Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475550 | XP_039687688.1 | 87.861 | 173 | 13 | 3 | 1 | 165 | 1 | 173 | 1.59e-99 | 294 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475550 | G7J528 | 87.861 | 173 | 13 | 3 | 1 | 165 | 1 | 173 | 7.60e-100 | 294 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011170 | Msa0475550 | 0.809940 | 1.476167e-50 | -8.615850e-47 |
| Msa0012060 | Msa0475550 | 0.809304 | 2.022029e-50 | -8.615850e-47 |
| Msa0017510 | Msa0475550 | 0.828000 | 1.146698e-54 | -8.615850e-47 |
| Msa0020930 | Msa0475550 | 0.814819 | 1.268670e-51 | -8.615850e-47 |
| Msa0031340 | Msa0475550 | 0.804721 | 1.885779e-49 | -8.615850e-47 |
| Msa0043980 | Msa0475550 | 0.811665 | 6.248461e-51 | -8.615850e-47 |
| Msa0068680 | Msa0475550 | 0.822835 | 1.914561e-53 | -8.615850e-47 |
| Msa0095560 | Msa0475550 | 0.803300 | 3.722692e-49 | -8.615850e-47 |
| Msa0112750 | Msa0475550 | 0.822372 | 2.453360e-53 | -8.615850e-47 |
| Msa0114060 | Msa0475550 | 0.828765 | 7.493625e-55 | -8.615850e-47 |
| Msa0122590 | Msa0475550 | 0.810743 | 9.905178e-51 | -8.615850e-47 |
| Msa0157290 | Msa0475550 | 0.828297 | 9.722480e-55 | -8.615850e-47 |
| Msa0157310 | Msa0475550 | 0.801494 | 8.767973e-49 | -8.615850e-47 |
| Msa0159930 | Msa0475550 | 0.829674 | 4.511512e-55 | -8.615850e-47 |
| Msa0175390 | Msa0475550 | 0.811253 | 7.677653e-51 | -8.615850e-47 |
| Msa0188830 | Msa0475550 | 0.800238 | 1.582576e-48 | -8.615850e-47 |
| Msa0200260 | Msa0475550 | 0.800028 | 1.746501e-48 | -8.615850e-47 |
| Msa0213520 | Msa0475550 | 0.806237 | 9.067844e-50 | -8.615850e-47 |
| Msa0220580 | Msa0475550 | 0.816857 | 4.454081e-52 | -8.615850e-47 |
| Msa0373930 | Msa0475550 | 0.818501 | 1.896602e-52 | -8.615850e-47 |
| Msa0379640 | Msa0475550 | 0.820322 | 7.290663e-53 | -8.615850e-47 |
| Msa0431690 | Msa0475550 | 0.811704 | 6.128020e-51 | -8.615850e-47 |
| Msa0436760 | Msa0475550 | 0.802565 | 5.281635e-49 | -8.615850e-47 |
| Msa0437990 | Msa0475550 | 0.808315 | 3.290547e-50 | -8.615850e-47 |
| Msa0440750 | Msa0475550 | 0.800786 | 1.224025e-48 | -8.615850e-47 |
| Msa0455040 | Msa0475550 | 0.808288 | 3.333863e-50 | -8.615850e-47 |
| Msa0475550 | Msa0479970 | 0.805257 | 1.456799e-49 | -8.615850e-47 |
| Msa0475550 | Msa0481530 | 0.806335 | 8.646141e-50 | -8.615850e-47 |
| Msa0475550 | Msa0484780 | 0.845574 | 3.731860e-59 | -8.615850e-47 |
| Msa0475550 | Msa0488560 | 0.800222 | 1.594951e-48 | -8.615850e-47 |
| Msa0475550 | Msa0493630 | 0.813651 | 2.297651e-51 | -8.615850e-47 |
| Msa0475550 | Msa0495320 | 0.802906 | 4.492476e-49 | -8.615850e-47 |
| Msa0475550 | Msa0501460 | 0.809042 | 2.300206e-50 | -8.615850e-47 |
| Msa0475550 | Msa0512900 | 0.839563 | 1.469963e-57 | -8.615850e-47 |
| Msa0475550 | Msa0515010 | 0.809318 | 2.007652e-50 | -8.615850e-47 |
| Msa0475550 | Msa0523460 | 0.811774 | 5.917548e-51 | -8.615850e-47 |
| Msa0475550 | Msa0532350 | 0.814313 | 1.641871e-51 | -8.615850e-47 |
| Msa0475550 | Msa0575700 | 0.807100 | 5.961971e-50 | -8.615850e-47 |
| Msa0475550 | Msa0577500 | 0.813675 | 2.270328e-51 | -8.615850e-47 |
| Msa0475550 | Msa0607050 | 0.811417 | 7.074429e-51 | -8.615850e-47 |
| Msa0475550 | Msa0610430 | 0.812931 | 3.306864e-51 | -8.615850e-47 |
| Msa0475550 | Msa0615310 | 0.803020 | 4.255027e-49 | -8.615850e-47 |
| Msa0475550 | Msa0657970 | 0.842512 | 2.471223e-58 | -8.615850e-47 |
| Msa0475550 | Msa0663390 | 0.804702 | 1.903214e-49 | -8.615850e-47 |
| Msa0475550 | Msa0667050 | 0.814319 | 1.637100e-51 | -8.615850e-47 |
| Msa0475550 | Msa0669440 | 0.806773 | 6.991295e-50 | -8.615850e-47 |
| Msa0475550 | Msa0672690 | 0.812695 | 3.724577e-51 | -8.615850e-47 |
| Msa0475550 | Msa0673460 | 0.809588 | 1.757064e-50 | -8.615850e-47 |
| Msa0475550 | Msa0688070 | 0.805341 | 1.398793e-49 | -8.615850e-47 |
| Msa0475550 | Msa0693380 | 0.805865 | 1.085952e-49 | -8.615850e-47 |
| Msa0475550 | Msa0696640 | 0.809734 | 1.634311e-50 | -8.615850e-47 |
| Msa0475550 | Msa0698360 | 0.804748 | 1.861408e-49 | -8.615850e-47 |
| Msa0475550 | Msa0709400 | 0.814514 | 1.482169e-51 | -8.615850e-47 |
| Msa0475550 | Msa0715470 | 0.812970 | 3.242305e-51 | -8.615850e-47 |
| Msa0475550 | Msa0737470 | 0.803748 | 3.006337e-49 | -8.615850e-47 |
| Msa0475550 | Msa0740510 | 0.807231 | 5.591196e-50 | -8.615850e-47 |
| Msa0475550 | Msa0769920 | 0.801960 | 7.036541e-49 | -8.615850e-47 |
| Msa0475550 | Msa0790510 | 0.828187 | 1.033434e-54 | -8.615850e-47 |
| Msa0475550 | Msa0793640 | 0.800921 | 1.148684e-48 | -8.615850e-47 |
| Msa0475550 | Msa0816590 | 0.801166 | 1.023463e-48 | -8.615850e-47 |
| Msa0475550 | Msa0820770 | 0.808624 | 2.826805e-50 | -8.615850e-47 |
| Msa0475550 | Msa0861090 | 0.802865 | 4.580083e-49 | -8.615850e-47 |
| Msa0475550 | Msa0880140 | 0.827743 | 1.321681e-54 | -8.615850e-47 |
| Msa0475550 | Msa0931520 | 0.809601 | 1.745294e-50 | -8.615850e-47 |
| Msa0475550 | Msa0944030 | 0.818468 | 1.929354e-52 | -8.615850e-47 |
| Msa0475550 | Msa0954920 | 0.819326 | 1.231710e-52 | -8.615850e-47 |
| Msa0475550 | Msa0969450 | 0.801098 | 1.056987e-48 | -8.615850e-47 |
| Msa0475550 | Msa0969520 | 0.810233 | 1.276163e-50 | -8.615850e-47 |
| Msa0475550 | Msa1014540 | 0.815336 | 9.742095e-52 | -8.615850e-47 |
| Msa0475550 | Msa1044420 | 0.800882 | 1.169773e-48 | -8.615850e-47 |
| Msa0475550 | Msa1075220 | -0.804869 | 1.756172e-49 | -8.615850e-47 |
| Msa0475550 | Msa1075540 | 0.812077 | 5.083796e-51 | -8.615850e-47 |
| Msa0475550 | Msa1079180 | 0.800213 | 1.601884e-48 | -8.615850e-47 |
| Msa0475550 | Msa1082500 | 0.851087 | 1.115330e-60 | -8.615850e-47 |
| Msa0475550 | Msa1100050 | 0.804086 | 2.556721e-49 | -8.615850e-47 |
| Msa0475550 | Msa1124960 | 0.811584 | 6.509291e-51 | -8.615850e-47 |
| Msa0475550 | Msa1131220 | 0.826526 | 2.584259e-54 | -8.615850e-47 |
| Msa0475550 | Msa1142020 | 0.812988 | 3.212721e-51 | -8.615850e-47 |
| Msa0475550 | Msa1154280 | 0.806957 | 6.391163e-50 | -8.615850e-47 |
| Msa0475550 | Msa1170410 | 0.809484 | 1.849633e-50 | -8.615850e-47 |
| Msa0475550 | Msa1172670 | 0.813286 | 2.763580e-51 | -8.615850e-47 |
| Msa0475550 | Msa1204530 | 0.809410 | 1.918555e-50 | -8.615850e-47 |
| Msa0475550 | Msa1212940 | 0.808556 | 2.922403e-50 | -8.615850e-47 |
| Msa0475550 | Msa1224480 | 0.810954 | 8.913659e-51 | -8.615850e-47 |
| Msa0475550 | Msa1228590 | 0.808993 | 2.357482e-50 | -8.615850e-47 |
| Msa0475550 | Msa1233890 | 0.807877 | 4.078531e-50 | -8.615850e-47 |
| Msa0475550 | Msa1233910 | 0.802614 | 5.161385e-49 | -8.615850e-47 |
| Msa0475550 | Msa1279210 | 0.803207 | 3.891753e-49 | -8.615850e-47 |
| Msa0475550 | Msa1283860 | 0.818517 | 1.880700e-52 | -8.615850e-47 |
| Msa0475550 | Msa1296760 | 0.813825 | 2.104075e-51 | -8.615850e-47 |
| Msa0475550 | Msa1305190 | 0.817288 | 3.563583e-52 | -8.615850e-47 |
| Msa0475550 | Msa1305340 | 0.838459 | 2.839407e-57 | -8.615850e-47 |
| Msa0475550 | Msa1306840 | 0.815877 | 7.380526e-52 | -8.615850e-47 |
| Msa0475550 | Msa1329700 | 0.833848 | 4.213508e-56 | -8.615850e-47 |
| Msa0475550 | Msa1331000 | 0.803064 | 4.165988e-49 | -8.615850e-47 |
| Msa0475550 | Msa1343760 | 0.803069 | 4.157358e-49 | -8.615850e-47 |
| Msa0475550 | Msa1357530 | 0.801438 | 9.003398e-49 | -8.615850e-47 |
| Msa0475550 | Msa1359040 | 0.830229 | 3.302557e-55 | -8.615850e-47 |
| Msa0475550 | Msa1372760 | 0.808400 | 3.154791e-50 | -8.615850e-47 |
| Msa0475550 | Msa1374470 | 0.818525 | 1.872744e-52 | -8.615850e-47 |
| Msa0475550 | Msa1397120 | 0.806327 | 8.681597e-50 | -8.615850e-47 |
| Msa0475550 | Msa1400870 | -0.802163 | 6.391079e-49 | -8.615850e-47 |
| Msa0475550 | Msa1403890 | 0.803106 | 4.084450e-49 | -8.615850e-47 |
| Msa0475550 | Msa1409870 | 0.806127 | 9.567676e-50 | -8.615850e-47 |
| Msa0475550 | Msa1411020 | 0.822426 | 2.384314e-53 | -8.615850e-47 |
| Msa0475550 | Msa1420490 | 0.814200 | 1.738983e-51 | -8.615850e-47 |
| Msa0475550 | Msa1423390 | 0.817931 | 2.553174e-52 | -8.615850e-47 |
| Msa0475550 | Msa1424290 | 0.818104 | 2.332643e-52 | -8.615850e-47 |
| Msa0475550 | Msa1424450 | 0.820591 | 6.325635e-53 | -8.615850e-47 |
| Msa0475550 | Msa1427230 | 0.819593 | 1.070501e-52 | -8.615850e-47 |
| Msa0475550 | Msa1434350 | 0.823375 | 1.432580e-53 | -8.615850e-47 |
| Msa0475550 | Msa1438250 | 0.807668 | 4.518231e-50 | -8.615850e-47 |
| Msa0475550 | Msa1439320 | 0.825155 | 5.470045e-54 | -8.615850e-47 |
| Msa0475550 | Msa1440370 | 0.811857 | 5.676919e-51 | -8.615850e-47 |
| Msa0475550 | Msa1440810 | 0.811883 | 5.601140e-51 | -8.615850e-47 |
| Msa0475550 | Msa1460050 | 0.815831 | 7.556559e-52 | -8.615850e-47 |
| Msa0475550 | Msa1460830 | 0.813131 | 2.989134e-51 | -8.615850e-47 |
| Msa0475550 | Msa1463670 | 0.801044 | 1.084324e-48 | -8.615850e-47 |
| Msa0475550 | Msa1466540 | 0.824169 | 9.337002e-54 | -8.615850e-47 |
| Msa0243100 | Msa0475550 | 0.804265 | 2.346580e-49 | -8.615850e-47 |
| Msa0260680 | Msa0475550 | 0.812103 | 5.016925e-51 | -8.615850e-47 |
| Msa0270100 | Msa0475550 | 0.800385 | 1.477359e-48 | -8.615850e-47 |
| Msa0280090 | Msa0475550 | 0.824547 | 7.608425e-54 | -8.615850e-47 |
| Msa0283450 | Msa0475550 | 0.803115 | 4.066019e-49 | -8.615850e-47 |
| Msa0283520 | Msa0475550 | 0.801717 | 7.892069e-49 | -8.615850e-47 |
| Msa0287410 | Msa0475550 | 0.820394 | 7.019688e-53 | -8.615850e-47 |
| Msa0288100 | Msa0475550 | 0.807572 | 4.734425e-50 | -8.615850e-47 |
| Msa0332000 | Msa0475550 | 0.813042 | 3.127569e-51 | -8.615850e-47 |
| Msa0338110 | Msa0475550 | 0.801179 | 1.017409e-48 | -8.615850e-47 |
| Msa0344910 | Msa0475550 | 0.802497 | 5.455756e-49 | -8.615850e-47 |
| Msa0345970 | Msa0475550 | 0.803607 | 3.216406e-49 | -8.615850e-47 |
| Msa0357340 | Msa0475550 | 0.811738 | 6.023795e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475550 | MtrunA17_Chr3g0132871 | 87.861 | 173 | 13 | 3 | 1 | 165 | 1 | 173 | 1.46e-103 | 294 |
| Msa0475550 | MtrunA17_Chr5g0427491 | 58.382 | 173 | 62 | 6 | 1 | 165 | 1 | 171 | 1.64e-54 | 170 |
| Msa0475550 | MtrunA17_Chr5g0412221 | 39.306 | 173 | 93 | 5 | 1 | 164 | 1 | 170 | 4.42e-25 | 95.1 |
| Msa0475550 | MtrunA17_Chr8g0367531 | 44.545 | 110 | 45 | 5 | 68 | 164 | 65 | 171 | 4.90e-15 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 47 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGATTCTGATTGGTCTAT+TGG | 0.221191 | 3_3:-78791420 | Msa0475550:CDS |
| GCTGTGCTTGTTCCTTGTTA+TGG | 0.307987 | 3_3:-78791327 | Msa0475550:CDS |
| CCTTGTTATGGATACAATTA+CGG | 0.333988 | 3_3:-78791315 | Msa0475550:CDS |
| GTCATTATCATTAGAGAATC+CGG | 0.370991 | 3_3:+78791377 | None:intergenic |
| GCAAGAAATATGTGGAAAGT+TGG | 0.395721 | 3_3:-78790736 | Msa0475550:CDS |
| ATTCTGATTGGTCTATTGGC+TGG | 0.411940 | 3_3:-78791416 | Msa0475550:CDS |
| CGACAACCACCACGGAAGAT+AGG | 0.413266 | 3_3:+78791683 | None:intergenic |
| ATGAGAGGGGAATAGAATAA+TGG | 0.423876 | 3_3:+78790471 | None:intergenic |
| CTGAATCTGTTGATTCTGAT+TGG | 0.430316 | 3_3:-78791428 | Msa0475550:CDS |
| AGCAACTTACTAAGCAATGT+TGG | 0.435452 | 3_3:-78791267 | Msa0475550:CDS |
| AGAAGGACGAACGACATAGT+AGG | 0.439387 | 3_3:-78791524 | Msa0475550:CDS |
| GTCCTTCTCCTTTCTTGAAG+TGG | 0.442736 | 3_3:+78791539 | None:intergenic |
| CAATTGTATATATTTACATC+AGG | 0.444076 | 3_3:+78790626 | None:intergenic |
| TGATTGGTCTATTGGCTGGT+TGG | 0.458151 | 3_3:-78791412 | Msa0475550:CDS |
| TTCTCCTTTCTTGAAGTGGA+AGG | 0.466324 | 3_3:+78791543 | None:intergenic |
| CTGATGTAAATATATACAAT+TGG | 0.467639 | 3_3:-78790625 | Msa0475550:three_prime_UTR |
| TGTGCCTTCCACTTCAAGAA+AGG | 0.469213 | 3_3:-78791547 | Msa0475550:CDS |
| TGGTTGGAGCCTCATGGAAC+CGG | 0.479225 | 3_3:-78791396 | Msa0475550:CDS |
| CAATTGTATATATTTACATC+AGG | 0.480033 | 3_3:+78790694 | None:intergenic |
| ATTGGCTGGTTGGAGCCTCA+TGG | 0.497856 | 3_3:-78791402 | Msa0475550:CDS |
| AATGTTGGGAACTTCTCATA+TGG | 0.506366 | 3_3:-78791252 | Msa0475550:intron |
| GCAACTTACTAAGCAATGTT+GGG | 0.510708 | 3_3:-78791266 | Msa0475550:CDS |
| ACAATTGTACACTGTAAACT+TGG | 0.512364 | 3_3:-78790678 | Msa0475550:three_prime_UTR |
| TTCAGCTGATTCTGTTACGA+GGG | 0.517927 | 3_3:-78791610 | Msa0475550:CDS |
| CCACCACGGAAGATAGGAAA+AGG | 0.520774 | 3_3:+78791689 | None:intergenic |
| GAAGGACGAACGACATAGTA+GGG | 0.533248 | 3_3:-78791523 | Msa0475550:CDS |
| TTACGGTGCCATGTTGGAGG+AGG | 0.534472 | 3_3:-78791298 | Msa0475550:CDS |
| GGAGGAGGCGAAAATTGATA+AGG | 0.536201 | 3_3:-78791502 | Msa0475550:CDS |
| ATTGTACACTGTAAACTTGG+AGG | 0.542761 | 3_3:-78790675 | Msa0475550:three_prime_UTR |
| TTAGAGGTTGTTGAATGAGA+GGG | 0.555816 | 3_3:+78790457 | None:intergenic |
| CAATTACGGTGCCATGTTGG+AGG | 0.559245 | 3_3:-78791301 | Msa0475550:CDS |
| GTTAGAGGTTGTTGAATGAG+AGG | 0.563995 | 3_3:+78790456 | None:intergenic |
| TAGAGGTTGTTGAATGAGAG+GGG | 0.565974 | 3_3:+78790458 | None:intergenic |
| CCGTAATTGTATCCATAACA+AGG | 0.583133 | 3_3:+78791315 | None:intergenic |
| TTCCACTTCAAGAAAGGAGA+AGG | 0.583525 | 3_3:-78791541 | Msa0475550:CDS |
| CTTCAGCTGATTCTGTTACG+AGG | 0.586698 | 3_3:-78791611 | Msa0475550:CDS |
| TGCAGAGAGCAAGAAATATG+TGG | 0.590013 | 3_3:-78790744 | Msa0475550:intron |
| TACGGTGCCATGTTGGAGGA+GGG | 0.603998 | 3_3:-78791297 | Msa0475550:CDS |
| TTTAGGACCCTCCTCCAACA+TGG | 0.608266 | 3_3:+78791290 | None:intergenic |
| TTCTTTGATTATGAACGTAG+AGG | 0.610598 | 3_3:+78790506 | None:intergenic |
| CGAACGACATAGTAGGGAGG+AGG | 0.626409 | 3_3:-78791517 | Msa0475550:CDS |
| ATACAATTACGGTGCCATGT+TGG | 0.628142 | 3_3:-78791304 | Msa0475550:CDS |
| TCAACGAATTCATAATCAGA+CGG | 0.643239 | 3_3:+78791459 | None:intergenic |
| ACGTGAATGAATTATGGATG+TGG | 0.658549 | 3_3:-78791712 | None:intergenic |
| TTTCTACTCGACAACCACCA+CGG | 0.706786 | 3_3:+78791675 | None:intergenic |
| GGACGAACGACATAGTAGGG+AGG | 0.710915 | 3_3:-78791520 | Msa0475550:CDS |
| TTAGAGAATCCGGTTCCATG+AGG | 0.719666 | 3_3:+78791387 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GACATTATTTTCTATTTAAA+AGG | - | chr3_3:78790984-78791003 | Msa0475550:intron | 15.0% |
| !! | AGATAGATTTAGAAATAAAT+TGG | - | chr3_3:78791272-78791291 | Msa0475550:CDS | 15.0% |
| !!! | GTTTTTGTTAGAAATAAATT+TGG | - | chr3_3:78791321-78791340 | Msa0475550:CDS | 15.0% |
| !!! | GACATTATTTTCTATTTAAA+AGG | - | chr3_3:78790984-78791003 | Msa0475550:intron | 15.0% |
| !! | AGATAGATTTAGAAATAAAT+TGG | - | chr3_3:78791272-78791291 | Msa0475550:CDS | 15.0% |
| !!! | GTTTTTGTTAGAAATAAATT+TGG | - | chr3_3:78791321-78791340 | Msa0475550:CDS | 15.0% |
| !! | GAAAATAATGTCTAAATATC+CGG | + | chr3_3:78790976-78790995 | None:intergenic | 20.0% |
| !! | TTTCATAGCATAGATATATT+TGG | - | chr3_3:78791123-78791142 | Msa0475550:intron | 20.0% |
| !!! | TATTTCTAAATCTATCTTAG+TGG | + | chr3_3:78791269-78791288 | None:intergenic | 20.0% |
| !! | CAATTGTATATATTTACATC+AGG | + | chr3_3:78791468-78791487 | None:intergenic | 20.0% |
| !! | CAATTGTATATATTTACATC+AGG | + | chr3_3:78791468-78791487 | None:intergenic | 20.0% |
| !! | CTGATGTAAATATATACAAT+TGG | - | chr3_3:78791466-78791485 | Msa0475550:CDS | 20.0% |
| !!! | TTTTGTTTAGCTTTATCATT+TGG | - | chr3_3:78791566-78791585 | Msa0475550:intron | 20.0% |
| !! | GAAAATAATGTCTAAATATC+CGG | + | chr3_3:78790976-78790995 | None:intergenic | 20.0% |
| !! | TTTCATAGCATAGATATATT+TGG | - | chr3_3:78791123-78791142 | Msa0475550:intron | 20.0% |
| !!! | TATTTCTAAATCTATCTTAG+TGG | + | chr3_3:78791269-78791288 | None:intergenic | 20.0% |
| !! | CAATTGTATATATTTACATC+AGG | + | chr3_3:78791468-78791487 | None:intergenic | 20.0% |
| !! | CAATTGTATATATTTACATC+AGG | + | chr3_3:78791468-78791487 | None:intergenic | 20.0% |
| !! | CTGATGTAAATATATACAAT+TGG | - | chr3_3:78791466-78791485 | Msa0475550:CDS | 20.0% |
| !!! | TTTTGTTTAGCTTTATCATT+TGG | - | chr3_3:78791566-78791585 | Msa0475550:intron | 20.0% |
| ! | ACAATTTCCTCATTAACAAA+AGG | + | chr3_3:78790595-78790614 | None:intergenic | 25.0% |
| ! | TAAAAGGCCATTGAAAATTA+TGG | - | chr3_3:78791000-78791019 | Msa0475550:intron | 25.0% |
| !! | GTGTATACCATAATTTTCAA+TGG | + | chr3_3:78791010-78791029 | None:intergenic | 25.0% |
| ! | ATATAAGACTATCCTTCATT+TGG | + | chr3_3:78791194-78791213 | None:intergenic | 25.0% |
| !!! | GTTTAGCCTATAGTTTTATT+TGG | + | chr3_3:78791242-78791261 | None:intergenic | 25.0% |
| !! | CTTTTCTTTTTTTTCTTGAG+TGG | - | chr3_3:78791357-78791376 | Msa0475550:intron | 25.0% |
| ! | ACAATTTCCTCATTAACAAA+AGG | + | chr3_3:78790595-78790614 | None:intergenic | 25.0% |
| ! | TAAAAGGCCATTGAAAATTA+TGG | - | chr3_3:78791000-78791019 | Msa0475550:intron | 25.0% |
| !! | GTGTATACCATAATTTTCAA+TGG | + | chr3_3:78791010-78791029 | None:intergenic | 25.0% |
| ! | ATATAAGACTATCCTTCATT+TGG | + | chr3_3:78791194-78791213 | None:intergenic | 25.0% |
| !!! | GTTTAGCCTATAGTTTTATT+TGG | + | chr3_3:78791242-78791261 | None:intergenic | 25.0% |
| !! | CTTTTCTTTTTTTTCTTGAG+TGG | - | chr3_3:78791357-78791376 | Msa0475550:intron | 25.0% |
| CAAAAGCCAAAAATCTCAAA+CGG | - | chr3_3:78790511-78790530 | Msa0475550:three_prime_UTR | 30.0% | |
| AAAAGCCAAAAATCTCAAAC+GGG | - | chr3_3:78790512-78790531 | Msa0475550:three_prime_UTR | 30.0% | |
| ! | GAGATTTCCTTTTGTTAATG+AGG | - | chr3_3:78790585-78790604 | Msa0475550:three_prime_UTR | 30.0% |
| TCAACGAATTCATAATCAGA+CGG | + | chr3_3:78790703-78790722 | None:intergenic | 30.0% | |
| GTCATTATCATTAGAGAATC+CGG | + | chr3_3:78790785-78790804 | None:intergenic | 30.0% | |
| ! | CCTTGTTATGGATACAATTA+CGG | - | chr3_3:78790844-78790863 | Msa0475550:intron | 30.0% |
| !!! | TTGCTTAGTAAGTTGCTTTT+AGG | + | chr3_3:78790889-78790908 | None:intergenic | 30.0% |
| ACTAGTTCAGAGTTAACATT+AGG | - | chr3_3:78791028-78791047 | Msa0475550:intron | 30.0% | |
| !! | TGTTGCATGCTTTTAATTGA+TGG | - | chr3_3:78791074-78791093 | Msa0475550:intron | 30.0% |
| !! | ATAGTCTTATATTTAGAGCC+CGG | - | chr3_3:78791202-78791221 | Msa0475550:intron | 30.0% |
| GGAAGACCAAATAAAACTAT+AGG | - | chr3_3:78791233-78791252 | Msa0475550:intron | 30.0% | |
| GGCTAAAATGTTAATGTGTA+TGG | - | chr3_3:78791378-78791397 | Msa0475550:CDS | 30.0% | |
| ACAATTGTACACTGTAAACT+TGG | - | chr3_3:78791481-78791500 | Msa0475550:CDS | 30.0% | |
| TTCTTTGATTATGAACGTAG+AGG | + | chr3_3:78791656-78791675 | None:intergenic | 30.0% | |
| CAAAAGCCAAAAATCTCAAA+CGG | - | chr3_3:78790511-78790530 | Msa0475550:three_prime_UTR | 30.0% | |
| AAAAGCCAAAAATCTCAAAC+GGG | - | chr3_3:78790512-78790531 | Msa0475550:three_prime_UTR | 30.0% | |
| ! | GAGATTTCCTTTTGTTAATG+AGG | - | chr3_3:78790585-78790604 | Msa0475550:three_prime_UTR | 30.0% |
| TCAACGAATTCATAATCAGA+CGG | + | chr3_3:78790703-78790722 | None:intergenic | 30.0% | |
| GTCATTATCATTAGAGAATC+CGG | + | chr3_3:78790785-78790804 | None:intergenic | 30.0% | |
| ! | CCTTGTTATGGATACAATTA+CGG | - | chr3_3:78790844-78790863 | Msa0475550:intron | 30.0% |
| !!! | TTGCTTAGTAAGTTGCTTTT+AGG | + | chr3_3:78790889-78790908 | None:intergenic | 30.0% |
| ACTAGTTCAGAGTTAACATT+AGG | - | chr3_3:78791028-78791047 | Msa0475550:intron | 30.0% | |
| !! | TGTTGCATGCTTTTAATTGA+TGG | - | chr3_3:78791074-78791093 | Msa0475550:intron | 30.0% |
| !! | ATAGTCTTATATTTAGAGCC+CGG | - | chr3_3:78791202-78791221 | Msa0475550:intron | 30.0% |
| GGAAGACCAAATAAAACTAT+AGG | - | chr3_3:78791233-78791252 | Msa0475550:intron | 30.0% | |
| GGCTAAAATGTTAATGTGTA+TGG | - | chr3_3:78791378-78791397 | Msa0475550:CDS | 30.0% | |
| ACAATTGTACACTGTAAACT+TGG | - | chr3_3:78791481-78791500 | Msa0475550:CDS | 30.0% | |
| TTCTTTGATTATGAACGTAG+AGG | + | chr3_3:78791656-78791675 | None:intergenic | 30.0% | |
| !! | CTGAATCTGTTGATTCTGAT+TGG | - | chr3_3:78790731-78790750 | Msa0475550:CDS | 35.0% |
| !! | GTTGATTCTGATTGGTCTAT+TGG | - | chr3_3:78790739-78790758 | Msa0475550:CDS | 35.0% |
| CCGTAATTGTATCCATAACA+AGG | + | chr3_3:78790847-78790866 | None:intergenic | 35.0% | |
| AGCAACTTACTAAGCAATGT+TGG | - | chr3_3:78790892-78790911 | Msa0475550:intron | 35.0% | |
| GCAACTTACTAAGCAATGTT+GGG | - | chr3_3:78790893-78790912 | Msa0475550:intron | 35.0% | |
| AATGTTGGGAACTTCTCATA+TGG | - | chr3_3:78790907-78790926 | Msa0475550:intron | 35.0% | |
| TTAACAGAGCAAAGCAAACT+TGG | + | chr3_3:78790950-78790969 | None:intergenic | 35.0% | |
| !! | TGCATGCTTTTAATTGATGG+AGG | - | chr3_3:78791077-78791096 | Msa0475550:intron | 35.0% |
| ATATATTTGGACATGTGCGA+AGG | - | chr3_3:78791136-78791155 | Msa0475550:intron | 35.0% | |
| TATATTTGGACATGTGCGAA+GGG | - | chr3_3:78791137-78791156 | Msa0475550:intron | 35.0% | |
| AAGACGAGTAAACCAAATGA+AGG | - | chr3_3:78791179-78791198 | Msa0475550:intron | 35.0% | |
| GCAAGAAATATGTGGAAAGT+TGG | - | chr3_3:78791423-78791442 | Msa0475550:CDS | 35.0% | |
| ATTGTACACTGTAAACTTGG+AGG | - | chr3_3:78791484-78791503 | Msa0475550:CDS | 35.0% | |
| ATGAGAGGGGAATAGAATAA+TGG | + | chr3_3:78791691-78791710 | None:intergenic | 35.0% | |
| !! | CTGAATCTGTTGATTCTGAT+TGG | - | chr3_3:78790731-78790750 | Msa0475550:CDS | 35.0% |
| !! | GTTGATTCTGATTGGTCTAT+TGG | - | chr3_3:78790739-78790758 | Msa0475550:CDS | 35.0% |
| CCGTAATTGTATCCATAACA+AGG | + | chr3_3:78790847-78790866 | None:intergenic | 35.0% | |
| AGCAACTTACTAAGCAATGT+TGG | - | chr3_3:78790892-78790911 | Msa0475550:intron | 35.0% | |
| GCAACTTACTAAGCAATGTT+GGG | - | chr3_3:78790893-78790912 | Msa0475550:intron | 35.0% | |
| AATGTTGGGAACTTCTCATA+TGG | - | chr3_3:78790907-78790926 | Msa0475550:intron | 35.0% | |
| TTAACAGAGCAAAGCAAACT+TGG | + | chr3_3:78790950-78790969 | None:intergenic | 35.0% | |
| !! | TGCATGCTTTTAATTGATGG+AGG | - | chr3_3:78791077-78791096 | Msa0475550:intron | 35.0% |
| ATATATTTGGACATGTGCGA+AGG | - | chr3_3:78791136-78791155 | Msa0475550:intron | 35.0% | |
| TATATTTGGACATGTGCGAA+GGG | - | chr3_3:78791137-78791156 | Msa0475550:intron | 35.0% | |
| AAGACGAGTAAACCAAATGA+AGG | - | chr3_3:78791179-78791198 | Msa0475550:intron | 35.0% | |
| GCAAGAAATATGTGGAAAGT+TGG | - | chr3_3:78791423-78791442 | Msa0475550:CDS | 35.0% | |
| ATTGTACACTGTAAACTTGG+AGG | - | chr3_3:78791484-78791503 | Msa0475550:CDS | 35.0% | |
| ATGAGAGGGGAATAGAATAA+TGG | + | chr3_3:78791691-78791710 | None:intergenic | 35.0% | |
| !! | GAACACCCGTTTGAGATTTT+TGG | + | chr3_3:78790520-78790539 | None:intergenic | 40.0% |
| ! | TTCAGCTGATTCTGTTACGA+GGG | - | chr3_3:78790549-78790568 | Msa0475550:three_prime_UTR | 40.0% |
| TTCTCCTTTCTTGAAGTGGA+AGG | + | chr3_3:78790619-78790638 | None:intergenic | 40.0% | |
| TTCCACTTCAAGAAAGGAGA+AGG | - | chr3_3:78790618-78790637 | Msa0475550:three_prime_UTR | 40.0% | |
| !! | ATTCTGATTGGTCTATTGGC+TGG | - | chr3_3:78790743-78790762 | Msa0475550:intron | 40.0% |
| !! | ATACAATTACGGTGCCATGT+TGG | - | chr3_3:78790855-78790874 | Msa0475550:intron | 40.0% |
| TGCTTTGCTCTGTTAACAAC+CGG | - | chr3_3:78790954-78790973 | Msa0475550:intron | 40.0% | |
| ATATTTGGACATGTGCGAAG+GGG | - | chr3_3:78791138-78791157 | Msa0475550:intron | 40.0% | |
| ! | TCTTATATTTAGAGCCCGGA+AGG | - | chr3_3:78791206-78791225 | Msa0475550:intron | 40.0% |
| TGCAGAGAGCAAGAAATATG+TGG | - | chr3_3:78791415-78791434 | Msa0475550:CDS | 40.0% | |
| !! | GAACACCCGTTTGAGATTTT+TGG | + | chr3_3:78790520-78790539 | None:intergenic | 40.0% |
| ! | TTCAGCTGATTCTGTTACGA+GGG | - | chr3_3:78790549-78790568 | Msa0475550:three_prime_UTR | 40.0% |
| TTCTCCTTTCTTGAAGTGGA+AGG | + | chr3_3:78790619-78790638 | None:intergenic | 40.0% | |
| TTCCACTTCAAGAAAGGAGA+AGG | - | chr3_3:78790618-78790637 | Msa0475550:three_prime_UTR | 40.0% | |
| !! | ATTCTGATTGGTCTATTGGC+TGG | - | chr3_3:78790743-78790762 | Msa0475550:intron | 40.0% |
| !! | ATACAATTACGGTGCCATGT+TGG | - | chr3_3:78790855-78790874 | Msa0475550:intron | 40.0% |
| TGCTTTGCTCTGTTAACAAC+CGG | - | chr3_3:78790954-78790973 | Msa0475550:intron | 40.0% | |
| ATATTTGGACATGTGCGAAG+GGG | - | chr3_3:78791138-78791157 | Msa0475550:intron | 40.0% | |
| ! | TCTTATATTTAGAGCCCGGA+AGG | - | chr3_3:78791206-78791225 | Msa0475550:intron | 40.0% |
| TGCAGAGAGCAAGAAATATG+TGG | - | chr3_3:78791415-78791434 | Msa0475550:CDS | 40.0% | |
| TTTCTACTCGACAACCACCA+CGG | + | chr3_3:78790487-78790506 | None:intergenic | 45.0% | |
| ! | CTTCAGCTGATTCTGTTACG+AGG | - | chr3_3:78790548-78790567 | Msa0475550:three_prime_UTR | 45.0% |
| TGTGCCTTCCACTTCAAGAA+AGG | - | chr3_3:78790612-78790631 | Msa0475550:three_prime_UTR | 45.0% | |
| GTCCTTCTCCTTTCTTGAAG+TGG | + | chr3_3:78790623-78790642 | None:intergenic | 45.0% | |
| AGAAGGACGAACGACATAGT+AGG | - | chr3_3:78790635-78790654 | Msa0475550:three_prime_UTR | 45.0% | |
| GAAGGACGAACGACATAGTA+GGG | - | chr3_3:78790636-78790655 | Msa0475550:three_prime_UTR | 45.0% | |
| GGAGGAGGCGAAAATTGATA+AGG | - | chr3_3:78790657-78790676 | Msa0475550:three_prime_UTR | 45.0% | |
| !! | TGATTGGTCTATTGGCTGGT+TGG | - | chr3_3:78790747-78790766 | Msa0475550:intron | 45.0% |
| TTAGAGAATCCGGTTCCATG+AGG | + | chr3_3:78790775-78790794 | None:intergenic | 45.0% | |
| GCTGTGCTTGTTCCTTGTTA+TGG | - | chr3_3:78790832-78790851 | Msa0475550:intron | 45.0% | |
| ! | TTTGGTCTTCCTCTACCTTC+CGG | + | chr3_3:78791224-78791243 | None:intergenic | 45.0% |
| GCTCTCTGCAGACAAACAAA+GGG | + | chr3_3:78791405-78791424 | None:intergenic | 45.0% | |
| TGCTCTCTGCAGACAAACAA+AGG | + | chr3_3:78791406-78791425 | None:intergenic | 45.0% | |
| TTTCTACTCGACAACCACCA+CGG | + | chr3_3:78790487-78790506 | None:intergenic | 45.0% | |
| ! | CTTCAGCTGATTCTGTTACG+AGG | - | chr3_3:78790548-78790567 | Msa0475550:three_prime_UTR | 45.0% |
| TGTGCCTTCCACTTCAAGAA+AGG | - | chr3_3:78790612-78790631 | Msa0475550:three_prime_UTR | 45.0% | |
| GTCCTTCTCCTTTCTTGAAG+TGG | + | chr3_3:78790623-78790642 | None:intergenic | 45.0% | |
| AGAAGGACGAACGACATAGT+AGG | - | chr3_3:78790635-78790654 | Msa0475550:three_prime_UTR | 45.0% | |
| GAAGGACGAACGACATAGTA+GGG | - | chr3_3:78790636-78790655 | Msa0475550:three_prime_UTR | 45.0% | |
| GGAGGAGGCGAAAATTGATA+AGG | - | chr3_3:78790657-78790676 | Msa0475550:three_prime_UTR | 45.0% | |
| !! | TGATTGGTCTATTGGCTGGT+TGG | - | chr3_3:78790747-78790766 | Msa0475550:intron | 45.0% |
| TTAGAGAATCCGGTTCCATG+AGG | + | chr3_3:78790775-78790794 | None:intergenic | 45.0% | |
| GCTGTGCTTGTTCCTTGTTA+TGG | - | chr3_3:78790832-78790851 | Msa0475550:intron | 45.0% | |
| ! | TTTGGTCTTCCTCTACCTTC+CGG | + | chr3_3:78791224-78791243 | None:intergenic | 45.0% |
| GCTCTCTGCAGACAAACAAA+GGG | + | chr3_3:78791405-78791424 | None:intergenic | 45.0% | |
| TGCTCTCTGCAGACAAACAA+AGG | + | chr3_3:78791406-78791425 | None:intergenic | 45.0% | |
| ! | TGGCCTTTTCCTATCTTCCG+TGG | - | chr3_3:78790467-78790486 | Msa0475550:three_prime_UTR | 50.0% |
| CCACCACGGAAGATAGGAAA+AGG | + | chr3_3:78790473-78790492 | None:intergenic | 50.0% | |
| ! | CCTTTTCCTATCTTCCGTGG+TGG | - | chr3_3:78790470-78790489 | Msa0475550:three_prime_UTR | 50.0% |
| !! | CAATTACGGTGCCATGTTGG+AGG | - | chr3_3:78790858-78790877 | Msa0475550:intron | 50.0% |
| ! | TTTAGGACCCTCCTCCAACA+TGG | + | chr3_3:78790872-78790891 | None:intergenic | 50.0% |
| ! | ATTTAGAGCCCGGAAGGTAG+AGG | - | chr3_3:78791212-78791231 | Msa0475550:intron | 50.0% |
| ! | TTGGTCTTCCTCTACCTTCC+GGG | + | chr3_3:78791223-78791242 | None:intergenic | 50.0% |
| ! | TGGCCTTTTCCTATCTTCCG+TGG | - | chr3_3:78790467-78790486 | Msa0475550:three_prime_UTR | 50.0% |
| CCACCACGGAAGATAGGAAA+AGG | + | chr3_3:78790473-78790492 | None:intergenic | 50.0% | |
| ! | CCTTTTCCTATCTTCCGTGG+TGG | - | chr3_3:78790470-78790489 | Msa0475550:three_prime_UTR | 50.0% |
| !! | CAATTACGGTGCCATGTTGG+AGG | - | chr3_3:78790858-78790877 | Msa0475550:intron | 50.0% |
| ! | TTTAGGACCCTCCTCCAACA+TGG | + | chr3_3:78790872-78790891 | None:intergenic | 50.0% |
| ! | ATTTAGAGCCCGGAAGGTAG+AGG | - | chr3_3:78791212-78791231 | Msa0475550:intron | 50.0% |
| ! | TTGGTCTTCCTCTACCTTCC+GGG | + | chr3_3:78791223-78791242 | None:intergenic | 50.0% |
| CGACAACCACCACGGAAGAT+AGG | + | chr3_3:78790479-78790498 | None:intergenic | 55.0% | |
| GGACGAACGACATAGTAGGG+AGG | - | chr3_3:78790639-78790658 | Msa0475550:three_prime_UTR | 55.0% | |
| CGAACGACATAGTAGGGAGG+AGG | - | chr3_3:78790642-78790661 | Msa0475550:three_prime_UTR | 55.0% | |
| ! | ATTGGCTGGTTGGAGCCTCA+TGG | - | chr3_3:78790757-78790776 | Msa0475550:intron | 55.0% |
| TGGTTGGAGCCTCATGGAAC+CGG | - | chr3_3:78790763-78790782 | Msa0475550:intron | 55.0% | |
| !! | TTACGGTGCCATGTTGGAGG+AGG | - | chr3_3:78790861-78790880 | Msa0475550:intron | 55.0% |
| !! | TACGGTGCCATGTTGGAGGA+GGG | - | chr3_3:78790862-78790881 | Msa0475550:intron | 55.0% |
| CGACAACCACCACGGAAGAT+AGG | + | chr3_3:78790479-78790498 | None:intergenic | 55.0% | |
| GGACGAACGACATAGTAGGG+AGG | - | chr3_3:78790639-78790658 | Msa0475550:three_prime_UTR | 55.0% | |
| CGAACGACATAGTAGGGAGG+AGG | - | chr3_3:78790642-78790661 | Msa0475550:three_prime_UTR | 55.0% | |
| ! | ATTGGCTGGTTGGAGCCTCA+TGG | - | chr3_3:78790757-78790776 | Msa0475550:intron | 55.0% |
| TGGTTGGAGCCTCATGGAAC+CGG | - | chr3_3:78790763-78790782 | Msa0475550:intron | 55.0% | |
| !! | TTACGGTGCCATGTTGGAGG+AGG | - | chr3_3:78790861-78790880 | Msa0475550:intron | 55.0% |
| !! | TACGGTGCCATGTTGGAGGA+GGG | - | chr3_3:78790862-78790881 | Msa0475550:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 78790460 | 78791721 | 78790460 | ID=Msa0475550;Name=Msa0475550 |
| chr3_3 | mRNA | 78790460 | 78791721 | 78790460 | ID=Msa0475550-mRNA-1;Parent=Msa0475550;Name=Msa0475550-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0.33|0.25|1|0|0|4|252|165 |
| chr3_3 | exon | 78790460 | 78790761 | 78790460 | ID=Msa0475550-mRNA-1:exon:21332;Parent=Msa0475550-mRNA-1 |
| chr3_3 | exon | 78791253 | 78791360 | 78791253 | ID=Msa0475550-mRNA-1:exon:21331;Parent=Msa0475550-mRNA-1 |
| chr3_3 | exon | 78791373 | 78791574 | 78791373 | ID=Msa0475550-mRNA-1:exon:21330;Parent=Msa0475550-mRNA-1 |
| chr3_3 | exon | 78791584 | 78791721 | 78791584 | ID=Msa0475550-mRNA-1:exon:21329;Parent=Msa0475550-mRNA-1 |
| chr3_3 | CDS | 78791584 | 78791721 | 78791584 | ID=Msa0475550-mRNA-1:cds;Parent=Msa0475550-mRNA-1 |
| chr3_3 | CDS | 78791373 | 78791574 | 78791373 | ID=Msa0475550-mRNA-1:cds;Parent=Msa0475550-mRNA-1 |
| chr3_3 | CDS | 78791253 | 78791360 | 78791253 | ID=Msa0475550-mRNA-1:cds;Parent=Msa0475550-mRNA-1 |
| chr3_3 | CDS | 78790712 | 78790761 | 78790712 | ID=Msa0475550-mRNA-1:cds;Parent=Msa0475550-mRNA-1 |
| chr3_3 | three_prime_UTR | 78790460 | 78790711 | 78790460 | ID=Msa0475550-mRNA-1:three_prime_utr;Parent=Msa0475550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
