Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068194.t1 | XP_013467369.1 | 97.6 | 414 | 10 | 0 | 1 | 414 | 1 | 414 | 5.80E-216 | 760 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068194.t1 | F4IZC4 | 62.8 | 363 | 130 | 2 | 53 | 413 | 74 | 433 | 4.3e-119 | 429.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068194.t1 | A0A072VIJ8 | 97.6 | 414 | 10 | 0 | 1 | 414 | 1 | 414 | 4.2e-216 | 760.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene068194 | 0.888371 | 6.26E-73 | -1.69E-46 |
| MS.gene049173 | MS.gene068194 | 0.812483 | 4.14E-51 | -1.69E-46 |
| MS.gene049217 | MS.gene068194 | 0.853251 | 2.70E-61 | -1.69E-46 |
| MS.gene049222 | MS.gene068194 | 0.869286 | 3.47E-66 | -1.69E-46 |
| MS.gene049232 | MS.gene068194 | 0.868272 | 7.39E-66 | -1.69E-46 |
| MS.gene049285 | MS.gene068194 | 0.888125 | 7.79E-73 | -1.69E-46 |
| MS.gene049320 | MS.gene068194 | 0.874356 | 7.20E-68 | -1.69E-46 |
| MS.gene04939 | MS.gene068194 | 0.807645 | 4.57E-50 | -1.69E-46 |
| MS.gene049609 | MS.gene068194 | 0.844093 | 9.36E-59 | -1.69E-46 |
| MS.gene049627 | MS.gene068194 | 0.832169 | 1.10E-55 | -1.69E-46 |
| MS.gene049633 | MS.gene068194 | 0.843017 | 1.81E-58 | -1.69E-46 |
| MS.gene049805 | MS.gene068194 | 0.809439 | 1.89E-50 | -1.69E-46 |
| MS.gene049865 | MS.gene068194 | 0.804614 | 1.98E-49 | -1.69E-46 |
| MS.gene05010 | MS.gene068194 | 0.900385 | 7.72E-78 | -1.69E-46 |
| MS.gene050163 | MS.gene068194 | 0.861323 | 1.11E-63 | -1.69E-46 |
| MS.gene050165 | MS.gene068194 | 0.864633 | 1.06E-64 | -1.69E-46 |
| MS.gene050170 | MS.gene068194 | 0.86454 | 1.13E-64 | -1.69E-46 |
| MS.gene050216 | MS.gene068194 | 0.85089 | 1.27E-60 | -1.69E-46 |
| MS.gene050323 | MS.gene068194 | 0.855691 | 5.32E-62 | -1.69E-46 |
| MS.gene050333 | MS.gene068194 | 0.860162 | 2.50E-63 | -1.69E-46 |
| MS.gene050444 | MS.gene068194 | 0.805368 | 1.38E-49 | -1.69E-46 |
| MS.gene050496 | MS.gene068194 | 0.848007 | 8.06E-60 | -1.69E-46 |
| MS.gene050504 | MS.gene068194 | 0.901267 | 3.18E-78 | -1.69E-46 |
| MS.gene050518 | MS.gene068194 | 0.867785 | 1.06E-65 | -1.69E-46 |
| MS.gene050577 | MS.gene068194 | 0.840887 | 6.63E-58 | -1.69E-46 |
| MS.gene050612 | MS.gene068194 | 0.889349 | 2.62E-73 | -1.69E-46 |
| MS.gene050662 | MS.gene068194 | 0.812061 | 5.12E-51 | -1.69E-46 |
| MS.gene050675 | MS.gene068194 | 0.865551 | 5.44E-65 | -1.69E-46 |
| MS.gene050699 | MS.gene068194 | 0.862012 | 6.85E-64 | -1.69E-46 |
| MS.gene050747 | MS.gene068194 | 0.824686 | 7.05E-54 | -1.69E-46 |
| MS.gene050772 | MS.gene068194 | 0.872435 | 3.19E-67 | -1.69E-46 |
| MS.gene05080 | MS.gene068194 | 0.846918 | 1.61E-59 | -1.69E-46 |
| MS.gene050868 | MS.gene068194 | 0.876045 | 1.91E-68 | -1.69E-46 |
| MS.gene050871 | MS.gene068194 | 0.874547 | 6.20E-68 | -1.69E-46 |
| MS.gene050876 | MS.gene068194 | 0.865852 | 4.37E-65 | -1.69E-46 |
| MS.gene05087 | MS.gene068194 | 0.809725 | 1.64E-50 | -1.69E-46 |
| MS.gene050904 | MS.gene068194 | 0.864352 | 1.29E-64 | -1.69E-46 |
| MS.gene050950 | MS.gene068194 | 0.812988 | 3.21E-51 | -1.69E-46 |
| MS.gene050986 | MS.gene068194 | 0.888114 | 7.87E-73 | -1.69E-46 |
| MS.gene05100 | MS.gene068194 | 0.834283 | 3.28E-56 | -1.69E-46 |
| MS.gene051268 | MS.gene068194 | 0.832742 | 7.94E-56 | -1.69E-46 |
| MS.gene051317 | MS.gene068194 | 0.835173 | 1.96E-56 | -1.69E-46 |
| MS.gene051509 | MS.gene068194 | 0.820638 | 6.17E-53 | -1.69E-46 |
| MS.gene051551 | MS.gene068194 | 0.860707 | 1.71E-63 | -1.69E-46 |
| MS.gene051666 | MS.gene068194 | 0.802319 | 5.94E-49 | -1.69E-46 |
| MS.gene051810 | MS.gene068194 | 0.824312 | 8.64E-54 | -1.69E-46 |
| MS.gene051838 | MS.gene068194 | 0.801554 | 8.52E-49 | -1.69E-46 |
| MS.gene051858 | MS.gene068194 | 0.823238 | 1.54E-53 | -1.69E-46 |
| MS.gene051874 | MS.gene068194 | 0.821578 | 3.75E-53 | -1.69E-46 |
| MS.gene051949 | MS.gene068194 | 0.810147 | 1.33E-50 | -1.69E-46 |
| MS.gene052164 | MS.gene068194 | 0.892352 | 1.72E-74 | -1.69E-46 |
| MS.gene052482 | MS.gene068194 | 0.856655 | 2.78E-62 | -1.69E-46 |
| MS.gene052486 | MS.gene068194 | 0.863147 | 3.06E-64 | -1.69E-46 |
| MS.gene052503 | MS.gene068194 | 0.827865 | 1.24E-54 | -1.69E-46 |
| MS.gene052504 | MS.gene068194 | 0.829388 | 5.29E-55 | -1.69E-46 |
| MS.gene052506 | MS.gene068194 | 0.8395 | 1.53E-57 | -1.69E-46 |
| MS.gene052615 | MS.gene068194 | 0.810393 | 1.18E-50 | -1.69E-46 |
| MS.gene052670 | MS.gene068194 | 0.80135 | 9.38E-49 | -1.69E-46 |
| MS.gene052822 | MS.gene068194 | 0.84927 | 3.60E-60 | -1.69E-46 |
| MS.gene052823 | MS.gene068194 | 0.821796 | 3.34E-53 | -1.69E-46 |
| MS.gene052825 | MS.gene068194 | 0.819257 | 1.28E-52 | -1.69E-46 |
| MS.gene052916 | MS.gene068194 | 0.816407 | 5.62E-52 | -1.69E-46 |
| MS.gene052966 | MS.gene068194 | 0.86488 | 8.84E-65 | -1.69E-46 |
| MS.gene053203 | MS.gene068194 | 0.861452 | 1.02E-63 | -1.69E-46 |
| MS.gene053207 | MS.gene068194 | 0.834538 | 2.83E-56 | -1.69E-46 |
| MS.gene053213 | MS.gene068194 | 0.849624 | 2.87E-60 | -1.69E-46 |
| MS.gene053284 | MS.gene068194 | 0.80872 | 2.70E-50 | -1.69E-46 |
| MS.gene053286 | MS.gene068194 | 0.849485 | 3.14E-60 | -1.69E-46 |
| MS.gene053420 | MS.gene068194 | -0.808442 | 3.09E-50 | -1.69E-46 |
| MS.gene053436 | MS.gene068194 | 0.819159 | 1.34E-52 | -1.69E-46 |
| MS.gene053480 | MS.gene068194 | 0.82864 | 8.03E-55 | -1.69E-46 |
| MS.gene053549 | MS.gene068194 | -0.804338 | 2.27E-49 | -1.69E-46 |
| MS.gene053574 | MS.gene068194 | 0.844594 | 6.86E-59 | -1.69E-46 |
| MS.gene053626 | MS.gene068194 | 0.844383 | 7.82E-59 | -1.69E-46 |
| MS.gene053632 | MS.gene068194 | 0.85936 | 4.36E-63 | -1.69E-46 |
| MS.gene053633 | MS.gene068194 | 0.810459 | 1.14E-50 | -1.69E-46 |
| MS.gene053824 | MS.gene068194 | 0.85766 | 1.40E-62 | -1.69E-46 |
| MS.gene053916 | MS.gene068194 | 0.863205 | 2.94E-64 | -1.69E-46 |
| MS.gene054003 | MS.gene068194 | 0.824755 | 6.80E-54 | -1.69E-46 |
| MS.gene054408 | MS.gene068194 | 0.80416 | 2.47E-49 | -1.69E-46 |
| MS.gene054595 | MS.gene068194 | 0.858912 | 5.95E-63 | -1.69E-46 |
| MS.gene054600 | MS.gene068194 | 0.851481 | 8.63E-61 | -1.69E-46 |
| MS.gene054642 | MS.gene068194 | 0.858418 | 8.35E-63 | -1.69E-46 |
| MS.gene05470 | MS.gene068194 | 0.860663 | 1.76E-63 | -1.69E-46 |
| MS.gene054927 | MS.gene068194 | 0.81037 | 1.19E-50 | -1.69E-46 |
| MS.gene054954 | MS.gene068194 | 0.898791 | 3.75E-77 | -1.69E-46 |
| MS.gene05505 | MS.gene068194 | 0.809094 | 2.24E-50 | -1.69E-46 |
| MS.gene055206 | MS.gene068194 | 0.815798 | 7.69E-52 | -1.69E-46 |
| MS.gene055362 | MS.gene068194 | 0.895571 | 8.44E-76 | -1.69E-46 |
| MS.gene055502 | MS.gene068194 | 0.873144 | 1.85E-67 | -1.69E-46 |
| MS.gene055577 | MS.gene068194 | 0.873898 | 1.03E-67 | -1.69E-46 |
| MS.gene055634 | MS.gene068194 | 0.824438 | 8.07E-54 | -1.69E-46 |
| MS.gene055638 | MS.gene068194 | 0.813623 | 2.33E-51 | -1.69E-46 |
| MS.gene055722 | MS.gene068194 | 0.833982 | 3.90E-56 | -1.69E-46 |
| MS.gene055748 | MS.gene068194 | 0.85061 | 1.52E-60 | -1.69E-46 |
| MS.gene055750 | MS.gene068194 | 0.851001 | 1.18E-60 | -1.69E-46 |
| MS.gene055751 | MS.gene068194 | 0.859614 | 3.66E-63 | -1.69E-46 |
| MS.gene055776 | MS.gene068194 | 0.869697 | 2.55E-66 | -1.69E-46 |
| MS.gene055849 | MS.gene068194 | 0.828756 | 7.53E-55 | -1.69E-46 |
| MS.gene05589 | MS.gene068194 | 0.864511 | 1.15E-64 | -1.69E-46 |
| MS.gene055941 | MS.gene068194 | 0.824912 | 6.24E-54 | -1.69E-46 |
| MS.gene056046 | MS.gene068194 | 0.846377 | 2.26E-59 | -1.69E-46 |
| MS.gene056083 | MS.gene068194 | 0.802131 | 6.49E-49 | -1.69E-46 |
| MS.gene056374 | MS.gene068194 | 0.829275 | 5.64E-55 | -1.69E-46 |
| MS.gene056409 | MS.gene068194 | 0.833064 | 6.61E-56 | -1.69E-46 |
| MS.gene056449 | MS.gene068194 | 0.808973 | 2.38E-50 | -1.69E-46 |
| MS.gene056450 | MS.gene068194 | 0.836362 | 9.78E-57 | -1.69E-46 |
| MS.gene056504 | MS.gene068194 | 0.891292 | 4.54E-74 | -1.69E-46 |
| MS.gene056510 | MS.gene068194 | 0.878597 | 2.47E-69 | -1.69E-46 |
| MS.gene056610 | MS.gene068194 | 0.821674 | 3.56E-53 | -1.69E-46 |
| MS.gene056657 | MS.gene068194 | 0.868634 | 5.64E-66 | -1.69E-46 |
| MS.gene056692 | MS.gene068194 | 0.828566 | 8.37E-55 | -1.69E-46 |
| MS.gene056878 | MS.gene068194 | 0.885526 | 7.54E-72 | -1.69E-46 |
| MS.gene056898 | MS.gene068194 | 0.833919 | 4.04E-56 | -1.69E-46 |
| MS.gene057076 | MS.gene068194 | 0.813312 | 2.73E-51 | -1.69E-46 |
| MS.gene057086 | MS.gene068194 | 0.801582 | 8.41E-49 | -1.69E-46 |
| MS.gene057416 | MS.gene068194 | 0.834796 | 2.44E-56 | -1.69E-46 |
| MS.gene057687 | MS.gene068194 | 0.805839 | 1.10E-49 | -1.69E-46 |
| MS.gene057734 | MS.gene068194 | 0.804134 | 2.50E-49 | -1.69E-46 |
| MS.gene057831 | MS.gene068194 | 0.824475 | 7.91E-54 | -1.69E-46 |
| MS.gene057857 | MS.gene068194 | 0.817267 | 3.60E-52 | -1.69E-46 |
| MS.gene05787 | MS.gene068194 | 0.81772 | 2.85E-52 | -1.69E-46 |
| MS.gene057926 | MS.gene068194 | 0.81427 | 1.68E-51 | -1.69E-46 |
| MS.gene058157 | MS.gene068194 | 0.813076 | 3.07E-51 | -1.69E-46 |
| MS.gene058334 | MS.gene068194 | -0.81308 | 3.07E-51 | -1.69E-46 |
| MS.gene058338 | MS.gene068194 | 0.834458 | 2.96E-56 | -1.69E-46 |
| MS.gene05837 | MS.gene068194 | 0.838412 | 2.92E-57 | -1.69E-46 |
| MS.gene058419 | MS.gene068194 | 0.874876 | 4.79E-68 | -1.69E-46 |
| MS.gene058544 | MS.gene068194 | 0.820751 | 5.81E-53 | -1.69E-46 |
| MS.gene058723 | MS.gene068194 | 0.833156 | 6.27E-56 | -1.69E-46 |
| MS.gene058773 | MS.gene068194 | 0.895423 | 9.73E-76 | -1.69E-46 |
| MS.gene058838 | MS.gene068194 | 0.850455 | 1.68E-60 | -1.69E-46 |
| MS.gene058978 | MS.gene068194 | -0.812735 | 3.65E-51 | -1.69E-46 |
| MS.gene059022 | MS.gene068194 | 0.903911 | 2.12E-79 | -1.69E-46 |
| MS.gene059023 | MS.gene068194 | 0.86654 | 2.65E-65 | -1.69E-46 |
| MS.gene05913 | MS.gene068194 | 0.83291 | 7.22E-56 | -1.69E-46 |
| MS.gene059367 | MS.gene068194 | 0.826022 | 3.41E-54 | -1.69E-46 |
| MS.gene059677 | MS.gene068194 | 0.890531 | 9.06E-74 | -1.69E-46 |
| MS.gene059718 | MS.gene068194 | 0.883286 | 5.10E-71 | -1.69E-46 |
| MS.gene059756 | MS.gene068194 | 0.82667 | 2.39E-54 | -1.69E-46 |
| MS.gene059801 | MS.gene068194 | 0.836327 | 9.99E-57 | -1.69E-46 |
| MS.gene059837 | MS.gene068194 | 0.8386 | 2.61E-57 | -1.69E-46 |
| MS.gene059865 | MS.gene068194 | 0.873031 | 2.01E-67 | -1.69E-46 |
| MS.gene059902 | MS.gene068194 | 0.818515 | 1.88E-52 | -1.69E-46 |
| MS.gene06000 | MS.gene068194 | 0.837949 | 3.84E-57 | -1.69E-46 |
| MS.gene060482 | MS.gene068194 | 0.834669 | 2.62E-56 | -1.69E-46 |
| MS.gene060595 | MS.gene068194 | -0.822965 | 1.79E-53 | -1.69E-46 |
| MS.gene060703 | MS.gene068194 | 0.853851 | 1.82E-61 | -1.69E-46 |
| MS.gene060762 | MS.gene068194 | 0.879733 | 9.79E-70 | -1.69E-46 |
| MS.gene060778 | MS.gene068194 | 0.877454 | 6.20E-69 | -1.69E-46 |
| MS.gene06077 | MS.gene068194 | 0.880888 | 3.79E-70 | -1.69E-46 |
| MS.gene06092 | MS.gene068194 | 0.813883 | 2.04E-51 | -1.69E-46 |
| MS.gene060982 | MS.gene068194 | 0.869208 | 3.68E-66 | -1.69E-46 |
| MS.gene061150 | MS.gene068194 | 0.839641 | 1.40E-57 | -1.69E-46 |
| MS.gene061171 | MS.gene068194 | 0.832276 | 1.04E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068194.t1 | MTR_1g050462 | 97.585 | 414 | 10 | 0 | 1 | 414 | 1 | 414 | 0.0 | 793 |
| MS.gene068194.t1 | MTR_1g050462 | 95.761 | 401 | 17 | 0 | 1 | 401 | 1 | 401 | 0.0 | 727 |
| MS.gene068194.t1 | MTR_1g050462 | 96.215 | 317 | 12 | 0 | 1 | 317 | 1 | 317 | 0.0 | 600 |
| MS.gene068194.t1 | MTR_1g050462 | 92.884 | 267 | 19 | 0 | 1 | 267 | 1 | 267 | 1.27e-174 | 489 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068194.t1 | AT3G56160 | 63.388 | 366 | 129 | 3 | 51 | 414 | 47 | 409 | 1.39e-148 | 428 |
| MS.gene068194.t1 | AT3G56160 | 63.388 | 366 | 127 | 4 | 53 | 414 | 74 | 436 | 2.26e-147 | 426 |
| MS.gene068194.t1 | AT3G56160 | 62.541 | 307 | 112 | 1 | 51 | 357 | 47 | 350 | 1.21e-120 | 355 |
| MS.gene068194.t1 | AT3G56160 | 64.639 | 263 | 91 | 1 | 53 | 313 | 74 | 336 | 1.27e-104 | 313 |
| MS.gene068194.t1 | AT3G56160 | 59.535 | 215 | 87 | 0 | 51 | 265 | 47 | 261 | 1.66e-73 | 233 |
Find 109 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATATCATGTATCCAAAAT+TGG | 0.149667 | 1.4:-36555823 | MS.gene068194:CDS |
| AATTCCAAACGGCCCAATTT+TGG | 0.174825 | 1.4:+36555810 | None:intergenic |
| GCATGGCCTGTTGGACTCTT+TGG | 0.175566 | 1.4:-36555625 | MS.gene068194:CDS |
| CAATTACCTTTCCCAAAATA+AGG | 0.180711 | 1.4:+36551475 | None:intergenic |
| ACTTCTTCATCTGACCTTAT+TGG | 0.189310 | 1.4:-36547335 | MS.gene068194:CDS |
| TGTGGTGCATTTGGAGAATC+TGG | 0.261628 | 1.4:-36547007 | MS.gene068194:CDS |
| ATTTGGAGAATCTGGGTTAC+TGG | 0.268679 | 1.4:-36546999 | MS.gene068194:CDS |
| GCCCCTAGCAAAGCTCAAAA+TGG | 0.283477 | 1.4:+36556362 | None:intergenic |
| ACTTTGATTCTGCAGCTTGC+TGG | 0.286403 | 1.4:-36553300 | MS.gene068194:intron |
| GTGGCGTGAGGATGAGTAAA+TGG | 0.299448 | 1.4:+36556574 | None:intergenic |
| CAACCCCAAGAATTTATTAC+AGG | 0.300555 | 1.4:-36553906 | MS.gene068194:intron |
| CGGGAAGAAGGGGAAAATAG+AGG | 0.303301 | 1.4:+36556525 | None:intergenic |
| CTAAACCTGTAATAAATTCT+TGG | 0.309750 | 1.4:+36553901 | None:intergenic |
| CATGGCCTGTTGGACTCTTT+GGG | 0.310381 | 1.4:-36555624 | MS.gene068194:CDS |
| AATTACCTTTCCCAAAATAA+GGG | 0.315621 | 1.4:+36551476 | None:intergenic |
| TCTATAACCGCTACCATTAC+TGG | 0.327775 | 1.4:+36547037 | None:intergenic |
| GAGCCACTTTGTGGTGCATT+TGG | 0.332991 | 1.4:-36547016 | MS.gene068194:CDS |
| TAAACCTGTAATAAATTCTT+GGG | 0.340341 | 1.4:+36553902 | None:intergenic |
| ATGGCGAGGGCGGGAAGAAG+GGG | 0.347970 | 1.4:+36556515 | None:intergenic |
| GTATCCAAAATTGGGCCGTT+TGG | 0.365828 | 1.4:-36555814 | MS.gene068194:CDS |
| GCGTAGAGTGAGGGATTTAA+TGG | 0.367506 | 1.4:+36556482 | None:intergenic |
| TTAAGCCACCTTGACATTAC+CGG | 0.368019 | 1.4:+36546828 | None:intergenic |
| CTGATTTCTGCGGTGACGTT+AGG | 0.368875 | 1.4:-36555880 | MS.gene068194:CDS |
| GAAAATAGAGGGGTTGGACG+AGG | 0.389124 | 1.4:+36556537 | None:intergenic |
| AGTTGGCATACAGCAAAATA+TGG | 0.395674 | 1.4:+36553481 | None:intergenic |
| ACAGTAATATCTAACTTGTT+AGG | 0.396771 | 1.4:-36553249 | MS.gene068194:CDS |
| GGATGGCGAGGGCGGGAAGA+AGG | 0.414231 | 1.4:+36556513 | None:intergenic |
| AATATCATGTATCCAAAATT+GGG | 0.421936 | 1.4:-36555822 | MS.gene068194:CDS |
| AATATTACCCTAGAAAAGTA+TGG | 0.424514 | 1.4:+36553942 | None:intergenic |
| GTCTGAAGGGAGTGGGGCGG+TGG | 0.425306 | 1.4:+36556460 | None:intergenic |
| CGGAGTCTTTCAATTATCTC+TGG | 0.427541 | 1.4:-36547292 | MS.gene068194:CDS |
| GATGGCGAGGGCGGGAAGAA+GGG | 0.436446 | 1.4:+36556514 | None:intergenic |
| AATGCTATTGAATACCAATA+AGG | 0.454180 | 1.4:+36547321 | None:intergenic |
| TCAGAAAACATTACCAGTAA+TGG | 0.457392 | 1.4:-36547050 | MS.gene068194:intron |
| ATCACAAAATTTGTAGCTAG+TGG | 0.459990 | 1.4:-36551561 | MS.gene068194:CDS |
| CAGTTGGATGGTAGTGGTAG+TGG | 0.462050 | 1.4:-36556420 | MS.gene068194:CDS |
| ACTAGCCCAAAGAGTCCAAC+AGG | 0.477856 | 1.4:+36555619 | None:intergenic |
| GGATTAACATGTCCTAGTCT+TGG | 0.479373 | 1.4:-36555859 | MS.gene068194:CDS |
| CTGTAATAAATTCTTGGGGT+TGG | 0.480588 | 1.4:+36553907 | None:intergenic |
| GCTGTAGAAGCATGGCCTGT+TGG | 0.481048 | 1.4:-36555634 | MS.gene068194:CDS |
| GGAGTGAGGATGGCGAGGGC+GGG | 0.485143 | 1.4:+36556506 | None:intergenic |
| GGGAAGAAGGGGAAAATAGA+GGG | 0.485919 | 1.4:+36556526 | None:intergenic |
| AAATTTGTAGCTAGTGGAGT+TGG | 0.486943 | 1.4:-36551555 | MS.gene068194:CDS |
| AGGGGTTGGACGAGGGAATG+AGG | 0.487237 | 1.4:+36556545 | None:intergenic |
| AGCAAATTCCTACCAGGCTA+AGG | 0.489921 | 1.4:+36548585 | None:intergenic |
| TTTCTTGTAGCTATTGGACT+GGG | 0.493824 | 1.4:-36548271 | MS.gene068194:CDS |
| CACTCGGCGGAGGTCATGGC+GGG | 0.494199 | 1.4:-36556606 | None:intergenic |
| GAAGGGGAAAATAGAGGGGT+TGG | 0.496201 | 1.4:+36556531 | None:intergenic |
| ATATCATCCTGCAGGTACCT+TGG | 0.501746 | 1.4:-36548345 | MS.gene068194:intron |
| CCCCTAGCAAAGCTCAAAAT+GGG | 0.502048 | 1.4:+36556363 | None:intergenic |
| TGGGGCGGTGGCGTAGAGTG+AGG | 0.502175 | 1.4:+36556472 | None:intergenic |
| AAGAGTCAGAAGGATTGAGC+TGG | 0.505321 | 1.4:-36556392 | MS.gene068194:CDS |
| CGGAGTGAGGATGGCGAGGG+CGG | 0.505348 | 1.4:+36556505 | None:intergenic |
| TAAGCCACCTTGACATTACC+GGG | 0.509096 | 1.4:+36546829 | None:intergenic |
| AAAATAGAGGGGTTGGACGA+GGG | 0.518366 | 1.4:+36556538 | None:intergenic |
| ACACCACTTGATAATGTAGT+TGG | 0.522256 | 1.4:+36553464 | None:intergenic |
| TGCTGGAGCAAATACTGCAC+TGG | 0.529303 | 1.4:-36553283 | MS.gene068194:CDS |
| GACTTGCTCACTTGTATCCA+AGG | 0.541072 | 1.4:+36548328 | None:intergenic |
| GTGGTGCATTTGGAGAATCT+GGG | 0.542143 | 1.4:-36547006 | MS.gene068194:CDS |
| GGGGCGGTGGCGTAGAGTGA+GGG | 0.542160 | 1.4:+36556473 | None:intergenic |
| ACTCATACTAGTTGCAAGCC+AGG | 0.542506 | 1.4:-36547227 | MS.gene068194:intron |
| TTCAATCAGTTGGATGGTAG+TGG | 0.543346 | 1.4:-36556426 | MS.gene068194:CDS |
| TATTCAATAGCATTGCTGTC+CGG | 0.543451 | 1.4:-36547312 | MS.gene068194:CDS |
| GTGTTGCGAAGCGAAGAAAT+TGG | 0.543607 | 1.4:-36555661 | MS.gene068194:CDS |
| GAATTGAGCACATGGTCTGA+AGG | 0.544454 | 1.4:+36556446 | None:intergenic |
| GCACATGGTCTGAAGGGAGT+GGG | 0.546886 | 1.4:+36556453 | None:intergenic |
| GGAAGAAGGGGAAAATAGAG+GGG | 0.548611 | 1.4:+36556527 | None:intergenic |
| ATTTAATGGCGGAGTGAGGA+TGG | 0.549666 | 1.4:+36556496 | None:intergenic |
| ATGTGCTCAATTCAATCAGT+TGG | 0.553034 | 1.4:-36556436 | MS.gene068194:CDS |
| AGCACATGGTCTGAAGGGAG+TGG | 0.558159 | 1.4:+36556452 | None:intergenic |
| CACATGGTCTGAAGGGAGTG+GGG | 0.559219 | 1.4:+36556454 | None:intergenic |
| ATTAGATGTGTTGCAATACA+AGG | 0.561844 | 1.4:+36546971 | None:intergenic |
| GAACACCTTGTAGATTATTG+TGG | 0.563250 | 1.4:-36546890 | MS.gene068194:intron |
| ATTACCTTTCCCAAAATAAG+GGG | 0.563723 | 1.4:+36551477 | None:intergenic |
| GCGGTTATAGAGCCACTTTG+TGG | 0.565801 | 1.4:-36547025 | MS.gene068194:CDS |
| TATTGCAACACATCTAATCC+AGG | 0.567214 | 1.4:-36546966 | MS.gene068194:intron |
| AGGGATTTAATGGCGGAGTG+AGG | 0.569386 | 1.4:+36556492 | None:intergenic |
| AGTCTTTCAATTATCTCTGG+TGG | 0.578014 | 1.4:-36547289 | MS.gene068194:CDS |
| TGATCCCTGAGAAAAGCTTA+CGG | 0.582266 | 1.4:+36548618 | None:intergenic |
| AATTGAGCACATGGTCTGAA+GGG | 0.582552 | 1.4:+36556447 | None:intergenic |
| AGGGGCAATATCTTACCTCT+AGG | 0.584110 | 1.4:-36556345 | MS.gene068194:intron |
| ATGGCGGAGTGAGGATGGCG+AGG | 0.585893 | 1.4:+36556501 | None:intergenic |
| TCAACAGCGCAACCAAGACT+AGG | 0.588891 | 1.4:+36555847 | None:intergenic |
| ATGGTCTGAAGGGAGTGGGG+CGG | 0.591354 | 1.4:+36556457 | None:intergenic |
| AACATTACCAGTAATGGTAG+CGG | 0.596517 | 1.4:-36547044 | MS.gene068194:CDS |
| TGGCGTGAGGATGAGTAAAT+GGG | 0.597198 | 1.4:+36556575 | None:intergenic |
| TGGCGGAGTGAGGATGGCGA+GGG | 0.599047 | 1.4:+36556502 | None:intergenic |
| GAGGATGAGTAAATGGGCGG+TGG | 0.603068 | 1.4:+36556581 | None:intergenic |
| CAGAGATAATTGAAAGACTC+CGG | 0.603417 | 1.4:+36547293 | None:intergenic |
| AAGTGGTGTTGCACTTACCC+AGG | 0.603604 | 1.4:-36553450 | MS.gene068194:intron |
| TGCAACTAGTATGAGTGCGT+TGG | 0.605826 | 1.4:+36547234 | None:intergenic |
| AGACAATCCCGGTAATGTCA+AGG | 0.608768 | 1.4:-36546836 | MS.gene068194:CDS |
| ATGCGTCGCAAAGACAATCC+CGG | 0.610325 | 1.4:-36546847 | MS.gene068194:CDS |
| GCTCAATTCAATCAGTTGGA+TGG | 0.615812 | 1.4:-36556432 | MS.gene068194:CDS |
| AAACCTGTAATAAATTCTTG+GGG | 0.616241 | 1.4:+36553903 | None:intergenic |
| TCTCCAAATGCACCACAAAG+TGG | 0.621477 | 1.4:+36547013 | None:intergenic |
| AGAGTCAGAAGGATTGAGCT+GGG | 0.621798 | 1.4:-36556391 | MS.gene068194:CDS |
| TTACCTTTCCCAAAATAAGG+GGG | 0.625879 | 1.4:+36551478 | None:intergenic |
| ATTTGTAGCTCTGATTTCTG+CGG | 0.627818 | 1.4:-36555890 | MS.gene068194:intron |
| GGATACAAGTGAGCAAGTCA+AGG | 0.631449 | 1.4:-36548324 | MS.gene068194:CDS |
| TTGGTGCAGCTGTAGAAGCA+TGG | 0.632248 | 1.4:-36555642 | MS.gene068194:CDS |
| AACTGATTGAATTGAGCACA+TGG | 0.632805 | 1.4:+36556438 | None:intergenic |
| AGTGGTAGCAAAGAGTCAGA+AGG | 0.633086 | 1.4:-36556402 | MS.gene068194:CDS |
| ATGCCAACTACATTATCAAG+TGG | 0.643732 | 1.4:-36553467 | MS.gene068194:CDS |
| ATGAGGATGAATGTGGCGTG+AGG | 0.678200 | 1.4:+36556562 | None:intergenic |
| TAGAGTGAGGGATTTAATGG+CGG | 0.692309 | 1.4:+36556485 | None:intergenic |
| CGTGAGGATGAGTAAATGGG+CGG | 0.692761 | 1.4:+36556578 | None:intergenic |
| CGAGGGAATGAGGATGAATG+TGG | 0.697030 | 1.4:+36556555 | None:intergenic |
| CAATCCCGGTAATGTCAAGG+TGG | 0.702461 | 1.4:-36546833 | MS.gene068194:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 36546828 | 36556613 | 36546828 | ID=MS.gene068194 |
| chr1.4 | mRNA | 36546828 | 36556613 | 36546828 | ID=MS.gene068194.t1;Parent=MS.gene068194 |
| chr1.4 | exon | 36556346 | 36556613 | 36556346 | ID=MS.gene068194.t1.exon1;Parent=MS.gene068194.t1 |
| chr1.4 | CDS | 36556346 | 36556613 | 36556346 | ID=cds.MS.gene068194.t1;Parent=MS.gene068194.t1 |
| chr1.4 | exon | 36555797 | 36555904 | 36555797 | ID=MS.gene068194.t1.exon2;Parent=MS.gene068194.t1 |
| chr1.4 | CDS | 36555797 | 36555904 | 36555797 | ID=cds.MS.gene068194.t1;Parent=MS.gene068194.t1 |
| chr1.4 | exon | 36555621 | 36555688 | 36555621 | ID=MS.gene068194.t1.exon3;Parent=MS.gene068194.t1 |
| chr1.4 | CDS | 36555621 | 36555688 | 36555621 | ID=cds.MS.gene068194.t1;Parent=MS.gene068194.t1 |
| chr1.4 | exon | 36553907 | 36553985 | 36553907 | ID=MS.gene068194.t1.exon4;Parent=MS.gene068194.t1 |
| chr1.4 | CDS | 36553907 | 36553985 | 36553907 | ID=cds.MS.gene068194.t1;Parent=MS.gene068194.t1 |
| chr1.4 | exon | 36553451 | 36553509 | 36553451 | ID=MS.gene068194.t1.exon5;Parent=MS.gene068194.t1 |
| chr1.4 | CDS | 36553451 | 36553509 | 36553451 | ID=cds.MS.gene068194.t1;Parent=MS.gene068194.t1 |
| chr1.4 | exon | 36553239 | 36553307 | 36553239 | ID=MS.gene068194.t1.exon6;Parent=MS.gene068194.t1 |
| chr1.4 | CDS | 36553239 | 36553307 | 36553239 | ID=cds.MS.gene068194.t1;Parent=MS.gene068194.t1 |
| chr1.4 | exon | 36551482 | 36551595 | 36551482 | ID=MS.gene068194.t1.exon7;Parent=MS.gene068194.t1 |
| chr1.4 | CDS | 36551482 | 36551595 | 36551482 | ID=cds.MS.gene068194.t1;Parent=MS.gene068194.t1 |
| chr1.4 | exon | 36550486 | 36550507 | 36550486 | ID=MS.gene068194.t1.exon8;Parent=MS.gene068194.t1 |
| chr1.4 | CDS | 36550486 | 36550507 | 36550486 | ID=cds.MS.gene068194.t1;Parent=MS.gene068194.t1 |
| chr1.4 | exon | 36548598 | 36548665 | 36548598 | ID=MS.gene068194.t1.exon9;Parent=MS.gene068194.t1 |
| chr1.4 | CDS | 36548598 | 36548665 | 36548598 | ID=cds.MS.gene068194.t1;Parent=MS.gene068194.t1 |
| chr1.4 | exon | 36548268 | 36548353 | 36548268 | ID=MS.gene068194.t1.exon10;Parent=MS.gene068194.t1 |
| chr1.4 | CDS | 36548268 | 36548353 | 36548268 | ID=cds.MS.gene068194.t1;Parent=MS.gene068194.t1 |
| chr1.4 | exon | 36547228 | 36547357 | 36547228 | ID=MS.gene068194.t1.exon11;Parent=MS.gene068194.t1 |
| chr1.4 | CDS | 36547228 | 36547357 | 36547228 | ID=cds.MS.gene068194.t1;Parent=MS.gene068194.t1 |
| chr1.4 | exon | 36546967 | 36547068 | 36546967 | ID=MS.gene068194.t1.exon12;Parent=MS.gene068194.t1 |
| chr1.4 | CDS | 36546967 | 36547068 | 36546967 | ID=cds.MS.gene068194.t1;Parent=MS.gene068194.t1 |
| chr1.4 | exon | 36546828 | 36546899 | 36546828 | ID=MS.gene068194.t1.exon13;Parent=MS.gene068194.t1 |
| chr1.4 | CDS | 36546828 | 36546899 | 36546828 | ID=cds.MS.gene068194.t1;Parent=MS.gene068194.t1 |
| Gene Sequence |
| Protein sequence |
