AlfalfaGEDB | MS.gene32705

M. sativa cultivar XinJiangDaYe / MS.gene32705

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF01535.23 PF12854.10 PF12921.10 PF13041.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene32705.t1	GAU27050.1	81.2	558	89	1	24	565	98	655	1.20E-77	301.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene32705.t1	Q9SZ52	40.5	111	65	1	454	563	698	808	3.2e-18	95.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene32705.t1	A0A2Z6MTN1	81.2	558	89	1	24	565	98	655	8.9e-78	301.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene32705	0.839184	1.84E-57	-1.69E-46
MS.gene049217	MS.gene32705	0.815675	8.19E-52	-1.69E-46
MS.gene049284	MS.gene32705	0.817742	2.82E-52	-1.69E-46
MS.gene049351	MS.gene32705	0.865074	7.69E-65	-1.69E-46
MS.gene049356	MS.gene32705	0.840466	8.55E-58	-1.69E-46
MS.gene049369	MS.gene32705	0.858231	9.50E-63	-1.69E-46
MS.gene049427	MS.gene32705	0.877808	4.67E-69	-1.69E-46
MS.gene049491	MS.gene32705	0.85214	5.61E-61	-1.69E-46
MS.gene049609	MS.gene32705	0.813397	2.61E-51	-1.69E-46
MS.gene049614	MS.gene32705	0.81138	7.21E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene32705.t1	MTR_3g105900	74.024	820	78	5	9	693	130	949	0.0	1181
MS.gene32705.t1	MTR_3g105900	26.458	703	433	11	30	693	467	1124	3.27e-70	249
MS.gene32705.t1	MTR_3g105900	33.333	351	226	2	107	456	791	1134	9.07e-54	200
MS.gene32705.t1	MTR_3g105900	23.077	611	388	8	16	588	558	1124	9.75e-43	167
MS.gene32705.t1	MTR_5g095130	28.868	627	434	6	66	690	156	772	8.11e-84	283
MS.gene32705.t1	MTR_5g095130	27.157	626	424	5	97	693	223	845	1.08e-77	267
MS.gene32705.t1	MTR_5g095130	27.878	556	383	8	79	629	344	886	4.07e-68	240
MS.gene32705.t1	MTR_5g095130	29.221	462	316	5	18	477	388	840	3.60e-58	212
MS.gene32705.t1	MTR_5g095130	26.221	614	376	6	113	692	134	704	3.67e-58	212
MS.gene32705.t1	MTR_5g095130	28.883	412	285	2	16	426	455	859	4.57e-49	185

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene32705.t1	AT4G31850	47.808	707	338	4	18	693	233	939	0.0	646
MS.gene32705.t1	AT4G31850	23.985	788	446	11	16	693	336	1080	1.19e-60	221
MS.gene32705.t1	AT4G31850	25.490	663	442	11	31	651	456	1108	4.89e-59	216
MS.gene32705.t1	AT4G31850	20.915	306	238	4	390	693	73	376	6.09e-18	89.4
MS.gene32705.t1	AT3G06920	29.716	599	410	5	95	692	165	753	6.20e-83	281
MS.gene32705.t1	AT3G06920	25.972	643	409	7	97	675	202	841	8.28e-71	248
MS.gene32705.t1	AT3G06920	27.967	615	396	7	80	692	114	683	1.29e-68	241
MS.gene32705.t1	AT3G06920	28.265	559	377	10	79	629	323	865	6.00e-64	228
MS.gene32705.t1	AT3G06920	27.975	479	332	7	18	493	367	835	1.20e-52	196
MS.gene32705.t1	AT3G06920	26.444	450	323	2	16	464	434	876	6.05e-46	176

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Find 155 sgRNAs with CRISPR-Local

Find 253 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAATTTCTTCATCTGA+TGG	0.456665	3.1:+83784957	None:intergenic
AAATGAAGAGTATTGGTTTG+AGG	0.506055	3.1:-83786212	MS.gene32705:CDS
AAATGGACGATGAAGGATGT+GGG	0.632984	3.1:-83786107	MS.gene32705:CDS
AAATTGTAAGTAAAATTGTT+AGG	0.397250	3.1:+83784506	None:intergenic
AAGGCTCTTTCGATTAAAGG+CGG	0.617326	3.1:-83786471	MS.gene32705:CDS
AAGGGTTGAGGATGCAATCA+AGG	0.528508	3.1:-83784882	MS.gene32705:CDS
AATATTCTTATCAACGGATT+CGG	0.339470	3.1:-83784173	MS.gene32705:CDS
AATATTGTAAATAACACTGT+TGG	0.474117	3.1:+83784190	None:intergenic
AATTGTATGATTCTAGGGTT+GGG	0.490876	3.1:+83784612	None:intergenic
AATTTGTCTGTAAACCTGCC+TGG	0.540543	3.1:+83784840	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACAAAAGAATGATCTCAGAA+GGG	-	chr3.1:83785224-83785243	MS.gene32705:CDS	30.0%
ACAGACAAATTCACAATTCT+GGG	-	chr3.1:83786719-83786738	MS.gene32705:intron	30.0%
ACATACAACACTATCATCTA+TGG	-	chr3.1:83786525-83786544	MS.gene32705:CDS	30.0%
ACTTATAACACATTGATCTG+TGG	-	chr3.1:83785790-83785809	MS.gene32705:intron	30.0%
ATAAAGTTCATTGATCCTCT+TGG	+	chr3.1:83787090-83787109	None:intergenic	30.0%
ATGTAACCATGACAATGATT+TGG	-	chr3.1:83784778-83784797	MS.gene32705:CDS	30.0%
ATGTTATAGGTTACTGAATC+CGG	+	chr3.1:83786096-83786115	None:intergenic	30.0%
ATGTTATGGCTTATAGCATT+TGG	+	chr3.1:83787149-83787168	None:intergenic	30.0%
ATTATTAGATTTCACAAGCG+CGG	+	chr3.1:83787180-83787199	None:intergenic	30.0%
CAACAAATTCATAATGTTCC+CGG	+	chr3.1:83785311-83785330	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	83784165	83787404	83784165	ID=MS.gene32705
chr3.1	mRNA	83784165	83787404	83784165	ID=MS.gene32705.t1;Parent=MS.gene32705
chr3.1	exon	83787401	83787404	83787401	ID=MS.gene32705.t1.exon1;Parent=MS.gene32705.t1
chr3.1	CDS	83787401	83787404	83787401	ID=cds.MS.gene32705.t1;Parent=MS.gene32705.t1
chr3.1	exon	83786961	83787002	83786961	ID=MS.gene32705.t1.exon2;Parent=MS.gene32705.t1
chr3.1	CDS	83786961	83787002	83786961	ID=cds.MS.gene32705.t1;Parent=MS.gene32705.t1
chr3.1	exon	83785993	83786597	83785993	ID=MS.gene32705.t1.exon3;Parent=MS.gene32705.t1
chr3.1	CDS	83785993	83786597	83785993	ID=cds.MS.gene32705.t1;Parent=MS.gene32705.t1
chr3.1	exon	83784165	83785593	83784165	ID=MS.gene32705.t1.exon4;Parent=MS.gene32705.t1
chr3.1	CDS	83784165	83785593	83784165	ID=cds.MS.gene32705.t1;Parent=MS.gene32705.t1

Gene Sequence

>MS.gene32705

ATGGGTGAACACAAAAAAAAATGGCATTAAAGAAAAACTTAACTCTTTTTAATTTAAGAAGACCTAATTTTTTATTTTTTGGTGGTGGTGAGACGTAATTTTTTTTTTTTGTAGTGGTCGAGGTTCGAACCCCGACTCTTACATATTTTATGCATTGTTTATACCAACTGAGTTAAGCTCACGATAACAGACGTAATTTTTGTTTGATAGTAATTCCTAATTTTAAAAGATTTGACCAAAATAGAGTAAAATAAAAATAAAAAATAGTTAGCGATAACGTGATGGTGGCACCTCAAGCACTCAGAGCGGGTATCAAACAAAATCCAAAACTGAAAACTTCAAAATTTGTGGGAGACAGGTTAATCCACAAACACTCTCATAATTTTTGCTCTTCTATGACAGTCTTGCTTCTCTGCTCCTCAACAACCACATGTTGTAACAACGGTATGTCATTCTGCTATACTTTGACTGATACTCATTTCTATGTTCTCACCAATCATGGAGGACCAACCAATTTTGTCAAAATCAAAACTTTATCAAATGGGTCATTCTTAAATTTGAAGAAACATGGAACAACACATGTGGGTCATCGTGCATTTAGGTCTATGACTAGATGTAACCATGACAATGATTTGGTTGTTGCAAATAATGGCAAGAAGAAGAAGAACAAAACTAGCGTGTCTGAAGAAGAAGTTATGACCATTTTGAAGTCTATTTCAGATCCAAATTCTGCTTTTTCATACTTTAAGATAGTTTCTCAGTTGACTAATTTTGTGCATACCACTGATGCATGCAATTACATGCTAGATATTTTGAGAGAACAAAGGAGAATTGAGGATATGGTTTTTGTGTTTGATTTGATGCAAAAGAAAGTTATTTACAGGAATTTGACTACATACATGACTATTTTCAAGGCTCTTTCGATTAAAGGCGGGATTGGAAGAGCGCCTTTTGCGCTTAGAAAGATGAGGGAAGTTGGGTTTATTTTGAATGCATATTCATATAATGGGTTGATTCATTTACTGTTACCTGGTTTTTGTAACGAGGCTTTGAAGGTTTACAAAAGAATGATCTCAGAAGGGTTGAAGCCTAGCATGAAGACATACTCGGCGTTAATGGTTGCATTTGGAAGGAGAAGGGACACCGGGAACATTATGAATTTGTTGGAAGAAATGAAGAGTATTGGTTTGAGGCCGAATATTTACACGTATACAATATGTATTAGAGCGCTTGGGAGGGCGGGGAGAATTGACAATGCGTGGGGGATTTTCAAGGAAATGGACGATGAAGGATGTGGGCCTGATGTTATCACTTATACGGTTCTGATCGATGCTCTTTGTGCTGCAGGAAAACTTGACAAGGCTGAGGAATTATATGTAAAGATGAGAGCTAGTAGTCACAGTCCGGATCGTGTAACATACATTACATTGATGGACAAGTTTGGTAAAGTTGGGGACTTGGAAACAGTGAAAAGATTCTGGAATGAGATGGAGGTAGATGGTTATGCTCCCGATGTTGTTACCTACACTATACTTATTGAGGCTTTATGCAAATCCGGGGATGTTGATCGGGCGTTTGATATGTTAAACGTGATGACAACGAAAGGCATTTTTCCAAATCTTCATACTTATAACACATTGATCTGTGGACTTTTGAAGGCAAGAAGATTGGATGAGGCATTAGAACTTCTTGAAAATATGGAATCTTCGGGCGTTAAACCAACCGCTTTTTCTTATGTTCTTTTCATTGATTATTATGGAAAATCTGGTGATCCTGCAAAAGCTATTGACACCTTTGAAACAATGAAAAAGAGAGGAATTATGCCTAGCATAGCAGCGTGTAATGCGTCTTTATATACTCTTGCAGAGACGGGTAGGATCAGTGAAGCTGAAGATATATTCAATGATCTTCACAAGTGTGGCCTTTCGCCGGATTCAGTAACCTATAACATGTTGATGAAGTGCTATAGCAAAGCGGGGCAAATAGACAAAGCCACACAACTTTTGTCTGAGATGATAAGCAAGGGGTGTGAACCAGATGTAATGATAATCAATTCTTTAATCGACACACTTTACAAAGCTGGCCGAGTTGATGCGGCGTGGAAGATGTTTGGGAGACTGAAGAATTTGAAGCTAGCTCCTACGGTTGTGACATACAACATTTTACTTACTGGTCTCGGGAAAGAGGGAAAAATCCTGAAGGCCCTTGAATTATTTGGGAGTATGACAGAGTCTGGATGCCCTCCAAATACAATAACTTTTAACTCGCTCCTCGATTGTCTTTCCAAGAATGATGCAGTTGATTTGGCTTTGAAGATGTTTTGTAGAATGACAATGATGAACTGTAATCCTGATGTTCTGACATACAACACTATCATCTATGGTTTAATAAGAGAAGGAAGAATTGATTACGCGTTCTGGTTTTTCCATCAGATGAAGAAATTTCTTTCGCCTGATTATGTAACTTTGTGCACACTCATTCCCGGTGTTGTAAGGCATGGAAGGGTTGAGGATGCAATCAAGGTTGTAATGGAATTTGTACACCAGGCAGGTTTACAGACAAATTCACAATTCTGGGGTGAACTAATAGAATGTATTTTAACCGAAGCAGAAATTGAAGAAGCCATTTCATTTGCTGAAATATTGGTATGCAATTCTGTTTGCCAAGATGATCATGTAATGTTACCTCTAATTAAAGTCCTGTGCAAGCGGAAAAAGGCCCTCGATGCTCAAAATGTATTTGACAAATTCACCAAAAACTTGGGAATTCACCCAACCCTAGAATCATACAATTGCCTGATGGATGGACTTCTTGGATCTAATTTCACTGAGAAGGCTCTAGAACTTTTTGAGGATATGAAGAGTGCAGGTACTCATCCTAACAATTTTACTTACAATTTGTTGCTTGATGCTCACGGTAAATCCAAGAGGATCAATGAACTTTATGATCTGTACAGTGAGATGCGTTCTAGAGGATGCGAGCCAAATGCTATAAGCCATAACATTATCATCTCCGCGCTTGTGAAATCTAATAATTTGAATAAAGCTTTGGATTTATATTATGAACTCATGAGTGGTGATTTCTCTCCCACTCCTTGTACATATGGTCCTCTTATAGATGGTCTTTTAAAAGCTGGAAGATCCGAGCAAGCAATGAAAATTTTCGAGGAGATGTTAGATTATGGATGCCAGCCCAACAGTGTTATTTACAATATTCTTATCAACGGATTCGGGAAATCAG

Protein sequence

>MS.gene32705.t1

MVLLLCSSTTTCCNNDILREQRRIEDMVFVFDLMQKKVIYRNLTTYMTIFKALSIKGGIGRAPFALRKMREVGFILNAYSYNGLIHLLLPGFCNEALKVYKRMISEGLKPSMKTYSALMVAFGRRRDTGNIMNLLEEMKSIGLRPNIYTYTICIRALGRAGRIDNAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAEELYVKMRASSHSPDRRGIMPSIAACNASLYTLAETGRISEAEDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPDVMIINSLIDTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLGKEGKILKALELFGSMTESGCPPNTITFNSLLDCLSKNDAVDLALKMFCRMTMMNCNPDVLTYNTIIYGLIREGRIDYAFWFFHQMKKFLSPDYVTLCTLIPGVVRHGRVEDAIKVVMEFVHQAGLQTNSQFWGELIECILTEAEIEEAISFAEILVCNSVCQDDHVMLPLIKVLCKRKKALDAQNVFDKFTKNLGIHPTLESYNCLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLLLDAHGKSKRINELYDLYSEMRSRGCEPNAISHNIIISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCQPNSVIYNILINGFGKS