AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1338590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1338590 MtrunA17_Chr7g0260531 88.957 163 9 3 1 162 1 155 2.80e-100 289
Msa1338590 MtrunA17_Chr1g0184911 52.469 162 73 3 1 162 9 166 2.84e-54 172
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1338590 AT1G03055.2 40.650 123 67 2 46 162 50 172 2.22e-24 94.7
Msa1338590 AT1G03055.1 40.650 123 67 2 46 162 50 172 1.05e-23 94.4

Find 60 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTATATACTAATATTATT+TGG 0.179495 tig0002300:-4872 Msa1338590:three_prime_UTR
AGGATTTGTTGTAGGCTTTA+AGG 0.181015 tig0002300:-5102 Msa1338590:three_prime_UTR
AAATAATATTAGTATATAAT+AGG 0.224577 tig0002300:+4874 None:intergenic
CTAATGTCTACAAAGATAAT+TGG 0.247086 tig0002300:-8520 Msa1338590:CDS
ATGTTCTTTACTTGGTTACT+TGG 0.266301 tig0002300:-8072 Msa1338590:CDS
CAAAGGTTTATTTATATGAT+AGG 0.284336 tig0002300:-4929 Msa1338590:three_prime_UTR
CCTTGTTGAGGCAGCTACTA+TGG 0.314275 tig0002300:-8334 Msa1338590:CDS
GGATTTGTTGTAGGCTTTAA+GGG 0.320503 tig0002300:-5101 Msa1338590:three_prime_UTR
ATGCAATAAGGATTGGAAAT+TGG 0.329708 tig0002300:-5204 Msa1338590:three_prime_UTR
GCAATGGAATGAATTGTATA+AGG 0.338599 tig0002300:+8743 None:intergenic
TCTGTAATGTCATGATTTGA+AGG 0.353713 tig0002300:+8566 None:intergenic
CAGATTCTGCTCTTTCCGTT+TGG 0.357589 tig0002300:+8841 None:intergenic
ATTCTTAATGAGAGAAACTA+TGG 0.357956 tig0002300:+5010 None:intergenic
TATAAACATGTAATTATTAG+TGG 0.359033 tig0002300:+5389 None:intergenic
GATATTGCAATCATAAATAA+AGG 0.369419 tig0002300:+5163 None:intergenic
TTGACTAAAGGATTTGTTGT+AGG 0.371806 tig0002300:-5110 Msa1338590:three_prime_UTR
AATTTCTTTAGCATGCAATA+AGG 0.375492 tig0002300:-5216 Msa1338590:three_prime_UTR
GTGTTAATAAGAAGCATATA+AGG 0.385320 tig0002300:+8774 None:intergenic
CTATCATATAAATAAACCTT+TGG 0.398207 tig0002300:+4930 None:intergenic
CTTGTAAATTTAGGTGGTAG+TGG 0.406057 tig0002300:+8120 None:intergenic
AATAATATTAGTATATAATA+GGG 0.409170 tig0002300:+4875 None:intergenic
TCACCACTATGTTCTTTACT+TGG 0.413302 tig0002300:-8080 Msa1338590:CDS
GGGAGAAGTGGTTTGACTAA+AGG 0.415057 tig0002300:-5122 Msa1338590:three_prime_UTR
TTATTAATGTTAATTTAAAC+CGG 0.418972 tig0002300:-5263 Msa1338590:three_prime_UTR
CACTACCACCTAAATTTACA+AGG 0.429034 tig0002300:-8119 Msa1338590:CDS
CAAACGGAAAGAGCAGAATC+TGG 0.433242 tig0002300:-8840 Msa1338590:five_prime_UTR
CTTTAGCATGCAATAAGGAT+TGG 0.438630 tig0002300:-5211 Msa1338590:three_prime_UTR
GGCTTTAAGGGCAGCAAGGA+TGG 0.455650 tig0002300:-5089 Msa1338590:three_prime_UTR
GAGTCTATCAAGAGCTTGAA+TGG 0.459713 tig0002300:+8272 None:intergenic
CTCAAAACAACATTCACAAA+TGG 0.473195 tig0002300:-8699 Msa1338590:exon
TGTTCTTTACTTGGTTACTT+GGG 0.479606 tig0002300:-8071 Msa1338590:CDS
TGGCTGATGAGTATGAGTTT+TGG 0.479804 tig0002300:+5030 None:intergenic
TGCTAAGGATCACTATTCTC+CGG 0.480828 tig0002300:+5244 None:intergenic
ACTATAGAAGTTGGATGTTG+AGG 0.505938 tig0002300:+8605 None:intergenic
AGCACGGCAACTATAGAAGT+TGG 0.508359 tig0002300:+8596 None:intergenic
GTTGAGGTTTATGTTTGATG+AGG 0.512812 tig0002300:+8621 None:intergenic
TAATGCTATTCAACAACAAG+AGG 0.546204 tig0002300:-8298 Msa1338590:CDS
CAGACTGTCTCTAGACGGTA+TGG 0.546844 tig0002300:-5460 Msa1338590:CDS
CTGTCTCTAGACGGTATGGA+TGG 0.550258 tig0002300:-5456 Msa1338590:CDS
GGCAAGGCATATAAAAGTCA+TGG 0.554697 tig0002300:-5485 Msa1338590:CDS
AATCTATTATCTAAACCAAA+CGG 0.556799 tig0002300:-8856 Msa1338590:five_prime_UTR
ATTTGAAGGCTTTCTAAGCA+CGG 0.562335 tig0002300:+8580 None:intergenic
AATTCCCTTGTAAATTTAGG+TGG 0.568975 tig0002300:+8114 None:intergenic
TGAACCTGTGGCAGCTTGAA+CGG 0.569981 tig0002300:+8463 None:intergenic
TGGCAGCATACGAAATGTGT+GGG 0.579991 tig0002300:+5050 None:intergenic
AAAACCGTTCAAGCTGCCAC+AGG 0.594953 tig0002300:-8467 Msa1338590:intron
CCATAGTAGCTGCCTCAACA+AGG 0.595349 tig0002300:+8334 None:intergenic
TTGGTTACTTGGGCCATCCG+AGG 0.598797 tig0002300:-8061 Msa1338590:intron
TTGGCAGCATACGAAATGTG+TGG 0.605520 tig0002300:+5049 None:intergenic
TGTAGGCTTTAAGGGCAGCA+AGG 0.609155 tig0002300:-5093 Msa1338590:three_prime_UTR
ACTAATGCAAATACAAACTG+TGG 0.612608 tig0002300:+8246 None:intergenic
TGTGACAGAGAAATATGCAA+TGG 0.613866 tig0002300:+8727 None:intergenic
TAACCAAGTAAAGAACATAG+TGG 0.616885 tig0002300:+8077 None:intergenic
TGGCTATGAGAGCCTTGTTG+AGG 0.620691 tig0002300:-8346 Msa1338590:CDS
TTATTTATATGATAGGCAAG+TGG 0.638536 tig0002300:-4922 Msa1338590:three_prime_UTR
GTATAAGACTAATAATCCAA+AGG 0.653527 tig0002300:-4946 Msa1338590:three_prime_UTR
GGACTCAGAAACAATAAGAG+TGG 0.655708 tig0002300:-8366 Msa1338590:CDS
GAAATTGGTGATGACAACAT+TGG 0.656972 tig0002300:-5189 Msa1338590:three_prime_UTR
ACTACCACCTAAATTTACAA+GGG 0.671104 tig0002300:-8118 Msa1338590:CDS
TGGAACAGACTGTCTCTAGA+CGG 0.681909 tig0002300:-5465 Msa1338590:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAATGTTTAATGTAAA+TGG - tig0002300:5931-5950 Msa1338590:intron 10.0%
!!! ATTAATCTTTTTTAAATCAT+AGG + tig0002300:6350-6369 None:intergenic 10.0%
!! TAATGATGAAAAATAAATAA+GGG - tig0002300:7846-7865 Msa1338590:intron 10.0%
!! TATGAATTGAAAATATAAAT+TGG + tig0002300:8102-8121 None:intergenic 10.0%
!! TTATTAATGTTAATTTAAAC+CGG - tig0002300:8466-8485 Msa1338590:intron 10.0%
!! CTTAATTCATTTATACTATA+TGG - tig0002300:6477-6496 Msa1338590:intron 15.0%
!!! TTCATTTGTTTATTTTTTAG+TGG + tig0002300:7057-7076 None:intergenic 15.0%
!! TAACTTAACAGATATTATTT+AGG + tig0002300:7284-7303 None:intergenic 15.0%
!!! CTTATTTATTTTTCATCATT+AGG + tig0002300:7847-7866 None:intergenic 15.0%
!! CTAATGATGAAAAATAAATA+AGG - tig0002300:7845-7864 Msa1338590:intron 15.0%
!! AAAAAAAAGAGTAATAAAGT+TGG + tig0002300:8166-8185 None:intergenic 15.0%
!! TATAAACATGTAATTATTAG+TGG + tig0002300:8343-8362 None:intergenic 15.0%
!!! TTTATATTTTCTTCTTCTTT+GGG - tig0002300:8357-8376 Msa1338590:CDS 15.0%
!!! TAAAGAAATTTTTTATGCTA+AGG + tig0002300:8503-8522 None:intergenic 15.0%
!! AATCTATTATCTAAACCAAA+CGG - tig0002300:4873-4892 Msa1338590:three_prime_UTR 20.0%
!! ACAATTGAATTACAACAAAA+GGG + tig0002300:5298-5317 None:intergenic 20.0%
!! AACAATTGAATTACAACAAA+AGG + tig0002300:5299-5318 None:intergenic 20.0%
!! GAAATTACAATGCTTAAAAA+TGG + tig0002300:5541-5560 None:intergenic 20.0%
!! AAAAATTCCCTTGTAAATTT+AGG + tig0002300:5621-5640 None:intergenic 20.0%
!! GAAATTTACTATAAGCTTAA+TGG - tig0002300:5812-5831 Msa1338590:intron 20.0%
!! GATATGTTATAGATAAACTA+AGG + tig0002300:6121-6140 None:intergenic 20.0%
!!! ATCTTTTTTAAATCATAGGA+CGG + tig0002300:6346-6365 None:intergenic 20.0%
!! TGAATTATGAAGGATATATA+CGG + tig0002300:6508-6527 None:intergenic 20.0%
!! TCAAAAAAATTAATACATGC+AGG - tig0002300:6837-6856 Msa1338590:intron 20.0%
!! TTCCAAAATTAAACCTAAAT+AGG - tig0002300:6982-7001 Msa1338590:intron 20.0%
!!! TTCCTATTTAGGTTTAATTT+TGG + tig0002300:6987-7006 None:intergenic 20.0%
!! GTTAAGTTAAACTTCATATA+TGG - tig0002300:7295-7314 Msa1338590:intron 20.0%
!! ATATTAACTCAAGAACTATA+GGG + tig0002300:7372-7391 None:intergenic 20.0%
!! AATATTAACTCAAGAACTAT+AGG + tig0002300:7373-7392 None:intergenic 20.0%
!! GAGATTTATTTAATCATGTT+AGG + tig0002300:7877-7896 None:intergenic 20.0%
!! AATCTAAATGTATACTTCAA+TGG + tig0002300:7902-7921 None:intergenic 20.0%
!!! GTTTATATTTTCTTCTTCTT+TGG - tig0002300:8356-8375 Msa1338590:CDS 20.0%
!!! TTATATTTTCTTCTTCTTTG+GGG - tig0002300:8358-8377 Msa1338590:CDS 20.0%
!!! TACATTTTCTGTAGAAAATT+AGG - tig0002300:8398-8417 Msa1338590:intron 20.0%
!! GATATTGCAATCATAAATAA+AGG + tig0002300:8569-8588 None:intergenic 20.0%
!!! TATCAAGTAGTTTCTATTTT+TGG - tig0002300:8585-8604 Msa1338590:CDS 20.0%
!!! ATCAAGTAGTTTCTATTTTT+GGG - tig0002300:8586-8605 Msa1338590:CDS 20.0%
!! CTATCATATAAATAAACCTT+TGG + tig0002300:8802-8821 None:intergenic 20.0%
!! CAAAGGTTTATTTATATGAT+AGG - tig0002300:8800-8819 Msa1338590:five_prime_UTR 20.0%
!! GTGTTAATAAGAAGCATATA+AGG + tig0002300:4958-4977 None:intergenic 25.0%
!! AAATGGAAACTAATGTTTTC+AGG - tig0002300:5047-5066 Msa1338590:three_prime_UTR 25.0%
! CTAATGTCTACAAAGATAAT+TGG - tig0002300:5209-5228 Msa1338590:three_prime_UTR 25.0%
! GTAATTCAATTGTTATCTCA+AGG - tig0002300:5305-5324 Msa1338590:three_prime_UTR 25.0%
!! TTGTAGTTTTTATTCTTTGC+AGG - tig0002300:5342-5361 Msa1338590:three_prime_UTR 25.0%
! GCATAAAAACAATTTCATTG+TGG + tig0002300:5563-5582 None:intergenic 25.0%
!!! GTTGTTTCTTTATCTGTAAT+TGG + tig0002300:5590-5609 None:intergenic 25.0%
!!! TTTTTTTCAACAAGACTTAG+TGG + tig0002300:5874-5893 None:intergenic 25.0%
!! TCTTTAATTTAACCATGAGT+AGG - tig0002300:6371-6390 Msa1338590:intron 25.0%
!! AGAAGCATAATCATAGATTA+TGG + tig0002300:6701-6720 None:intergenic 25.0%
! GACAAAAATCATAACAAGAA+AGG + tig0002300:6744-6763 None:intergenic 25.0%
!!! TCTTGTTATGATTTTTGTCA+TGG - tig0002300:6745-6764 Msa1338590:intron 25.0%
!! AATTAATACATGCAGGTTTT+TGG - tig0002300:6844-6863 Msa1338590:intron 25.0%
! TTCTTTATAAACGATTGAGT+TGG + tig0002300:6914-6933 None:intergenic 25.0%
!!! GGTTTAATTTTGGAATTGTT+AGG + tig0002300:6977-6996 None:intergenic 25.0%
! CATCATGATATTTCCTATTT+AGG + tig0002300:6998-7017 None:intergenic 25.0%
!!! TCATCATTGATTCATTTCAA+TGG - tig0002300:7149-7168 Msa1338590:intron 25.0%
!!! ATATGAGAGATGTCATTTTA+TGG + tig0002300:7220-7239 None:intergenic 25.0%
!! ATATTATTTAGGTTCATGAG+AGG + tig0002300:7273-7292 None:intergenic 25.0%
!! TTTTAATCTTCCAATGTATG+AGG - tig0002300:7340-7359 Msa1338590:intron 25.0%
! ATATCTCTAGTTAGTCAATT+TGG - tig0002300:7400-7419 Msa1338590:intron 25.0%
! AACGTTGAGTATTAATTCAA+TGG + tig0002300:7660-7679 None:intergenic 25.0%
! TAATCACATTGTTTATAGCA+TGG + tig0002300:8045-8064 None:intergenic 25.0%
! TTTATGTTCATATATCATGC+AGG - tig0002300:8223-8242 Msa1338590:intron 25.0%
! AATTTCTTTAGCATGCAATA+AGG - tig0002300:8513-8532 Msa1338590:CDS 25.0%
!!! TCAAGTAGTTTCTATTTTTG+GGG - tig0002300:8587-8606 Msa1338590:CDS 25.0%
! ATTCTTAATGAGAGAAACTA+TGG + tig0002300:8722-8741 None:intergenic 25.0%
! GTATAAGACTAATAATCCAA+AGG - tig0002300:8783-8802 Msa1338590:five_prime_UTR 25.0%
! TTATTTATATGATAGGCAAG+TGG - tig0002300:8807-8826 Msa1338590:five_prime_UTR 25.0%
GCAATGGAATGAATTGTATA+AGG + tig0002300:4989-5008 None:intergenic 30.0%
CTCAAAACAACATTCACAAA+TGG - tig0002300:5030-5049 Msa1338590:three_prime_UTR 30.0%
TCTGTAATGTCATGATTTGA+AGG + tig0002300:5166-5185 None:intergenic 30.0%
! CTTGAACGGTTTTTGATAAA+TGG + tig0002300:5255-5274 None:intergenic 30.0%
TAATGCTATTCAACAACAAG+AGG - tig0002300:5431-5450 Msa1338590:exon 30.0%
ACTAATGCAAATACAAACTG+TGG + tig0002300:5486-5505 None:intergenic 30.0%
ACTACCACCTAAATTTACAA+GGG - tig0002300:5611-5630 Msa1338590:intron 30.0%
AATTCCCTTGTAAATTTAGG+TGG + tig0002300:5618-5637 None:intergenic 30.0%
TAACCAAGTAAAGAACATAG+TGG + tig0002300:5655-5674 None:intergenic 30.0%
ATGTTCTTTACTTGGTTACT+TGG - tig0002300:5657-5676 Msa1338590:intron 30.0%
TGTTCTTTACTTGGTTACTT+GGG - tig0002300:5658-5677 Msa1338590:intron 30.0%
!! AACATCTCAGTTTTATACCT+CGG + tig0002300:5688-5707 None:intergenic 30.0%
!!! CTTGTATTTTGATAAACCTC+TGG + tig0002300:5994-6013 None:intergenic 30.0%
TTGCTAATGAAACTGAAATG+TGG + tig0002300:6200-6219 None:intergenic 30.0%
GTAAAAGCAAATAGCATACA+TGG + tig0002300:6320-6339 None:intergenic 30.0%
! TAAGAGAATCTGAGATCAAT+GGG - tig0002300:6394-6413 Msa1338590:intron 30.0%
! GATAGAGAAGCAATGATTTT+AGG - tig0002300:6619-6638 Msa1338590:intron 30.0%
TATGATTATGCTTCTCCTTA+CGG - tig0002300:6706-6725 Msa1338590:intron 30.0%
ATCGTTTATAAAGAACACTC+TGG - tig0002300:6919-6938 Msa1338590:intron 30.0%
TCGTTTATAAAGAACACTCT+GGG - tig0002300:6920-6939 Msa1338590:intron 30.0%
GAATTGTTAGGATACTTACT+TGG + tig0002300:6965-6984 None:intergenic 30.0%
!! TCATTGATTCATTTCAATGG+AGG - tig0002300:7152-7171 Msa1338590:intron 30.0%
AATGACATCTCTCATATCTA+TGG - tig0002300:7223-7242 Msa1338590:intron 30.0%
!!! AATGGTTTTGGGATAAATTC+TGG + tig0002300:7486-7505 None:intergenic 30.0%
ATGAGTTGTGAGATGATATT+TGG - tig0002300:7976-7995 Msa1338590:intron 30.0%
! CAAAACTTGAGACATGATTT+TGG - tig0002300:8130-8149 Msa1338590:CDS 30.0%
ATGCAATAAGGATTGGAAAT+TGG - tig0002300:8525-8544 Msa1338590:CDS 30.0%
!! TTGACTAAAGGATTTGTTGT+AGG - tig0002300:8619-8638 Msa1338590:CDS 30.0%
TGTGACAGAGAAATATGCAA+TGG + tig0002300:5005-5024 None:intergenic 35.0%
GTTGAGGTTTATGTTTGATG+AGG + tig0002300:5111-5130 None:intergenic 35.0%
ACTATAGAAGTTGGATGTTG+AGG + tig0002300:5127-5146 None:intergenic 35.0%
ATTTGAAGGCTTTCTAAGCA+CGG + tig0002300:5152-5171 None:intergenic 35.0%
CTTGTAAATTTAGGTGGTAG+TGG + tig0002300:5612-5631 None:intergenic 35.0%
CACTACCACCTAAATTTACA+AGG - tig0002300:5610-5629 Msa1338590:intron 35.0%
TCACCACTATGTTCTTTACT+TGG - tig0002300:5649-5668 Msa1338590:intron 35.0%
TTCAGTCGCATAATTAGTAG+TGG + tig0002300:5795-5814 None:intergenic 35.0%
ATAAGCTTAATGGTGATAGC+TGG - tig0002300:5822-5841 Msa1338590:intron 35.0%
TGATTAGAAAGACACTTGCA+TGG - tig0002300:6016-6035 Msa1338590:intron 35.0%
TAATTGTCACACCAGTTAGT+GGG + tig0002300:6148-6167 None:intergenic 35.0%
AACTGAAATGTGGCATAATC+TGG + tig0002300:6190-6209 None:intergenic 35.0%
! GTAAGAGAATCTGAGATCAA+TGG - tig0002300:6393-6412 Msa1338590:intron 35.0%
CAGTCTACATCAAAAAATGC+AGG - tig0002300:6433-6452 Msa1338590:intron 35.0%
TATGTGACAGAATGTGTCTT+AGG + tig0002300:6535-6554 None:intergenic 35.0%
AGATCCTCTAAATCGTTGTA+TGG - tig0002300:6567-6586 Msa1338590:intron 35.0%
CTCTAAATCGTTGTATGGTT+CGG - tig0002300:6572-6591 Msa1338590:intron 35.0%
CGAAAGCTAATGTATCCTAT+TGG + tig0002300:6600-6619 None:intergenic 35.0%
GAACCATACAACTACTTTAG+AGG - tig0002300:6666-6685 Msa1338590:intron 35.0%
!! GATCCTCTAAAGTAGTTGTA+TGG + tig0002300:6672-6691 None:intergenic 35.0%
! TACAACTACTTTAGAGGATC+TGG - tig0002300:6672-6691 Msa1338590:intron 35.0%
ATCATAACAAGAAAGGAGAG+TGG + tig0002300:6737-6756 None:intergenic 35.0%
TTGACAACAAACTCTTGCTA+TGG + tig0002300:6774-6793 None:intergenic 35.0%
!! TAATACATGCAGGTTTTTGG+AGG - tig0002300:6847-6866 Msa1338590:intron 35.0%
!! CTACACTTGAAAGAGTATCA+TGG - tig0002300:7090-7109 Msa1338590:intron 35.0%
TATCCCAAAACCATTTCTGT+TGG - tig0002300:7491-7510 Msa1338590:intron 35.0%
GTTGGATGTAAAAACACATG+AGG + tig0002300:7558-7577 None:intergenic 35.0%
! ATAGTTTGTGTCGCTATGTA+TGG - tig0002300:7613-7632 Msa1338590:intron 35.0%
CAATGGATCAAACTAACAAG+AGG + tig0002300:7643-7662 None:intergenic 35.0%
TGAACCTATCATAGAATGAG+TGG - tig0002300:7784-7803 Msa1338590:intron 35.0%
AACACCACTCATTCTATGAT+AGG + tig0002300:7791-7810 None:intergenic 35.0%
AAGAGTAATAAAGTTGGCGT+TGG + tig0002300:8160-8179 None:intergenic 35.0%
CTTTAGCATGCAATAAGGAT+TGG - tig0002300:8518-8537 Msa1338590:CDS 35.0%
!! GAAATTGGTGATGACAACAT+TGG - tig0002300:8540-8559 Msa1338590:CDS 35.0%
!!! TTTCTATTTTTGGGGAGAAG+TGG - tig0002300:8595-8614 Msa1338590:CDS 35.0%
!! AGGATTTGTTGTAGGCTTTA+AGG - tig0002300:8627-8646 Msa1338590:CDS 35.0%
!! GGATTTGTTGTAGGCTTTAA+GGG - tig0002300:8628-8647 Msa1338590:CDS 35.0%
! AAAGGGTATGTATGAACCTG+TGG + tig0002300:5281-5300 None:intergenic 40.0%
GGACTCAGAAACAATAAGAG+TGG - tig0002300:5363-5382 Msa1338590:three_prime_UTR 40.0%
GAGTCTATCAAGAGCTTGAA+TGG + tig0002300:5460-5479 None:intergenic 40.0%
!! TCTCAGTTTTATACCTCGGA+TGG + tig0002300:5684-5703 None:intergenic 40.0%
! GTCGCATAATTAGTAGTGGA+AGG + tig0002300:5791-5810 None:intergenic 40.0%
!! AAGACTTAGTGGACTCGATT+TGG + tig0002300:5863-5882 None:intergenic 40.0%
GGCAGAGCAGAAAATATAGT+CGG - tig0002300:5952-5971 Msa1338590:intron 40.0%
CAGAGACATTAACAAACCAG+AGG - tig0002300:5975-5994 Msa1338590:intron 40.0%
!! CCACTCGTTTTCTAGTAACA+AGG + tig0002300:6083-6102 None:intergenic 40.0%
CCTTGTTACTAGAAAACGAG+TGG - tig0002300:6080-6099 Msa1338590:intron 40.0%
AATTGTCACACCAGTTAGTG+GGG + tig0002300:6147-6166 None:intergenic 40.0%
CTAATTGTCACACCAGTTAG+TGG + tig0002300:6149-6168 None:intergenic 40.0%
CAGATTCTCTTACCTACTCA+TGG + tig0002300:6386-6405 None:intergenic 40.0%
CTTAGGTGGGTGAATTATGA+AGG + tig0002300:6518-6537 None:intergenic 40.0%
TGACAGAATGTGTCTTAGGT+GGG + tig0002300:6531-6550 None:intergenic 40.0%
CGAACCATACAACGATTTAG+AGG + tig0002300:6574-6593 None:intergenic 40.0%
!! GGATTTTAGAGACCATATGC+TGG - tig0002300:6640-6659 Msa1338590:intron 40.0%
TTGGAGGAGACAAATTGTGT+AGG - tig0002300:6863-6882 Msa1338590:intron 40.0%
TGGAGGAGACAAATTGTGTA+GGG - tig0002300:6864-6883 Msa1338590:intron 40.0%
TTACTTGGTACCATGTTGAC+TGG + tig0002300:6950-6969 None:intergenic 40.0%
! CTGCCAACAGAAATGGTTTT+GGG + tig0002300:7497-7516 None:intergenic 40.0%
! TCTGCCAACAGAAATGGTTT+TGG + tig0002300:7498-7517 None:intergenic 40.0%
AGTTTACAAAGAGGAATGGG+CGG + tig0002300:7534-7553 None:intergenic 40.0%
GGCAGTTTACAAAGAGGAAT+GGG + tig0002300:7537-7556 None:intergenic 40.0%
AGGCAGTTTACAAAGAGGAA+TGG + tig0002300:7538-7557 None:intergenic 40.0%
ACATGAGGCAGTTTACAAAG+AGG + tig0002300:7543-7562 None:intergenic 40.0%
CCAACGTGTTATACTCATGT+TGG + tig0002300:7576-7595 None:intergenic 40.0%
CCAACATGAGTATAACACGT+TGG - tig0002300:7573-7592 Msa1338590:intron 40.0%
GATCATCAATTGATGCTGGA+GGG + tig0002300:8008-8027 None:intergenic 40.0%
GATGGATCATCAATTGATGC+TGG + tig0002300:8012-8031 None:intergenic 40.0%
GTTCATATATCATGCAGGCA+AGG - tig0002300:8228-8247 Msa1338590:intron 40.0%
GGCAAGGCATATAAAAGTCA+TGG - tig0002300:8244-8263 Msa1338590:intron 40.0%
TGCTAAGGATCACTATTCTC+CGG + tig0002300:8488-8507 None:intergenic 40.0%
! TGGCTGATGAGTATGAGTTT+TGG + tig0002300:8702-8721 None:intergenic 40.0%
CAGATTCTGCTCTTTCCGTT+TGG + tig0002300:4891-4910 None:intergenic 45.0%
CAAACGGAAAGAGCAGAATC+TGG - tig0002300:4889-4908 Msa1338590:three_prime_UTR 45.0%
AGCACGGCAACTATAGAAGT+TGG + tig0002300:5136-5155 None:intergenic 45.0%
ACACTTGCATGGAAACTGAG+TGG - tig0002300:6027-6046 Msa1338590:intron 45.0%
ACATATCATGCCCCACTAAC+TGG - tig0002300:6134-6153 Msa1338590:intron 45.0%
GTGACAGAATGTGTCTTAGG+TGG + tig0002300:6532-6551 None:intergenic 45.0%
GTATGGTTCAGTCCAGCATA+TGG + tig0002300:6655-6674 None:intergenic 45.0%
! AATGTAGTGGAGGCTTGTAG+AGG + tig0002300:7116-7135 None:intergenic 45.0%
TACAAGCCTCCACTACATTG+TGG - tig0002300:7117-7136 Msa1338590:intron 45.0%
TGACATCCACAATGTAGTGG+AGG + tig0002300:7126-7145 None:intergenic 45.0%
TGCTGACATCCACAATGTAG+TGG + tig0002300:7129-7148 None:intergenic 45.0%
ACCCCTTGAATATACCACTG+AGG - tig0002300:7175-7194 Msa1338590:intron 45.0%
CCCTCAGTGGTATATTCAAG+GGG + tig0002300:7179-7198 None:intergenic 45.0%
CCCCTTGAATATACCACTGA+GGG - tig0002300:7176-7195 Msa1338590:intron 45.0%
CCCCTCAGTGGTATATTCAA+GGG + tig0002300:7180-7199 None:intergenic 45.0%
CCCTTGAATATACCACTGAG+GGG - tig0002300:7177-7196 Msa1338590:intron 45.0%
CCTTGAATATACCACTGAGG+GGG - tig0002300:7178-7197 Msa1338590:intron 45.0%
GGATCATCAATTGATGCTGG+AGG + tig0002300:8009-8028 None:intergenic 45.0%
TAGCATGGTTGCTTCAGTGA+TGG + tig0002300:8030-8049 None:intergenic 45.0%
TGGAACAGACTGTCTCTAGA+CGG - tig0002300:8264-8283 Msa1338590:CDS 45.0%
GGGAGAAGTGGTTTGACTAA+AGG - tig0002300:8607-8626 Msa1338590:CDS 45.0%
TGGCAGCATACGAAATGTGT+GGG + tig0002300:8682-8701 None:intergenic 45.0%
TTGGCAGCATACGAAATGTG+TGG + tig0002300:8683-8702 None:intergenic 45.0%
!! AATAATATTAGTATATAATA+GGG + tig0002300:8857-8876 None:intergenic 5.0%
!! AAATAATATTAGTATATAAT+AGG + tig0002300:8858-8877 None:intergenic 5.0%
!! TATTATATACTAATATTATT+TGG - tig0002300:8857-8876 Msa1338590:five_prime_UTR 5.0%
AAAACCGTTCAAGCTGCCAC+AGG - tig0002300:5262-5281 Msa1338590:three_prime_UTR 50.0%
TGAACCTGTGGCAGCTTGAA+CGG + tig0002300:5269-5288 None:intergenic 50.0%
!! TGGCTATGAGAGCCTTGTTG+AGG - tig0002300:5383-5402 Msa1338590:three_prime_UTR 50.0%
CCATAGTAGCTGCCTCAACA+AGG + tig0002300:5398-5417 None:intergenic 50.0%
CCTTGTTGAGGCAGCTACTA+TGG - tig0002300:5395-5414 Msa1338590:three_prime_UTR 50.0%
! TTGTATGGTTCGGCGCCAAT+AGG - tig0002300:6582-6601 Msa1338590:intron 50.0%
TCTGGGTATGCCAGTCAACA+TGG - tig0002300:6937-6956 Msa1338590:intron 50.0%
CCCCCTCAGTGGTATATTCA+AGG + tig0002300:7181-7200 None:intergenic 50.0%
TTGCAAATTTGCCCCCTCAG+TGG + tig0002300:7192-7211 None:intergenic 50.0%
AGGGATCACGCCTCATACAT+TGG + tig0002300:7353-7372 None:intergenic 50.0%
GAGGAATGGGCGGAAAACAA+GGG + tig0002300:7524-7543 None:intergenic 50.0%
AGAGGAATGGGCGGAAAACA+AGG + tig0002300:7525-7544 None:intergenic 50.0%
CAGACTGTCTCTAGACGGTA+TGG - tig0002300:8269-8288 Msa1338590:CDS 50.0%
CTGTCTCTAGACGGTATGGA+TGG - tig0002300:8273-8292 Msa1338590:CDS 50.0%
!! TGTAGGCTTTAAGGGCAGCA+AGG - tig0002300:8636-8655 Msa1338590:CDS 50.0%
TTGGTTACTTGGGCCATCCG+AGG - tig0002300:5668-5687 Msa1338590:intron 55.0%
GGGTGGTCTGCCAACAGAAA+TGG + tig0002300:7504-7523 None:intergenic 55.0%
GAATGGGCGGAAAACAAGGG+TGG + tig0002300:7521-7540 None:intergenic 55.0%
!! GGCTTTAAGGGCAGCAAGGA+TGG - tig0002300:8640-8659 Msa1338590:CDS 55.0%
AGGAGAGTGGCGTAGCCGTA+AGG + tig0002300:6724-6743 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0002300 gene 4869 8882 4869 ID=Msa1338590;Name=Msa1338590
tig0002300 mRNA 4869 8882 4869 ID=Msa1338590-mRNA-1;Parent=Msa1338590;Name=Msa1338590-mRNA-1;_AED=0.15;_eAED=0.15;_QI=180|0.66|1|1|1|1|4|572|177
tig0002300 exon 4869 5506 4869 ID=Msa1338590-mRNA-1:exon:1732;Parent=Msa1338590-mRNA-1
tig0002300 exon 8062 8154 8062 ID=Msa1338590-mRNA-1:exon:1731;Parent=Msa1338590-mRNA-1
tig0002300 exon 8248 8387 8248 ID=Msa1338590-mRNA-1:exon:1730;Parent=Msa1338590-mRNA-1
tig0002300 exon 8468 8882 8468 ID=Msa1338590-mRNA-1:exon:1729;Parent=Msa1338590-mRNA-1
tig0002300 five_prime_UTR 8703 8882 8703 ID=Msa1338590-mRNA-1:five_prime_utr;Parent=Msa1338590-mRNA-1
tig0002300 CDS 8468 8702 8468 ID=Msa1338590-mRNA-1:cds;Parent=Msa1338590-mRNA-1
tig0002300 CDS 8248 8387 8248 ID=Msa1338590-mRNA-1:cds;Parent=Msa1338590-mRNA-1
tig0002300 CDS 8062 8154 8062 ID=Msa1338590-mRNA-1:cds;Parent=Msa1338590-mRNA-1
tig0002300 CDS 5441 5506 5441 ID=Msa1338590-mRNA-1:cds;Parent=Msa1338590-mRNA-1
tig0002300 three_prime_UTR 4869 5440 4869 ID=Msa1338590-mRNA-1:three_prime_utr;Parent=Msa1338590-mRNA-1
Gene Sequence

>Msa1338590

ATGGAAACTAATGTTTTCAGGCAGAACAGAATTTCAACACTAACTTCAACTCACTACAACCTCATCAAACATAAACCTCAACATCCAACTTCTATAGTTGCCGTGCTTAGAAAGCCTTCAAATCATGACATTACAGAAGAAACAGCAAAAAGTACTACTACTAATGTCTACAAAGATAATTGGTTTGATCTCATAGCAATAAACCATTTATCAAAAACCGTTCAAGCTGCCACAGGACTCAGAAACAATAAGAGTGGCTATGAGAGCCTTGTTGAGGCAGCTACTATGGCAAAACAGAAGTTTAATGCTATTCAACAACAAGAGGTTACCATTCAAGCTCTTGATAGACTCTTTCCACAGTTTGTATTTGCATTAATAAAGAAACAACCACTACCACCTAAATTTACAAGGGAATTTTTTGCAATTATCACCACTATGTTCTTTACTTGGTTACTTGGGCCATCCGAGGCAAGGCATATAAAAGTCATGGAACAGACTGTCTCTAGACGGTATGGATGGAAGAAGTCATTTTAG

Protein sequence

>Msa1338590

METNVFRQNRISTLTSTHYNLIKHKPQHPTSIVAVLRKPSNHDITEETAKSTTTNVYKDNWFDLIAINHLSKTVQAATGLRNNKSGYESLVEAATMAKQKFNAIQQQEVTIQALDRLFPQFVFALIKKQPLPPKFTREFFAIITTMFFTWLLGPSEARHIKVMEQTVSRRYGWKKSF*