AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene31940

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31940.t1 MTR_4g088920 94.852 913 47 0 1 913 1 913 0.0 1794
MS.gene31940.t1 MTR_5g068600 30.673 802 468 22 33 791 43 799 2.80e-85 291
MS.gene31940.t1 MTR_5g068600 31.306 674 385 18 151 789 67 697 5.30e-77 266
MS.gene31940.t1 MTR_1g045670 29.064 203 132 3 414 605 743 944 1.03e-16 85.9
MS.gene31940.t1 MTR_1g100683 33.858 127 82 2 428 553 799 924 5.48e-15 80.1
MS.gene31940.t1 MTR_1g100683 33.858 127 82 2 428 553 799 924 5.48e-15 80.1
MS.gene31940.t1 MTR_7g109470 25.424 295 170 10 403 665 1003 1279 2.94e-14 77.8
MS.gene31940.t1 MTR_6g086270 25.820 244 149 7 413 630 878 1115 4.98e-13 73.9
MS.gene31940.t1 MTR_4g111945 21.908 283 188 7 414 664 649 930 9.62e-13 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31940.t1 AT1G65070 53.812 892 351 11 28 913 40 876 0.0 905
MS.gene31940.t1 AT1G65070 53.776 874 343 11 28 895 40 858 0.0 881
MS.gene31940.t1 AT1G65070 55.311 772 293 8 28 794 40 764 0.0 816
MS.gene31940.t1 AT1G65070 56.962 632 223 7 28 655 40 626 0.0 692
MS.gene31940.t1 AT5G54090 30.322 808 469 24 20 784 34 790 4.59e-82 282
MS.gene31940.t1 AT3G24320 27.723 202 134 3 415 605 498 698 1.26e-16 85.5
MS.gene31940.t1 AT3G24320 27.723 202 134 3 415 605 743 943 1.89e-16 85.1
MS.gene31940.t1 AT4G25540 32.624 141 92 3 414 552 799 938 1.16e-14 79.3
MS.gene31940.t1 AT4G02070 24.167 360 204 12 203 550 897 1199 2.04e-12 72.0
MS.gene31940.t1 AT4G02070 24.167 360 204 12 203 550 900 1202 2.05e-12 72.0
MS.gene31940.t1 AT3G18524 29.861 144 96 4 414 554 648 789 6.79e-12 70.1
MS.gene31940.t1 AT4G17380 28.462 130 92 1 423 552 545 673 1.17e-11 69.3
MS.gene31940.t1 AT4G17380 28.462 130 92 1 423 552 545 673 1.47e-11 68.9
MS.gene31940.t1 AT3G24495 29.730 148 94 4 412 550 826 972 2.10e-11 68.6

Find 217 sgRNAs with CRISPR-Local

Find 388 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATAATTCATTGGACTTTC+TGG 0.056329 4.1:-20914589 None:intergenic
CTCTGGAGCAACATACTTTA+TGG 0.200265 4.1:+20911199 MS.gene31940:CDS
CTCCGCTCTTGCTGCTGTTC+TGG 0.212629 4.1:-20912416 None:intergenic
AAACCTTGCAACCAACTTAT+AGG 0.224407 4.1:+20912285 MS.gene31940:CDS
GCAAAATTGTAATTTCCTAA+TGG 0.255352 4.1:+20910908 MS.gene31940:CDS
CGAAAAGCAACTAAAAGATT+TGG 0.258652 4.1:+20913121 MS.gene31940:CDS
ACATCATATACTCCACAATT+TGG 0.262844 4.1:+20913254 MS.gene31940:CDS
CTTGTTCTCATTGATGAAAT+TGG 0.280062 4.1:+20912098 MS.gene31940:CDS
CCAGAAAGTCCAATGAATTA+TGG 0.282003 4.1:+20914589 MS.gene31940:CDS
GAAGAACACTCGCTGCTTCC+AGG 0.290821 4.1:+20909993 MS.gene31940:CDS
TTGCATAGATTGCAATCTTT+TGG 0.292449 4.1:+20910953 MS.gene31940:CDS
CTAGAATGTGCGTGGGCATC+AGG 0.296994 4.1:+20911126 MS.gene31940:CDS
AGAGTACCTAAACTGAAAAT+TGG 0.301495 4.1:-20911425 None:intergenic
ATTCTCTCCGTTGCTGTTTC+CGG 0.310263 4.1:+20909935 MS.gene31940:CDS
AGCAATGGTAATATTTATTA+TGG 0.311747 4.1:+20914367 MS.gene31940:CDS
GACCTTATCCTTGCAGATAT+TGG 0.312231 4.1:+20911836 MS.gene31940:CDS
CAAAATTGTAATTTCCTAAT+GGG 0.314744 4.1:+20910909 MS.gene31940:CDS
TTGCATCCTCTAACTCTTGT+TGG 0.316694 4.1:-20913067 None:intergenic
TTCAAATCTATTGCTTCTTT+CGG 0.318025 4.1:-20911224 None:intergenic
AGGTCAAACCAAGGAAGTTT+TGG 0.325111 4.1:-20911818 None:intergenic
AACCTTGCAACCAACTTATA+GGG 0.326348 4.1:+20912286 MS.gene31940:CDS
TCATTAGATCAGAACGAAAA+AGG 0.327607 4.1:+20911009 MS.gene31940:CDS
CTTGGCAGGCAGATGCATTC+CGG 0.328681 4.1:-20911789 None:intergenic
AGGTTTGATCGAGAAGCTTT+TGG 0.334460 4.1:-20909850 None:intergenic
AGGGATTGAGGGTTTGTTGA+TGG 0.339868 4.1:-20909645 None:intergenic
TTCTTAGATGTTTGCACCGC+TGG 0.347990 4.1:-20914391 None:intergenic
GATCGACGCTTAGTAATAAA+TGG 0.355822 4.1:-20911104 None:intergenic
GGGATTGAGGGTTTGTTGAT+GGG 0.370731 4.1:-20909644 None:intergenic
GAAAAGCAACTAAAAGATTT+GGG 0.371137 4.1:+20913122 MS.gene31940:CDS
AGCATTCACTTCCACTTCAA+TGG 0.372505 4.1:+20909772 MS.gene31940:CDS
ATCAGAGATAAAATATTTGT+TGG 0.373046 4.1:+20911334 MS.gene31940:CDS
AAGGAGAAGCGAGGGATTGA+GGG 0.374390 4.1:-20909656 None:intergenic
ACGGGCGTTGTTGGCGGCGG+AGG 0.376941 4.1:-20909798 None:intergenic
TCTGAGTTGGGTAATGGAAA+TGG 0.381561 4.1:+20911602 MS.gene31940:CDS
GAGTACGTCCGACGGGTAAA+CGG 0.383430 4.1:-20909817 None:intergenic
ATTACAAAGAGAACTGAATA+TGG 0.386756 4.1:-20914487 None:intergenic
TTAAGCATAGTGCAATCTAT+TGG 0.386809 4.1:+20912341 MS.gene31940:CDS
AACTAGTTCTCCCACTCATC+AGG 0.387558 4.1:+20913433 MS.gene31940:CDS
CAAGGTCTTCTGCCTCCCTT+TGG 0.387704 4.1:-20913001 None:intergenic
GTTCTGAATGCCAGCAGCTC+TGG 0.388227 4.1:+20911182 MS.gene31940:CDS
AACCAACTTATAGGGTTCTC+TGG 0.388468 4.1:+20912294 MS.gene31940:CDS
GTAATACATGGGATGGGCAC+TGG 0.389103 4.1:+20914505 MS.gene31940:CDS
TTGTAATTTCCTAATGGGCT+TGG 0.389277 4.1:+20910914 MS.gene31940:CDS
GAAACAATCTTGGTACAGTA+TGG 0.389406 4.1:+20913344 MS.gene31940:CDS
AATTCTTCTGAGTTGGGTAA+TGG 0.397648 4.1:+20911596 MS.gene31940:CDS
TCCTAATGGGCTTGGAGCGC+AGG 0.398236 4.1:+20910922 MS.gene31940:CDS
GAAGGAGAAGCGAGGGATTG+AGG 0.404110 4.1:-20909657 None:intergenic
AATGCTCTATCAGTCATTAC+AGG 0.405453 4.1:+20912442 MS.gene31940:CDS
GTTCATAATTTCTGCATGAA+TGG 0.405550 4.1:-20912507 None:intergenic
CAAGTCCGTGTGAAGGGATT+GGG 0.412733 4.1:+20913281 MS.gene31940:CDS
GACGGGTAAACGGGCGTTGT+TGG 0.416611 4.1:-20909807 None:intergenic
GTCATCTCAGGACCTAATAC+TGG 0.416951 4.1:+20911713 MS.gene31940:CDS
GTTGACTTCAAAATTAGATC+TGG 0.420665 4.1:+20911677 MS.gene31940:CDS
TATGGCAAAGGAAGCTCAAC+AGG 0.420669 4.1:+20913043 MS.gene31940:CDS
TGCTGATCTAAGTACTTTGA+AGG 0.425952 4.1:+20912217 MS.gene31940:CDS
TCAGTTCTCTTTGTAATACA+TGG 0.427691 4.1:+20914493 MS.gene31940:CDS
ATTTGAACAACATGGAAGTT+AGG 0.428354 4.1:+20911240 MS.gene31940:CDS
ACTAGAGTGGTGGTCATCTC+AGG 0.432380 4.1:+20911701 MS.gene31940:CDS
TAATACATGGGATGGGCACT+GGG 0.432402 4.1:+20914506 MS.gene31940:CDS
GTCTGGAAATTCTTCTGAGT+TGG 0.433211 4.1:+20911589 MS.gene31940:CDS
GTAGCAGAAGCAAGGTTTGA+AGG 0.434423 4.1:-20909675 None:intergenic
ACAGGTCCAACAAGAGTTAG+AGG 0.437103 4.1:+20913061 MS.gene31940:CDS
CTTCGAACGGTGCAAAGCTC+GGG 0.437748 4.1:-20909974 None:intergenic
GCATTCAGAACTATACCTTC+TGG 0.438902 4.1:-20911170 None:intergenic
TCCTGCGCTCCAAGCCCATT+AGG 0.439036 4.1:-20910923 None:intergenic
TCTGGAAATTCTTCTGAGTT+GGG 0.439306 4.1:+20911590 MS.gene31940:CDS
GCCTATGCTCAATGGATGAA+TGG 0.441853 4.1:+20911395 MS.gene31940:CDS
GCAAGTCCGTGTGAAGGGAT+TGG 0.444020 4.1:+20913280 MS.gene31940:CDS
TGAGTGGGAGAACTAGTTGC+AGG 0.444981 4.1:-20913428 None:intergenic
CTCCAATATCTGCAAGGATA+AGG 0.447195 4.1:-20911838 None:intergenic
TGCTGAGAGTTGCTTGCATA+TGG 0.449310 4.1:-20909753 None:intergenic
CCTATGCTCAATGGATGAAT+GGG 0.451608 4.1:+20911396 MS.gene31940:CDS
ACAGTACATCCATAATTCAT+TGG 0.451719 4.1:-20914598 None:intergenic
AGAAAAGTCCAAAACTTCCT+TGG 0.454680 4.1:+20911810 MS.gene31940:CDS
GCATTCACTTCCACTTCAAT+GGG 0.457389 4.1:+20909773 MS.gene31940:CDS
AATCCTGGACTCTTTATTGA+AGG 0.459366 4.1:+20911040 MS.gene31940:CDS
TAGACGTGAAACGATGCTTA+TGG 0.459950 4.1:+20913025 MS.gene31940:CDS
CTTTAATTATTGAATTGAGT+TGG 0.464631 4.1:-20913151 None:intergenic
GTTAAAGGCTCAAGCTGAAA+AGG 0.465641 4.1:+20912478 MS.gene31940:CDS
TTCAAACTCTGAAGCGGCCG+AGG 0.466077 4.1:+20911265 MS.gene31940:CDS
ACCAACTTATAGGGTTCTCT+GGG 0.467907 4.1:+20912295 MS.gene31940:CDS
TTCAATGAAAACGTTGGGCC+TGG 0.468162 4.1:+20911748 MS.gene31940:CDS
GGATTGAGGGTTTGTTGATG+GGG 0.474954 4.1:-20909643 None:intergenic
GCAGGATTCTTTGCACTTGG+TGG 0.477236 4.1:-20913410 None:intergenic
AGTACGTCCGACGGGTAAAC+GGG 0.478043 4.1:-20909816 None:intergenic
CCGCAGATATTGTAAGATAC+TGG 0.478412 4.1:-20912159 None:intergenic
GTATGTTGCTCCAGAGCTGC+TGG 0.478675 4.1:-20911192 None:intergenic
GCCACAGTGGTAGAATTGCC+TGG 0.478854 4.1:+20913314 MS.gene31940:CDS
GGGTAAACGGGCGTTGTTGG+CGG 0.478868 4.1:-20909804 None:intergenic
CAATGACATTGCGGTCGTGC+AGG 0.479424 4.1:+20911475 MS.gene31940:CDS
CTCATTGATGAAATTGGTAG+TGG 0.480474 4.1:+20912104 MS.gene31940:CDS
TAAACGGGCGTTGTTGGCGG+CGG 0.480719 4.1:-20909801 None:intergenic
AGAGGATGCAAAATCTCAAA+TGG 0.483805 4.1:+20913079 MS.gene31940:CDS
ATCTAAGTACTTTGAAGGAA+AGG 0.486923 4.1:+20912222 MS.gene31940:CDS
TCTAAGTACTTTGAAGGAAA+GGG 0.490100 4.1:+20912223 MS.gene31940:CDS
GATAATGTCACACTAAGGTC+TGG 0.494415 4.1:+20911572 MS.gene31940:CDS
ACTGCTTCAATGAAAACGTT+GGG 0.494465 4.1:+20911743 MS.gene31940:CDS
CAAGAGCTGCCTATGCTCAA+TGG 0.496220 4.1:+20911387 MS.gene31940:CDS
TCTTCGAACGGTGCAAAGCT+CGG 0.496479 4.1:-20909975 None:intergenic
CGCTGATTGCCATCTCAAGA+TGG 0.497377 4.1:-20914456 None:intergenic
TTCAGTTTAGGTACTCTTGG+AGG 0.498097 4.1:+20911431 MS.gene31940:CDS
GTTGCAGGATTCTTTGCACT+TGG 0.499764 4.1:-20913413 None:intergenic
GATGGGGATGAAGAGGTTGC+AGG 0.501851 4.1:-20909627 None:intergenic
CTATTGTAGAAACCACTGAA+TGG 0.501864 4.1:+20914313 MS.gene31940:intron
GTTTGATAGTTTGAAACACT+TGG 0.502558 4.1:+20910021 MS.gene31940:CDS
CGATTTAACAGTAAATATTG+AGG 0.507073 4.1:+20911502 MS.gene31940:CDS
ACCTGCTTTCCCTGATGAGT+GGG 0.510949 4.1:-20913443 None:intergenic
TCTCTTTGTAATACATGGGA+TGG 0.512107 4.1:+20914498 MS.gene31940:CDS
TATGCGGCATCCATTACTCC+TGG 0.512692 4.1:+20911526 MS.gene31940:CDS
ACCACTGAATGGAAAATCCC+GGG 0.517125 4.1:+20914324 MS.gene31940:CDS
ATGCGATCAGCGCCACTGAT+GGG 0.523837 4.1:-20913230 None:intergenic
AACCCTATAAGTTGGTTGCA+AGG 0.524314 4.1:-20912288 None:intergenic
AGGGTTCTCTGGGGATGTAT+CGG 0.524805 4.1:+20912305 MS.gene31940:CDS
GCATCGTTTCACGTCTATCA+AGG 0.526470 4.1:-20913019 None:intergenic
CCACAGTGGTAGAATTGCCT+GGG 0.526487 4.1:+20913315 MS.gene31940:CDS
CAAACTATCAAACAATTCCC+TGG 0.528874 4.1:-20910011 None:intergenic
TCCCACTCATCAGGGAAAGC+AGG 0.529174 4.1:+20913442 MS.gene31940:CDS
GTTCTGATCTAATGATCTCC+AGG 0.531958 4.1:-20911001 None:intergenic
ACTCAAAATTGCTCTTTCCT+CGG 0.533024 4.1:-20911282 None:intergenic
AACCACTGAATGGAAAATCC+CGG 0.535658 4.1:+20914323 MS.gene31940:CDS
CTTCCTTCAATAAAGAGTCC+AGG 0.535939 4.1:-20911043 None:intergenic
CAGTTCTCTTTGTAATACAT+GGG 0.538091 4.1:+20914494 MS.gene31940:CDS
TGGGCATCAGGGCTTCGTAT+AGG 0.539792 4.1:+20911138 MS.gene31940:CDS
GTTTGTTGATGGGGATGAAG+AGG 0.545453 4.1:-20909634 None:intergenic
TAATTGACCATGCACAAAAG+TGG 0.545555 4.1:+20912378 MS.gene31940:CDS
GGATTGGACTGAGTTGGACT+CGG 0.547239 4.1:-20909702 None:intergenic
GGAGAGCAAGTCCGTGTGAA+GGG 0.549755 4.1:+20913275 MS.gene31940:CDS
CCCCAGAGAACCCTATAAGT+TGG 0.550494 4.1:-20912296 None:intergenic
AAGGTTTGAAGGAGAAGCGA+GGG 0.550811 4.1:-20909664 None:intergenic
TTGTTGTTGAGGAATGAGTC+TGG 0.550825 4.1:-20909879 None:intergenic
CGGACTTGCTCTCCAAATTG+TGG 0.554429 4.1:-20913266 None:intergenic
TGGGGATGATGAAACAATCT+TGG 0.554483 4.1:+20913334 MS.gene31940:CDS
GTTCATCTCTAAGTTACCCC+GGG 0.556248 4.1:-20914341 None:intergenic
TCTGCGGGAACATGTTAACT+TGG 0.556527 4.1:+20912175 MS.gene31940:CDS
GTCTGTTGGAGTACGTCCGA+CGG 0.557543 4.1:-20909825 None:intergenic
AGAGACGACTCCAGGAGTAA+TGG 0.558135 4.1:-20911536 None:intergenic
AAGAACACTCGCTGCTTCCA+GGG 0.558472 4.1:+20909994 MS.gene31940:CDS
AACCAGAACAGCAGCAAGAG+CGG 0.560885 4.1:+20912414 MS.gene31940:CDS
AGGTTGCAGGTGAGTTGCAT+CGG 0.562147 4.1:-20909614 None:intergenic
GATTTAACAGTAAATATTGA+GGG 0.563255 4.1:+20911503 MS.gene31940:CDS
TATAGGTATTTGCTTCCAGA+AGG 0.564358 4.1:+20911155 MS.gene31940:CDS
TGCAGATATTGGAGATCACC+AGG 0.564613 4.1:+20911847 MS.gene31940:CDS
TCTGTTGGAGTACGTCCGAC+GGG 0.568179 4.1:-20909824 None:intergenic
TGATAGAGCAAGTGAAGACC+TGG 0.568238 4.1:+20910983 MS.gene31940:CDS
CTCTTTGTAATACATGGGAT+GGG 0.569356 4.1:+20914499 MS.gene31940:CDS
AGGTTGCAATTCTGTTGAAG+AGG 0.570911 4.1:+20911451 MS.gene31940:CDS
GCATCACTTATGTCAAAAGC+CGG 0.571118 4.1:+20911770 MS.gene31940:CDS
AACTGATCCTTCAGAAGGTG+TGG 0.571658 4.1:+20912127 MS.gene31940:CDS
CAGTATCTTACAATATCTGC+GGG 0.572845 4.1:+20912160 MS.gene31940:CDS
ATAGCCTCAAAACTCTCGAA+TGG 0.578502 4.1:+20909726 MS.gene31940:CDS
AGGAATGAGTCTGGCAGCGG+AGG 0.579503 4.1:-20909870 None:intergenic
TTCCTCCCAATCCCTTCACA+CGG 0.581458 4.1:-20913286 None:intergenic
TTAGAGATGAACAGCAGCAA+TGG 0.583200 4.1:+20914352 MS.gene31940:CDS
AAGATTGTTTCATCATCCCC+AGG 0.584283 4.1:-20913332 None:intergenic
AACTGCTTCAATGAAAACGT+TGG 0.585712 4.1:+20911742 MS.gene31940:CDS
TGGAGAGCAAGTCCGTGTGA+AGG 0.586036 4.1:+20913274 MS.gene31940:CDS
TGAAACGATGCTTATGGCAA+AGG 0.587621 4.1:+20913031 MS.gene31940:CDS
TTTGTTGGATAAAATTCTTG+AGG 0.589996 4.1:+20911349 MS.gene31940:CDS
TGTTCATCTCTAAGTTACCC+CGG 0.590270 4.1:-20914342 None:intergenic
GCTATCGGATTGGACTGAGT+TGG 0.590319 4.1:-20909708 None:intergenic
ACTAGTTCTCCCACTCATCA+GGG 0.590763 4.1:+20913434 MS.gene31940:CDS
TTGAGGAATGAGTCTGGCAG+CGG 0.591996 4.1:-20909873 None:intergenic
TTTCAGATAATGTCACACTA+AGG 0.593354 4.1:+20911567 MS.gene31940:CDS
TACCTGCTTTCCCTGATGAG+TGG 0.594282 4.1:-20913444 None:intergenic
TAGAATGTGCGTGGGCATCA+GGG 0.594705 4.1:+20911127 MS.gene31940:CDS
GGCGGAGGAGCCCATTGAAG+TGG 0.595273 4.1:-20909783 None:intergenic
AATGCGATCAGCGCCACTGA+TGG 0.596091 4.1:-20913231 None:intergenic
GCGTCGATCTAGAATGTGCG+TGG 0.598379 4.1:+20911118 MS.gene31940:CDS
AATTGACCATGCACAAAAGT+GGG 0.600519 4.1:+20912379 MS.gene31940:CDS
TAGGCTTTCAAACTCTGAAG+CGG 0.601365 4.1:+20911259 MS.gene31940:CDS
GCTGTTGGTTCTCCCATCAG+TGG 0.602482 4.1:+20913218 MS.gene31940:CDS
ATCTCAGGACCTAATACTGG+AGG 0.603222 4.1:+20911716 MS.gene31940:CDS
GAAAGAGCCACACCTTCTGA+AGG 0.603440 4.1:-20912134 None:intergenic
AGCTGCGATCCATCTTGAGA+TGG 0.610710 4.1:+20914447 MS.gene31940:CDS
CTGTATCTAATCATTCACAC+AGG 0.610846 4.1:+20910047 MS.gene31940:CDS
GGGAATAGTCAACAATCTAC+CGG 0.610891 4.1:-20909954 None:intergenic
AGCAATAGATTTGAACAACA+TGG 0.612310 4.1:+20911232 MS.gene31940:CDS
GTCCGTGTGAAGGGATTGGG+AGG 0.612668 4.1:+20913284 MS.gene31940:CDS
CCAGTATCTTACAATATCTG+CGG 0.612724 4.1:+20912159 MS.gene31940:CDS
TCGGTTGAGTAGCAGAAGCA+AGG 0.613416 4.1:-20909683 None:intergenic
AAAGCTCATACTCCTGCTGT+TGG 0.614300 4.1:+20913203 MS.gene31940:CDS
GGATCTACGAGGTATGCGAC+TGG 0.616506 4.1:+20914420 MS.gene31940:CDS
GCTTCTAAAAGCGCGTCACA+AGG 0.619119 4.1:+20911632 MS.gene31940:CDS
AATTAGATCTGGAACTAGAG+TGG 0.621351 4.1:+20911688 MS.gene31940:CDS
AACAACGCCCGTTTACCCGT+CGG 0.621448 4.1:+20909809 MS.gene31940:CDS
CTGATGGGAGAACCAACAGC+AGG 0.622975 4.1:-20913215 None:intergenic
CCCATTCATCCATTGAGCAT+AGG 0.623957 4.1:-20911396 None:intergenic
CAGTAAATATTGAGGGTATG+CGG 0.626418 4.1:+20911510 MS.gene31940:CDS
AGTGGAACTGATCCTTCAGA+AGG 0.631076 4.1:+20912122 MS.gene31940:CDS
CAAGGTTTGAAGGAGAAGCG+AGG 0.631968 4.1:-20909665 None:intergenic
GAAAAGTCGAGTTGTTGTTG+AGG 0.632731 4.1:-20909890 None:intergenic
CAATCTACCGGAAACAGCAA+CGG 0.634527 4.1:-20909942 None:intergenic
AGCAGCGAGTGTTCTTCGAA+CGG 0.642225 4.1:-20909987 None:intergenic
GGTGATCTCCAATATCTGCA+AGG 0.644964 4.1:-20911844 None:intergenic
TTCCAGTGAAAATTCCATTG+CGG 0.649211 4.1:-20912264 None:intergenic
CGTCGATCTAGAATGTGCGT+GGG 0.653354 4.1:+20911119 MS.gene31940:CDS
TGACCATGCACAAAAGTGGG+TGG 0.654188 4.1:+20912382 MS.gene31940:CDS
GGGTAATGGAAATGGAACAA+TGG 0.655085 4.1:+20911610 MS.gene31940:CDS
GAACAGCAGCAAGAGCGGAG+AGG 0.655853 4.1:+20912419 MS.gene31940:CDS
GCAAACATCTAAGAATACTG+TGG 0.660918 4.1:+20914399 MS.gene31940:CDS
GCTCTATCAGTCATTACAGG+AGG 0.665919 4.1:+20912445 MS.gene31940:CDS
TCTCAGGACCTAATACTGGA+GGG 0.667789 4.1:+20911717 MS.gene31940:CDS
TAGATCTGGAACTAGAGTGG+TGG 0.673809 4.1:+20911691 MS.gene31940:CDS
TAATATTTATTATGGTCCAG+CGG 0.675272 4.1:+20914375 MS.gene31940:CDS
ACTTAGATCAGCATAATGAG+TGG 0.681388 4.1:-20912207 None:intergenic
CTATGCTCAATGGATGAATG+GGG 0.683732 4.1:+20911397 MS.gene31940:CDS
CACAGTGGTAGAATTGCCTG+GGG 0.691114 4.1:+20913316 MS.gene31940:CDS
AATTATGAACGTGTACTCTG+AGG 0.698166 4.1:+20912520 MS.gene31940:CDS
AATACATGGGATGGGCACTG+GGG 0.701367 4.1:+20914507 MS.gene31940:CDS
TGAAGAGGACAATGACATTG+CGG 0.707528 4.1:+20911466 MS.gene31940:CDS
CCCAGGCAATTCTACCACTG+TGG 0.714085 4.1:-20913315 None:intergenic
GGGAGGAAAATTAGCCACAG+TGG 0.714859 4.1:+20913301 MS.gene31940:CDS
GCAAGGATAAGGTCAAACCA+AGG 0.720894 4.1:-20911827 None:intergenic
CCACTGAATGGAAAATCCCG+GGG 0.744139 4.1:+20914325 MS.gene31940:CDS
AAGAATACTGTGGATCTACG+AGG 0.748281 4.1:+20914409 MS.gene31940:CDS
GGTTCAAAATGAGTGACACG+AGG 0.753470 4.1:-20914568 None:intergenic
CCAACTTATAGGGTTCTCTG+GGG 0.797932 4.1:+20912296 MS.gene31940:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATCATG+TGG + chr4.1:20911949-20911968 MS.gene31940:intron 10.0%
!! TTCATATAAATAAAAGTTAT+TGG + chr4.1:20913742-20913761 MS.gene31940:intron 10.0%
!!! AATTTAGAATTGATATATTT+TGG + chr4.1:20913842-20913861 MS.gene31940:intron 10.0%
!! AAATACCTTTCAATAAAATT+TGG - chr4.1:20913778-20913797 None:intergenic 15.0%
!! AATTTCAGATAAACTTTAAA+AGG - chr4.1:20912638-20912657 None:intergenic 15.0%
!! ATAATGATTATCATACTATA+TGG - chr4.1:20912611-20912630 None:intergenic 15.0%
!!! AAGGTATTTTATATTTAATC+TGG + chr4.1:20913789-20913808 MS.gene31940:intron 15.0%
!!! AATTTTGTCTAAATCAAATT+AGG - chr4.1:20914176-20914195 None:intergenic 15.0%
!!! ATTATCTAAAATATTCTTCA+TGG + chr4.1:20913711-20913730 MS.gene31940:intron 15.0%
!!! ATTTCAGATAAACTTTAAAA+GGG - chr4.1:20912637-20912656 None:intergenic 15.0%
!!! TTACTATTTTAGTAAGAATT+GGG + chr4.1:20913959-20913978 MS.gene31940:intron 15.0%
!! AAATAAAAGGAAACAGTTTA+TGG + chr4.1:20910267-20910286 MS.gene31940:intron 20.0%
!! AATAAAAGGAAACAGTTTAT+GGG + chr4.1:20910268-20910287 MS.gene31940:intron 20.0%
!! AGCAATGGTAATATTTATTA+TGG + chr4.1:20914367-20914386 MS.gene31940:CDS 20.0%
!! ATATTTAAATTAACAGCTCT+TGG - chr4.1:20912788-20912807 None:intergenic 20.0%
!! ATCAGAGATAAAATATTTGT+TGG + chr4.1:20911334-20911353 MS.gene31940:CDS 20.0%
!! ATTGTTCTATCATGTAATTT+GGG + chr4.1:20914004-20914023 MS.gene31940:intron 20.0%
!! CAAAATTGTAATTTCCTAAT+GGG + chr4.1:20910909-20910928 MS.gene31940:CDS 20.0%
!! CTTTAATTATTGAATTGAGT+TGG - chr4.1:20913154-20913173 None:intergenic 20.0%
!! GATTTAACAGTAAATATTGA+GGG + chr4.1:20911503-20911522 MS.gene31940:CDS 20.0%
!! TTGCAAAATAACTTTCTTAA+TGG - chr4.1:20913560-20913579 None:intergenic 20.0%
!!! ATTTTTGTGAACTTTTACTT+TGG - chr4.1:20910834-20910853 None:intergenic 20.0%
!!! CATTTTTTCTTTTGAACTAA+TGG + chr4.1:20913812-20913831 MS.gene31940:intron 20.0%
!!! GAAATCCAAATTTTATTGAA+AGG + chr4.1:20913770-20913789 MS.gene31940:intron 20.0%
!!! GTTACTATTTTAGTAAGAAT+TGG + chr4.1:20913958-20913977 MS.gene31940:intron 20.0%
!!! TACTATTTTAGTAAGAATTG+GGG + chr4.1:20913960-20913979 MS.gene31940:intron 20.0%
!!! TTAAGAAGCCAATTTTAAAA+AGG - chr4.1:20914153-20914172 None:intergenic 20.0%
!!! TTTTACTTTGGATTTGTAAA+AGG - chr4.1:20910822-20910841 None:intergenic 20.0%
! AAAAAAGTTCAGATATTACC+TGG - chr4.1:20911868-20911887 None:intergenic 25.0%
! AAATAGTAACAAATACTCTC+CGG - chr4.1:20913948-20913967 None:intergenic 25.0%
! AATTACATGATAGAACAATG+AGG - chr4.1:20914003-20914022 None:intergenic 25.0%
! ATCCAAAAAACTCTATGTTT+GGG - chr4.1:20913871-20913890 None:intergenic 25.0%
! ATTAATAGATATCCAATCCT+CGG + chr4.1:20912756-20912775 MS.gene31940:intron 25.0%
! ATTACAAAGAGAACTGAATA+TGG - chr4.1:20914490-20914509 None:intergenic 25.0%
! ATTCAATGTGCCTATATTAT+AGG - chr4.1:20914103-20914122 None:intergenic 25.0%
! CAATTTCCAAATATGATGTT+AGG - chr4.1:20914066-20914085 None:intergenic 25.0%
! CATTGTTCTATCATGTAATT+TGG + chr4.1:20914003-20914022 MS.gene31940:intron 25.0%
! CGATTTAACAGTAAATATTG+AGG + chr4.1:20911502-20911521 MS.gene31940:CDS 25.0%
! CTAACATCATATTTGGAAAT+TGG + chr4.1:20914064-20914083 MS.gene31940:intron 25.0%
! GAAAAGCAACTAAAAGATTT+GGG + chr4.1:20913122-20913141 MS.gene31940:CDS 25.0%
! GCAAAATTGTAATTTCCTAA+TGG + chr4.1:20910908-20910927 MS.gene31940:CDS 25.0%
! TAATATTTATTATGGTCCAG+CGG + chr4.1:20914375-20914394 MS.gene31940:CDS 25.0%
! TATCCAAAAAACTCTATGTT+TGG - chr4.1:20913872-20913891 None:intergenic 25.0%
! TGGTATTTATTACAGAAAAC+AGG - chr4.1:20914039-20914058 None:intergenic 25.0%
! TTAATATAGTTAACCTGTCA+AGG + chr4.1:20913510-20913529 MS.gene31940:intron 25.0%
! TTATTATAGTTTCTTCTCCT+TGG + chr4.1:20912584-20912603 MS.gene31940:intron 25.0%
! TTCAAATCTATTGCTTCTTT+CGG - chr4.1:20911227-20911246 None:intergenic 25.0%
! TTCAGATCATCCTATAATAT+AGG + chr4.1:20914090-20914109 MS.gene31940:intron 25.0%
! TTTCAGACATTTCTAATTGA+TGG + chr4.1:20910382-20910401 MS.gene31940:intron 25.0%
! TTTGTTGGATAAAATTCTTG+AGG + chr4.1:20911349-20911368 MS.gene31940:CDS 25.0%
!! AAAATCTCTCAACTTTTAGT+GGG + chr4.1:20912027-20912046 MS.gene31940:CDS 25.0%
!! AATTTTGCAGTATTTCAAGA+AGG - chr4.1:20910896-20910915 None:intergenic 25.0%
!! ATCAACGTTTTTGATGTTTA+TGG + chr4.1:20910570-20910589 MS.gene31940:intron 25.0%
!! ATTTTGCAGTATTTCAAGAA+GGG - chr4.1:20910895-20910914 None:intergenic 25.0%
!! GTATTTTTCTTGACAAAGTT+CGG + chr4.1:20910701-20910720 MS.gene31940:intron 25.0%
!! TAACGGCATTATGAAAATTT+TGG - chr4.1:20912827-20912846 None:intergenic 25.0%
!! TCAACGTTTTTGATGTTTAT+GGG + chr4.1:20910571-20910590 MS.gene31940:intron 25.0%
!! TCAATAGTTTAAGACATGTT+TGG + chr4.1:20910097-20910116 MS.gene31940:intron 25.0%
!! TGATGCAATTGTTTTCAATT+AGG + chr4.1:20910862-20910881 MS.gene31940:intron 25.0%
!! TTTTTGGATATATCCAATAG+CGG + chr4.1:20913882-20913901 MS.gene31940:intron 25.0%
!!! AAGTATCGTCTCAAATTTTT+CGG + chr4.1:20911063-20911082 MS.gene31940:CDS 25.0%
!!! ATCTGTCTCCTTTTTAAAAT+TGG + chr4.1:20914142-20914161 MS.gene31940:intron 25.0%
AAAAAGGAACATAGAAATCC+TGG + chr4.1:20911025-20911044 MS.gene31940:CDS 30.0%
ACAGTACATCCATAATTCAT+TGG - chr4.1:20914601-20914620 None:intergenic 30.0%
ACATCATATACTCCACAATT+TGG + chr4.1:20913254-20913273 MS.gene31940:CDS 30.0%
ACTATTACTTAGCGTATGTT+TGG - chr4.1:20910438-20910457 None:intergenic 30.0%
ACTTATTTGAGCTAATCTAC+CGG - chr4.1:20910411-20910430 None:intergenic 30.0%
AGAAATTCTCTAAGCAATCA+AGG - chr4.1:20910502-20910521 None:intergenic 30.0%
AGCAATAGATTTGAACAACA+TGG + chr4.1:20911232-20911251 MS.gene31940:CDS 30.0%
AGTAATCTTATCTAGTGAGT+TGG + chr4.1:20913582-20913601 MS.gene31940:intron 30.0%
ATTTGAACAACATGGAAGTT+AGG + chr4.1:20911240-20911259 MS.gene31940:CDS 30.0%
CAGTTCTCTTTGTAATACAT+GGG + chr4.1:20914494-20914513 MS.gene31940:CDS 30.0%
CATTACAGGAGGAAAAAAAT+CGG + chr4.1:20912456-20912475 MS.gene31940:CDS 30.0%
CGAAAAGCAACTAAAAGATT+TGG + chr4.1:20913121-20913140 MS.gene31940:CDS 30.0%
CTTGTTCTCATTGATGAAAT+TGG + chr4.1:20912098-20912117 MS.gene31940:CDS 30.0%
GATCTTTGCAAAAGAAGAAA+AGG - chr4.1:20912982-20913001 None:intergenic 30.0%
GGATTGGATATCTATTAATG+AGG - chr4.1:20912755-20912774 None:intergenic 30.0%
GTAATCTTATCTAGTGAGTT+GGG + chr4.1:20913583-20913602 MS.gene31940:intron 30.0%
GTTCATAATTTCTGCATGAA+TGG - chr4.1:20912510-20912529 None:intergenic 30.0%
TCAGTTCTCTTTGTAATACA+TGG + chr4.1:20914493-20914512 MS.gene31940:CDS 30.0%
TCATTAGATCAGAACGAAAA+AGG + chr4.1:20911009-20911028 MS.gene31940:CDS 30.0%
TCCAAAAAACTCTATGTTTG+GGG - chr4.1:20913870-20913889 None:intergenic 30.0%
TTAAGCATAGTGCAATCTAT+TGG + chr4.1:20912341-20912360 MS.gene31940:CDS 30.0%
TTAATAGATATCCAATCCTC+GGG + chr4.1:20912757-20912776 MS.gene31940:intron 30.0%
TTATCATACTATATGGACCA+AGG - chr4.1:20912604-20912623 None:intergenic 30.0%
TTGCTTAGAGAATTTCTGTA+TGG + chr4.1:20910505-20910524 MS.gene31940:intron 30.0%
TTTCAGATAATGTCACACTA+AGG + chr4.1:20911567-20911586 MS.gene31940:CDS 30.0%
! AAGTTGAGAGATTTTGTTCA+AGG - chr4.1:20912022-20912041 None:intergenic 30.0%
! AGAGTACCTAAACTGAAAAT+TGG - chr4.1:20911428-20911447 None:intergenic 30.0%
! AGTATCGTCTCAAATTTTTC+GGG + chr4.1:20911064-20911083 MS.gene31940:CDS 30.0%
! AGTTGAGAGATTTTGTTCAA+GGG - chr4.1:20912021-20912040 None:intergenic 30.0%
! ATCTAAGTACTTTGAAGGAA+AGG + chr4.1:20912222-20912241 MS.gene31940:CDS 30.0%
! ATGAAAATTTTGGATGGAAG+AGG - chr4.1:20912817-20912836 None:intergenic 30.0%
! ATTTTCAGTTTAGGTACTCT+TGG + chr4.1:20911428-20911447 MS.gene31940:CDS 30.0%
! CAAAATCTCTCAACTTTTAG+TGG + chr4.1:20912026-20912045 MS.gene31940:CDS 30.0%
! GGCATTATGAAAATTTTGGA+TGG - chr4.1:20912823-20912842 None:intergenic 30.0%
! GTATGTCCAATTTTCAGTTT+AGG + chr4.1:20911419-20911438 MS.gene31940:CDS 30.0%
! GTTGACTTCAAAATTAGATC+TGG + chr4.1:20911677-20911696 MS.gene31940:CDS 30.0%
! GTTTGATAGTTTGAAACACT+TGG + chr4.1:20910021-20910040 MS.gene31940:CDS 30.0%
! TCTAAGTACTTTGAAGGAAA+GGG + chr4.1:20912223-20912242 MS.gene31940:CDS 30.0%
! TTCTTTTGCAAAGATCCAAA+GGG + chr4.1:20912986-20913005 MS.gene31940:intron 30.0%
! TTGCATAGATTGCAATCTTT+TGG + chr4.1:20910953-20910972 MS.gene31940:CDS 30.0%
! TTTCATAATGCCGTTATTTC+TGG + chr4.1:20912831-20912850 MS.gene31940:intron 30.0%
! TTTTGCAGTATTTCAAGAAG+GGG - chr4.1:20910894-20910913 None:intergenic 30.0%
!! TTCATAATGCCGTTATTTCT+GGG + chr4.1:20912832-20912851 MS.gene31940:intron 30.0%
!!! ACACTCTTTTAAGACCTTAT+TGG - chr4.1:20910755-20910774 None:intergenic 30.0%
!!! CACTCTTTTAAGACCTTATT+GGG - chr4.1:20910754-20910773 None:intergenic 30.0%
!!! GATCTAATTTTGAAGTCAAC+TGG - chr4.1:20911677-20911696 None:intergenic 30.0%
AAACCTTGCAACCAACTTAT+AGG + chr4.1:20912285-20912304 MS.gene31940:CDS 35.0%
AACCTTGCAACCAACTTATA+GGG + chr4.1:20912286-20912305 MS.gene31940:CDS 35.0%
AACTGCTTCAATGAAAACGT+TGG + chr4.1:20911742-20911761 MS.gene31940:CDS 35.0%
AATCCTGGACTCTTTATTGA+AGG + chr4.1:20911040-20911059 MS.gene31940:CDS 35.0%
AATGCTCTATCAGTCATTAC+AGG + chr4.1:20912442-20912461 MS.gene31940:CDS 35.0%
AATTATGAACGTGTACTCTG+AGG + chr4.1:20912520-20912539 MS.gene31940:CDS 35.0%
AATTGACCATGCACAAAAGT+GGG + chr4.1:20912379-20912398 MS.gene31940:CDS 35.0%
ACCAGAAAATCAAAGTGTGA+TGG + chr4.1:20912691-20912710 MS.gene31940:intron 35.0%
ACTCAAAATTGCTCTTTCCT+CGG - chr4.1:20911285-20911304 None:intergenic 35.0%
ACTGCTTCAATGAAAACGTT+GGG + chr4.1:20911743-20911762 MS.gene31940:CDS 35.0%
ACTTAGATCAGCATAATGAG+TGG - chr4.1:20912210-20912229 None:intergenic 35.0%
AGAAAAGTCCAAAACTTCCT+TGG + chr4.1:20911810-20911829 MS.gene31940:CDS 35.0%
AGAAGAAAAGGAAAAGAGTG+AGG - chr4.1:20912970-20912989 None:intergenic 35.0%
AGAGGATGCAAAATCTCAAA+TGG + chr4.1:20913079-20913098 MS.gene31940:CDS 35.0%
CAAACTATCAAACAATTCCC+TGG - chr4.1:20910014-20910033 None:intergenic 35.0%
CAAATATGATGTTAGGAAGC+TGG - chr4.1:20914059-20914078 None:intergenic 35.0%
CAGCTTCCTAACATCATATT+TGG + chr4.1:20914057-20914076 MS.gene31940:intron 35.0%
CAGTATCTTACAATATCTGC+GGG + chr4.1:20912160-20912179 MS.gene31940:CDS 35.0%
CATAATGTCATGTCCCAATA+AGG + chr4.1:20910738-20910757 MS.gene31940:intron 35.0%
CCAGAAAGTCCAATGAATTA+TGG + chr4.1:20914589-20914608 MS.gene31940:CDS 35.0%
CCAGTATCTTACAATATCTG+CGG + chr4.1:20912159-20912178 MS.gene31940:CDS 35.0%
CCATAATTCATTGGACTTTC+TGG - chr4.1:20914592-20914611 None:intergenic 35.0%
CTATTGTAGAAACCACTGAA+TGG + chr4.1:20914313-20914332 MS.gene31940:intron 35.0%
CTCATTGATGAAATTGGTAG+TGG + chr4.1:20912104-20912123 MS.gene31940:CDS 35.0%
CTCTTTGTAATACATGGGAT+GGG + chr4.1:20914499-20914518 MS.gene31940:CDS 35.0%
CTGTATCTAATCATTCACAC+AGG + chr4.1:20910047-20910066 MS.gene31940:CDS 35.0%
GAAACAATCTTGGTACAGTA+TGG + chr4.1:20913344-20913363 MS.gene31940:CDS 35.0%
GAAGAAAAGGAAAAGAGTGA+GGG - chr4.1:20912969-20912988 None:intergenic 35.0%
GAGTATGTAAATAGCTAGAG+GGG + chr4.1:20913908-20913927 MS.gene31940:intron 35.0%
GATCGACGCTTAGTAATAAA+TGG - chr4.1:20911107-20911126 None:intergenic 35.0%
GCAAACATCTAAGAATACTG+TGG + chr4.1:20914399-20914418 MS.gene31940:CDS 35.0%
GGAGGAAAAAAATCGGTTAA+AGG + chr4.1:20912463-20912482 MS.gene31940:CDS 35.0%
GGAGTATGTAAATAGCTAGA+GGG + chr4.1:20913907-20913926 MS.gene31940:intron 35.0%
GGATATCTATTAATGAGGCA+CGG - chr4.1:20912750-20912769 None:intergenic 35.0%
TAATAGATATCCAATCCTCG+GGG + chr4.1:20912758-20912777 MS.gene31940:intron 35.0%
TAATTGACCATGCACAAAAG+TGG + chr4.1:20912378-20912397 MS.gene31940:CDS 35.0%
TATAGGTATTTGCTTCCAGA+AGG + chr4.1:20911155-20911174 MS.gene31940:CDS 35.0%
TCTCTTTGTAATACATGGGA+TGG + chr4.1:20914498-20914517 MS.gene31940:CDS 35.0%
TCTGGAAATTCTTCTGAGTT+GGG + chr4.1:20911590-20911609 MS.gene31940:CDS 35.0%
TGCTGATCTAAGTACTTTGA+AGG + chr4.1:20912217-20912236 MS.gene31940:CDS 35.0%
TTCCAGTGAAAATTCCATTG+CGG - chr4.1:20912267-20912286 None:intergenic 35.0%
TTTATTTCCATCATCTCTCG+AGG - chr4.1:20910254-20910273 None:intergenic 35.0%
! AATTAGATCTGGAACTAGAG+TGG + chr4.1:20911688-20911707 MS.gene31940:CDS 35.0%
! AATTCTTCTGAGTTGGGTAA+TGG + chr4.1:20911596-20911615 MS.gene31940:CDS 35.0%
! ACCATTTTCCCCAGAAATAA+CGG - chr4.1:20912844-20912863 None:intergenic 35.0%
! AGCAGCTTCTTTTATGCATT+TGG + chr4.1:20910668-20910687 MS.gene31940:intron 35.0%
! AGTATGAGCTTTTACAATGG+AGG - chr4.1:20913195-20913214 None:intergenic 35.0%
! CAGTAAATATTGAGGGTATG+CGG + chr4.1:20911510-20911529 MS.gene31940:CDS 35.0%
! CATTTCTAATTGATGGCTAC+CGG + chr4.1:20910389-20910408 MS.gene31940:intron 35.0%
! CTAATTGCACTTGTGCTTTT+GGG + chr4.1:20910785-20910804 MS.gene31940:intron 35.0%
! CTTCTTTTGCAAAGATCCAA+AGG + chr4.1:20912985-20913004 MS.gene31940:intron 35.0%
! GAAAGTGATGGAAACTGATT+GGG - chr4.1:20910329-20910348 None:intergenic 35.0%
! GCAGCTTCTTTTATGCATTT+GGG + chr4.1:20910669-20910688 MS.gene31940:intron 35.0%
! TCTAATTGCACTTGTGCTTT+TGG + chr4.1:20910784-20910803 MS.gene31940:intron 35.0%
! TGAAAGTGATGGAAACTGAT+TGG - chr4.1:20910330-20910349 None:intergenic 35.0%
! TTCTTTTATGCATTTGGGCT+AGG + chr4.1:20910674-20910693 MS.gene31940:intron 35.0%
!! AGGAGTATGAGCTTTTACAA+TGG - chr4.1:20913198-20913217 None:intergenic 35.0%
!! ATAGCTCTATTGCTATTTCG+CGG - chr4.1:20910363-20910382 None:intergenic 35.0%
!! CGAGAGATGATGGAAATAAA+AGG + chr4.1:20910254-20910273 MS.gene31940:intron 35.0%
!! GAGAACAAGTGATTGTTTTG+AGG - chr4.1:20912087-20912106 None:intergenic 35.0%
!! TATCCGTAAGTTTTTGGAAG+TGG + chr4.1:20912061-20912080 MS.gene31940:CDS 35.0%
!! TCATAATGCCGTTATTTCTG+GGG + chr4.1:20912833-20912852 MS.gene31940:intron 35.0%
!! TCCATCACACTTTGATTTTC+TGG - chr4.1:20912695-20912714 None:intergenic 35.0%
!! TTGTAATTTCCTAATGGGCT+TGG + chr4.1:20910914-20910933 MS.gene31940:CDS 35.0%
!!! AGGAAGTTTTGGACTTTTCT+TGG - chr4.1:20911810-20911829 None:intergenic 35.0%
!!! ATGTTTTGAAAATGCCGCAA+TGG + chr4.1:20912250-20912269 MS.gene31940:CDS 35.0%
AACCAACTTATAGGGTTCTC+TGG + chr4.1:20912294-20912313 MS.gene31940:CDS 40.0%
AACCACTGAATGGAAAATCC+CGG + chr4.1:20914323-20914342 MS.gene31940:CDS 40.0%
AAGAATACTGTGGATCTACG+AGG + chr4.1:20914409-20914428 MS.gene31940:CDS 40.0%
AAGATTGTTTCATCATCCCC+AGG - chr4.1:20913335-20913354 None:intergenic 40.0%
ACATTCAAGACCCAACAGAT+TGG - chr4.1:20914207-20914226 None:intergenic 40.0%
ACCAACTTATAGGGTTCTCT+GGG + chr4.1:20912295-20912314 MS.gene31940:CDS 40.0%
AGCATTCACTTCCACTTCAA+TGG + chr4.1:20909772-20909791 MS.gene31940:CDS 40.0%
AGGCCACTTCCAAAAACTTA+CGG - chr4.1:20912067-20912086 None:intergenic 40.0%
AGGTTGCAATTCTGTTGAAG+AGG + chr4.1:20911451-20911470 MS.gene31940:CDS 40.0%
ATAGCCTCAAAACTCTCGAA+TGG + chr4.1:20909726-20909745 MS.gene31940:CDS 40.0%
CATTCACACAGGTTTGAACT+TGG + chr4.1:20910058-20910077 MS.gene31940:intron 40.0%
CCGCAGATATTGTAAGATAC+TGG - chr4.1:20912162-20912181 None:intergenic 40.0%
CCTATGCTCAATGGATGAAT+GGG + chr4.1:20911396-20911415 MS.gene31940:CDS 40.0%
CTATGCTCAATGGATGAATG+GGG + chr4.1:20911397-20911416 MS.gene31940:CDS 40.0%
CTCATTGCTTTGCACTTTCT+TGG + chr4.1:20912929-20912948 MS.gene31940:intron 40.0%
CTCCAATATCTGCAAGGATA+AGG - chr4.1:20911841-20911860 None:intergenic 40.0%
CTTCCTTCAATAAAGAGTCC+AGG - chr4.1:20911046-20911065 None:intergenic 40.0%
GACATTCAATTACAGACTGC+AGG - chr4.1:20912893-20912912 None:intergenic 40.0%
GACCTTATCCTTGCAGATAT+TGG + chr4.1:20911836-20911855 MS.gene31940:CDS 40.0%
GATAATGTCACACTAAGGTC+TGG + chr4.1:20911572-20911591 MS.gene31940:CDS 40.0%
GCAATCAAGGAATCATGCAT+TGG - chr4.1:20910489-20910508 None:intergenic 40.0%
GCATCACTTATGTCAAAAGC+CGG + chr4.1:20911770-20911789 MS.gene31940:CDS 40.0%
GCATTCACTTCCACTTCAAT+GGG + chr4.1:20909773-20909792 MS.gene31940:CDS 40.0%
GCATTCAGAACTATACCTTC+TGG - chr4.1:20911173-20911192 None:intergenic 40.0%
GGGAATAGTCAACAATCTAC+CGG - chr4.1:20909957-20909976 None:intergenic 40.0%
GGGCAATCTAATGAAAGTGA+TGG - chr4.1:20910341-20910360 None:intergenic 40.0%
GTCTGGAAATTCTTCTGAGT+TGG + chr4.1:20911589-20911608 MS.gene31940:CDS 40.0%
GTTAAAGGCTCAAGCTGAAA+AGG + chr4.1:20912478-20912497 MS.gene31940:CDS 40.0%
GTTCTGATCTAATGATCTCC+AGG - chr4.1:20911004-20911023 None:intergenic 40.0%
TAGACGTGAAACGATGCTTA+TGG + chr4.1:20913025-20913044 MS.gene31940:CDS 40.0%
TCTGTACACTAACGCTTTGA+AGG + chr4.1:20914238-20914257 MS.gene31940:intron 40.0%
TGAAACGATGCTTATGGCAA+AGG + chr4.1:20913031-20913050 MS.gene31940:CDS 40.0%
TGAAGAGGACAATGACATTG+CGG + chr4.1:20911466-20911485 MS.gene31940:CDS 40.0%
TGGGGATGATGAAACAATCT+TGG + chr4.1:20913334-20913353 MS.gene31940:CDS 40.0%
TGTCAAGGAAGAAAACAGAG+TGG + chr4.1:20913525-20913544 MS.gene31940:intron 40.0%
TGTTCATCTCTAAGTTACCC+CGG - chr4.1:20914345-20914364 None:intergenic 40.0%
TTAGAGATGAACAGCAGCAA+TGG + chr4.1:20914352-20914371 MS.gene31940:CDS 40.0%
TTAGTAAGAATTGGGGCATG+TGG + chr4.1:20913967-20913986 MS.gene31940:intron 40.0%
TTCAGTTTAGGTACTCTTGG+AGG + chr4.1:20911431-20911450 MS.gene31940:CDS 40.0%
TTGCATCCTCTAACTCTTGT+TGG - chr4.1:20913070-20913089 None:intergenic 40.0%
TTGGATATATCCAATAGCGG+AGG + chr4.1:20913885-20913904 MS.gene31940:intron 40.0%
! ACTCTGTTTTCTTCCTTGAC+AGG - chr4.1:20913526-20913545 None:intergenic 40.0%
! AGGTCAAACCAAGGAAGTTT+TGG - chr4.1:20911821-20911840 None:intergenic 40.0%
! AGGTTTGATCGAGAAGCTTT+TGG - chr4.1:20909853-20909872 None:intergenic 40.0%
! AGTTCCATTCGAGAGTTTTG+AGG - chr4.1:20909733-20909752 None:intergenic 40.0%
! CAACAACAACTCGACTTTTC+TGG + chr4.1:20909893-20909912 MS.gene31940:CDS 40.0%
! CAAGGGACTGCAATTTTGAA+GGG - chr4.1:20912004-20912023 None:intergenic 40.0%
! CTCACGTATCCGTAAGTTTT+TGG + chr4.1:20912055-20912074 MS.gene31940:CDS 40.0%
! CTTATCTAGTGAGTTGGGAA+CGG + chr4.1:20913588-20913607 MS.gene31940:intron 40.0%
! CTTTTGACATAAGTGATGCC+AGG - chr4.1:20911769-20911788 None:intergenic 40.0%
! GAAAAGTCGAGTTGTTGTTG+AGG - chr4.1:20909893-20909912 None:intergenic 40.0%
! GGGAGTATGTAAATAGCTAG+AGG + chr4.1:20913906-20913925 MS.gene31940:intron 40.0%
! GTTGATGTCGTTTAGAACCT+TGG - chr4.1:20910556-20910575 None:intergenic 40.0%
! TAGGCTTTCAAACTCTGAAG+CGG + chr4.1:20911259-20911278 MS.gene31940:CDS 40.0%
! TCAAGGGACTGCAATTTTGA+AGG - chr4.1:20912005-20912024 None:intergenic 40.0%
! TGGATATATCCAATAGCGGA+GGG + chr4.1:20913886-20913905 MS.gene31940:intron 40.0%
! TTGTTGTTGAGGAATGAGTC+TGG - chr4.1:20909882-20909901 None:intergenic 40.0%
! TTTTGCAAAGATCCAAAGGG+AGG + chr4.1:20912989-20913008 MS.gene31940:intron 40.0%
!! AACCCTATAAGTTGGTTGCA+AGG - chr4.1:20912291-20912310 None:intergenic 40.0%
!! AAGGGACTGCAATTTTGAAG+GGG - chr4.1:20912003-20912022 None:intergenic 40.0%
!! AAGTGTGATGGATGTTGTGA+AGG + chr4.1:20912703-20912722 MS.gene31940:intron 40.0%
!! CTCTGGAGCAACATACTTTA+TGG + chr4.1:20911199-20911218 MS.gene31940:CDS 40.0%
!! GGGTAATGGAAATGGAACAA+TGG + chr4.1:20911610-20911629 MS.gene31940:CDS 40.0%
!! TAGCTCTATTGCTATTTCGC+GGG - chr4.1:20910362-20910381 None:intergenic 40.0%
!! TCTGAGTTGGGTAATGGAAA+TGG + chr4.1:20911602-20911621 MS.gene31940:CDS 40.0%
!!! AGTTTTGGACTTTTCTTGGC+AGG - chr4.1:20911806-20911825 None:intergenic 40.0%
!!! ATTTTGAAGTCAACTGGCAC+AGG - chr4.1:20911671-20911690 None:intergenic 40.0%
!!! GCCCCAAACATAGAGTTTTT+TGG + chr4.1:20913866-20913885 MS.gene31940:intron 40.0%
!!! TTCGAGAGTTTTGAGGCTAT+CGG - chr4.1:20909726-20909745 None:intergenic 40.0%
!!! TTTTGAAGTCAACTGGCACA+GGG - chr4.1:20911670-20911689 None:intergenic 40.0%
AAAGCTCATACTCCTGCTGT+TGG + chr4.1:20913203-20913222 MS.gene31940:CDS 45.0%
AAATAGCTAGAGGGGTTGAG+AGG + chr4.1:20913916-20913935 MS.gene31940:intron 45.0%
AACTGATCCTTCAGAAGGTG+TGG + chr4.1:20912127-20912146 MS.gene31940:CDS 45.0%
AAGCTATCCTCGAGAGATGA+TGG + chr4.1:20910244-20910263 MS.gene31940:intron 45.0%
AAGGAAAAGAGTGAGGGAGA+CGG - chr4.1:20912963-20912982 None:intergenic 45.0%
AAGGTTTGAAGGAGAAGCGA+GGG - chr4.1:20909667-20909686 None:intergenic 45.0%
AATAGCTAGAGGGGTTGAGA+GGG + chr4.1:20913917-20913936 MS.gene31940:intron 45.0%
ACAGGTCCAACAAGAGTTAG+AGG + chr4.1:20913061-20913080 MS.gene31940:CDS 45.0%
ACCACTGAATGGAAAATCCC+GGG + chr4.1:20914324-20914343 MS.gene31940:CDS 45.0%
AGTGGAACTGATCCTTCAGA+AGG + chr4.1:20912122-20912141 MS.gene31940:CDS 45.0%
ATCTCAGGACCTAATACTGG+AGG + chr4.1:20911716-20911735 MS.gene31940:CDS 45.0%
ATTTGCACCTGCCAATCTGT+TGG + chr4.1:20914193-20914212 MS.gene31940:intron 45.0%
CAATCTACCGGAAACAGCAA+CGG - chr4.1:20909945-20909964 None:intergenic 45.0%
CCAACTTATAGGGTTCTCTG+GGG + chr4.1:20912296-20912315 MS.gene31940:CDS 45.0%
CCCATTCATCCATTGAGCAT+AGG - chr4.1:20911399-20911418 None:intergenic 45.0%
GATAAGACAGTTAGAGCGGA+AGG + chr4.1:20913615-20913634 MS.gene31940:intron 45.0%
GCAAGGATAAGGTCAAACCA+AGG - chr4.1:20911830-20911849 None:intergenic 45.0%
GCATCGTTTCACGTCTATCA+AGG - chr4.1:20913022-20913041 None:intergenic 45.0%
GCCTATGCTCAATGGATGAA+TGG + chr4.1:20911395-20911414 MS.gene31940:CDS 45.0%
GCTCTATCAGTCATTACAGG+AGG + chr4.1:20912445-20912464 MS.gene31940:CDS 45.0%
GGTGATCTCCAATATCTGCA+AGG - chr4.1:20911847-20911866 None:intergenic 45.0%
GGTTCAAAATGAGTGACACG+AGG - chr4.1:20914571-20914590 None:intergenic 45.0%
GTAGCAGAAGCAAGGTTTGA+AGG - chr4.1:20909678-20909697 None:intergenic 45.0%
GTCATCTCAGGACCTAATAC+TGG + chr4.1:20911713-20911732 MS.gene31940:CDS 45.0%
GTTCATCTCTAAGTTACCCC+GGG - chr4.1:20914344-20914363 None:intergenic 45.0%
GTTGCAGGATTCTTTGCACT+TGG - chr4.1:20913416-20913435 None:intergenic 45.0%
TAATACATGGGATGGGCACT+GGG + chr4.1:20914506-20914525 MS.gene31940:CDS 45.0%
TATGGCAAAGGAAGCTCAAC+AGG + chr4.1:20913043-20913062 MS.gene31940:CDS 45.0%
TCTCAGGACCTAATACTGGA+GGG + chr4.1:20911717-20911736 MS.gene31940:CDS 45.0%
TCTGCGGGAACATGTTAACT+TGG + chr4.1:20912175-20912194 MS.gene31940:CDS 45.0%
TGATAGAGCAAGTGAAGACC+TGG + chr4.1:20910983-20911002 MS.gene31940:CDS 45.0%
TGATGGAAACTGATTGGGAG+AGG - chr4.1:20910324-20910343 None:intergenic 45.0%
TGCAGATATTGGAGATCACC+AGG + chr4.1:20911847-20911866 MS.gene31940:CDS 45.0%
TGCTGAGAGTTGCTTGCATA+TGG - chr4.1:20909756-20909775 None:intergenic 45.0%
TTACATACTCCCTCCGCTAT+TGG - chr4.1:20913898-20913917 None:intergenic 45.0%
TTCAATGAAAACGTTGGGCC+TGG + chr4.1:20911748-20911767 MS.gene31940:CDS 45.0%
TTCTTAGATGTTTGCACCGC+TGG - chr4.1:20914394-20914413 None:intergenic 45.0%
TTTGCACCTGCCAATCTGTT+GGG + chr4.1:20914194-20914213 MS.gene31940:intron 45.0%
! AACTAGTTCTCCCACTCATC+AGG + chr4.1:20913433-20913452 MS.gene31940:CDS 45.0%
! ACTAGTTCTCCCACTCATCA+GGG + chr4.1:20913434-20913453 MS.gene31940:CDS 45.0%
! GCAGTTTTCCCTCCAGTATT+AGG - chr4.1:20911728-20911747 None:intergenic 45.0%
! GTTTGTTGATGGGGATGAAG+AGG - chr4.1:20909637-20909656 None:intergenic 45.0%
! TAGATCTGGAACTAGAGTGG+TGG + chr4.1:20911691-20911710 MS.gene31940:CDS 45.0%
! TGCCGCAATGGAATTTTCAC+TGG + chr4.1:20912262-20912281 MS.gene31940:CDS 45.0%
!! AGAAGCTTTTGGCTGTCTGT+TGG - chr4.1:20909842-20909861 None:intergenic 45.0%
!! AGCTCTATTGCTATTTCGCG+GGG - chr4.1:20910361-20910380 None:intergenic 45.0%
!! AGGGATTGAGGGTTTGTTGA+TGG - chr4.1:20909648-20909667 None:intergenic 45.0%
!! ATTCTCTCCGTTGCTGTTTC+CGG + chr4.1:20909935-20909954 MS.gene31940:CDS 45.0%
!! GCCGTTATTTCTGGGGAAAA+TGG + chr4.1:20912840-20912859 MS.gene31940:intron 45.0%
!! GGATTGAGGGTTTGTTGATG+GGG - chr4.1:20909646-20909665 None:intergenic 45.0%
!! GGGATTGAGGGTTTGTTGAT+GGG - chr4.1:20909647-20909666 None:intergenic 45.0%
!! TGTTTTCTAGAGACGACTCC+AGG - chr4.1:20911547-20911566 None:intergenic 45.0%
!!! CGTCTCAAATTTTTCGGGCT+GGG + chr4.1:20911069-20911088 MS.gene31940:CDS 45.0%
!!! GAGTTTTGAGGCTATCGGAT+TGG - chr4.1:20909721-20909740 None:intergenic 45.0%
!!! GTCTCAAATTTTTCGGGCTG+GGG + chr4.1:20911070-20911089 MS.gene31940:CDS 45.0%
!!! TCGTCTCAAATTTTTCGGGC+TGG + chr4.1:20911068-20911087 MS.gene31940:CDS 45.0%
!!! TCTCAAATTTTTCGGGCTGG+GGG + chr4.1:20911071-20911090 MS.gene31940:CDS 45.0%
AACCAGAACAGCAGCAAGAG+CGG + chr4.1:20912414-20912433 MS.gene31940:CDS 50.0%
AAGAACACTCGCTGCTTCCA+GGG + chr4.1:20909994-20910013 MS.gene31940:CDS 50.0%
AAGGAGAAGCGAGGGATTGA+GGG - chr4.1:20909659-20909678 None:intergenic 50.0%
ACCTGCTTTCCCTGATGAGT+GGG - chr4.1:20913446-20913465 None:intergenic 50.0%
ACTAGAGTGGTGGTCATCTC+AGG + chr4.1:20911701-20911720 MS.gene31940:CDS 50.0%
AGAGACGACTCCAGGAGTAA+TGG - chr4.1:20911539-20911558 None:intergenic 50.0%
AGCAGCGAGTGTTCTTCGAA+CGG - chr4.1:20909990-20910009 None:intergenic 50.0%
AGCTGCGATCCATCTTGAGA+TGG + chr4.1:20914447-20914466 MS.gene31940:CDS 50.0%
CAAGAGCTGCCTATGCTCAA+TGG + chr4.1:20911387-20911406 MS.gene31940:CDS 50.0%
CAAGGTTTGAAGGAGAAGCG+AGG - chr4.1:20909668-20909687 None:intergenic 50.0%
CAAGTCCGTGTGAAGGGATT+GGG + chr4.1:20913281-20913300 MS.gene31940:CDS 50.0%
CACAGTGGTAGAATTGCCTG+GGG + chr4.1:20913316-20913335 MS.gene31940:CDS 50.0%
CCACAGTGGTAGAATTGCCT+GGG + chr4.1:20913315-20913334 MS.gene31940:CDS 50.0%
CCACTGAATGGAAAATCCCG+GGG + chr4.1:20914325-20914344 MS.gene31940:CDS 50.0%
CCCCAGAGAACCCTATAAGT+TGG - chr4.1:20912299-20912318 None:intergenic 50.0%
GAAAGAGCCACACCTTCTGA+AGG - chr4.1:20912137-20912156 None:intergenic 50.0%
GCAGGATTCTTTGCACTTGG+TGG - chr4.1:20913413-20913432 None:intergenic 50.0%
GGGAGGAAAATTAGCCACAG+TGG + chr4.1:20913301-20913320 MS.gene31940:CDS 50.0%
GTAATACATGGGATGGGCAC+TGG + chr4.1:20914505-20914524 MS.gene31940:CDS 50.0%
TACCTGCTTTCCCTGATGAG+TGG - chr4.1:20913447-20913466 None:intergenic 50.0%
TAGAATGTGCGTGGGCATCA+GGG + chr4.1:20911127-20911146 MS.gene31940:CDS 50.0%
TATGCGGCATCCATTACTCC+TGG + chr4.1:20911526-20911545 MS.gene31940:CDS 50.0%
TCAAGACCCAACAGATTGGC+AGG - chr4.1:20914203-20914222 None:intergenic 50.0%
TCGGTTGAGTAGCAGAAGCA+AGG - chr4.1:20909686-20909705 None:intergenic 50.0%
TCTTCGAACGGTGCAAAGCT+CGG - chr4.1:20909978-20909997 None:intergenic 50.0%
TGACCATGCACAAAAGTGGG+TGG + chr4.1:20912382-20912401 MS.gene31940:CDS 50.0%
TGAGTGGGAGAACTAGTTGC+AGG - chr4.1:20913431-20913450 None:intergenic 50.0%
TTCCTCCCAATCCCTTCACA+CGG - chr4.1:20913289-20913308 None:intergenic 50.0%
TTCGATAAGCTGTGCGACCA+AGG + chr4.1:20910536-20910555 MS.gene31940:intron 50.0%
TTGAGGAATGAGTCTGGCAG+CGG - chr4.1:20909876-20909895 None:intergenic 50.0%
! AATACATGGGATGGGCACTG+GGG + chr4.1:20914507-20914526 MS.gene31940:CDS 50.0%
! AGGGTTCTCTGGGGATGTAT+CGG + chr4.1:20912305-20912324 MS.gene31940:CDS 50.0%
! CGCTGATTGCCATCTCAAGA+TGG - chr4.1:20914459-20914478 None:intergenic 50.0%
! CGGACTTGCTCTCCAAATTG+TGG - chr4.1:20913269-20913288 None:intergenic 50.0%
! CGTCGATCTAGAATGTGCGT+GGG + chr4.1:20911119-20911138 MS.gene31940:CDS 50.0%
! CTAGTGAGTTGGGAACGGTT+GGG + chr4.1:20913593-20913612 MS.gene31940:intron 50.0%
! GCTATCGGATTGGACTGAGT+TGG - chr4.1:20909711-20909730 None:intergenic 50.0%
! GCTTCTAAAAGCGCGTCACA+AGG + chr4.1:20911632-20911651 MS.gene31940:CDS 50.0%
! GGATTGGACTGAGTTGGACT+CGG - chr4.1:20909705-20909724 None:intergenic 50.0%
! TCTAGTGAGTTGGGAACGGT+TGG + chr4.1:20913592-20913611 MS.gene31940:intron 50.0%
!! TCTCCACCCACTTTTGTGCA+TGG - chr4.1:20912388-20912407 None:intergenic 50.0%
AACAACGCCCGTTTACCCGT+CGG + chr4.1:20909809-20909828 MS.gene31940:CDS 55.0%
AATGCGATCAGCGCCACTGA+TGG - chr4.1:20913234-20913253 None:intergenic 55.0%
AGTACGTCCGACGGGTAAAC+GGG - chr4.1:20909819-20909838 None:intergenic 55.0%
ATGCGATCAGCGCCACTGAT+GGG - chr4.1:20913233-20913252 None:intergenic 55.0%
CAAGGTCTTCTGCCTCCCTT+TGG - chr4.1:20913004-20913023 None:intergenic 55.0%
CAATGACATTGCGGTCGTGC+AGG + chr4.1:20911475-20911494 MS.gene31940:CDS 55.0%
CCCAGGCAATTCTACCACTG+TGG - chr4.1:20913318-20913337 None:intergenic 55.0%
CTAGAATGTGCGTGGGCATC+AGG + chr4.1:20911126-20911145 MS.gene31940:CDS 55.0%
CTGATGGGAGAACCAACAGC+AGG - chr4.1:20913218-20913237 None:intergenic 55.0%
CTTCGAACGGTGCAAAGCTC+GGG - chr4.1:20909977-20909996 None:intergenic 55.0%
CTTGGCAGGCAGATGCATTC+CGG - chr4.1:20911792-20911811 None:intergenic 55.0%
GAAGAACACTCGCTGCTTCC+AGG + chr4.1:20909993-20910012 MS.gene31940:CDS 55.0%
GAAGGAGAAGCGAGGGATTG+AGG - chr4.1:20909660-20909679 None:intergenic 55.0%
GAGTACGTCCGACGGGTAAA+CGG - chr4.1:20909820-20909839 None:intergenic 55.0%
GAGTGAGGGAGACGGATAGA+CGG - chr4.1:20912955-20912974 None:intergenic 55.0%
GATGGGGATGAAGAGGTTGC+AGG - chr4.1:20909630-20909649 None:intergenic 55.0%
GCAAGTCCGTGTGAAGGGAT+TGG + chr4.1:20913280-20913299 MS.gene31940:CDS 55.0%
GCCACAGTGGTAGAATTGCC+TGG + chr4.1:20913314-20913333 MS.gene31940:CDS 55.0%
GGAGAGCAAGTCCGTGTGAA+GGG + chr4.1:20913275-20913294 MS.gene31940:CDS 55.0%
GGATCTACGAGGTATGCGAC+TGG + chr4.1:20914420-20914439 MS.gene31940:CDS 55.0%
GTATGTTGCTCCAGAGCTGC+TGG - chr4.1:20911195-20911214 None:intergenic 55.0%
GTCTGTTGGAGTACGTCCGA+CGG - chr4.1:20909828-20909847 None:intergenic 55.0%
TCCCACTCATCAGGGAAAGC+AGG + chr4.1:20913442-20913461 MS.gene31940:CDS 55.0%
TCTGTTGGAGTACGTCCGAC+GGG - chr4.1:20909827-20909846 None:intergenic 55.0%
TCTTGGCTATCCCCGAGGAT+TGG - chr4.1:20912771-20912790 None:intergenic 55.0%
TGAGGCACGGCATGATGTGT+TGG - chr4.1:20912737-20912756 None:intergenic 55.0%
TGGAGAGCAAGTCCGTGTGA+AGG + chr4.1:20913274-20913293 MS.gene31940:CDS 55.0%
TGGGCATCAGGGCTTCGTAT+AGG + chr4.1:20911138-20911157 MS.gene31940:CDS 55.0%
! CCCCGGGATTTTCCATTCAG+TGG - chr4.1:20914328-20914347 None:intergenic 55.0%
! GCGTCGATCTAGAATGTGCG+TGG + chr4.1:20911118-20911137 MS.gene31940:CDS 55.0%
! GTTCTGAATGCCAGCAGCTC+TGG + chr4.1:20911182-20911201 MS.gene31940:CDS 55.0%
!! GCTGTTGGTTCTCCCATCAG+TGG + chr4.1:20913218-20913237 MS.gene31940:CDS 55.0%
!! TTCAAACTCTGAAGCGGCCG+AGG + chr4.1:20911265-20911284 MS.gene31940:CDS 55.0%
ACAGCTCTTGGCTATCCCCG+AGG - chr4.1:20912776-20912795 None:intergenic 60.0%
AGGAATGAGTCTGGCAGCGG+AGG - chr4.1:20909873-20909892 None:intergenic 60.0%
AGGGGTTGAGAGGGAGAGAC+CGG + chr4.1:20913926-20913945 MS.gene31940:intron 60.0%
CTCCGCTCTTGCTGCTGTTC+TGG - chr4.1:20912419-20912438 None:intergenic 60.0%
GAACAGCAGCAAGAGCGGAG+AGG + chr4.1:20912419-20912438 MS.gene31940:CDS 60.0%
GTCCGTGTGAAGGGATTGGG+AGG + chr4.1:20913284-20913303 MS.gene31940:CDS 60.0%
TCCTGCGCTCCAAGCCCATT+AGG - chr4.1:20910926-20910945 None:intergenic 60.0%
! GACGGGTAAACGGGCGTTGT+TGG - chr4.1:20909810-20909829 None:intergenic 60.0%
! GGGTAAACGGGCGTTGTTGG+CGG - chr4.1:20909807-20909826 None:intergenic 60.0%
! TAAACGGGCGTTGTTGGCGG+CGG - chr4.1:20909804-20909823 None:intergenic 60.0%
!! TCCTAATGGGCTTGGAGCGC+AGG + chr4.1:20910922-20910941 MS.gene31940:CDS 60.0%
GGCGGAGGAGCCCATTGAAG+TGG - chr4.1:20909786-20909805 None:intergenic 65.0%
! ACGGGCGTTGTTGGCGGCGG+AGG - chr4.1:20909801-20909820 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 20909617 20914636 20909617 ID=MS.gene31940
chr4.1 mRNA 20909617 20914636 20909617 ID=MS.gene31940.t1;Parent=MS.gene31940
chr4.1 exon 20909617 20910068 20909617 ID=MS.gene31940.t1.exon1;Parent=MS.gene31940.t1
chr4.1 CDS 20909617 20910068 20909617 ID=cds.MS.gene31940.t1;Parent=MS.gene31940.t1
chr4.1 exon 20910884 20911868 20910884 ID=MS.gene31940.t1.exon2;Parent=MS.gene31940.t1
chr4.1 CDS 20910884 20911868 20910884 ID=cds.MS.gene31940.t1;Parent=MS.gene31940.t1
chr4.1 exon 20912017 20912541 20912017 ID=MS.gene31940.t1.exon3;Parent=MS.gene31940.t1
chr4.1 CDS 20912017 20912541 20912017 ID=cds.MS.gene31940.t1;Parent=MS.gene31940.t1
chr4.1 exon 20912999 20913463 20912999 ID=MS.gene31940.t1.exon4;Parent=MS.gene31940.t1
chr4.1 CDS 20912999 20913463 20912999 ID=cds.MS.gene31940.t1;Parent=MS.gene31940.t1
chr4.1 exon 20914322 20914636 20914322 ID=MS.gene31940.t1.exon5;Parent=MS.gene31940.t1
chr4.1 CDS 20914322 20914636 20914322 ID=cds.MS.gene31940.t1;Parent=MS.gene31940.t1
Gene Sequence

>MS.gene31940

ATGCAACTCACCTGCAACCTCTTCATCCCCATCAACAAACCCTCAATCCCTCGCTTCTCCTTCAAACCTTGCTTCTGCTACTCAACCGAGTCCAACTCAGTCCAATCCGATAGCCTCAAAACTCTCGAATGGAACTCCATATGCAAGCAACTCTCAGCATTCACTTCCACTTCAATGGGCTCCTCCGCCGCCAACAACGCCCGTTTACCCGTCGGACGTACTCCAACAGACAGCCAAAAGCTTCTCGATCAAACCTCCGCTGCCAGACTCATTCCTCAACAACAACTCGACTTTTCTGGAATACATGACTTGACTGACATTCTCTCCGTTGCTGTTTCCGGTAGATTGTTGACTATTCCCGAGCTTTGCACCGTTCGAAGAACACTCGCTGCTTCCAGGGAATTGTTTGATAGTTTGAAACACTTGGCTTCTGTATCTAATCATTCACACAGGTTTGAACTTGGAATCTAACTCAAAAACTCAATAGTTTAAGACATGTTTGGATAAACAACTTAACAAAGTGCTTATCATACAAGTGATTATGTATTATGTTTGAAGTTAGTAGTTCGATAACAAAAGATAAAATAAAATCAATTTGTTTTTATATAAGCTAGAAGATGTTTTCATAAGCTATCCTCGAGAGATGATGGAAATAAAAGGAAACAGTTTATGGGCACATCATAATCTATTAACATGTTACATAACCTCTCCCAATCAGTTTCCATCACTTTCATTAGATTGCCCCGCGAAATAGCAATAGAGCTATTTCAGACATTTCTAATTGATGGCTACCGGTAGATTAGCTCAAATAAGTCAATCCAAACATACGCTAAGTAATAGTTGTTTTAAGTAACACTTATTCATTCTTACCAATGCATGATTCCTTGATTGCTTAGAGAATTTCTGTATGGAGATTAAATTCGATAAGCTGTGCGACCAAGGTTCTAAACGACATCAACGTTTTTGATGTTTATGGGAAGTCATATCAGTCAGTTTGAGTGCACTACAAGTTTTTTTTTTTTTTTCTTTTCATAATCTGATTCAGTTCACAAGCAGCTTCTTTTATGCATTTGGGCTAGGTGTTGTATTTTTCTTGACAAAGTTCGGAGCATAGATCATTTCATAATGTCATGTCCCAATAAGGTCTTAAAAGAGTGTTAGTAATACTCTAATTGCACTTGTGCTTTTGGGCATAACTGATTCCTTTTACAAATCCAAAGTAAAAGTTCACAAAAATAACTTCGCTGATGCAATTGTTTTCAATTAGGTACTCACCCCTTCTTGAAATACTGCAAAATTGTAATTTCCTAATGGGCTTGGAGCGCAGGATAGAATTTTGCATAGATTGCAATCTTTTGGTAATTCTTGATAGAGCAAGTGAAGACCTGGAGATCATTAGATCAGAACGAAAAAGGAACATAGAAATCCTGGACTCTTTATTGAAGGAAGTATCGTCTCAAATTTTTCGGGCTGGGGGTATTGACAGACCATTTATTACTAAGCGTCGATCTAGAATGTGCGTGGGCATCAGGGCTTCGTATAGGTATTTGCTTCCAGAAGGTATAGTTCTGAATGCCAGCAGCTCTGGAGCAACATACTTTATGGAACCGAAAGAAGCAATAGATTTGAACAACATGGAAGTTAGGCTTTCAAACTCTGAAGCGGCCGAGGAAAGAGCAATTTTGAGTATGCTTGCATCTGAAATAGCAAATTCAGAATCAGAGATAAAATATTTGTTGGATAAAATTCTTGAGGTTGATCTTGCTTTTGCAAGAGCTGCCTATGCTCAATGGATGAATGGGGTATGTCCAATTTTCAGTTTAGGTACTCTTGGAGGTTGCAATTCTGTTGAAGAGGACAATGACATTGCGGTCGTGCAGGATGACGATTTAACAGTAAATATTGAGGGTATGCGGCATCCATTACTCCTGGAGTCGTCTCTAGAAAACATTTCAGATAATGTCACACTAAGGTCTGGAAATTCTTCTGAGTTGGGTAATGGAAATGGAACAATGGCTTCTAAAAGCGCGTCACAAGGCATAACAGACTTCCCTGTGCCAGTTGACTTCAAAATTAGATCTGGAACTAGAGTGGTGGTCATCTCAGGACCTAATACTGGAGGGAAAACTGCTTCAATGAAAACGTTGGGCCTGGCATCACTTATGTCAAAAGCCGGAATGCATCTGCCTGCCAAGAAAAGTCCAAAACTTCCTTGGTTTGACCTTATCCTTGCAGATATTGGAGATCACCAGGTAATATCTGAACTTTTTTATGCATGATGAAGATTTTTTATTATATATATATATATATATATATATATATATATATATATATATATATATATATATCATGTGGCTGTTTCATTTGTGTCTGATCTTTTTCTCCCCTTCAAAATTGCAGTCCCTTGAACAAAATCTCTCAACTTTTAGTGGGCACATCTCACGTATCCGTAAGTTTTTGGAAGTGGCCTCAAAACAATCACTTGTTCTCATTGATGAAATTGGTAGTGGAACTGATCCTTCAGAAGGTGTGGCTCTTTCTGCCAGTATCTTACAATATCTGCGGGAACATGTTAACTTGGCTGTTGTGACCACTCATTATGCTGATCTAAGTACTTTGAAGGAAAGGGATGCATGTTTTGAAAATGCCGCAATGGAATTTTCACTGGAAACCTTGCAACCAACTTATAGGGTTCTCTGGGGATGTATCGGTGATTCAAATGCATTAAGCATAGTGCAATCTATTGGCTTTGATAAAAATATAATTGACCATGCACAAAAGTGGGTGGAGAAATTAAAACCAGAACAGCAGCAAGAGCGGAGAGGAATGCTCTATCAGTCATTACAGGAGGAAAAAAATCGGTTAAAGGCTCAAGCTGAAAAGGCTGCTTCCATTCATGCAGAAATTATGAACGTGTACTCTGAGGTACAATCTAGCTGTTCAGTTAGAAAGAGATAATGTGTTTCTTTATTATAGTTTCTTCTCCTTGGTCCATATAGTATGATAATCATTATTGTCCCTTTTAAAGTTTATCTGAAATTTGCATTGTTCATAAGTAATGACTCAGTAAATTGACCAGAAAATCAAAGTGTGATGGATGTTGTGAAGGTCTTTTGACCAACACATCATGCCGTGCCTCATTAATAGATATCCAATCCTCGGGGATAGCCAAGAGCTGTTAATTTAAATATGTAGCGCCTCTTCCATCCAAAATTTTCATAATGCCGTTATTTCTGGGGAAAATGGTTCAGCGTAAGAATTGTAGAGCATTTGCCTGCAGTCTGTAATTGAATGTCATCATATTTGCTGTTGCTCATTGCTTTGCACTTTCTTGGCCGTCTATCCGTCTCCCTCACTCTTTTCCTTTTCTTCTTTTGCAAAGATCCAAAGGGAGGCAGAAGACCTTGATAGACGTGAAACGATGCTTATGGCAAAGGAAGCTCAACAGGTCCAACAAGAGTTAGAGGATGCAAAATCTCAAATGGAAATTGTAATACAGAAATTCGAAAAGCAACTAAAAGATTTGGGACGCAACCAACTCAATTCAATAATTAAAGAATCTGAAACTGCAATTGCCTCCATTGTAAAAGCTCATACTCCTGCTGTTGGTTCTCCCATCAGTGGCGCTGATCGCATTACATCATATACTCCACAATTTGGAGAGCAAGTCCGTGTGAAGGGATTGGGAGGAAAATTAGCCACAGTGGTAGAATTGCCTGGGGATGATGAAACAATCTTGGTACAGTATGGTAAAGTGAAAGTACGTGTGAAGAAAAATCGCATCAGAGCTATTCCACCAAGTGCAAAGAATCCTGCAACTAGTTCTCCCACTCATCAGGGAAAGCAGGTATGTACAAAGAAATCTTTGCTGTCATATAAATAATCTAATTCAATTAATATAGTTAACCTGTCAAGGAAGAAAACAGAGTGGTATACGTTTCCATTAAGAAAGTTATTTTGCAAGCAGTAATCTTATCTAGTGAGTTGGGAACGGTTGGGATAAGACAGTTAGAGCGGAAGGTTACTAGTTCGCGCTAGTTAAGAATACTATAAAATCACGTTTAATTTTTTGATGTAATAAAAAATATAATTGTATTATCTAAAATATTCTTCATGGAAACTTGTTTCATATAAATAAAAGTTATTGGAAAATGAAATCCAAATTTTATTGAAAGGTATTTTATATTTAATCTGGCATTTTTTCTTTTGAACTAATGGTAAAATTAATTTAGAATTGATATATTTTGGAGCCCCAAACATAGAGTTTTTTGGATATATCCAATAGCGGAGGGAGTATGTAAATAGCTAGAGGGGTTGAGAGGGAGAGACCGGAGAGTATTTGTTACTATTTTAGTAAGAATTGGGGCATGTGGAGTTGTAGATCCTCATTGTTCTATCATGTAATTTGGGTAGCTTTCTCCTGTTTTCTGTAATAAATACCAGCTTCCTAACATCATATTTGGAAATTGGAACTTCAGATCATCCTATAATATAGGCACATTGAATTGAATTTTCTATAAAATTAATCTGTCTCCTTTTTAAAATTGGCTTCTTAACCTAATTTGATTTAGACAAAATTTGCACCTGCCAATCTGTTGGGTCTTGAATGTTTGTAGAATTTTCTGTACACTAACGCTTTGAAGGATGACAGTAATTGATCTATATCAAACTGCTGAGTTTGAACACTGTTGATTTACTATTGTAGAAACCACTGAATGGAAAATCCCGGGGTAACTTAGAGATGAACAGCAGCAATGGTAATATTTATTATGGTCCAGCGGTGCAAACATCTAAGAATACTGTGGATCTACGAGGTATGCGACTGGAAGAAGCTGCGATCCATCTTGAGATGGCAATCAGCGCAAGTCAGCCATATTCAGTTCTCTTTGTAATACATGGGATGGGCACTGGGGCTGTTAAAGATCGTGCACTTGCTATTCTGCAAAAGCATCCTCGTGTCACTCATTTTGAACCAGAAAGTCCAATGAATTATGGATGTACTGTTGCACGTGTTAAGTGA
Protein sequence

>MS.gene31940.t1

MQLTCNLFIPINKPSIPRFSFKPCFCYSTESNSVQSDSLKTLEWNSICKQLSAFTSTSMGSSAANNARLPVGRTPTDSQKLLDQTSAARLIPQQQLDFSGIHDLTDILSVAVSGRLLTIPELCTVRRTLAASRELFDSLKHLASVSNHSHRYSPLLEILQNCNFLMGLERRIEFCIDCNLLVILDRASEDLEIIRSERKRNIEILDSLLKEVSSQIFRAGGIDRPFITKRRSRMCVGIRASYRYLLPEGIVLNASSSGATYFMEPKEAIDLNNMEVRLSNSEAAEERAILSMLASEIANSESEIKYLLDKILEVDLAFARAAYAQWMNGVCPIFSLGTLGGCNSVEEDNDIAVVQDDDLTVNIEGMRHPLLLESSLENISDNVTLRSGNSSELGNGNGTMASKSASQGITDFPVPVDFKIRSGTRVVVISGPNTGGKTASMKTLGLASLMSKAGMHLPAKKSPKLPWFDLILADIGDHQSLEQNLSTFSGHISRIRKFLEVASKQSLVLIDEIGSGTDPSEGVALSASILQYLREHVNLAVVTTHYADLSTLKERDACFENAAMEFSLETLQPTYRVLWGCIGDSNALSIVQSIGFDKNIIDHAQKWVEKLKPEQQQERRGMLYQSLQEEKNRLKAQAEKAASIHAEIMNVYSEIQREAEDLDRRETMLMAKEAQQVQQELEDAKSQMEIVIQKFEKQLKDLGRNQLNSIIKESETAIASIVKAHTPAVGSPISGADRITSYTPQFGEQVRVKGLGGKLATVVELPGDDETILVQYGKVKVRVKKNRIRAIPPSAKNPATSSPTHQGKQKPLNGKSRGNLEMNSSNGNIYYGPAVQTSKNTVDLRGMRLEEAAIHLEMAISASQPYSVLFVIHGMGTGAVKDRALAILQKHPRVTHFEPESPMNYGCTVARVK