AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0202740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0202740 MtrunA17_Chr2g0299981 95.082 549 22 3 1 548 1 545 0.0 1045
Msa0202740 MtrunA17_Chr4g0070871 57.394 568 167 10 1 548 1 513 0.0 593
Msa0202740 MtrunA17_Chr1g0150781 44.792 576 267 14 1 548 1 553 3.40e-150 442
Msa0202740 MtrunA17_Chr3g0135961 44.041 579 263 15 1 548 1 549 7.95e-148 436
Msa0202740 MtrunA17_Chr8g0389921 45.732 328 133 7 224 543 149 439 4.11e-87 276
Msa0202740 MtrunA17_Chr3g0112291 42.398 342 148 8 211 543 80 381 1.08e-79 255
Msa0202740 MtrunA17_Chr5g0396731 44.340 318 140 7 221 538 70 350 3.68e-72 234
Msa0202740 MtrunA17_Chr1g0158781 44.444 324 123 9 222 540 110 381 1.17e-67 223
Msa0202740 MtrunA17_Chr5g0435721 45.385 260 109 3 221 480 190 416 5.23e-66 222
Msa0202740 MtrunA17_Chr1g0150451 33.746 323 139 8 224 543 78 328 4.80e-44 159
Msa0202740 MtrunA17_Chr3g0136711 31.283 374 155 9 166 536 4 278 8.06e-44 157
Msa0202740 MtrunA17_Chr1g0212961 35.144 313 130 9 224 536 96 335 1.17e-42 155
Msa0202740 MtrunA17_Chr3g0126511 32.500 320 145 6 225 543 96 345 9.22e-39 145
Msa0202740 MtrunA17_Chr5g0430481 32.258 310 144 8 231 539 131 375 4.62e-37 141
Msa0202740 MtrunA17_Chr3g0105351 33.212 274 127 7 270 539 94 315 8.88e-36 136
Msa0202740 MtrunA17_Chr4g0050381 34.557 327 137 12 219 540 24 278 1.53e-35 134
Msa0202740 MtrunA17_Chr3g0105371 32.847 274 128 6 270 539 118 339 1.03e-34 134
Msa0202740 MtrunA17_Chr1g0150071 33.333 291 148 9 224 489 24 293 9.23e-34 131
Msa0202740 MtrunA17_Chr3g0136811 30.435 345 181 10 224 543 24 334 1.66e-32 128
Msa0202740 MtrunA17_Chr4g0001761 32.845 341 169 13 224 539 24 329 1.92e-32 128
Msa0202740 MtrunA17_Chr3g0115851 32.812 320 139 10 224 539 35 282 3.35e-31 122
Msa0202740 MtrunA17_Chr2g0279151 34.259 324 134 12 222 539 31 281 2.62e-29 117
Msa0202740 MtrunA17_Chr4g0065141 30.450 289 135 9 265 541 119 353 1.61e-28 117
Msa0202740 MtrunA17_Chr5g0426141 33.231 325 131 12 224 539 35 282 2.44e-28 114
Msa0202740 MtrunA17_Chr3g0138281 29.154 319 160 10 230 541 89 348 8.25e-28 115
Msa0202740 MtrunA17_Chr8g0360351 30.725 345 160 13 199 536 7 279 7.76e-27 110
Msa0202740 MtrunA17_Chr4g0051661 32.593 270 122 8 270 536 183 395 3.42e-26 110
Msa0202740 MtrunA17_Chr5g0407161 30.769 273 130 9 270 536 124 343 3.99e-26 110
Msa0202740 MtrunA17_Chr2g0317021 32.416 327 145 13 217 539 79 333 4.27e-26 109
Msa0202740 MtrunA17_Chr1g0194191 30.935 278 141 10 270 540 118 351 5.35e-26 110
Msa0202740 MtrunA17_Chr1g0171571 28.889 360 184 13 192 539 346 645 1.62e-25 110
Msa0202740 MtrunA17_Chr3g0144111 30.292 274 109 9 270 536 27 225 2.61e-24 102
Msa0202740 MtrunA17_Chr2g0293811 29.856 278 144 11 270 540 100 333 2.76e-24 104
Msa0202740 MtrunA17_Chr3g0127091 26.776 366 174 13 208 538 43 349 2.79e-22 99.0
Msa0202740 MtrunA17_Chr6g0483411 27.692 325 162 11 231 539 52 319 2.32e-21 95.1
Msa0202740 MtrunA17_Chr7g0243571 29.811 265 127 10 251 478 77 319 3.03e-19 90.5
Msa0202740 MtrunA17_Chr1g0185141 25.964 389 189 15 231 540 72 440 9.62e-19 90.5
Msa0202740 MtrunA17_Chr3g0089721 28.618 304 161 8 268 538 66 346 2.45e-18 87.0
Msa0202740 MtrunA17_Chr4g0067711 32.203 236 116 9 270 479 91 308 6.34e-18 85.5
Msa0202740 MtrunA17_Chr7g0256771 29.845 258 123 9 255 479 55 287 8.16e-18 84.7
Msa0202740 MtrunA17_Chr3g0089711 28.289 304 162 8 268 538 66 346 1.29e-17 84.7
Msa0202740 MtrunA17_Chr7g0250061 27.309 249 121 8 270 484 76 298 2.61e-17 84.0
Msa0202740 MtrunA17_Chr1g0209451 27.848 316 156 10 234 538 43 297 2.63e-17 84.3
Msa0202740 MtrunA17_Chr7g0225501 31.651 218 114 8 271 477 87 280 4.50e-17 84.0
Msa0202740 MtrunA17_Chr1g0151781 28.936 235 124 7 270 479 68 284 1.58e-16 81.3
Msa0202740 MtrunA17_Chr7g0221691 30.705 241 130 8 270 478 129 364 3.02e-16 81.3
Msa0202740 MtrunA17_Chr8g0371321 27.530 247 123 7 270 484 79 301 4.09e-16 80.5
Msa0202740 MtrunA17_Chr1g0211251 26.908 249 122 8 270 484 81 303 5.36e-16 80.1
Msa0202740 MtrunA17_Chr7g0256751 27.907 258 132 8 255 481 54 288 7.35e-16 80.1
Msa0202740 MtrunA17_Chr7g0249421 30.364 247 137 8 270 481 96 342 2.05e-15 79.0
Msa0202740 MtrunA17_Chr1g0213351 27.530 247 123 7 270 484 80 302 2.73e-15 77.8
Msa0202740 MtrunA17_Chr7g0263281 26.639 244 123 7 270 481 71 290 3.03e-15 77.4
Msa0202740 MtrunA17_Chr7g0272061 31.064 235 133 8 270 481 91 319 8.98e-15 76.3
Msa0202740 MtrunA17_Chr7g0271971 26.019 319 164 8 231 538 40 297 8.24e-14 73.6
Msa0202740 MtrunA17_Chr4g0063111 26.364 330 168 13 251 541 56 349 8.95e-14 73.9
Msa0202740 MtrunA17_Chr1g0192421 28.992 238 125 7 270 481 89 308 2.98e-13 71.2
Msa0202740 MtrunA17_Chr4g0004971 28.689 244 126 10 264 478 74 298 3.15e-13 71.2
Msa0202740 MtrunA17_Chr1g0192471 25.857 321 162 10 231 538 40 297 1.39e-12 69.7
Msa0202740 MtrunA17_Chr2g0294291 25.794 252 130 8 267 485 72 299 1.44e-12 69.3
Msa0202740 MtrunA17_Chr3g0133801 24.348 345 175 12 228 543 13 300 2.36e-12 68.9
Msa0202740 MtrunA17_Chr7g0238501 23.762 303 184 9 270 541 263 549 4.59e-12 68.6
Msa0202740 MtrunA17_Chr3g0089691 31.280 211 112 6 361 538 50 260 9.80e-12 66.2
Msa0202740 MtrunA17_Chr1g0153671 25.965 285 148 9 271 543 66 299 2.01e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0202740 AT4G26080.1 55.014 349 126 5 204 547 109 431 1.02e-128 383
Msa0202740 AT1G72770.4 55.490 337 137 6 217 548 183 511 1.12e-126 380
Msa0202740 AT1G72770.1 55.490 337 137 6 217 548 183 511 1.12e-126 380
Msa0202740 AT1G72770.3 55.490 337 137 6 217 548 183 511 1.12e-126 380
Msa0202740 AT1G17550.1 55.490 337 138 5 217 548 182 511 1.87e-126 380
Msa0202740 AT1G17550.2 55.490 337 138 5 217 548 182 511 1.87e-126 380
Msa0202740 AT5G57050.1 54.913 346 130 4 208 548 97 421 3.61e-126 376
Msa0202740 AT5G57050.2 55.202 346 129 5 208 548 57 381 4.71e-126 374
Msa0202740 AT2G29380.1 43.731 327 151 8 213 539 68 361 1.57e-79 254
Msa0202740 AT5G51760.2 43.068 339 157 8 217 543 72 386 3.63e-76 246
Msa0202740 AT5G51760.1 42.241 348 147 9 217 543 102 416 7.56e-76 246
Msa0202740 AT1G07430.1 39.691 388 167 10 184 543 90 438 3.21e-75 245
Msa0202740 AT3G11410.1 47.080 274 109 6 218 484 99 343 1.06e-74 243
Msa0202740 AT5G57050.3 51.542 227 87 4 216 441 105 309 1.34e-71 231
Msa0202740 AT1G72770.2 52.655 226 95 5 217 437 183 401 1.06e-69 230
Msa0202740 AT1G72770.5 52.655 226 95 5 217 437 183 401 1.06e-69 230
Msa0202740 AT5G59220.1 45.660 265 111 5 222 484 110 343 3.92e-68 226
Msa0202740 AT5G59220.2 43.119 218 91 5 222 437 110 296 7.88e-48 169
Msa0202740 AT5G24940.1 37.984 258 111 7 224 480 34 243 3.04e-43 160
Msa0202740 AT1G43900.1 33.438 320 135 7 224 539 124 369 4.89e-43 157
Msa0202740 AT4G31750.1 32.803 314 140 7 224 536 34 277 6.06e-43 155
Msa0202740 AT4G31750.3 32.803 314 140 7 224 536 34 277 6.06e-43 155
Msa0202740 AT4G31750.2 32.803 314 140 7 224 536 34 277 6.94e-43 155
Msa0202740 AT5G10740.1 34.700 317 130 10 224 536 34 277 7.36e-43 157
Msa0202740 AT5G10740.2 34.700 317 130 10 224 536 34 277 7.36e-43 157
Msa0202740 AT5G53140.1 32.595 316 142 8 225 539 103 348 1.36e-40 152
Msa0202740 AT5G53140.2 32.595 316 142 8 225 539 103 348 1.36e-40 152
Msa0202740 AT1G67820.2 30.811 370 151 10 224 538 85 404 1.94e-39 149
Msa0202740 AT1G67820.1 30.811 370 151 10 224 538 121 440 4.07e-39 149
Msa0202740 AT2G30020.1 33.754 317 139 8 231 544 147 395 1.35e-38 146
Msa0202740 AT2G40180.1 33.125 320 149 11 225 539 127 386 1.22e-37 143
Msa0202740 AT1G07160.1 35.662 272 124 6 270 538 153 376 4.98e-36 139
Msa0202740 AT4G31860.3 33.910 289 145 10 224 487 24 291 1.71e-31 124
Msa0202740 AT4G31860.1 31.672 341 174 12 224 539 24 330 1.75e-31 125
Msa0202740 AT2G25620.1 29.721 323 157 9 230 541 96 359 5.26e-31 125
Msa0202740 AT2G25620.2 29.721 323 157 9 230 541 96 359 5.26e-31 125
Msa0202740 AT1G34750.2 32.565 347 151 15 200 539 12 282 5.36e-31 122
Msa0202740 AT1G34750.1 32.565 347 151 15 200 539 12 282 5.36e-31 122
Msa0202740 AT1G34750.3 32.565 347 151 15 200 539 12 282 5.36e-31 122
Msa0202740 AT1G22280.3 31.562 320 149 12 224 539 34 287 4.47e-30 119
Msa0202740 AT2G25070.1 30.172 348 178 13 224 546 24 331 6.54e-30 120
Msa0202740 AT2G25070.2 30.172 348 178 13 224 546 24 331 6.54e-30 120
Msa0202740 AT1G78200.1 30.650 323 145 9 224 539 33 283 1.58e-29 118
Msa0202740 AT1G78200.3 30.650 323 145 9 224 539 33 283 1.58e-29 118
Msa0202740 AT1G78200.2 30.650 323 145 9 224 539 33 283 1.58e-29 118
Msa0202740 AT1G78200.5 31.522 276 127 7 270 539 19 238 9.67e-29 114
Msa0202740 AT1G78200.4 31.522 276 127 7 270 539 19 238 9.67e-29 114
Msa0202740 AT1G22280.1 31.875 320 142 12 224 539 34 281 1.14e-28 115
Msa0202740 AT1G48040.1 33.212 274 134 8 270 536 116 347 2.01e-28 117
Msa0202740 AT3G51470.1 29.487 312 148 10 231 536 80 325 2.17e-28 116
Msa0202740 AT3G51470.2 29.487 312 148 10 231 536 36 281 2.53e-28 115
Msa0202740 AT4G31860.2 34.432 273 133 10 224 471 24 275 7.57e-28 113
Msa0202740 AT3G15260.2 30.625 320 146 11 224 539 42 289 8.69e-28 113
Msa0202740 AT3G15260.1 30.625 320 146 11 224 539 42 289 8.69e-28 113
Msa0202740 AT2G34740.1 31.834 289 133 10 255 536 101 332 1.44e-27 114
Msa0202740 AT2G33700.1 29.969 327 152 11 222 536 81 342 1.90e-27 114
Msa0202740 AT4G28400.3 32.414 290 134 10 255 538 27 260 2.03e-27 111
Msa0202740 AT2G40860.4 31.132 318 154 11 225 539 296 551 2.43e-27 116
Msa0202740 AT2G40860.1 31.132 318 154 11 225 539 394 649 3.51e-27 116
Msa0202740 AT3G17250.1 29.603 277 142 7 270 536 158 391 3.52e-27 114
Msa0202740 AT4G28400.1 32.414 290 134 10 255 538 49 282 4.43e-27 111
Msa0202740 AT3G62260.3 30.037 273 143 8 270 536 27 257 1.00e-26 110
Msa0202740 AT3G62260.2 30.037 273 143 8 270 536 117 347 1.48e-26 112
Msa0202740 AT3G62260.1 30.037 273 143 8 270 536 116 346 1.53e-26 112
Msa0202740 AT2G20630.1 33.051 236 118 7 255 484 45 246 9.19e-26 107
Msa0202740 AT1G34750.4 32.069 290 134 13 200 482 12 245 1.54e-25 105
Msa0202740 AT2G20630.2 33.051 236 118 7 255 484 45 246 2.86e-25 106
Msa0202740 AT2G40860.2 31.955 266 137 9 225 487 394 618 4.59e-25 110
Msa0202740 AT2G34740.2 33.043 230 112 9 255 477 115 309 2.67e-23 101
Msa0202740 AT2G34740.3 33.043 230 112 9 255 477 97 291 2.88e-23 100
Msa0202740 AT4G08260.1 29.927 274 110 6 271 544 20 211 1.30e-22 96.7
Msa0202740 AT3G16800.2 33.898 236 116 9 270 484 93 309 3.56e-22 98.6
Msa0202740 AT3G16800.1 33.898 236 116 9 270 484 93 309 3.56e-22 98.6
Msa0202740 AT3G16800.3 33.898 236 116 9 270 484 93 309 3.56e-22 98.6
Msa0202740 AT4G28400.2 32.000 225 113 7 255 473 49 239 5.74e-22 95.9
Msa0202740 AT3G16800.4 33.906 233 114 9 273 484 1 214 6.21e-22 95.9
Msa0202740 AT3G16800.6 33.906 233 114 9 273 484 1 214 6.21e-22 95.9
Msa0202740 AT3G63320.1 26.836 354 183 12 246 540 46 382 1.07e-21 98.2
Msa0202740 AT3G63320.2 30.973 226 98 7 362 540 85 299 4.74e-21 95.5
Msa0202740 AT4G27800.1 28.219 365 161 15 221 543 56 361 2.59e-20 93.6
Msa0202740 AT1G18030.1 28.135 327 158 15 231 539 82 349 6.34e-20 92.0
Msa0202740 AT3G63340.12 31.416 226 97 8 362 540 233 447 7.87e-20 93.2
Msa0202740 AT3G63340.11 31.416 226 97 8 362 540 233 447 2.17e-19 92.8
Msa0202740 AT3G63340.6 31.416 226 97 8 362 540 233 447 2.56e-19 92.8
Msa0202740 AT3G63340.3 31.416 226 97 8 362 540 233 447 2.56e-19 92.8
Msa0202740 AT3G63340.10 31.416 226 97 8 362 540 233 447 2.56e-19 92.8
Msa0202740 AT3G63340.4 31.416 226 97 8 362 540 233 447 2.56e-19 92.8
Msa0202740 AT3G63340.8 31.416 226 97 8 362 540 233 447 2.86e-19 92.4
Msa0202740 AT3G63340.5 31.416 226 97 8 362 540 233 447 3.06e-19 92.4
Msa0202740 AT3G63340.1 31.416 226 97 8 362 540 233 447 3.06e-19 92.4
Msa0202740 AT3G63340.7 31.416 226 97 8 362 540 233 447 3.23e-19 92.4
Msa0202740 AT1G68410.4 28.869 336 164 12 222 545 37 309 7.26e-19 89.7
Msa0202740 AT1G68410.3 28.869 336 164 12 222 545 37 309 7.26e-19 89.7
Msa0202740 AT1G68410.1 28.869 336 164 12 222 545 37 309 7.26e-19 89.7
Msa0202740 AT1G68410.2 28.869 336 164 12 222 545 37 309 7.26e-19 89.7
Msa0202740 AT5G01700.1 32.018 228 123 9 270 478 29 243 1.87e-18 87.0
Msa0202740 AT5G01700.2 32.018 228 123 9 270 478 78 292 2.49e-18 87.4
Msa0202740 AT3G17090.2 31.557 244 111 10 270 481 84 303 3.23e-18 86.3
Msa0202740 AT3G17090.1 31.557 244 111 10 270 481 84 303 3.82e-18 87.0
Msa0202740 AT3G27140.1 27.798 277 101 4 270 546 19 196 1.78e-17 82.8
Msa0202740 AT2G40860.3 30.453 243 125 9 225 464 394 595 2.63e-17 85.9
Msa0202740 AT5G02760.1 27.686 242 121 7 270 481 72 289 7.62e-17 82.8
Msa0202740 AT4G38520.2 27.459 244 121 7 270 481 81 300 1.12e-16 82.8
Msa0202740 AT4G38520.1 27.459 244 121 7 270 481 81 300 1.12e-16 82.8
Msa0202740 AT1G18030.2 28.736 261 126 13 231 473 82 300 1.21e-16 81.3
Msa0202740 AT1G09160.2 26.814 317 158 9 234 538 43 297 1.34e-16 82.8
Msa0202740 AT1G09160.1 26.814 317 158 9 234 538 43 297 1.34e-16 82.8
Msa0202740 AT3G63340.2 37.584 149 78 6 396 540 343 480 2.03e-16 83.6
Msa0202740 AT4G27800.3 28.239 301 141 12 221 487 56 315 2.44e-16 80.9
Msa0202740 AT3G51370.1 27.530 247 123 8 270 484 79 301 2.94e-16 81.3
Msa0202740 AT3G51370.3 27.530 247 123 8 270 484 79 301 2.94e-16 81.3
Msa0202740 AT4G27800.2 28.239 301 141 12 221 487 56 315 3.07e-16 80.5
Msa0202740 AT2G05050.1 39.370 127 58 2 418 544 85 192 4.01e-16 77.4
Msa0202740 AT5G26010.1 28.912 294 148 12 272 543 75 329 5.65e-16 79.7
Msa0202740 AT3G12620.2 28.226 248 118 9 268 481 81 302 9.68e-16 79.7
Msa0202740 AT3G12620.1 28.226 248 118 9 268 481 81 302 9.68e-16 79.7
Msa0202740 AT4G32950.1 31.760 233 112 11 272 485 74 278 3.73e-15 77.0
Msa0202740 AT1G17545.1 64.583 48 17 0 354 401 131 178 1.06e-14 72.8
Msa0202740 AT5G27930.1 29.151 271 133 9 270 499 92 344 1.27e-14 76.3
Msa0202740 AT5G27930.2 29.151 271 133 9 270 499 92 344 1.27e-14 76.3
Msa0202740 AT1G47380.1 28.014 282 136 10 271 538 65 293 1.49e-14 76.3
Msa0202740 AT4G33920.1 26.433 314 158 12 266 538 57 338 4.48e-14 74.7
Msa0202740 AT3G06270.1 24.047 341 159 10 234 539 68 343 5.13e-14 73.9
Msa0202740 AT5G36250.1 29.719 249 142 8 270 485 98 346 5.31e-14 74.7
Msa0202740 AT3G05640.2 34.545 165 78 5 362 496 172 336 5.97e-14 73.9
Msa0202740 AT3G05640.1 34.545 165 78 5 362 496 172 336 5.97e-14 73.9
Msa0202740 AT3G05640.3 34.545 165 78 5 362 496 172 336 5.97e-14 73.9
Msa0202740 AT1G79630.2 34.000 150 83 3 349 482 139 288 1.04e-13 73.9
Msa0202740 AT1G79630.7 34.000 150 83 3 349 482 139 288 1.04e-13 73.9
Msa0202740 AT4G03415.1 25.461 271 139 8 251 481 83 330 1.15e-13 73.9
Msa0202740 AT4G03415.3 25.461 271 139 8 251 481 83 330 1.15e-13 73.9
Msa0202740 AT4G03415.2 25.461 271 139 8 251 481 83 330 1.15e-13 73.9
Msa0202740 AT3G02750.2 36.842 133 68 4 362 478 216 348 1.18e-13 73.9
Msa0202740 AT3G02750.1 36.842 133 68 4 362 478 216 348 1.18e-13 73.9
Msa0202740 AT1G79630.6 34.000 150 83 3 349 482 99 248 1.57e-13 72.8
Msa0202740 AT1G79630.3 34.000 150 83 3 349 482 99 248 1.57e-13 72.8
Msa0202740 AT1G79630.4 34.000 150 83 3 349 482 99 248 1.57e-13 72.8
Msa0202740 AT1G79630.5 34.000 150 83 3 349 482 99 248 1.57e-13 72.8
Msa0202740 AT3G55050.1 28.226 248 118 10 268 481 82 303 1.66e-13 72.8
Msa0202740 AT3G55050.2 28.226 248 118 10 268 481 82 303 1.66e-13 72.8
Msa0202740 AT1G79630.8 34.000 150 83 3 349 482 205 354 1.68e-13 73.6
Msa0202740 AT1G79630.1 34.000 150 83 3 349 482 209 358 1.68e-13 73.6
Msa0202740 AT1G16220.1 26.556 241 149 7 270 482 95 335 1.25e-12 70.5
Msa0202740 AT3G51370.2 31.847 157 75 4 360 484 60 216 6.71e-12 67.0
Msa0202740 AT5G36250.2 28.137 263 142 9 270 485 98 360 6.65e-11 65.1

Find 104 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTAGCCAGTGATGGTTTA+TGG 0.134314 2_1:+25348471 Msa0202740:CDS
CTCGAAAGCGAATCCTTATT+TGG 0.180664 2_1:+25348528 Msa0202740:CDS
CGTTCTTCTTATGCCAAATA+AGG 0.198782 2_1:-25348541 None:intergenic
ATTAAATTCCCAATTGAAAA+TGG 0.220143 2_1:-25346131 None:intergenic
TACTAAAGTTTGCAGTTTAC+AGG 0.248762 2_1:+25348850 Msa0202740:three_prime_UTR
AAGATGTTTCTGACAGTAAT+TGG 0.260229 2_1:-25347253 None:intergenic
TAGAAAGAAAAGAAAACTTA+TGG 0.299763 2_1:+25346082 Msa0202740:exon
TACGGTTTCTCGTCAGTTAT+TGG 0.301763 2_1:+25346770 Msa0202740:CDS
TGAACTGTCTCTGAGCCTTC+AGG 0.318814 2_1:-25348691 None:intergenic
GAAACATCTTCACTCAGTTT+TGG 0.322918 2_1:+25347266 Msa0202740:CDS
AACCATCACTGGCTAGAATA+AGG 0.337387 2_1:-25348466 None:intergenic
ATACCGAGTTCTTGGTGTTT+TGG 0.342014 2_1:+25347759 Msa0202740:CDS
TCTAGCCAGTGATGGTTTAT+GGG 0.352985 2_1:+25348472 Msa0202740:CDS
AACAAGCTGTGATAATGATT+TGG 0.360848 2_1:+25346727 Msa0202740:CDS
CGGAGGACAAACTTGACTTC+TGG 0.365898 2_1:-25348425 None:intergenic
TTAAATCCTGCTTCAATTGA+GGG 0.383487 2_1:+25346233 Msa0202740:CDS
AAAGTAGATGATGTGATTGT+AGG 0.390379 2_1:+25347384 Msa0202740:CDS
ACAAATCACATGGAAATAAC+TGG 0.402753 2_1:+25346173 Msa0202740:CDS
AGTACCTTCAATGATGCTAA+TGG 0.405671 2_1:+25346844 Msa0202740:CDS
TCCCACTCATCCTCTCTATT+AGG 0.409417 2_1:-25347694 None:intergenic
TCATCAACCGTGACAGTATT+CGG 0.411811 2_1:-25346548 None:intergenic
TTTGATTTGGGAAGATCCTC+AGG 0.414540 2_1:-25348900 None:intergenic
GACGGAACCAATGTATCAAC+CGG 0.415967 2_1:+25348563 Msa0202740:CDS
GGATCAAGTTGCAGCTGAAC+CGG 0.426256 2_1:+25346349 Msa0202740:CDS
ATTAAATCCTGCTTCAATTG+AGG 0.426529 2_1:+25346232 Msa0202740:CDS
TGGAACGGATACCGAGTTCT+TGG 0.427524 2_1:+25347751 Msa0202740:CDS
TTATAGGATTCTAGAGGATA+AGG 0.428239 2_1:+25346052 Msa0202740:five_prime_UTR
AATATCGAGGATGATAAGTA+TGG 0.431471 2_1:+25346572 Msa0202740:CDS
TGGTGAGTACTTTCTTCCAT+TGG 0.438925 2_1:-25347350 None:intergenic
AGCTGAACCGGCCTCAGAAA+TGG 0.445690 2_1:+25346361 Msa0202740:CDS
ATCAACTCCTTGGTCTTGCC+CGG 0.446950 2_1:-25348582 None:intergenic
CACAATTCGCAACTATTATG+TGG 0.447411 2_1:-25347524 None:intergenic
GTCTTGCCCGGTTGATACAT+TGG 0.451879 2_1:-25348570 None:intergenic
TTCTTTCCAACATTAGCTTC+AGG 0.460728 2_1:-25347411 None:intergenic
ACAAACTTGACTTCTGGATC+TGG 0.466720 2_1:-25348419 None:intergenic
TATTGGAAGGAGACAAGAAA+TGG 0.466926 2_1:+25346787 Msa0202740:CDS
GCAGTTGATCCAACAGTCTC+AGG 0.467835 2_1:-25347477 None:intergenic
ATCTCATGAACCGCAGCAAT+CGG 0.469960 2_1:-25346683 None:intergenic
ACAAATATCAGTGTCTTTCG+AGG 0.475014 2_1:+25346319 Msa0202740:CDS
GATGGACTTCAGACATTGGC+AGG 0.485060 2_1:-25349078 None:intergenic
CTAGTATATTTATTTAGCCC+TGG 0.495734 2_1:+25348797 Msa0202740:three_prime_UTR
TTTGCTGTCTATGATGGACA+TGG 0.497731 2_1:+25346911 Msa0202740:CDS
TCTGGATCTGGAATTATCCA+TGG 0.502540 2_1:-25348407 None:intergenic
AGTTATTGTTATTGACCTGA+AGG 0.513508 2_1:+25348676 Msa0202740:CDS
TGCCTTATTCTAGCCAGTGA+TGG 0.520110 2_1:+25348464 Msa0202740:CDS
CTCAGGAGCAAGAGTTTCCT+CGG 0.523415 2_1:-25347460 None:intergenic
CACATCCCATAAACCATCAC+TGG 0.524834 2_1:-25348477 None:intergenic
ACTCTTGCTCCTGAGACTGT+TGG 0.528725 2_1:+25347468 Msa0202740:CDS
TTGGCAGTGTCGAGATCCAT+AGG 0.528768 2_1:+25347778 Msa0202740:CDS
CACATAATAGTTGCGAATTG+TGG 0.532195 2_1:+25347525 Msa0202740:CDS
TCTGCGGCATAATGAGCTGC+AGG 0.533192 2_1:-25348605 None:intergenic
GAGCTGCAGGATCAACTCCT+TGG 0.534092 2_1:-25348592 None:intergenic
TCAAGAACCATTTCTGAGGC+CGG 0.534612 2_1:-25346368 None:intergenic
GGAGTTCCTGAAGCTAATGT+TGG 0.540614 2_1:+25347405 Msa0202740:CDS
AAGACAATTGGCAAGACCAA+TGG 0.541489 2_1:+25347334 Msa0202740:CDS
TTGCTGTCTATGATGGACAT+GGG 0.542095 2_1:+25346912 Msa0202740:CDS
ACTAAAGTTTGCAGTTTACA+GGG 0.553055 2_1:+25348851 Msa0202740:three_prime_UTR
CTGTTTGCAGCCTAATAGAG+AGG 0.555547 2_1:+25347684 Msa0202740:intron
GGATAGAAGCTGCAGGAGGA+AGG 0.556808 2_1:+25347719 Msa0202740:CDS
GTTTCTCGTCAGTTATTGGA+AGG 0.557259 2_1:+25346774 Msa0202740:CDS
TCATCCATTAGCATCATTGA+AGG 0.561946 2_1:-25346848 None:intergenic
AAAACATATACCGTTACAGA+TGG 0.563022 2_1:-25349096 None:intergenic
GTGATAAATACTTGAAACCA+TGG 0.570632 2_1:+25348390 Msa0202740:CDS
GTTGGAAAGAACGGTAATGA+CGG 0.571896 2_1:+25347423 Msa0202740:CDS
GGATACCTCAGTTTAAGATA+AGG 0.573422 2_1:+25348872 Msa0202740:three_prime_UTR
GACTGTTGGATCAACTGCAC+TGG 0.576326 2_1:+25347482 Msa0202740:CDS
CTGCCAAAACACCAAGAACT+CGG 0.579215 2_1:-25347762 None:intergenic
TGGGAAAGGATAGAAGCTGC+AGG 0.580421 2_1:+25347712 Msa0202740:CDS
TATGGAGGAAATAAGTTCGA+CGG 0.581142 2_1:+25346100 Msa0202740:exon
TTGAGTAATACTCCTCTCTA+CGG 0.583420 2_1:+25346752 Msa0202740:CDS
GAAGCTAATGTTGGAAAGAA+CGG 0.583497 2_1:+25347414 Msa0202740:CDS
TGACAACCCTCAATTGAAGC+AGG 0.583524 2_1:-25346239 None:intergenic
AAAGAAAAGAAAACTTATGG+AGG 0.585164 2_1:+25346085 Msa0202740:exon
ATAGAGAGGATGAGTGGGAA+AGG 0.585514 2_1:+25347698 Msa0202740:CDS
TGCTGTCTATGATGGACATG+GGG 0.588722 2_1:+25346913 Msa0202740:CDS
GCCTAATAGAGAGGATGAGT+GGG 0.605556 2_1:+25347693 Msa0202740:intron
TACAGATGGACTTCAGACAT+TGG 0.612317 2_1:-25349082 None:intergenic
ACTGATATTTGTTGATGTTG+CGG 0.614674 2_1:-25346308 None:intergenic
TCAAGAGCGGTCTTGTGTCG+AGG 0.616228 2_1:+25347552 Msa0202740:CDS
AGCCTAATAGAGAGGATGAG+TGG 0.617555 2_1:+25347692 Msa0202740:intron
TCTGTTGGAAGTGGTGAAGA+CGG 0.623681 2_1:+25346269 Msa0202740:CDS
GAAGATAGAAGCATCTCAGA+TGG 0.623729 2_1:+25346647 Msa0202740:CDS
TGAGGAGTTCAAGACAGCTA+AGG 0.625755 2_1:+25346415 Msa0202740:CDS
GTATCAACCGGGCAAGACCA+AGG 0.626468 2_1:+25348575 Msa0202740:CDS
TGTCTGAAGTCCATCTGTAA+CGG 0.626563 2_1:+25349086 Msa0202740:three_prime_UTR
ACTTTCAAGAACCATTTCTG+AGG 0.627956 2_1:-25346372 None:intergenic
GAATGAGCTAGTGTCGAACA+CGG 0.636472 2_1:+25346598 Msa0202740:CDS
TGATACCTTATCTTAAACTG+AGG 0.636810 2_1:-25348877 None:intergenic
GTCAACAGTGACAAATCACA+TGG 0.644656 2_1:+25346163 Msa0202740:CDS
CACGGTTGATGATAATATCG+AGG 0.649591 2_1:+25346559 Msa0202740:CDS
GGAAGGATCATACAATGGAA+CGG 0.649681 2_1:+25347736 Msa0202740:CDS
GAACACACCGAATACTGTCA+CGG 0.654943 2_1:+25346541 Msa0202740:CDS
GCTACTAACAGAAGATTGCG+AGG 0.655666 2_1:-25346462 None:intergenic
ATTTGGCATAAGAAGAACGA+CGG 0.655741 2_1:+25348545 Msa0202740:CDS
CAGGAGGAAGGATCATACAA+TGG 0.657395 2_1:+25347731 Msa0202740:CDS
ACGGAACCAATGTATCAACC+GGG 0.670657 2_1:+25348564 Msa0202740:CDS
AGTGTCTTTCGAGGTTAACG+AGG 0.672111 2_1:+25346328 Msa0202740:CDS
TGAATCAAAACCGATTGCTG+CGG 0.676589 2_1:+25346673 Msa0202740:CDS
TTAAGATAAGGTATCACCTG+AGG 0.678198 2_1:+25348884 Msa0202740:three_prime_UTR
ACTGACGAGAAACCGTAGAG+AGG 0.683176 2_1:-25346764 None:intergenic
GAAAGGATAGAAGCTGCAGG+AGG 0.708767 2_1:+25347715 Msa0202740:CDS
GAATTGTGGTGATTCAAGAG+CGG 0.718429 2_1:+25347539 Msa0202740:CDS
GCTGTCTATGATGGACATGG+GGG 0.744893 2_1:+25346914 Msa0202740:CDS
CGGATCAGAGTTAAGCACCG+AGG 0.771642 2_1:+25347443 Msa0202740:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAAAGAAACGAATTTTTT+CGG - chr2_1:25347008-25347027 None:intergenic 15.0%
!! TTAAGAGCAATAATATTTAT+TGG + chr2_1:25347133-25347152 Msa0202740:intron 15.0%
!!! TATATGTTAATTACATTTTG+TGG - chr2_1:25348255-25348274 None:intergenic 15.0%
!!! ATAATGTAGAATTTTGATTT+GGG - chr2_1:25348915-25348934 None:intergenic 15.0%
!!! AATAATGTAGAATTTTGATT+TGG - chr2_1:25348916-25348935 None:intergenic 15.0%
!! TTTAAAAAAAATAAGGTTAC+AGG - chr2_1:25348997-25349016 None:intergenic 15.0%
!! TAAAAATTATAGGATTCTAG+AGG + chr2_1:25346046-25346065 Msa0202740:five_prime_UTR 20.0%
!! TAGAAAGAAAAGAAAACTTA+TGG + chr2_1:25346082-25346101 Msa0202740:exon 20.0%
!! ATTAAATTCCCAATTGAAAA+TGG - chr2_1:25346134-25346153 None:intergenic 20.0%
!! AAATATACACTTGAAAATTG+TGG - chr2_1:25348116-25348135 None:intergenic 20.0%
!! TATATTTGAATTTCGAATAC+TGG + chr2_1:25348166-25348185 Msa0202740:intron 20.0%
! AAAGAAAAGAAAACTTATGG+AGG + chr2_1:25346085-25346104 Msa0202740:exon 25.0%
!!! CTCTCTGAAATAAATAACTA+AGG - chr2_1:25347084-25347103 None:intergenic 25.0%
! TTTATTTCAGAGAGAGAAAT+AGG + chr2_1:25347090-25347109 Msa0202740:intron 25.0%
!!! ATTTATTGGTTTTTCCAGAA+AGG + chr2_1:25347147-25347166 Msa0202740:intron 25.0%
!!! CCAATTGTCTTTTTCATTTT+CGG - chr2_1:25347325-25347344 None:intergenic 25.0%
!!! ATCTACTTTTTGAAAGCAAT+TGG - chr2_1:25347373-25347392 None:intergenic 25.0%
! GATGGTTAACAAATATAACA+AGG - chr2_1:25348233-25348252 None:intergenic 25.0%
!! TGTTAATTACATTTTGTGGA+TGG - chr2_1:25348251-25348270 None:intergenic 25.0%
! ACAAAAGACATAAATTTCGA+TGG - chr2_1:25348293-25348312 None:intergenic 25.0%
! AGATGAGTATAAACTCAATA+TGG - chr2_1:25348333-25348352 None:intergenic 25.0%
!! AATTTTTGATAGACATTCTG+CGG - chr2_1:25348624-25348643 None:intergenic 25.0%
! CCTTATGAAAAAAATATCCA+GGG - chr2_1:25348817-25348836 None:intergenic 25.0%
!!! CCTGGATATTTTTTTCATAA+GGG + chr2_1:25348815-25348834 Msa0202740:three_prime_UTR 25.0%
! TTATAGGATTCTAGAGGATA+AGG + chr2_1:25346052-25346071 Msa0202740:five_prime_UTR 30.0%
ACAAATCACATGGAAATAAC+TGG + chr2_1:25346173-25346192 Msa0202740:CDS 30.0%
ATTAAATCCTGCTTCAATTG+AGG + chr2_1:25346232-25346251 Msa0202740:CDS 30.0%
TTAAATCCTGCTTCAATTGA+GGG + chr2_1:25346233-25346252 Msa0202740:CDS 30.0%
! ACTGATATTTGTTGATGTTG+CGG - chr2_1:25346311-25346330 None:intergenic 30.0%
!!! CAGTTTTGAAAGAAATGATG+AGG + chr2_1:25346397-25346416 Msa0202740:CDS 30.0%
AATATCGAGGATGATAAGTA+TGG + chr2_1:25346572-25346591 Msa0202740:CDS 30.0%
! AACAAGCTGTGATAATGATT+TGG + chr2_1:25346727-25346746 Msa0202740:CDS 30.0%
! CTTTTGTGTTTTCATTCACA+TGG - chr2_1:25346874-25346893 None:intergenic 30.0%
AATTGACAGGAAGGAATTTA+AGG - chr2_1:25346952-25346971 None:intergenic 30.0%
ATCACACAAACTTGGTAAAT+GGG - chr2_1:25347219-25347238 None:intergenic 30.0%
! AAGATGTTTCTGACAGTAAT+TGG - chr2_1:25347256-25347275 None:intergenic 30.0%
CCGAAAATGAAAAAGACAAT+TGG + chr2_1:25347322-25347341 Msa0202740:CDS 30.0%
AAAGTAGATGATGTGATTGT+AGG + chr2_1:25347384-25347403 Msa0202740:CDS 30.0%
!! ACTTTTTGGTCAATAGACAA+TGG - chr2_1:25347591-25347610 None:intergenic 30.0%
TGTCTATTGACCAAAAAGTA+AGG + chr2_1:25347592-25347611 Msa0202740:intron 30.0%
!! GAAACAAATGCCTTACTTTT+TGG - chr2_1:25347605-25347624 None:intergenic 30.0%
! TTGTTTCACAATTTGTTTGC+TGG + chr2_1:25347618-25347637 Msa0202740:intron 30.0%
GTTAACGATGTTCAAAATTG+TGG - chr2_1:25348094-25348113 None:intergenic 30.0%
ATTTCGAATACTGGAAATTG+CGG + chr2_1:25348175-25348194 Msa0202740:intron 30.0%
GTGATAAATACTTGAAACCA+TGG + chr2_1:25348390-25348409 Msa0202740:CDS 30.0%
TCAAAAATTGCTCATCAAAG+AGG + chr2_1:25348635-25348654 Msa0202740:CDS 30.0%
! AGTTATTGTTATTGACCTGA+AGG + chr2_1:25348676-25348695 Msa0202740:CDS 30.0%
CTAGTATATTTATTTAGCCC+TGG + chr2_1:25348797-25348816 Msa0202740:three_prime_UTR 30.0%
!!! CCCTGGATATTTTTTTCATA+AGG + chr2_1:25348814-25348833 Msa0202740:three_prime_UTR 30.0%
CCCTTATGAAAAAAATATCC+AGG - chr2_1:25348818-25348837 None:intergenic 30.0%
TACTAAAGTTTGCAGTTTAC+AGG + chr2_1:25348850-25348869 Msa0202740:three_prime_UTR 30.0%
ACTAAAGTTTGCAGTTTACA+GGG + chr2_1:25348851-25348870 Msa0202740:three_prime_UTR 30.0%
TGATACCTTATCTTAAACTG+AGG - chr2_1:25348880-25348899 None:intergenic 30.0%
AAAACATATACCGTTACAGA+TGG - chr2_1:25349099-25349118 None:intergenic 30.0%
TATGGAGGAAATAAGTTCGA+CGG + chr2_1:25346100-25346119 Msa0202740:exon 35.0%
!!! TTGCAGTGCCATTTTCAATT+GGG + chr2_1:25346123-25346142 Msa0202740:CDS 35.0%
ACAAATATCAGTGTCTTTCG+AGG + chr2_1:25346319-25346338 Msa0202740:CDS 35.0%
ACTTTCAAGAACCATTTCTG+AGG - chr2_1:25346375-25346394 None:intergenic 35.0%
! TAGCAAAAGCAGTCCTTTTA+CGG + chr2_1:25346481-25346500 Msa0202740:CDS 35.0%
TTGAGTAATACTCCTCTCTA+CGG + chr2_1:25346752-25346771 Msa0202740:CDS 35.0%
TATTGGAAGGAGACAAGAAA+TGG + chr2_1:25346787-25346806 Msa0202740:CDS 35.0%
!! GAAGGTACTTGAAAAAGTTG+AGG - chr2_1:25346833-25346852 None:intergenic 35.0%
AGTACCTTCAATGATGCTAA+TGG + chr2_1:25346844-25346863 Msa0202740:CDS 35.0%
TCATCCATTAGCATCATTGA+AGG - chr2_1:25346851-25346870 None:intergenic 35.0%
!!! CACTTTTTTGCTGTCTATGA+TGG + chr2_1:25346905-25346924 Msa0202740:CDS 35.0%
AAGTGACAGTTAAAAAGGAG+CGG - chr2_1:25346982-25347001 None:intergenic 35.0%
GGCAAAAGTGACAGTTAAAA+AGG - chr2_1:25346987-25347006 None:intergenic 35.0%
!! TTGGTTTTTCCAGAAAGGAA+CGG + chr2_1:25347152-25347171 Msa0202740:intron 35.0%
AAAGGAACGGAGAGAATATA+CGG + chr2_1:25347165-25347184 Msa0202740:intron 35.0%
CATCACACAAACTTGGTAAA+TGG - chr2_1:25347220-25347239 None:intergenic 35.0%
CATTTACCAAGTTTGTGTGA+TGG + chr2_1:25347218-25347237 Msa0202740:intron 35.0%
! GAAACATCTTCACTCAGTTT+TGG + chr2_1:25347266-25347285 Msa0202740:CDS 35.0%
! TTCTTTCCAACATTAGCTTC+AGG - chr2_1:25347414-25347433 None:intergenic 35.0%
GAAGCTAATGTTGGAAAGAA+CGG + chr2_1:25347414-25347433 Msa0202740:CDS 35.0%
CACAATTCGCAACTATTATG+TGG - chr2_1:25347527-25347546 None:intergenic 35.0%
CACATAATAGTTGCGAATTG+TGG + chr2_1:25347525-25347544 Msa0202740:CDS 35.0%
TGCAGTAAAACACATACCTA+TGG - chr2_1:25347797-25347816 None:intergenic 35.0%
GAGTGCTTAATTACGTTTAG+TGG + chr2_1:25348009-25348028 Msa0202740:intron 35.0%
GCTTAATTACGTTTAGTGGA+TGG + chr2_1:25348013-25348032 Msa0202740:intron 35.0%
AAATTGCGGTCATGTATATG+TGG + chr2_1:25348189-25348208 Msa0202740:intron 35.0%
TATACTCATCTTTGCTGAAG+TGG + chr2_1:25348342-25348361 Msa0202740:intron 35.0%
TTCAAGTATTTATCACCTGG+TGG - chr2_1:25348386-25348405 None:intergenic 35.0%
! GGTTTCAAGTATTTATCACC+TGG - chr2_1:25348389-25348408 None:intergenic 35.0%
CGTTCTTCTTATGCCAAATA+AGG - chr2_1:25348544-25348563 None:intergenic 35.0%
ATTTGGCATAAGAAGAACGA+CGG + chr2_1:25348545-25348564 Msa0202740:CDS 35.0%
! GGATACCTCAGTTTAAGATA+AGG + chr2_1:25348872-25348891 Msa0202740:three_prime_UTR 35.0%
! TTAAGATAAGGTATCACCTG+AGG + chr2_1:25348884-25348903 Msa0202740:three_prime_UTR 35.0%
!!! GTTGCAGTGCCATTTTCAAT+TGG + chr2_1:25346122-25346141 Msa0202740:CDS 40.0%
GTCAACAGTGACAAATCACA+TGG + chr2_1:25346163-25346182 Msa0202740:CDS 40.0%
! GGTTGTCAGTCTTTTTCTGT+TGG + chr2_1:25346254-25346273 Msa0202740:CDS 40.0%
! CAGTCTTTTTCTGTTGGAAG+TGG + chr2_1:25346260-25346279 Msa0202740:CDS 40.0%
! AGCAAAAGCAGTCCTTTTAC+GGG + chr2_1:25346482-25346501 Msa0202740:CDS 40.0%
TCATCAACCGTGACAGTATT+CGG - chr2_1:25346551-25346570 None:intergenic 40.0%
!! CACGGTTGATGATAATATCG+AGG + chr2_1:25346559-25346578 Msa0202740:CDS 40.0%
!! GAAGATAGAAGCATCTCAGA+TGG + chr2_1:25346647-25346666 Msa0202740:CDS 40.0%
TGAATCAAAACCGATTGCTG+CGG + chr2_1:25346673-25346692 Msa0202740:CDS 40.0%
TACGGTTTCTCGTCAGTTAT+TGG + chr2_1:25346770-25346789 Msa0202740:CDS 40.0%
GTTTCTCGTCAGTTATTGGA+AGG + chr2_1:25346774-25346793 Msa0202740:CDS 40.0%
! GACAGCAAAAAAGTGTGCTA+GGG - chr2_1:25346900-25346919 None:intergenic 40.0%
! AGACAGCAAAAAAGTGTGCT+AGG - chr2_1:25346901-25346920 None:intergenic 40.0%
!! TTTGCTGTCTATGATGGACA+TGG + chr2_1:25346911-25346930 Msa0202740:CDS 40.0%
!! TTGCTGTCTATGATGGACAT+GGG + chr2_1:25346912-25346931 Msa0202740:CDS 40.0%
GAGAGAGAAATAGGTAGACT+TGG + chr2_1:25347099-25347118 Msa0202740:intron 40.0%
ATATTCTCTCCGTTCCTTTC+TGG - chr2_1:25347164-25347183 None:intergenic 40.0%
ATGAAGCCATCACACAAACT+TGG - chr2_1:25347227-25347246 None:intergenic 40.0%
AGTTTGTGTGATGGCTTCAT+AGG + chr2_1:25347227-25347246 Msa0202740:intron 40.0%
!!! TCTTCACTCAGTTTTGGTTG+AGG + chr2_1:25347272-25347291 Msa0202740:CDS 40.0%
AAGACAATTGGCAAGACCAA+TGG + chr2_1:25347334-25347353 Msa0202740:CDS 40.0%
TGGTGAGTACTTTCTTCCAT+TGG - chr2_1:25347353-25347372 None:intergenic 40.0%
GTTGGAAAGAACGGTAATGA+CGG + chr2_1:25347423-25347442 Msa0202740:CDS 40.0%
GAATTGTGGTGATTCAAGAG+CGG + chr2_1:25347539-25347558 Msa0202740:CDS 40.0%
GGAAGGATCATACAATGGAA+CGG + chr2_1:25347736-25347755 Msa0202740:CDS 40.0%
!!! ATACCGAGTTCTTGGTGTTT+TGG + chr2_1:25347759-25347778 Msa0202740:CDS 40.0%
TTGTGGTTGATTGTGTCCAA+TGG - chr2_1:25348077-25348096 None:intergenic 40.0%
! TTTTCTTCATATCCACCACC+AGG + chr2_1:25348368-25348387 Msa0202740:intron 40.0%
AAGTATTTATCACCTGGTGG+TGG - chr2_1:25348383-25348402 None:intergenic 40.0%
! TCTGGATCTGGAATTATCCA+TGG - chr2_1:25348410-25348429 None:intergenic 40.0%
ACAAACTTGACTTCTGGATC+TGG - chr2_1:25348422-25348441 None:intergenic 40.0%
! AACCATCACTGGCTAGAATA+AGG - chr2_1:25348469-25348488 None:intergenic 40.0%
TTCTAGCCAGTGATGGTTTA+TGG + chr2_1:25348471-25348490 Msa0202740:CDS 40.0%
TCTAGCCAGTGATGGTTTAT+GGG + chr2_1:25348472-25348491 Msa0202740:CDS 40.0%
CTCGAAAGCGAATCCTTATT+TGG + chr2_1:25348528-25348547 Msa0202740:CDS 40.0%
!! TTTGATTTGGGAAGATCCTC+AGG - chr2_1:25348903-25348922 None:intergenic 40.0%
! TACAGATGGACTTCAGACAT+TGG - chr2_1:25349085-25349104 None:intergenic 40.0%
! TGTCTGAAGTCCATCTGTAA+CGG + chr2_1:25349086-25349105 Msa0202740:three_prime_UTR 40.0%
TGACAACCCTCAATTGAAGC+AGG - chr2_1:25346242-25346261 None:intergenic 45.0%
TCTGTTGGAAGTGGTGAAGA+CGG + chr2_1:25346269-25346288 Msa0202740:CDS 45.0%
AGTGTCTTTCGAGGTTAACG+AGG + chr2_1:25346328-25346347 Msa0202740:CDS 45.0%
!! TCAAGAACCATTTCTGAGGC+CGG - chr2_1:25346371-25346390 None:intergenic 45.0%
TGAGGAGTTCAAGACAGCTA+AGG + chr2_1:25346415-25346434 Msa0202740:CDS 45.0%
GCTACTAACAGAAGATTGCG+AGG - chr2_1:25346465-25346484 None:intergenic 45.0%
! GCAAAAGCAGTCCTTTTACG+GGG + chr2_1:25346483-25346502 Msa0202740:CDS 45.0%
! CAAAAGCAGTCCTTTTACGG+GGG + chr2_1:25346484-25346503 Msa0202740:CDS 45.0%
GAACACACCGAATACTGTCA+CGG + chr2_1:25346541-25346560 Msa0202740:CDS 45.0%
! GAATGAGCTAGTGTCGAACA+CGG + chr2_1:25346598-25346617 Msa0202740:CDS 45.0%
!!! GCAGCAATCGGTTTTGATTC+AGG - chr2_1:25346674-25346693 None:intergenic 45.0%
ATCTCATGAACCGCAGCAAT+CGG - chr2_1:25346686-25346705 None:intergenic 45.0%
!! TGCTGTCTATGATGGACATG+GGG + chr2_1:25346913-25346932 Msa0202740:CDS 45.0%
GGAGAGAGTAATTGACAGGA+AGG - chr2_1:25346961-25346980 None:intergenic 45.0%
GGAGTTCCTGAAGCTAATGT+TGG + chr2_1:25347405-25347424 Msa0202740:CDS 45.0%
AAGCTGAAGTGATCTGATGC+AGG + chr2_1:25347649-25347668 Msa0202740:intron 45.0%
CTCTCTATTAGGCTGCAAAC+AGG - chr2_1:25347686-25347705 None:intergenic 45.0%
CTGTTTGCAGCCTAATAGAG+AGG + chr2_1:25347684-25347703 Msa0202740:intron 45.0%
AGCCTAATAGAGAGGATGAG+TGG + chr2_1:25347692-25347711 Msa0202740:intron 45.0%
GCCTAATAGAGAGGATGAGT+GGG + chr2_1:25347693-25347712 Msa0202740:intron 45.0%
TCCCACTCATCCTCTCTATT+AGG - chr2_1:25347697-25347716 None:intergenic 45.0%
ATAGAGAGGATGAGTGGGAA+AGG + chr2_1:25347698-25347717 Msa0202740:CDS 45.0%
CAGGAGGAAGGATCATACAA+TGG + chr2_1:25347731-25347750 Msa0202740:CDS 45.0%
CTGCCAAAACACCAAGAACT+CGG - chr2_1:25347765-25347784 None:intergenic 45.0%
ACAACTCATTGACCGTCCAT+TGG + chr2_1:25348058-25348077 Msa0202740:intron 45.0%
GGTTGATTGTGTCCAATGGA+CGG - chr2_1:25348073-25348092 None:intergenic 45.0%
! TGCCTTATTCTAGCCAGTGA+TGG + chr2_1:25348464-25348483 Msa0202740:CDS 45.0%
CACATCCCATAAACCATCAC+TGG - chr2_1:25348480-25348499 None:intergenic 45.0%
GACGGAACCAATGTATCAAC+CGG + chr2_1:25348563-25348582 Msa0202740:CDS 45.0%
ACGGAACCAATGTATCAACC+GGG + chr2_1:25348564-25348583 Msa0202740:CDS 45.0%
!!! TACAAATTTTAAAAAAAATA+AGG - chr2_1:25349004-25349023 None:intergenic 5.0%
! GGATCAAGTTGCAGCTGAAC+CGG + chr2_1:25346349-25346368 Msa0202740:CDS 50.0%
ACTGACGAGAAACCGTAGAG+AGG - chr2_1:25346767-25346786 None:intergenic 50.0%
!! GCTGTCTATGATGGACATGG+GGG + chr2_1:25346914-25346933 Msa0202740:CDS 50.0%
GAGCGGAGAGAGTAATTGAC+AGG - chr2_1:25346965-25346984 None:intergenic 50.0%
CTCAGGAGCAAGAGTTTCCT+CGG - chr2_1:25347463-25347482 None:intergenic 50.0%
ACTCTTGCTCCTGAGACTGT+TGG + chr2_1:25347468-25347487 Msa0202740:CDS 50.0%
GCAGTTGATCCAACAGTCTC+AGG - chr2_1:25347480-25347499 None:intergenic 50.0%
GACTGTTGGATCAACTGCAC+TGG + chr2_1:25347482-25347501 Msa0202740:CDS 50.0%
TGGGAAAGGATAGAAGCTGC+AGG + chr2_1:25347712-25347731 Msa0202740:CDS 50.0%
GAAAGGATAGAAGCTGCAGG+AGG + chr2_1:25347715-25347734 Msa0202740:CDS 50.0%
TGGAACGGATACCGAGTTCT+TGG + chr2_1:25347751-25347770 Msa0202740:CDS 50.0%
! TTGGCAGTGTCGAGATCCAT+AGG + chr2_1:25347778-25347797 Msa0202740:CDS 50.0%
CGGAGGACAAACTTGACTTC+TGG - chr2_1:25348428-25348447 None:intergenic 50.0%
!!! ACTCGTCGTTTTTCTCTCGG+AGG - chr2_1:25348445-25348464 None:intergenic 50.0%
!!! GGCACTCGTCGTTTTTCTCT+CGG - chr2_1:25348448-25348467 None:intergenic 50.0%
! GTCTTGCCCGGTTGATACAT+TGG - chr2_1:25348573-25348592 None:intergenic 50.0%
!! ATCAACTCCTTGGTCTTGCC+CGG - chr2_1:25348585-25348604 None:intergenic 50.0%
TGAACTGTCTCTGAGCCTTC+AGG - chr2_1:25348694-25348713 None:intergenic 50.0%
! GATGGACTTCAGACATTGGC+AGG - chr2_1:25349081-25349100 None:intergenic 50.0%
AGCTGAACCGGCCTCAGAAA+TGG + chr2_1:25346361-25346380 Msa0202740:CDS 55.0%
ACTGCAGACTCCCCCGTAAA+AGG - chr2_1:25346497-25346516 None:intergenic 55.0%
! TGATGGACATGGGGGAAGTC+AGG + chr2_1:25346922-25346941 Msa0202740:CDS 55.0%
! CGGATCAGAGTTAAGCACCG+AGG + chr2_1:25347443-25347462 Msa0202740:CDS 55.0%
! TCAAGAGCGGTCTTGTGTCG+AGG + chr2_1:25347552-25347571 Msa0202740:CDS 55.0%
GGATAGAAGCTGCAGGAGGA+AGG + chr2_1:25347719-25347738 Msa0202740:CDS 55.0%
GTATCAACCGGGCAAGACCA+AGG + chr2_1:25348575-25348594 Msa0202740:CDS 55.0%
GAGCTGCAGGATCAACTCCT+TGG - chr2_1:25348595-25348614 None:intergenic 55.0%
TCTGCGGCATAATGAGCTGC+AGG - chr2_1:25348608-25348627 None:intergenic 55.0%
CGGGGGAGTCTGCAGTTTCG+AGG + chr2_1:25346501-25346520 Msa0202740:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 25346041 25349135 25346041 ID=Msa0202740;Name=Msa0202740
chr2_1 mRNA 25346041 25349135 25346041 ID=Msa0202740-mRNA-1;Parent=Msa0202740;Name=Msa0202740-mRNA-1;_AED=0.03;_eAED=0.03;_QI=60|1|1|1|1|1|4|408|548
chr2_1 exon 25346041 25346943 25346041 ID=Msa0202740-mRNA-1:exon:9699;Parent=Msa0202740-mRNA-1
chr2_1 exon 25347249 25347608 25347249 ID=Msa0202740-mRNA-1:exon:9700;Parent=Msa0202740-mRNA-1
chr2_1 exon 25347694 25347799 25347694 ID=Msa0202740-mRNA-1:exon:9701;Parent=Msa0202740-mRNA-1
chr2_1 exon 25348390 25349135 25348390 ID=Msa0202740-mRNA-1:exon:9702;Parent=Msa0202740-mRNA-1
chr2_1 five_prime_UTR 25346041 25346100 25346041 ID=Msa0202740-mRNA-1:five_prime_utr;Parent=Msa0202740-mRNA-1
chr2_1 CDS 25346101 25346943 25346101 ID=Msa0202740-mRNA-1:cds;Parent=Msa0202740-mRNA-1
chr2_1 CDS 25347249 25347608 25347249 ID=Msa0202740-mRNA-1:cds;Parent=Msa0202740-mRNA-1
chr2_1 CDS 25347694 25347799 25347694 ID=Msa0202740-mRNA-1:cds;Parent=Msa0202740-mRNA-1
chr2_1 CDS 25348390 25348727 25348390 ID=Msa0202740-mRNA-1:cds;Parent=Msa0202740-mRNA-1
chr2_1 three_prime_UTR 25348728 25349135 25348728 ID=Msa0202740-mRNA-1:three_prime_utr;Parent=Msa0202740-mRNA-1
Gene Sequence

>Msa0202740

ATGGAGGAAATAAGTTCGACGGTTGCAGTGCCATTTTCAATTGGGAATTTAATACAAAAAGAGTCAACAGTGACAAATCACATGGAAATAACTGGTTTAAATCTTATGACAAATACATCATCTGTTTTAATATTAAATCCTGCTTCAATTGAGGGTTGTCAGTCTTTTTCTGTTGGAAGTGGTGAAGACGGTGACGCAGATATTAGTCCGCAACATCAACAAATATCAGTGTCTTTCGAGGTTAACGAGGATCAAGTTGCAGCTGAACCGGCCTCAGAAATGGTTCTTGAAAGTGACAGTTTTGAAAGAAATGATGAGGAGTTCAAGACAGCTAAGGATTTTCAGTGTATACATAATCAATCCTCGCAATCTTCTGTTAGTAGCAAAAGCAGTCCTTTTACGGGGGAGTCTGCAGTTTCGAGGACTAATTTGTCTGAAATGAACACACCGAATACTGTCACGGTTGATGATAATATCGAGGATGATAAGTATGGTTTGAATGAGCTAGTGTCGAACACGGCTTCTGTTGTAATGAAACATGAGAGTGAAGATAGAAGCATCTCAGATGGTCCTGAATCAAAACCGATTGCTGCGGTTCATGAGATGCTAGAGCAGCAAACAAGCACAACAAGCTGTGATAATGATTTGGAATTGAGTAATACTCCTCTCTACGGTTTCTCGTCAGTTATTGGAAGGAGACAAGAAATGGAAGATACTATTGTTATTAAACCTCAACTTTTTCAAGTACCTTCAATGATGCTAATGGATGACCATGTGAATGAAAACACAAAAGATTCCCTAGCACACTTTTTTGCTGTCTATGATGGACATGGGGGAAGTCAGGTTGCCAATTACTGTCAGAAACATCTTCACTCAGTTTTGGTTGAGGAGATAGAAGCTGCAGAATCAAGTTTATCCGAAAATGAAAAAGACAATTGGCAAGACCAATGGAAGAAAGTACTCACCAATTGCTTTCAAAAAGTAGATGATGTGATTGTAGGAGTTCCTGAAGCTAATGTTGGAAAGAACGGTAATGACGGATCAGAGTTAAGCACCGAGGAAACTCTTGCTCCTGAGACTGTTGGATCAACTGCACTGGTTGCAATTTTGACTCAAAACCACATAATAGTTGCGAATTGTGGTGATTCAAGAGCGGTCTTGTGTCGAGGAAAAGAAGCACTTCCATTGTCTATTGACCAAAAACCTAATAGAGAGGATGAGTGGGAAAGGATAGAAGCTGCAGGAGGAAGGATCATACAATGGAACGGATACCGAGTTCTTGGTGTTTTGGCAGTGTCGAGATCCATAGGTGATAAATACTTGAAACCATGGATAATTCCAGATCCAGAAGTCAAGTTTGTCCTCCGAGAGAAAAACGACGAGTGCCTTATTCTAGCCAGTGATGGTTTATGGGATGTGATTACAAATGAAGAAGCGTGTGACTTTGCTCGAAAGCGAATCCTTATTTGGCATAAGAAGAACGACGGAACCAATGTATCAACCGGGCAAGACCAAGGAGTTGATCCTGCAGCTCATTATGCCGCAGAATGTCTATCAAAAATTGCTCATCAAAGAGGAAGCAAAGATAATATCTCAGTTATTGTTATTGACCTGAAGGCTCAGAGACAGTTCAAGAAAAAAACATAA

Protein sequence

>Msa0202740

MEEISSTVAVPFSIGNLIQKESTVTNHMEITGLNLMTNTSSVLILNPASIEGCQSFSVGSGEDGDADISPQHQQISVSFEVNEDQVAAEPASEMVLESDSFERNDEEFKTAKDFQCIHNQSSQSSVSSKSSPFTGESAVSRTNLSEMNTPNTVTVDDNIEDDKYGLNELVSNTASVVMKHESEDRSISDGPESKPIAAVHEMLEQQTSTTSCDNDLELSNTPLYGFSSVIGRRQEMEDTIVIKPQLFQVPSMMLMDDHVNENTKDSLAHFFAVYDGHGGSQVANYCQKHLHSVLVEEIEAAESSLSENEKDNWQDQWKKVLTNCFQKVDDVIVGVPEANVGKNGNDGSELSTEETLAPETVGSTALVAILTQNHIIVANCGDSRAVLCRGKEALPLSIDQKPNREDEWERIEAAGGRIIQWNGYRVLGVLAVSRSIGDKYLKPWIIPDPEVKFVLREKNDECLILASDGLWDVITNEEACDFARKRILIWHKKNDGTNVSTGQDQGVDPAAHYAAECLSKIAHQRGSKDNISVIVIDLKAQRQFKKKT*