGDSVLFQEHPELLDSIVRVYFHSSSKKYNRMECWGPLKDAMEGKRADQLQGLINRDRPPEKLGSPMSNFQALFAFLLSNVLLVTWLICLYPDSFLS*