AlfalfaGEDB | Msa0395510

M. sativa cultivar zhongmu-4 / Msa0395510

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363
PFAM: PF12854.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0395510	XP_024634361.1	94.444	792	44	0	1	792	1	792	0.0	1576

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0395510	sp\|Q3E6Q1\|PPR32_ARATH	60.102	787	313	1	6	792	24	809	0.0	1013

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0395510	A0A396IK20	94.444	792	44	0	1	792	1	792	0.0	1576

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001460	Msa0395510	0.805752	1.147162e-49	-8.615850e-47
Msa0006700	Msa0395510	0.811634	6.347739e-51	-8.615850e-47
Msa0008850	Msa0395510	0.818465	1.932485e-52	-8.615850e-47
Msa0011720	Msa0395510	0.816714	4.796462e-52	-8.615850e-47
Msa0017120	Msa0395510	0.800788	1.222657e-48	-8.615850e-47
Msa0020520	Msa0395510	0.803522	3.349250e-49	-8.615850e-47
Msa0024680	Msa0395510	0.805373	1.377416e-49	-8.615850e-47
Msa0030000	Msa0395510	0.805206	1.493134e-49	-8.615850e-47
Msa0038350	Msa0395510	-0.807255	5.526675e-50	-8.615850e-47
Msa0043940	Msa0395510	0.801530	8.622245e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0395510	MtrunA17_Chr3g0081081	94.444	792	44	0	1	792	1	792	0.0	1576
Msa0395510	MtrunA17_Chr3g0081091	75.416	781	190	2	13	792	31	810	0.0	1222
Msa0395510	MtrunA17_Chr2g0296821	40.236	763	427	8	58	792	130	891	0.0	587
Msa0395510	MtrunA17_Chr2g0296821	33.415	407	255	8	187	584	56	455	5.65e-53	198
Msa0395510	MtrunA17_Chr2g0296821	25.397	252	151	5	5	230	390	630	9.96e-17	85.1
Msa0395510	MtrunA17_Chr4g0003921	41.610	733	426	2	58	790	140	870	0.0	577
Msa0395510	MtrunA17_Chr4g0003921	35.570	298	190	2	254	550	134	430	2.71e-51	193
Msa0395510	MtrunA17_Chr4g0003921	32.534	292	195	2	48	339	332	621	9.80e-36	145
Msa0395510	MtrunA17_Chr4g0003921	30.420	286	185	7	353	631	132	410	1.35e-25	113
Msa0395510	MtrunA17_Chr8g0379211	38.551	773	469	4	24	792	99	869	0.0	576

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0395510	AT1G11290.1	60.102	787	313	1	6	792	24	809	0.0	1013
Msa0395510	AT4G30700.1	38.365	795	479	7	1	792	6	792	0.0	582
Msa0395510	AT4G18750.1	37.516	773	479	3	24	792	99	871	0.0	580
Msa0395510	AT4G18750.1	27.354	446	306	6	218	654	93	529	1.74e-46	179
Msa0395510	AT3G57430.1	41.284	763	409	12	58	792	139	890	0.0	580
Msa0395510	AT3G57430.1	29.799	547	357	11	89	616	68	606	1.15e-64	233
Msa0395510	AT3G57430.1	31.235	413	272	7	187	591	65	473	3.81e-54	202
Msa0395510	AT3G57430.1	28.701	331	221	3	21	339	310	637	2.00e-42	167
Msa0395510	AT5G16860.1	37.105	822	464	9	22	792	31	850	0.0	565
Msa0395510	AT5G16860.1	25.845	414	244	15	1	395	357	726	2.75e-23	106

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Find 156 sgRNAs with CRISPR-Local

Find 388 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATTTGAACTTGAAAA+GGG	0.434783	3_2:-12191974	Msa0395510:CDS
AAAAGGGTAGAGAGGTTCAT+GGG	0.595201	3_2:-12191958	Msa0395510:CDS
AAACAAATCCAAAGCTCTCT+CGG	0.448481	3_2:+12191763	None:intergenic
AAAGGCGGATTCTGTTACAT+TGG	0.433648	3_2:-12191717	Msa0395510:CDS
AAATGTACTTAGTGGCATTG+TGG	0.671095	3_2:+12190097	None:intergenic
AACAAATCCAAAGCTCTCTC+GGG	0.494908	3_2:+12191764	None:intergenic
AAGAACGGCATGTGATAACA+TGG	0.656936	3_2:-12190914	Msa0395510:CDS
AAGAATGGAATCTGTTCTTG+TGG	0.616666	3_2:-12190018	Msa0395510:CDS
AAGAGATGCCTATCAAACCA+GGG	0.683886	3_2:-12190617	Msa0395510:CDS
AAGCTTCCTCGCAGTTTGAA+TGG	0.423828	3_2:+12190950	Msa0395530:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GGTGTTTGTAGATATTTGTA+TGG	+	chr3_2:12190046-12190065	None:intergenic	30.0%
ACATGTTTATGAGTTTGGTT+TGG	+	chr3_2:12190169-12190188	None:intergenic	30.0%
GAAGAACATGTTTATGAGTT+TGG	+	chr3_2:12190174-12190193	None:intergenic	30.0%
TATCATAGGATGCAAAATGA+TGG	-	chr3_2:12190320-12190339	Msa0395510:CDS	30.0%
TAAGCAAAATCATACACAAC+TGG	+	chr3_2:12190353-12190372	Msa0395520:intron	30.0%
GAGATTCGTTCATAAATTAG+TGG	-	chr3_2:12191021-12191040	Msa0395510:CDS	30.0%
AGAAGAAAACAAATGTCACA+TGG	-	chr3_2:12191149-12191168	Msa0395510:CDS	30.0%
TTGAGCATAACCTAATATCA+TGG	+	chr3_2:12191179-12191198	None:intergenic	30.0%
TCAAAATGAATGCGTTAATG+AGG	-	chr3_2:12191195-12191214	Msa0395510:CDS	30.0%
ATTGACATGTATGCAAAATG+TGG	-	chr3_2:12191391-12191410	Msa0395510:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	12190005	12192383	12190005	ID=Msa0395510;Name=Msa0395510
chr3_2	mRNA	12190005	12192383	12190005	ID=Msa0395510-mRNA-1;Parent=Msa0395510;Name=Msa0395510-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|792
chr3_2	exon	12190005	12192383	12190005	ID=Msa0395510-mRNA-1:exon:2889;Parent=Msa0395510-mRNA-1
chr3_2	CDS	12190005	12192383	12190005	ID=Msa0395510-mRNA-1:cds;Parent=Msa0395510-mRNA-1

Gene Sequence

>Msa0395510

ATGAGCTCTCAGCTCTTTCCCAACACAACAACCTTAATCCATACAAATATCTACAAACACCCTTCACCTAGTCTCTTAGACCACTGTACTTCAACAAAACACCTTCATCAAATCCTTCCCTTAATCATCAAAACCGGTTCCTACAACAATGACCACTTGTTCCAAACCAAACTCATAAACATGTTCTTCAAACATGGCAGCATCAATGAAGCATCTCTTGTCTTTGACACTGTTGAACACAAACAAGATGTTCTTTACCATGCCATGCTTAAAGGGTATGCAAAAAACTCATCTTTATGTGATGCTTTATGTTTTTATCATAGGATGCAAAATGATGGTGTTAGGCCAGTTGTGTATGATTTTGCTTATTTGTTGCAATTGTGTGGGAAAAGATTTGAACTTGAAAAGGGTAGAGAGGTTCATGGGCAGGTGGTAGTTAATGGGTTTGAGTATAATTTGTTTTCTATGATTGGTGTTATGAATTTTTATGTGAAATGTGGGGAGATTGATGATGCGTATAAGGTTTTTGAGAGATTGTCGGAGAAGGATTTGGTGTCTTGGACTAGTTTGATTGCGGGATATGCGCAGAATGGTTATCCCGAGAGAGCTTTGGATTTGTTTTATCGGATGCAGGAAGCTGGCTTAAAGGCGGATTCTGTTACATTGGTTAGTGTTTTGCCAGCTGTGGCAGATATTAAGGATTTGAGAATTGGAAAGTCTGTTCATGGTTATGCTCTTAGATTGGGATTTGAGTCAAAGGTTAGTTTTACAAACGCACTTTTGTATATGTACTTTGAATGTGGGTGTGAAAATATTGCGAGGTTGGTTTTTGAGGGGATGAGTAACAAGTGTGTTGTTTCGTGGAATACAATGATTGATGGTTATGCACAAATTGGTAAATCTGAAGAAGCGTTTGCTGCTTTTTTGAAGATGTTGGATGAAGGAGTTGAACCTACACGAGTTGCAATTATGGCGGCTTTGACCGCTTGTGCTGATTTAGGTGATCTTGAACGGGGGAGATTCGTTCATAAATTAGTGGATCGACTGAAACTTGATTTTGAAGTGTCGATTATGAACTCTTTAATATCCATGTATTCGAAGTGTAAGAGAGTTGATGTTGCAGTCTCAATCTTTGATAATTTGAAGAAGAAAACAAATGTCACATGGAATGCCATGATATTAGGTTATGCTCAAAATGAATGCGTTAATGAGGCTTTAAATCTGTTTTGTGTGATGCAATCTCAAGAAGTTAAACCTGACTGCTTTACTTTAGTGGCTGTAATTACTGCTCTTACTGATTTATCGGTTAACCGGATGGCCAAGTGGATTCATGGACTTGCAATAAGGACTTTTATGGACAATGATGTCTATGTTGCTACTGCTCTTATTGACATGTATGCAAAATGTGGAGCCATTCAAACTGCGAGGAAGCTTTTTGACATGATGCAAGAACGGCATGTGATAACATGGAATGCGATGATAGATGGATATGGCACACATGGCCTTGGAAAAGAAGCTATTGATCTCTTTGACAATATGCAGAAAGAAGCCGTTATGCCAAATGATACGACATTTTTGTCTGTTATCTCGGCTTGTAGTCACTCGGGTTACGTGGAAGAGGGCCTCCATTTCTTTCAAAGCATGAAGGAAGATTATGGCTTGGAGCCTTCAATGGATCACTATAGTGCTGTGGTCGATCTCCTTGGTCGTGCCGGAAAGTTACATGGTGCTTGGAATTTAATTCAAGAGATGCCTATCAAACCAGGGATTACCGTTTTAGGTGCAATGCTAGGTGCTTGCAAAATTCATAAAAATGTTGAATTGGGCGAAAAAGCTGCAGACAAACTATTTGAGTTAGATCCAGATGAGGGTGGGTATCATGTTCTGCTAGCAAACATGTATGCCTCTGCATCAATGTGGGACAAAGTGGCCAATGTGAGAACAGCCATGGAGAAAAAGGGTGTCCACAAAACTCCAGGCTGTAGTTTTGTTGAATTGAGAAATGAAGTTCACACATTCTACTCAGGAAGTACGAATCATCCTCAAGCAAAGAAAATCTACGCTTTTCTCGAGGCTCTTGGAGATAAGATCAGGGATGCTGGTTACATACCTGACACCAATTCTATTCATGACGTGGAGGAAAATGTGAAGGAGCGATTGCTCAGTAGCCATAGTGAGAGGCTTGCTATTGCATTTGGACTTTTAAACACAAGCCACGGTACACCAATACATGTAAGGAAGAATCTAAGAGTTTGTGGAGACTGCCACAATGCCACTAAGTACATTTCACTTGTGACAGGGAGGGAAATTATAGTACGTGATTTACGTAGGTTCCATCATTTTAAGAATGGAATCTGTTCTTGTGGTGATTATTGGTGA

Protein sequence

>Msa0395510

MSSQLFPNTTTLIHTNIYKHPSPSLLDHCTSTKHLHQILPLIIKTGSYNNDHLFQTKLINMFFKHGSINEASLVFDTVEHKQDVLYHAMLKGYAKNSSLCDALCFYHRMQNDGVRPVVYDFAYLLQLCGKRFELEKGREVHGQVVVNGFEYNLFSMIGVMNFYVKCGEIDDAYKVFERLSEKDLVSWTSLIAGYAQNGYPERALDLFYRMQEAGLKADSVTLVSVLPAVADIKDLRIGKSVHGYALRLGFESKVSFTNALLYMYFECGCENIARLVFEGMSNKCVVSWNTMIDGYAQIGKSEEAFAAFLKMLDEGVEPTRVAIMAALTACADLGDLERGRFVHKLVDRLKLDFEVSIMNSLISMYSKCKRVDVAVSIFDNLKKKTNVTWNAMILGYAQNECVNEALNLFCVMQSQEVKPDCFTLVAVITALTDLSVNRMAKWIHGLAIRTFMDNDVYVATALIDMYAKCGAIQTARKLFDMMQERHVITWNAMIDGYGTHGLGKEAIDLFDNMQKEAVMPNDTTFLSVISACSHSGYVEEGLHFFQSMKEDYGLEPSMDHYSAVVDLLGRAGKLHGAWNLIQEMPIKPGITVLGAMLGACKIHKNVELGEKAADKLFELDPDEGGYHVLLANMYASASMWDKVANVRTAMEKKGVHKTPGCSFVELRNEVHTFYSGSTNHPQAKKIYAFLEALGDKIRDAGYIPDTNSIHDVEENVKERLLSSHSERLAIAFGLLNTSHGTPIHVRKNLRVCGDCHNATKYISLVTGREIIVRDLRRFHHFKNGICSCGDYW*