AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1108140


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1108140 MtrunA17_Chr7g0241731 95.367 259 11 1 1 258 1 259 5.99e-177 487
Msa1108140 MtrunA17_Chr4g0005861 57.708 253 93 6 2 240 13 265 7.07e-87 259
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1108140 AT3G09050.1 60.417 192 74 2 50 241 56 245 1.94e-76 233

Find 86 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATTTATCTATTGTGAATA+TGG 0.126583 7_3:+50777933 None:intergenic
TAATCCAGTTACTCAGATTT+TGG 0.204535 7_3:+50776557 None:intergenic
TCTGCATACTTAACTCAATT+TGG 0.207885 7_3:-50777351 Msa1108140:CDS
GTGTTTGAAGCGTAACAATT+TGG 0.228424 7_3:+50777409 None:intergenic
GTTTACAATGGATAACATAA+TGG 0.286820 7_3:-50777727 Msa1108140:five_prime_UTR
TTATGTGTAGCTTATCAAAT+TGG 0.299000 7_3:-50776394 Msa1108140:three_prime_UTR
AATGTTTACCTCTTCTTCAT+TGG 0.306206 7_3:-50776925 Msa1108140:CDS
TGTGTTAACAACAAGTATTT+TGG 0.307091 7_3:+50777699 None:intergenic
TGTTATTTGATGCAAGCTTA+TGG 0.314190 7_3:-50776714 Msa1108140:three_prime_UTR
TTATTATTATCTAAACTAAA+AGG 0.316030 7_3:-50777793 Msa1108140:five_prime_UTR
ACCACCAAAATCTGAGTAAC+TGG 0.323671 7_3:-50776561 Msa1108140:three_prime_UTR
TTAGTTTAGATAATAATAAT+AGG 0.332594 7_3:+50777797 None:intergenic
GCATCAACAACAGAAGATAT+TGG 0.346985 7_3:-50776598 Msa1108140:three_prime_UTR
CCAAGTTGTAAGATTATACT+TGG 0.358332 7_3:+50776650 None:intergenic
TAAAGGCTGGTAGCGGAATC+AGG 0.365890 7_3:-50776951 Msa1108140:CDS
GTTGTTAACACACTTAAGTT+TGG 0.369619 7_3:-50777688 Msa1108140:five_prime_UTR
TGTTTGAAGCGTAACAATTT+GGG 0.372050 7_3:+50777410 None:intergenic
ATTATCATGCAGATTTCCTT+TGG 0.372621 7_3:-50776620 Msa1108140:three_prime_UTR
TTTACAATGGATAACATAAT+GGG 0.378203 7_3:-50777726 Msa1108140:five_prime_UTR
CTTGATGTTGTTCAGTTTGA+AGG 0.387068 7_3:+50777551 None:intergenic
GAAATCTGCATGATAATATC+AGG 0.387977 7_3:+50776626 None:intergenic
TTGCGTCGCCTTCGACTGAT+TGG 0.388513 7_3:-50776873 Msa1108140:CDS
GATTTATCTATTGTGAATAT+GGG 0.398080 7_3:+50777934 None:intergenic
CAAATTGGTGCATCAATCAT+AGG 0.415604 7_3:-50776379 Msa1108140:three_prime_UTR
TTCATTGTTGGTCTTTCTTG+TGG 0.426680 7_3:+50776765 None:intergenic
CCAAGTATAATCTTACAACT+TGG 0.429981 7_3:-50776650 Msa1108140:three_prime_UTR
AACGCCGAGTTTGAAAAGAT+TGG 0.433296 7_3:-50777318 Msa1108140:CDS
AGCGGAGTTTGAAGTTCAAA+TGG 0.433795 7_3:-50777085 Msa1108140:CDS
TTCTCAAGGTACATTTCTAA+AGG 0.441899 7_3:+50776471 None:intergenic
TGTGTCTCTGCAAGTCCAAT+GGG 0.442284 7_3:-50777485 Msa1108140:CDS
CAGTTTGAAGGAAGGATGTA+GGG 0.450731 7_3:+50777563 None:intergenic
TCCGCTACCAGCCTTTAGTC+TGG 0.451103 7_3:+50776957 None:intergenic
ATGTTAAACTGAGGGAGAAA+GGG 0.456833 7_3:+50777653 None:intergenic
TCAGTTTGAAGGAAGGATGT+AGG 0.456859 7_3:+50777562 None:intergenic
ATGGAAAACGGCAGAAATGA+AGG 0.459129 7_3:-50777066 Msa1108140:CDS
TTGTGTCTCTGCAAGTCCAA+TGG 0.459395 7_3:-50777486 Msa1108140:CDS
CTTTAAGAGCCTCAGAAAGA+AGG 0.460912 7_3:-50777037 Msa1108140:CDS
TATGTTAAACTGAGGGAGAA+AGG 0.470292 7_3:+50777652 None:intergenic
TTTCTTGTATCTCCTGGTTG+AGG 0.476098 7_3:+50777447 None:intergenic
GCAAACTGCAGGCATTCCCT+TGG 0.479862 7_3:-50776231 Msa1108140:three_prime_UTR
ATTCCTCGAATTCTAGCATC+TGG 0.480236 7_3:+50777154 None:intergenic
TTTGAAGTTCAAATGGAAAA+CGG 0.485912 7_3:-50777078 Msa1108140:CDS
GTCCACATCTTTGTTTACAA+TGG 0.489853 7_3:-50777739 Msa1108140:five_prime_UTR
GAAAACAACCAACTCATGAA+TGG 0.495783 7_3:-50776317 Msa1108140:three_prime_UTR
TTATCTAAACTAAAAGGTAG+TGG 0.499338 7_3:-50777787 Msa1108140:five_prime_UTR
TTGTATAGTTATTTACATGA+TGG 0.511903 7_3:+50776426 None:intergenic
GCCACAGGCCATTCATGAGT+TGG 0.521464 7_3:+50776309 None:intergenic
CAAACTGCAGGCATTCCCTT+GGG 0.522422 7_3:-50776230 None:intergenic
ATATCCACTGAAGGGTAGGT+TGG 0.524297 7_3:-50777826 Msa1108140:intron
AATTTGATAAGCTACACATA+AGG 0.524582 7_3:+50776396 None:intergenic
AAACTACTGTAAAGGTCAGC+AGG 0.526715 7_3:+50776902 None:intergenic
ATCTAGATATTCTGTAAGAC+GGG 0.527164 7_3:+50777380 None:intergenic
ATCTGCAGAAATTAACAGAC+AGG 0.528683 7_3:-50777133 Msa1108140:CDS
AGCTTGAGAATCAGACCCAT+TGG 0.534125 7_3:+50777470 None:intergenic
GAGCCAGATGCTAGAATTCG+AGG 0.536260 7_3:-50777157 Msa1108140:CDS
TCTTCTGTTGTTGATGCCAA+AGG 0.541580 7_3:+50776604 None:intergenic
AATAGAATAAACTACTGTAA+AGG 0.541708 7_3:+50776894 None:intergenic
TAAAGATGTCACCAGACTAA+AGG 0.542082 7_3:-50776968 Msa1108140:CDS
AGCAATCATCTTCATAACAA+TGG 0.553500 7_3:+50777593 None:intergenic
TGTTAAACTGAGGGAGAAAG+GGG 0.556541 7_3:+50777654 None:intergenic
GATGCAAATTTAGCTTCTCA+AGG 0.558143 7_3:+50776457 None:intergenic
TTTAGACAACTGCAAACTGC+AGG 0.560060 7_3:-50776242 Msa1108140:three_prime_UTR
GATTCTCAAGCTCCTCAACC+AGG 0.562806 7_3:-50777459 Msa1108140:CDS
CATCTAGATATTCTGTAAGA+CGG 0.566295 7_3:+50777379 None:intergenic
AGAGCGCGAAAATGAATTAG+CGG 0.567801 7_3:-50777103 Msa1108140:CDS
AAGAAAGACCAACAATGAAG+AGG 0.568026 7_3:-50776761 Msa1108140:CDS
GTTTAGATAATAATAATAGG+AGG 0.568405 7_3:+50777800 None:intergenic
TTAACAGATAACAGCGAACA+TGG 0.573660 7_3:-50777181 Msa1108140:intron
ACCAGACTAAAGGCTGGTAG+CGG 0.574115 7_3:-50776958 Msa1108140:CDS
CAAGTATAATCTTACAACTT+GGG 0.575866 7_3:-50776649 Msa1108140:three_prime_UTR
ATGGAAGTATGTATTTGCAA+AGG 0.577178 7_3:+50777612 None:intergenic
TCAGCAGGCCAATGAAGAAG+AGG 0.579281 7_3:+50776917 None:intergenic
CAACAGGTACCTTCTTTCTG+AGG 0.582699 7_3:+50777028 None:intergenic
AAAGAAATATGTTAAACTGA+GGG 0.587300 7_3:+50777645 None:intergenic
ATTTATCTATTGTGAATATG+GGG 0.590515 7_3:+50777935 None:intergenic
CAAGTTGTAAGATTATACTT+GGG 0.590751 7_3:+50776651 None:intergenic
AAAAGAAATATGTTAAACTG+AGG 0.593006 7_3:+50777644 None:intergenic
ATCCATTGTAAACAAAGATG+TGG 0.596047 7_3:+50777737 None:intergenic
ATCATGTAAATAACTATACA+AGG 0.596514 7_3:-50776424 Msa1108140:three_prime_UTR
GATGTCACCAGACTAAAGGC+TGG 0.604550 7_3:-50776964 Msa1108140:CDS
TGGAAAACGGCAGAAATGAA+GGG 0.610002 7_3:-50777065 Msa1108140:CDS
ATGTTGTTCAGTTTGAAGGA+AGG 0.625091 7_3:+50777555 None:intergenic
TGATAAAGCAAAAGCCAAAG+AGG 0.625476 7_3:-50777004 Msa1108140:CDS
TAAAGCAAAAGCCAAAGAGG+AGG 0.659588 7_3:-50777001 Msa1108140:CDS
ACAATGGATAACATAATGGG+AGG 0.686738 7_3:-50777723 Msa1108140:five_prime_UTR
ACCAACTCATGAATGGCCTG+TGG 0.696406 7_3:-50776310 Msa1108140:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAGTTTAGATAATAATAAT+AGG + chr7_3:50776371-50776390 None:intergenic 10.0%
!! TTATTATTATCTAAACTAAA+AGG - chr7_3:50776372-50776391 Msa1108140:three_prime_UTR 10.0%
!! TTAGTTTAGATAATAATAAT+AGG + chr7_3:50776371-50776390 None:intergenic 10.0%
!! TTATTATTATCTAAACTAAA+AGG - chr7_3:50776372-50776391 Msa1108140:three_prime_UTR 10.0%
!!! TTTTTTATTTACATTTGACA+TGG + chr7_3:50776940-50776959 None:intergenic 15.0%
!! AAATACAAAATGAATATAAG+AGG + chr7_3:50776966-50776985 None:intergenic 15.0%
!!! TTTTTTATTTACATTTGACA+TGG + chr7_3:50776940-50776959 None:intergenic 15.0%
!! AAATACAAAATGAATATAAG+AGG + chr7_3:50776966-50776985 None:intergenic 15.0%
!! GATTTATCTATTGTGAATAT+GGG + chr7_3:50776234-50776253 None:intergenic 20.0%
!! TGATTTATCTATTGTGAATA+TGG + chr7_3:50776235-50776254 None:intergenic 20.0%
!! GTTTAGATAATAATAATAGG+AGG + chr7_3:50776368-50776387 None:intergenic 20.0%
!! TTTACAATGGATAACATAAT+GGG - chr7_3:50776439-50776458 Msa1108140:three_prime_UTR 20.0%
!! AAAGAAATATGTTAAACTGA+GGG + chr7_3:50776523-50776542 None:intergenic 20.0%
!! AAAAGAAATATGTTAAACTG+AGG + chr7_3:50776524-50776543 None:intergenic 20.0%
!! AATAGAATAAACTACTGTAA+AGG + chr7_3:50777274-50777293 None:intergenic 20.0%
!! TTGTATAGTTATTTACATGA+TGG + chr7_3:50777742-50777761 None:intergenic 20.0%
!! ATCATGTAAATAACTATACA+AGG - chr7_3:50777741-50777760 Msa1108140:five_prime_UTR 20.0%
!!! AGTAGTTTGTTTTTGTTTTT+GGG + chr7_3:50777896-50777915 None:intergenic 20.0%
!! GATTTATCTATTGTGAATAT+GGG + chr7_3:50776234-50776253 None:intergenic 20.0%
!! TGATTTATCTATTGTGAATA+TGG + chr7_3:50776235-50776254 None:intergenic 20.0%
!! GTTTAGATAATAATAATAGG+AGG + chr7_3:50776368-50776387 None:intergenic 20.0%
!! TTTACAATGGATAACATAAT+GGG - chr7_3:50776439-50776458 Msa1108140:three_prime_UTR 20.0%
!! AAAGAAATATGTTAAACTGA+GGG + chr7_3:50776523-50776542 None:intergenic 20.0%
!! AAAAGAAATATGTTAAACTG+AGG + chr7_3:50776524-50776543 None:intergenic 20.0%
!! AATAGAATAAACTACTGTAA+AGG + chr7_3:50777274-50777293 None:intergenic 20.0%
!! TTGTATAGTTATTTACATGA+TGG + chr7_3:50777742-50777761 None:intergenic 20.0%
!! ATCATGTAAATAACTATACA+AGG - chr7_3:50777741-50777760 Msa1108140:five_prime_UTR 20.0%
!!! AGTAGTTTGTTTTTGTTTTT+GGG + chr7_3:50777896-50777915 None:intergenic 20.0%
! TTCAGTGGATATTTGTAATT+TGG + chr7_3:50776331-50776350 None:intergenic 25.0%
! AAATTACAAATATCCACTGA+AGG - chr7_3:50776330-50776349 Msa1108140:three_prime_UTR 25.0%
! AATTACAAATATCCACTGAA+GGG - chr7_3:50776331-50776350 Msa1108140:three_prime_UTR 25.0%
! TTATCTAAACTAAAAGGTAG+TGG - chr7_3:50776378-50776397 Msa1108140:three_prime_UTR 25.0%
! GTTTACAATGGATAACATAA+TGG - chr7_3:50776438-50776457 Msa1108140:three_prime_UTR 25.0%
!! TGTGTTAACAACAAGTATTT+TGG + chr7_3:50776469-50776488 None:intergenic 25.0%
!! TTTGAAGTTCAAATGGAAAA+CGG - chr7_3:50777087-50777106 Msa1108140:CDS 25.0%
! CAAGTTGTAAGATTATACTT+GGG + chr7_3:50777517-50777536 None:intergenic 25.0%
! CAAGTATAATCTTACAACTT+GGG - chr7_3:50777516-50777535 Msa1108140:CDS 25.0%
!!! TGTTTTTTCTGTATTGACAT+AGG + chr7_3:50777663-50777682 None:intergenic 25.0%
! AATTTGATAAGCTACACATA+AGG + chr7_3:50777772-50777791 None:intergenic 25.0%
! TTATGTGTAGCTTATCAAAT+TGG - chr7_3:50777771-50777790 Msa1108140:five_prime_UTR 25.0%
!!! GTTGTTTTCATTCATACATT+GGG + chr7_3:50777837-50777856 None:intergenic 25.0%
!!! GAGTAGTTTGTTTTTGTTTT+TGG + chr7_3:50777897-50777916 None:intergenic 25.0%
! TTCAGTGGATATTTGTAATT+TGG + chr7_3:50776331-50776350 None:intergenic 25.0%
! AAATTACAAATATCCACTGA+AGG - chr7_3:50776330-50776349 Msa1108140:three_prime_UTR 25.0%
! AATTACAAATATCCACTGAA+GGG - chr7_3:50776331-50776350 Msa1108140:three_prime_UTR 25.0%
! TTATCTAAACTAAAAGGTAG+TGG - chr7_3:50776378-50776397 Msa1108140:three_prime_UTR 25.0%
! GTTTACAATGGATAACATAA+TGG - chr7_3:50776438-50776457 Msa1108140:three_prime_UTR 25.0%
!! TGTGTTAACAACAAGTATTT+TGG + chr7_3:50776469-50776488 None:intergenic 25.0%
!! TTTGAAGTTCAAATGGAAAA+CGG - chr7_3:50777087-50777106 Msa1108140:CDS 25.0%
! CAAGTTGTAAGATTATACTT+GGG + chr7_3:50777517-50777536 None:intergenic 25.0%
! CAAGTATAATCTTACAACTT+GGG - chr7_3:50777516-50777535 Msa1108140:CDS 25.0%
!!! TGTTTTTTCTGTATTGACAT+AGG + chr7_3:50777663-50777682 None:intergenic 25.0%
! AATTTGATAAGCTACACATA+AGG + chr7_3:50777772-50777791 None:intergenic 25.0%
! TTATGTGTAGCTTATCAAAT+TGG - chr7_3:50777771-50777790 Msa1108140:five_prime_UTR 25.0%
!!! GTTGTTTTCATTCATACATT+GGG + chr7_3:50777837-50777856 None:intergenic 25.0%
!!! GAGTAGTTTGTTTTTGTTTT+TGG + chr7_3:50777897-50777916 None:intergenic 25.0%
ATCCATTGTAAACAAAGATG+TGG + chr7_3:50776431-50776450 None:intergenic 30.0%
GTTGTTAACACACTTAAGTT+TGG - chr7_3:50776477-50776496 Msa1108140:three_prime_UTR 30.0%
! ATGGAAGTATGTATTTGCAA+AGG + chr7_3:50776556-50776575 None:intergenic 30.0%
AGCAATCATCTTCATAACAA+TGG + chr7_3:50776575-50776594 None:intergenic 30.0%
! TGTTTGAAGCGTAACAATTT+GGG + chr7_3:50776758-50776777 None:intergenic 30.0%
ATCTAGATATTCTGTAAGAC+GGG + chr7_3:50776788-50776807 None:intergenic 30.0%
CATCTAGATATTCTGTAAGA+CGG + chr7_3:50776789-50776808 None:intergenic 30.0%
TCTGCATACTTAACTCAATT+TGG - chr7_3:50776814-50776833 Msa1108140:CDS 30.0%
! TTCTCCAATCTTTTCAAACT+CGG + chr7_3:50776854-50776873 None:intergenic 30.0%
AATGTTTACCTCTTCTTCAT+TGG - chr7_3:50777240-50777259 Msa1108140:intron 30.0%
!! TTTGTTTTCCTCTTCATTGT+TGG + chr7_3:50777415-50777434 None:intergenic 30.0%
! TGTTATTTGATGCAAGCTTA+TGG - chr7_3:50777451-50777470 Msa1108140:CDS 30.0%
CCAAGTTGTAAGATTATACT+TGG + chr7_3:50777518-50777537 None:intergenic 30.0%
CCAAGTATAATCTTACAACT+TGG - chr7_3:50777515-50777534 Msa1108140:CDS 30.0%
GAAATCTGCATGATAATATC+AGG + chr7_3:50777542-50777561 None:intergenic 30.0%
ATTATCATGCAGATTTCCTT+TGG - chr7_3:50777545-50777564 Msa1108140:CDS 30.0%
! TAATCCAGTTACTCAGATTT+TGG + chr7_3:50777611-50777630 None:intergenic 30.0%
TTCTCAAGGTACATTTCTAA+AGG + chr7_3:50777697-50777716 None:intergenic 30.0%
!! GGTTGTTTTCATTCATACAT+TGG + chr7_3:50777838-50777857 None:intergenic 30.0%
!!! GAAATTTTTTAATCTGCCAC+AGG + chr7_3:50777874-50777893 None:intergenic 30.0%
ATCCATTGTAAACAAAGATG+TGG + chr7_3:50776431-50776450 None:intergenic 30.0%
GTTGTTAACACACTTAAGTT+TGG - chr7_3:50776477-50776496 Msa1108140:three_prime_UTR 30.0%
! ATGGAAGTATGTATTTGCAA+AGG + chr7_3:50776556-50776575 None:intergenic 30.0%
AGCAATCATCTTCATAACAA+TGG + chr7_3:50776575-50776594 None:intergenic 30.0%
! TGTTTGAAGCGTAACAATTT+GGG + chr7_3:50776758-50776777 None:intergenic 30.0%
ATCTAGATATTCTGTAAGAC+GGG + chr7_3:50776788-50776807 None:intergenic 30.0%
CATCTAGATATTCTGTAAGA+CGG + chr7_3:50776789-50776808 None:intergenic 30.0%
TCTGCATACTTAACTCAATT+TGG - chr7_3:50776814-50776833 Msa1108140:CDS 30.0%
! TTCTCCAATCTTTTCAAACT+CGG + chr7_3:50776854-50776873 None:intergenic 30.0%
AATGTTTACCTCTTCTTCAT+TGG - chr7_3:50777240-50777259 Msa1108140:intron 30.0%
!! TTTGTTTTCCTCTTCATTGT+TGG + chr7_3:50777415-50777434 None:intergenic 30.0%
! TGTTATTTGATGCAAGCTTA+TGG - chr7_3:50777451-50777470 Msa1108140:CDS 30.0%
CCAAGTTGTAAGATTATACT+TGG + chr7_3:50777518-50777537 None:intergenic 30.0%
CCAAGTATAATCTTACAACT+TGG - chr7_3:50777515-50777534 Msa1108140:CDS 30.0%
GAAATCTGCATGATAATATC+AGG + chr7_3:50777542-50777561 None:intergenic 30.0%
ATTATCATGCAGATTTCCTT+TGG - chr7_3:50777545-50777564 Msa1108140:CDS 30.0%
! TAATCCAGTTACTCAGATTT+TGG + chr7_3:50777611-50777630 None:intergenic 30.0%
TTCTCAAGGTACATTTCTAA+AGG + chr7_3:50777697-50777716 None:intergenic 30.0%
!! GGTTGTTTTCATTCATACAT+TGG + chr7_3:50777838-50777857 None:intergenic 30.0%
!!! GAAATTTTTTAATCTGCCAC+AGG + chr7_3:50777874-50777893 None:intergenic 30.0%
! GTCCACATCTTTGTTTACAA+TGG - chr7_3:50776426-50776445 Msa1108140:three_prime_UTR 35.0%
! ACAATGGATAACATAATGGG+AGG - chr7_3:50776442-50776461 Msa1108140:three_prime_UTR 35.0%
ATGTTAAACTGAGGGAGAAA+GGG + chr7_3:50776515-50776534 None:intergenic 35.0%
TATGTTAAACTGAGGGAGAA+AGG + chr7_3:50776516-50776535 None:intergenic 35.0%
ATGTTGTTCAGTTTGAAGGA+AGG + chr7_3:50776613-50776632 None:intergenic 35.0%
CTTGATGTTGTTCAGTTTGA+AGG + chr7_3:50776617-50776636 None:intergenic 35.0%
!!! TCTTGTTTTCTTGTATCTCC+TGG + chr7_3:50776727-50776746 None:intergenic 35.0%
! GTGTTTGAAGCGTAACAATT+TGG + chr7_3:50776759-50776778 None:intergenic 35.0%
TTAACAGATAACAGCGAACA+TGG - chr7_3:50776984-50777003 Msa1108140:CDS 35.0%
ATCTGCAGAAATTAACAGAC+AGG - chr7_3:50777032-50777051 Msa1108140:CDS 35.0%
! GCTTTTGCTTTATCAACAAC+AGG + chr7_3:50777156-50777175 None:intergenic 35.0%
TGATAAAGCAAAAGCCAAAG+AGG - chr7_3:50777161-50777180 Msa1108140:CDS 35.0%
!!! AATTTTTTCTGCCTCCTCTT+TGG + chr7_3:50777178-50777197 None:intergenic 35.0%
TAAAGATGTCACCAGACTAA+AGG - chr7_3:50777197-50777216 Msa1108140:intron 35.0%
! TGGAGAAAAGTTGCAGTTTT+TGG - chr7_3:50777312-50777331 Msa1108140:CDS 35.0%
!!! AGTTTTTGGAGCAATTCTTG+TGG - chr7_3:50777326-50777345 Msa1108140:CDS 35.0%
!! TTCATTGTTGGTCTTTCTTG+TGG + chr7_3:50777403-50777422 None:intergenic 35.0%
AAGAAAGACCAACAATGAAG+AGG - chr7_3:50777404-50777423 Msa1108140:CDS 35.0%
GCATCAACAACAGAAGATAT+TGG - chr7_3:50777567-50777586 Msa1108140:CDS 35.0%
! GATGCAAATTTAGCTTCTCA+AGG + chr7_3:50777711-50777730 None:intergenic 35.0%
CAAATTGGTGCATCAATCAT+AGG - chr7_3:50777786-50777805 Msa1108140:five_prime_UTR 35.0%
GAAAACAACCAACTCATGAA+TGG - chr7_3:50777848-50777867 Msa1108140:intron 35.0%
! GTCCACATCTTTGTTTACAA+TGG - chr7_3:50776426-50776445 Msa1108140:three_prime_UTR 35.0%
! ACAATGGATAACATAATGGG+AGG - chr7_3:50776442-50776461 Msa1108140:three_prime_UTR 35.0%
ATGTTAAACTGAGGGAGAAA+GGG + chr7_3:50776515-50776534 None:intergenic 35.0%
TATGTTAAACTGAGGGAGAA+AGG + chr7_3:50776516-50776535 None:intergenic 35.0%
ATGTTGTTCAGTTTGAAGGA+AGG + chr7_3:50776613-50776632 None:intergenic 35.0%
CTTGATGTTGTTCAGTTTGA+AGG + chr7_3:50776617-50776636 None:intergenic 35.0%
!!! TCTTGTTTTCTTGTATCTCC+TGG + chr7_3:50776727-50776746 None:intergenic 35.0%
! GTGTTTGAAGCGTAACAATT+TGG + chr7_3:50776759-50776778 None:intergenic 35.0%
TTAACAGATAACAGCGAACA+TGG - chr7_3:50776984-50777003 Msa1108140:CDS 35.0%
ATCTGCAGAAATTAACAGAC+AGG - chr7_3:50777032-50777051 Msa1108140:CDS 35.0%
! GCTTTTGCTTTATCAACAAC+AGG + chr7_3:50777156-50777175 None:intergenic 35.0%
TGATAAAGCAAAAGCCAAAG+AGG - chr7_3:50777161-50777180 Msa1108140:CDS 35.0%
!!! AATTTTTTCTGCCTCCTCTT+TGG + chr7_3:50777178-50777197 None:intergenic 35.0%
TAAAGATGTCACCAGACTAA+AGG - chr7_3:50777197-50777216 Msa1108140:intron 35.0%
! TGGAGAAAAGTTGCAGTTTT+TGG - chr7_3:50777312-50777331 Msa1108140:CDS 35.0%
!!! AGTTTTTGGAGCAATTCTTG+TGG - chr7_3:50777326-50777345 Msa1108140:CDS 35.0%
!! TTCATTGTTGGTCTTTCTTG+TGG + chr7_3:50777403-50777422 None:intergenic 35.0%
AAGAAAGACCAACAATGAAG+AGG - chr7_3:50777404-50777423 Msa1108140:CDS 35.0%
GCATCAACAACAGAAGATAT+TGG - chr7_3:50777567-50777586 Msa1108140:CDS 35.0%
! GATGCAAATTTAGCTTCTCA+AGG + chr7_3:50777711-50777730 None:intergenic 35.0%
CAAATTGGTGCATCAATCAT+AGG - chr7_3:50777786-50777805 Msa1108140:five_prime_UTR 35.0%
GAAAACAACCAACTCATGAA+TGG - chr7_3:50777848-50777867 Msa1108140:intron 35.0%
ACAAATATCCACTGAAGGGT+AGG - chr7_3:50776335-50776354 Msa1108140:three_prime_UTR 40.0%
TGTTAAACTGAGGGAGAAAG+GGG + chr7_3:50776514-50776533 None:intergenic 40.0%
CAGTTTGAAGGAAGGATGTA+GGG + chr7_3:50776605-50776624 None:intergenic 40.0%
TCAGTTTGAAGGAAGGATGT+AGG + chr7_3:50776606-50776625 None:intergenic 40.0%
! TGTTGTGAAGTCTTTTGCAG+TGG + chr7_3:50776648-50776667 None:intergenic 40.0%
TTTCTTGTATCTCCTGGTTG+AGG + chr7_3:50776721-50776740 None:intergenic 40.0%
AACGCCGAGTTTGAAAAGAT+TGG - chr7_3:50776847-50776866 Msa1108140:CDS 40.0%
ATTCCTCGAATTCTAGCATC+TGG + chr7_3:50777014-50777033 None:intergenic 40.0%
AGAGCGCGAAAATGAATTAG+CGG - chr7_3:50777062-50777081 Msa1108140:CDS 40.0%
! AGCGGAGTTTGAAGTTCAAA+TGG - chr7_3:50777080-50777099 Msa1108140:CDS 40.0%
ATGGAAAACGGCAGAAATGA+AGG - chr7_3:50777099-50777118 Msa1108140:CDS 40.0%
TGGAAAACGGCAGAAATGAA+GGG - chr7_3:50777100-50777119 Msa1108140:CDS 40.0%
! CTTTAAGAGCCTCAGAAAGA+AGG - chr7_3:50777128-50777147 Msa1108140:CDS 40.0%
TAAAGCAAAAGCCAAAGAGG+AGG - chr7_3:50777164-50777183 Msa1108140:CDS 40.0%
AAACTACTGTAAAGGTCAGC+AGG + chr7_3:50777266-50777285 None:intergenic 40.0%
! ACTTTTCTCCAATCAGTCGA+AGG + chr7_3:50777303-50777322 None:intergenic 40.0%
TCTTCTGTTGTTGATGCCAA+AGG + chr7_3:50777564-50777583 None:intergenic 40.0%
ACCACCAAAATCTGAGTAAC+TGG - chr7_3:50777604-50777623 Msa1108140:exon 40.0%
! TCCAGTTACTCAGATTTTGG+TGG + chr7_3:50777608-50777627 None:intergenic 40.0%
TTTAGACAACTGCAAACTGC+AGG - chr7_3:50777923-50777942 Msa1108140:five_prime_UTR 40.0%
ACAAATATCCACTGAAGGGT+AGG - chr7_3:50776335-50776354 Msa1108140:three_prime_UTR 40.0%
TGTTAAACTGAGGGAGAAAG+GGG + chr7_3:50776514-50776533 None:intergenic 40.0%
CAGTTTGAAGGAAGGATGTA+GGG + chr7_3:50776605-50776624 None:intergenic 40.0%
TCAGTTTGAAGGAAGGATGT+AGG + chr7_3:50776606-50776625 None:intergenic 40.0%
! TGTTGTGAAGTCTTTTGCAG+TGG + chr7_3:50776648-50776667 None:intergenic 40.0%
TTTCTTGTATCTCCTGGTTG+AGG + chr7_3:50776721-50776740 None:intergenic 40.0%
AACGCCGAGTTTGAAAAGAT+TGG - chr7_3:50776847-50776866 Msa1108140:CDS 40.0%
ATTCCTCGAATTCTAGCATC+TGG + chr7_3:50777014-50777033 None:intergenic 40.0%
AGAGCGCGAAAATGAATTAG+CGG - chr7_3:50777062-50777081 Msa1108140:CDS 40.0%
! AGCGGAGTTTGAAGTTCAAA+TGG - chr7_3:50777080-50777099 Msa1108140:CDS 40.0%
ATGGAAAACGGCAGAAATGA+AGG - chr7_3:50777099-50777118 Msa1108140:CDS 40.0%
TGGAAAACGGCAGAAATGAA+GGG - chr7_3:50777100-50777119 Msa1108140:CDS 40.0%
! CTTTAAGAGCCTCAGAAAGA+AGG - chr7_3:50777128-50777147 Msa1108140:CDS 40.0%
TAAAGCAAAAGCCAAAGAGG+AGG - chr7_3:50777164-50777183 Msa1108140:CDS 40.0%
AAACTACTGTAAAGGTCAGC+AGG + chr7_3:50777266-50777285 None:intergenic 40.0%
! ACTTTTCTCCAATCAGTCGA+AGG + chr7_3:50777303-50777322 None:intergenic 40.0%
TCTTCTGTTGTTGATGCCAA+AGG + chr7_3:50777564-50777583 None:intergenic 40.0%
ACCACCAAAATCTGAGTAAC+TGG - chr7_3:50777604-50777623 Msa1108140:exon 40.0%
! TCCAGTTACTCAGATTTTGG+TGG + chr7_3:50777608-50777627 None:intergenic 40.0%
TTTAGACAACTGCAAACTGC+AGG - chr7_3:50777923-50777942 Msa1108140:five_prime_UTR 40.0%
ATATCCACTGAAGGGTAGGT+TGG - chr7_3:50776339-50776358 Msa1108140:three_prime_UTR 45.0%
TTGTGTCTCTGCAAGTCCAA+TGG - chr7_3:50776679-50776698 Msa1108140:three_prime_UTR 45.0%
TGTGTCTCTGCAAGTCCAAT+GGG - chr7_3:50776680-50776699 Msa1108140:three_prime_UTR 45.0%
AGCTTGAGAATCAGACCCAT+TGG + chr7_3:50776698-50776717 None:intergenic 45.0%
AAGTGGAAGCAAGCATACTC+TGG + chr7_3:50776908-50776927 None:intergenic 45.0%
TGACATGGATAGCTCGAAAG+TGG + chr7_3:50776925-50776944 None:intergenic 45.0%
CAACAGGTACCTTCTTTCTG+AGG + chr7_3:50777140-50777159 None:intergenic 45.0%
ATATCCACTGAAGGGTAGGT+TGG - chr7_3:50776339-50776358 Msa1108140:three_prime_UTR 45.0%
TTGTGTCTCTGCAAGTCCAA+TGG - chr7_3:50776679-50776698 Msa1108140:three_prime_UTR 45.0%
TGTGTCTCTGCAAGTCCAAT+GGG - chr7_3:50776680-50776699 Msa1108140:three_prime_UTR 45.0%
AGCTTGAGAATCAGACCCAT+TGG + chr7_3:50776698-50776717 None:intergenic 45.0%
AAGTGGAAGCAAGCATACTC+TGG + chr7_3:50776908-50776927 None:intergenic 45.0%
TGACATGGATAGCTCGAAAG+TGG + chr7_3:50776925-50776944 None:intergenic 45.0%
CAACAGGTACCTTCTTTCTG+AGG + chr7_3:50777140-50777159 None:intergenic 45.0%
GATTCCAACCTACCCTTCAG+TGG + chr7_3:50776346-50776365 None:intergenic 50.0%
GATTCTCAAGCTCCTCAACC+AGG - chr7_3:50776706-50776725 Msa1108140:three_prime_UTR 50.0%
GAGCCAGATGCTAGAATTCG+AGG - chr7_3:50777008-50777027 Msa1108140:CDS 50.0%
GATGTCACCAGACTAAAGGC+TGG - chr7_3:50777201-50777220 Msa1108140:intron 50.0%
ACCAGACTAAAGGCTGGTAG+CGG - chr7_3:50777207-50777226 Msa1108140:intron 50.0%
!! TAAAGGCTGGTAGCGGAATC+AGG - chr7_3:50777214-50777233 Msa1108140:intron 50.0%
TCAGCAGGCCAATGAAGAAG+AGG + chr7_3:50777251-50777270 None:intergenic 50.0%
ACCAACTCATGAATGGCCTG+TGG - chr7_3:50777855-50777874 Msa1108140:intron 50.0%
GATTCCAACCTACCCTTCAG+TGG + chr7_3:50776346-50776365 None:intergenic 50.0%
GATTCTCAAGCTCCTCAACC+AGG - chr7_3:50776706-50776725 Msa1108140:three_prime_UTR 50.0%
GAGCCAGATGCTAGAATTCG+AGG - chr7_3:50777008-50777027 Msa1108140:CDS 50.0%
GATGTCACCAGACTAAAGGC+TGG - chr7_3:50777201-50777220 Msa1108140:intron 50.0%
ACCAGACTAAAGGCTGGTAG+CGG - chr7_3:50777207-50777226 Msa1108140:intron 50.0%
!! TAAAGGCTGGTAGCGGAATC+AGG - chr7_3:50777214-50777233 Msa1108140:intron 50.0%
TCAGCAGGCCAATGAAGAAG+AGG + chr7_3:50777251-50777270 None:intergenic 50.0%
ACCAACTCATGAATGGCCTG+TGG - chr7_3:50777855-50777874 Msa1108140:intron 50.0%
TCCGCTACCAGCCTTTAGTC+TGG + chr7_3:50777211-50777230 None:intergenic 55.0%
TTGCGTCGCCTTCGACTGAT+TGG - chr7_3:50777292-50777311 Msa1108140:CDS 55.0%
GCCACAGGCCATTCATGAGT+TGG + chr7_3:50777859-50777878 None:intergenic 55.0%
GCAAACTGCAGGCATTCCCT+TGG - chr7_3:50777934-50777953 Msa1108140:five_prime_UTR 55.0%
TCCGCTACCAGCCTTTAGTC+TGG + chr7_3:50777211-50777230 None:intergenic 55.0%
TTGCGTCGCCTTCGACTGAT+TGG - chr7_3:50777292-50777311 Msa1108140:CDS 55.0%
GCCACAGGCCATTCATGAGT+TGG + chr7_3:50777859-50777878 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 50776231 50777956 50776231 ID=Msa1108140;Name=Msa1108140
chr7_3 mRNA 50776231 50777956 50776231 ID=Msa1108140-mRNA-1;Parent=Msa1108140;Name=Msa1108140-mRNA-1;_AED=0.02;_eAED=0.02;_QI=307|1|1|1|0.5|0.33|3|519|258
chr7_3 exon 50776231 50777196 50776231 ID=Msa1108140-mRNA-1:exon:10408;Parent=Msa1108140-mRNA-1
chr7_3 exon 50777278 50777835 50777278 ID=Msa1108140-mRNA-1:exon:10407;Parent=Msa1108140-mRNA-1
chr7_3 exon 50777878 50777956 50777878 ID=Msa1108140-mRNA-1:exon:10406;Parent=Msa1108140-mRNA-1
chr7_3 five_prime_UTR 50777878 50777956 50777878 ID=Msa1108140-mRNA-1:five_prime_utr;Parent=Msa1108140-mRNA-1
chr7_3 five_prime_UTR 50777608 50777835 50777608 ID=Msa1108140-mRNA-1:five_prime_utr;Parent=Msa1108140-mRNA-1
chr7_3 CDS 50777278 50777607 50777278 ID=Msa1108140-mRNA-1:cds;Parent=Msa1108140-mRNA-1
chr7_3 CDS 50776750 50777196 50776750 ID=Msa1108140-mRNA-1:cds;Parent=Msa1108140-mRNA-1
chr7_3 three_prime_UTR 50776231 50776749 50776231 ID=Msa1108140-mRNA-1:three_prime_utr;Parent=Msa1108140-mRNA-1
Gene Sequence

>Msa1108140

ATGAAGATGATTGCTCTCAAATCCCTACATCCTTCCTTCAAACTGAACAACATCAAGTGTAATATCCACTGCAAAAGACTTCACAACACATGTTATACTTTGTGTCTCTGCAAGTCCAATGGGTCTGATTCTCAAGCTCCTCAACCAGGAGATACAAGAAAACAAGAACTTCTAGCCCAAATTGTTACGCTTCAAACACGAAAAGCCCGTCTTACAGAATATCTAGATGAGAGATCTGCATACTTAACTCAATTTGGTGAAAAAGTAAACGCCGAGTTTGAAAAGATTGGAGAAGATGCACTCAAAGAATTAGATGAAGCTAGTGCCAGAATAACAGCGAACATGGAGAGCCAGATGCTAGAATTCGAGGAATCTGCAGAAATTAACAGACAGGAGATTCAAGAGCGCGAAAATGAATTAGCGGAGTTTGAAGTTCAAATGGAAAACGGCAGAAATGAAGGGCTGTTCTTTAAGAGCCTCAGAAAGAAGGTACCTGTTGTTGATAAAGCAAAAGCCAAAGAGGAGGCAGAAAAAATTAAAGATGTCACCAGACTAAAGGCTGGTAGCGGAATCAGGAAAAATGTTTACCTCTTCTTCATTGGCCTGCTGACCTTTACAGTAGTTTATTCTATTGCGTCGCCTTCGACTGATTGGAGAAAAGTTGCAGTTTTTGGAGCAATTCTTGTGGCTTTGACTTCTCAGTTCGTCTATGAACAAAACATGTCAGCACAAACTAGAACCACAAGAAAGACCAACAATGAAGAGGAAAACAAATGA

Protein sequence

>Msa1108140

MKMIALKSLHPSFKLNNIKCNIHCKRLHNTCYTLCLCKSNGSDSQAPQPGDTRKQELLAQIVTLQTRKARLTEYLDERSAYLTQFGEKVNAEFEKIGEDALKELDEASARITANMESQMLEFEESAEINRQEIQERENELAEFEVQMENGRNEGLFFKSLRKKVPVVDKAKAKEEAEKIKDVTRLKAGSGIRKNVYLFFIGLLTFTVVYSIASPSTDWRKVAVFGAILVALTSQFVYEQNMSAQTRTTRKTNNEEENK*