Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0670740 | XP_024638897.1 | 97.279 | 294 | 5 | 2 | 1 | 291 | 1 | 294 | 0.0 | 582 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0670740 | sp|Q93VV0|ZDHC6_ARATH | 68.683 | 281 | 86 | 1 | 13 | 291 | 5 | 285 | 2.54e-137 | 392 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0670740 | A0A072UT43 | 97.279 | 294 | 5 | 2 | 1 | 291 | 1 | 294 | 0.0 | 582 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017980 | Msa0670740 | -0.812362 | 4.403990e-51 | -8.615850e-47 |
| Msa0034100 | Msa0670740 | -0.826196 | 3.097322e-54 | -8.615850e-47 |
| Msa0053960 | Msa0670740 | -0.802916 | 4.469938e-49 | -8.615850e-47 |
| Msa0059880 | Msa0670740 | 0.801491 | 8.780781e-49 | -8.615850e-47 |
| Msa0080620 | Msa0670740 | -0.803525 | 3.344640e-49 | -8.615850e-47 |
| Msa0081790 | Msa0670740 | -0.806683 | 7.301072e-50 | -8.615850e-47 |
| Msa0085580 | Msa0670740 | -0.801335 | 9.454254e-49 | -8.615850e-47 |
| Msa0089470 | Msa0670740 | -0.800438 | 1.441350e-48 | -8.615850e-47 |
| Msa0097730 | Msa0670740 | -0.812098 | 5.029935e-51 | -8.615850e-47 |
| Msa0116950 | Msa0670740 | -0.804926 | 1.708132e-49 | -8.615850e-47 |
| Msa0120320 | Msa0670740 | -0.803715 | 3.054187e-49 | -8.615850e-47 |
| Msa0619690 | Msa0670740 | -0.821384 | 4.155511e-53 | -8.615850e-47 |
| Msa0624930 | Msa0670740 | 0.807916 | 4.000009e-50 | -8.615850e-47 |
| Msa0631900 | Msa0670740 | 0.905862 | 2.740179e-80 | -8.615850e-47 |
| Msa0665040 | Msa0670740 | -0.802536 | 5.354180e-49 | -8.615850e-47 |
| Msa0670740 | Msa0702360 | -0.809281 | 2.045059e-50 | -8.615850e-47 |
| Msa0670740 | Msa0702560 | -0.818558 | 1.840843e-52 | -8.615850e-47 |
| Msa0670740 | Msa0705810 | -0.800991 | 1.111350e-48 | -8.615850e-47 |
| Msa0670740 | Msa0714060 | -0.802620 | 5.144710e-49 | -8.615850e-47 |
| Msa0670740 | Msa0714200 | -0.810202 | 1.296041e-50 | -8.615850e-47 |
| Msa0670740 | Msa0716600 | 0.815791 | 7.715450e-52 | -8.615850e-47 |
| Msa0670740 | Msa0756440 | -0.823438 | 1.385105e-53 | -8.615850e-47 |
| Msa0670740 | Msa0757990 | 0.802105 | 6.568351e-49 | -8.615850e-47 |
| Msa0670740 | Msa0758000 | 0.830360 | 3.068595e-55 | -8.615850e-47 |
| Msa0670740 | Msa0774360 | -0.807160 | 5.790421e-50 | -8.615850e-47 |
| Msa0670740 | Msa0776290 | -0.811869 | 5.640836e-51 | -8.615850e-47 |
| Msa0670740 | Msa0797980 | -0.806988 | 6.294550e-50 | -8.615850e-47 |
| Msa0670740 | Msa0813630 | -0.805482 | 1.306855e-49 | -8.615850e-47 |
| Msa0670740 | Msa0825520 | -0.809770 | 1.605299e-50 | -8.615850e-47 |
| Msa0670740 | Msa0835550 | -0.828483 | 8.766145e-55 | -8.615850e-47 |
| Msa0670740 | Msa0852090 | -0.805654 | 1.202355e-49 | -8.615850e-47 |
| Msa0670740 | Msa0864730 | -0.814323 | 1.633244e-51 | -8.615850e-47 |
| Msa0670740 | Msa0864750 | -0.814321 | 1.635339e-51 | -8.615850e-47 |
| Msa0670740 | Msa0868040 | -0.800035 | 1.740912e-48 | -8.615850e-47 |
| Msa0670740 | Msa0876030 | -0.830678 | 2.565456e-55 | -8.615850e-47 |
| Msa0670740 | Msa0902340 | 0.817797 | 2.737003e-52 | -8.615850e-47 |
| Msa0670740 | Msa0912110 | -0.802940 | 4.418867e-49 | -8.615850e-47 |
| Msa0670740 | Msa0925630 | -0.807360 | 5.251439e-50 | -8.615850e-47 |
| Msa0670740 | Msa0999590 | -0.804025 | 2.633463e-49 | -8.615850e-47 |
| Msa0670740 | Msa1010470 | -0.823871 | 1.096796e-53 | -8.615850e-47 |
| Msa0670740 | Msa1036020 | 0.832885 | 7.321547e-56 | -8.615850e-47 |
| Msa0670740 | Msa1043020 | -0.803848 | 2.866536e-49 | -8.615850e-47 |
| Msa0670740 | Msa1076280 | 0.812754 | 3.615325e-51 | -8.615850e-47 |
| Msa0670740 | Msa1078600 | -0.805968 | 1.033100e-49 | -8.615850e-47 |
| Msa0670740 | Msa1078770 | -0.801659 | 8.111660e-49 | -8.615850e-47 |
| Msa0670740 | Msa1084210 | -0.800136 | 1.660705e-48 | -8.615850e-47 |
| Msa0670740 | Msa1096510 | -0.801437 | 9.006618e-49 | -8.615850e-47 |
| Msa0670740 | Msa1096570 | -0.807164 | 5.776573e-50 | -8.615850e-47 |
| Msa0670740 | Msa1106830 | -0.800156 | 1.644578e-48 | -8.615850e-47 |
| Msa0670740 | Msa1140480 | -0.824917 | 6.225890e-54 | -8.615850e-47 |
| Msa0670740 | Msa1150860 | 0.802219 | 6.224222e-49 | -8.615850e-47 |
| Msa0670740 | Msa1161520 | -0.800440 | 1.440075e-48 | -8.615850e-47 |
| Msa0670740 | Msa1182400 | -0.806560 | 7.752508e-50 | -8.615850e-47 |
| Msa0670740 | Msa1202220 | -0.801070 | 1.070881e-48 | -8.615850e-47 |
| Msa0670740 | Msa1211260 | -0.804259 | 2.354064e-49 | -8.615850e-47 |
| Msa0670740 | Msa1214960 | 0.813517 | 2.458695e-51 | -8.615850e-47 |
| Msa0670740 | Msa1224820 | -0.815550 | 8.730965e-52 | -8.615850e-47 |
| Msa0670740 | Msa1240060 | 0.801969 | 7.005185e-49 | -8.615850e-47 |
| Msa0670740 | Msa1243630 | -0.809559 | 1.782497e-50 | -8.615850e-47 |
| Msa0670740 | Msa1244220 | -0.810353 | 1.202095e-50 | -8.615850e-47 |
| Msa0670740 | Msa1286860 | -0.803569 | 3.274960e-49 | -8.615850e-47 |
| Msa0670740 | Msa1286950 | -0.813229 | 2.845215e-51 | -8.615850e-47 |
| Msa0670740 | Msa1295220 | -0.823880 | 1.091731e-53 | -8.615850e-47 |
| Msa0670740 | Msa1297220 | -0.806191 | 9.273236e-50 | -8.615850e-47 |
| Msa0670740 | Msa1308010 | -0.801522 | 8.652181e-49 | -8.615850e-47 |
| Msa0670740 | Msa1319230 | -0.801403 | 9.153678e-49 | -8.615850e-47 |
| Msa0670740 | Msa1320660 | -0.802641 | 5.095703e-49 | -8.615850e-47 |
| Msa0670740 | Msa1335500 | 0.813558 | 2.409238e-51 | -8.615850e-47 |
| Msa0670740 | Msa1343450 | -0.810235 | 1.274904e-50 | -8.615850e-47 |
| Msa0670740 | Msa1350350 | -0.806105 | 9.669184e-50 | -8.615850e-47 |
| Msa0670740 | Msa1353280 | -0.810751 | 9.864696e-51 | -8.615850e-47 |
| Msa0670740 | Msa1356730 | -0.819230 | 1.295647e-52 | -8.615850e-47 |
| Msa0670740 | Msa1361090 | -0.801810 | 7.552223e-49 | -8.615850e-47 |
| Msa0670740 | Msa1373560 | 0.805638 | 1.211977e-49 | -8.615850e-47 |
| Msa0670740 | Msa1378840 | -0.802510 | 5.422351e-49 | -8.615850e-47 |
| Msa0670740 | Msa1384620 | -0.810879 | 9.256133e-51 | -8.615850e-47 |
| Msa0670740 | Msa1388270 | -0.810006 | 1.428476e-50 | -8.615850e-47 |
| Msa0670740 | Msa1413900 | -0.801067 | 1.072256e-48 | -8.615850e-47 |
| Msa0670740 | Msa1414000 | -0.802397 | 5.720467e-49 | -8.615850e-47 |
| Msa0670740 | Msa1427600 | -0.816791 | 4.610177e-52 | -8.615850e-47 |
| Msa0670740 | Msa1430630 | -0.806370 | 8.500893e-50 | -8.615850e-47 |
| Msa0670740 | Msa1451780 | -0.808881 | 2.490345e-50 | -8.615850e-47 |
| Msa0670740 | Msa1459630 | -0.801150 | 1.031262e-48 | -8.615850e-47 |
| Msa0670740 | Msa1463500 | -0.802447 | 5.585206e-49 | -8.615850e-47 |
| Msa0128110 | Msa0670740 | -0.824404 | 8.221595e-54 | -8.615850e-47 |
| Msa0129270 | Msa0670740 | 0.805338 | 1.400655e-49 | -8.615850e-47 |
| Msa0131090 | Msa0670740 | -0.820590 | 6.329597e-53 | -8.615850e-47 |
| Msa0132920 | Msa0670740 | -0.818919 | 1.524454e-52 | -8.615850e-47 |
| Msa0140870 | Msa0670740 | -0.800246 | 1.576690e-48 | -8.615850e-47 |
| Msa0150910 | Msa0670740 | 0.800881 | 1.170257e-48 | -8.615850e-47 |
| Msa0160080 | Msa0670740 | -0.800845 | 1.190701e-48 | -8.615850e-47 |
| Msa0178440 | Msa0670740 | -0.808226 | 3.436357e-50 | -8.615850e-47 |
| Msa0195140 | Msa0670740 | -0.801817 | 7.530093e-49 | -8.615850e-47 |
| Msa0221460 | Msa0670740 | -0.806483 | 8.047316e-50 | -8.615850e-47 |
| Msa0384150 | Msa0670740 | -0.820584 | 6.350826e-53 | -8.615850e-47 |
| Msa0428330 | Msa0670740 | -0.811330 | 7.390893e-51 | -8.615850e-47 |
| Msa0430040 | Msa0670740 | -0.816309 | 5.908602e-52 | -8.615850e-47 |
| Msa0434820 | Msa0670740 | -0.814575 | 1.436937e-51 | -8.615850e-47 |
| Msa0478730 | Msa0670740 | -0.817529 | 3.144981e-52 | -8.615850e-47 |
| Msa0481050 | Msa0670740 | -0.811442 | 6.988106e-51 | -8.615850e-47 |
| Msa0244820 | Msa0670740 | -0.809273 | 2.052705e-50 | -8.615850e-47 |
| Msa0269430 | Msa0670740 | -0.800367 | 1.489822e-48 | -8.615850e-47 |
| Msa0300670 | Msa0670740 | -0.802531 | 5.367857e-49 | -8.615850e-47 |
| Msa0309490 | Msa0670740 | -0.811897 | 5.564415e-51 | -8.615850e-47 |
| Msa0314980 | Msa0670740 | -0.815564 | 8.668147e-52 | -8.615850e-47 |
| Msa0335860 | Msa0670740 | -0.802611 | 5.167822e-49 | -8.615850e-47 |
| Msa0337760 | Msa0670740 | -0.808784 | 2.612210e-50 | -8.615850e-47 |
| Msa0500490 | Msa0670740 | -0.816050 | 6.752565e-52 | -8.615850e-47 |
| Msa0521940 | Msa0670740 | 0.809151 | 2.180551e-50 | -8.615850e-47 |
| Msa0522810 | Msa0670740 | -0.808571 | 2.901809e-50 | -8.615850e-47 |
| Msa0529360 | Msa0670740 | 0.800232 | 1.586958e-48 | -8.615850e-47 |
| Msa0533140 | Msa0670740 | -0.801867 | 7.351188e-49 | -8.615850e-47 |
| Msa0534380 | Msa0670740 | -0.814980 | 1.168818e-51 | -8.615850e-47 |
| Msa0581490 | Msa0670740 | -0.809782 | 1.596313e-50 | -8.615850e-47 |
| Msa0591890 | Msa0670740 | 0.854693 | 1.038712e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0670740 | MtrunA17_Chr4g0009911 | 97.279 | 294 | 5 | 2 | 1 | 291 | 1 | 294 | 0.0 | 582 |
| Msa0670740 | MtrunA17_Chr1g0199411 | 48.889 | 270 | 127 | 5 | 17 | 282 | 11 | 273 | 3.13e-85 | 256 |
| Msa0670740 | MtrunA17_Chr7g0276121 | 32.273 | 220 | 116 | 7 | 70 | 270 | 80 | 285 | 1.81e-28 | 110 |
| Msa0670740 | MtrunA17_Chr4g0011001 | 32.083 | 240 | 139 | 6 | 44 | 270 | 54 | 282 | 4.32e-27 | 107 |
| Msa0670740 | MtrunA17_Chr1g0201631 | 31.313 | 198 | 110 | 6 | 51 | 225 | 67 | 261 | 3.77e-22 | 95.5 |
| Msa0670740 | MtrunA17_Chr7g0255151 | 30.545 | 275 | 140 | 13 | 1 | 260 | 69 | 307 | 1.50e-21 | 94.0 |
| Msa0670740 | MtrunA17_Chr6g0464751 | 31.343 | 201 | 108 | 7 | 51 | 225 | 67 | 263 | 2.72e-20 | 90.1 |
| Msa0670740 | MtrunA17_Chr6g0462021 | 29.167 | 192 | 107 | 5 | 76 | 256 | 123 | 296 | 4.52e-19 | 86.7 |
| Msa0670740 | MtrunA17_Chr3g0131931 | 27.189 | 217 | 111 | 6 | 73 | 260 | 103 | 301 | 1.24e-17 | 82.4 |
| Msa0670740 | MtrunA17_Chr7g0255161 | 27.197 | 239 | 126 | 9 | 75 | 291 | 67 | 279 | 1.23e-16 | 79.0 |
| Msa0670740 | MtrunA17_Chr1g0163561 | 33.333 | 156 | 79 | 3 | 12 | 167 | 85 | 215 | 3.11e-16 | 77.8 |
| Msa0670740 | MtrunA17_Chr5g0406311 | 29.189 | 185 | 111 | 5 | 105 | 283 | 170 | 340 | 6.85e-16 | 77.0 |
| Msa0670740 | MtrunA17_Chr7g0273371 | 27.500 | 240 | 137 | 7 | 22 | 235 | 86 | 314 | 1.95e-15 | 75.9 |
| Msa0670740 | MtrunA17_Chr4g0037991 | 36.937 | 111 | 55 | 2 | 57 | 167 | 138 | 233 | 2.71e-15 | 75.1 |
| Msa0670740 | MtrunA17_Chr4g0064931 | 26.087 | 253 | 157 | 8 | 22 | 256 | 293 | 533 | 2.24e-14 | 73.2 |
| Msa0670740 | MtrunA17_Chr4g0038841 | 30.065 | 153 | 95 | 4 | 99 | 239 | 177 | 329 | 6.19e-14 | 72.0 |
| Msa0670740 | MtrunA17_Chr7g0251761 | 31.847 | 157 | 92 | 5 | 104 | 256 | 151 | 296 | 2.70e-13 | 69.7 |
| Msa0670740 | MtrunA17_Chr4g0049351 | 46.154 | 65 | 35 | 0 | 103 | 167 | 362 | 426 | 3.53e-13 | 69.7 |
| Msa0670740 | MtrunA17_Chr1g0193941 | 28.025 | 157 | 97 | 3 | 84 | 228 | 141 | 293 | 5.05e-13 | 68.9 |
| Msa0670740 | MtrunA17_Chr4g0042821 | 29.670 | 182 | 109 | 6 | 104 | 266 | 180 | 361 | 1.44e-12 | 67.8 |
| Msa0670740 | MtrunA17_Chr1g0211231 | 28.054 | 221 | 123 | 8 | 44 | 256 | 333 | 525 | 1.69e-12 | 67.4 |
| Msa0670740 | MtrunA17_Chr1g0211241 | 26.378 | 254 | 164 | 7 | 12 | 256 | 371 | 610 | 6.82e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0670740 | AT3G09320.1 | 68.683 | 281 | 86 | 1 | 13 | 291 | 5 | 285 | 2.58e-138 | 392 |
| Msa0670740 | AT5G04270.1 | 52.362 | 254 | 113 | 3 | 16 | 267 | 7 | 254 | 1.87e-81 | 247 |
| Msa0670740 | AT4G22750.1 | 34.978 | 223 | 118 | 6 | 57 | 266 | 62 | 270 | 1.62e-31 | 119 |
| Msa0670740 | AT4G00840.1 | 29.930 | 284 | 166 | 9 | 22 | 283 | 17 | 289 | 6.58e-30 | 114 |
| Msa0670740 | AT3G60800.1 | 32.917 | 240 | 131 | 8 | 44 | 266 | 54 | 280 | 1.51e-28 | 111 |
| Msa0670740 | AT4G00840.2 | 42.593 | 108 | 57 | 3 | 44 | 146 | 47 | 154 | 1.28e-22 | 94.0 |
| Msa0670740 | AT5G50020.3 | 32.663 | 199 | 106 | 7 | 51 | 225 | 66 | 260 | 9.17e-22 | 94.7 |
| Msa0670740 | AT5G50020.2 | 32.663 | 199 | 106 | 7 | 51 | 225 | 96 | 290 | 1.25e-21 | 94.4 |
| Msa0670740 | AT3G56930.1 | 31.579 | 190 | 102 | 6 | 75 | 256 | 123 | 292 | 1.56e-21 | 94.4 |
| Msa0670740 | AT4G24630.1 | 29.046 | 241 | 134 | 8 | 12 | 222 | 24 | 257 | 7.60e-20 | 89.0 |
| Msa0670740 | AT5G05070.1 | 26.766 | 269 | 152 | 9 | 20 | 260 | 66 | 317 | 5.22e-19 | 86.7 |
| Msa0670740 | AT5G41060.2 | 25.000 | 264 | 152 | 10 | 20 | 256 | 34 | 278 | 5.90e-19 | 86.7 |
| Msa0670740 | AT5G41060.1 | 25.000 | 264 | 152 | 10 | 20 | 256 | 49 | 293 | 7.26e-19 | 86.3 |
| Msa0670740 | AT5G41060.3 | 27.468 | 233 | 123 | 10 | 51 | 256 | 13 | 226 | 9.67e-19 | 85.5 |
| Msa0670740 | AT5G41060.4 | 27.468 | 233 | 123 | 10 | 51 | 256 | 13 | 226 | 9.67e-19 | 85.5 |
| Msa0670740 | AT5G50020.1 | 31.658 | 199 | 101 | 8 | 51 | 225 | 66 | 253 | 2.38e-17 | 82.0 |
| Msa0670740 | AT3G48760.1 | 28.111 | 217 | 109 | 9 | 73 | 260 | 110 | 308 | 3.15e-17 | 82.0 |
| Msa0670740 | AT2G40990.1 | 29.032 | 186 | 101 | 7 | 75 | 252 | 137 | 299 | 6.53e-17 | 80.9 |
| Msa0670740 | AT3G56920.1 | 27.984 | 243 | 130 | 9 | 45 | 260 | 64 | 288 | 8.95e-17 | 79.7 |
| Msa0670740 | AT3G26935.1 | 31.410 | 156 | 94 | 5 | 75 | 225 | 126 | 273 | 1.03e-16 | 80.1 |
| Msa0670740 | AT3G51390.2 | 29.282 | 181 | 120 | 3 | 105 | 285 | 159 | 331 | 6.58e-16 | 77.0 |
| Msa0670740 | AT3G51390.1 | 29.282 | 181 | 120 | 3 | 105 | 285 | 164 | 336 | 7.05e-16 | 77.0 |
| Msa0670740 | AT2G14255.1 | 28.794 | 257 | 156 | 8 | 16 | 256 | 275 | 520 | 7.75e-16 | 77.8 |
| Msa0670740 | AT3G18620.1 | 36.538 | 104 | 55 | 2 | 104 | 196 | 149 | 252 | 2.12e-15 | 75.9 |
| Msa0670740 | AT3G04970.3 | 31.156 | 199 | 99 | 8 | 65 | 235 | 39 | 227 | 4.24e-15 | 74.7 |
| Msa0670740 | AT3G04970.1 | 31.156 | 199 | 99 | 8 | 65 | 235 | 126 | 314 | 1.04e-14 | 74.3 |
| Msa0670740 | AT3G56930.2 | 30.636 | 173 | 72 | 6 | 75 | 247 | 123 | 247 | 1.85e-14 | 73.6 |
| Msa0670740 | AT3G04970.2 | 31.492 | 181 | 96 | 7 | 65 | 222 | 126 | 301 | 4.85e-14 | 71.6 |
| Msa0670740 | AT1G69420.1 | 31.579 | 152 | 92 | 3 | 104 | 243 | 164 | 315 | 4.72e-13 | 69.7 |
| Msa0670740 | AT1G69420.2 | 31.579 | 152 | 92 | 3 | 104 | 243 | 164 | 315 | 4.72e-13 | 69.7 |
| Msa0670740 | AT5G20350.1 | 30.846 | 201 | 116 | 7 | 73 | 256 | 334 | 528 | 5.73e-13 | 69.3 |
| Msa0670740 | AT3G22180.1 | 25.000 | 192 | 121 | 5 | 63 | 242 | 143 | 323 | 2.63e-11 | 64.3 |
| Msa0670740 | AT4G15080.2 | 29.586 | 169 | 96 | 5 | 93 | 242 | 161 | 325 | 3.95e-11 | 63.9 |
| Msa0670740 | AT4G15080.1 | 29.586 | 169 | 96 | 5 | 93 | 242 | 161 | 325 | 3.95e-11 | 63.9 |
Find 85 sgRNAs with CRISPR-Local
Find 305 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCCAGTCTTGTTAGGTTT+TGG | 0.177454 | 4_4:+13493656 | Msa0670740:three_prime_UTR |
| GGTTGTTTCTGGGCTCTTAC+TGG | 0.218961 | 4_4:+13492216 | Msa0670740:intron |
| CGGCTTCGCGTTCTCGTTTC+CGG | 0.221292 | 4_4:+13489075 | Msa0670740:CDS |
| CACAGCCAGCTAAGGATATT+TGG | 0.270678 | 4_4:-13493275 | None:intergenic |
| GCTTATAGTGAGAGCACTTT+TGG | 0.276496 | 4_4:-13491600 | None:intergenic |
| ACACATAATGATATAGTTAA+AGG | 0.276995 | 4_4:-13492241 | None:intergenic |
| CCCCATCTTCCAGTCTTGTT+AGG | 0.286556 | 4_4:+13493650 | Msa0670740:three_prime_UTR |
| GATGAAATGACGACGGTTAC+CGG | 0.290148 | 4_4:-13489094 | None:intergenic |
| CTGCTTCGCTTTCTCGATCA+TGG | 0.338698 | 4_4:-13489038 | None:intergenic |
| GTCTTCATTGATAGATGGTT+TGG | 0.345555 | 4_4:+13489148 | Msa0670740:CDS |
| ACCTAAGTCCAGAACCTATA+TGG | 0.351878 | 4_4:-13493310 | None:intergenic |
| CCTAATCTATGTCTAACAAA+TGG | 0.360201 | 4_4:-13493611 | None:intergenic |
| TTGCGTTTGATTTCATGAAT+AGG | 0.366006 | 4_4:-13489316 | None:intergenic |
| GTAAGGATCACCATTGCATT+TGG | 0.377803 | 4_4:+13491750 | Msa0670740:intron |
| ACGACGGCGTTTATGATTCC+AGG | 0.391763 | 4_4:-13489184 | None:intergenic |
| TCTTCGTCTTCATTGATAGA+TGG | 0.393150 | 4_4:+13489143 | Msa0670740:CDS |
| CTCCCCGTGCACATCATTGC+CGG | 0.397317 | 4_4:+13491623 | Msa0670740:CDS |
| ACAGCAAGCCATATAGGTTC+TGG | 0.412789 | 4_4:+13493302 | Msa0670740:CDS |
| CCATTTGTTAGACATAGATT+AGG | 0.423448 | 4_4:+13493611 | Msa0670740:three_prime_UTR |
| AAGCAGCAACGCGGCGGCGG+CGG | 0.424579 | 4_4:+13489055 | Msa0670740:CDS |
| TCCCCGTGCACATCATTGCC+GGG | 0.424676 | 4_4:+13491624 | Msa0670740:CDS |
| TCATACGGGCCAAGGTCATA+TGG | 0.430628 | 4_4:-13492461 | None:intergenic |
| TGGGACCAAATATCCTTAGC+TGG | 0.447899 | 4_4:+13493270 | Msa0670740:CDS |
| CGGTGCTTTGCAGTGGACTT+TGG | 0.450312 | 4_4:+13493388 | Msa0670740:three_prime_UTR |
| CTCGGGTATATGCAGCAAAC+AGG | 0.454202 | 4_4:-13493537 | None:intergenic |
| GGCTCATCAAGGTGCTGTAA+AGG | 0.454390 | 4_4:+13493739 | Msa0670740:three_prime_UTR |
| GCCATATAGGTTCTGGACTT+AGG | 0.455513 | 4_4:+13493309 | Msa0670740:CDS |
| GCGAAGCAGCAACGCGGCGG+CGG | 0.458234 | 4_4:+13489052 | Msa0670740:CDS |
| CACATAATGATATAGTTAAA+GGG | 0.461586 | 4_4:-13492240 | None:intergenic |
| CTAATCTATGTCTAACAAAT+GGG | 0.465517 | 4_4:-13493610 | None:intergenic |
| ATAGTATTATCTTCAACATC+AGG | 0.475395 | 4_4:-13489292 | None:intergenic |
| GCTCATCAAGGTGCTGTAAA+GGG | 0.476781 | 4_4:+13493740 | Msa0670740:three_prime_UTR |
| TGGCCAACAGCAAGCCATAT+AGG | 0.481073 | 4_4:+13493296 | Msa0670740:CDS |
| ATGAAGGAGTGAGAGCTTTG+TGG | 0.484159 | 4_4:+13492405 | Msa0670740:CDS |
| ACCTAACAAGACTGGAAGAT+GGG | 0.488347 | 4_4:-13493651 | None:intergenic |
| TAGTGAGATCATAGACGGTT+CGG | 0.494795 | 4_4:-13493334 | None:intergenic |
| TTGTGTTGGCAGTATTATGA+AGG | 0.498389 | 4_4:+13492389 | Msa0670740:intron |
| AGCTTTGTGGCTTCAAGAGA+AGG | 0.500113 | 4_4:+13492418 | Msa0670740:CDS |
| GTTGGTAGTCTAGCTTATGA+TGG | 0.500150 | 4_4:+13492065 | Msa0670740:CDS |
| GTGAGCAGGGTGGAGATTTG+AGG | 0.510803 | 4_4:+13491572 | Msa0670740:intron |
| CATCCAAAACCTAACAAGAC+TGG | 0.516170 | 4_4:-13493659 | None:intergenic |
| TATACATTACATAATTGCCT+CGG | 0.517321 | 4_4:-13493555 | None:intergenic |
| ACCCCGGCAATGATGTGCAC+GGG | 0.519740 | 4_4:-13491626 | None:intergenic |
| TCAAATTCTCATACGGGCCA+AGG | 0.521925 | 4_4:-13492469 | None:intergenic |
| ACATAACAATACCACGATAG+AGG | 0.522922 | 4_4:+13492294 | Msa0670740:CDS |
| ACAGATGTCAAATTCTCATA+CGG | 0.523145 | 4_4:-13492476 | None:intergenic |
| ATACATTACATAATTGCCTC+GGG | 0.528147 | 4_4:-13493554 | None:intergenic |
| CTGTTGGCCACAGCCAGCTA+AGG | 0.531280 | 4_4:-13493283 | None:intergenic |
| TACGTAGACGGAACCCGACC+CGG | 0.547766 | 4_4:-13489265 | None:intergenic |
| CAAATATCCTTAGCTGGCTG+TGG | 0.549591 | 4_4:+13493276 | Msa0670740:CDS |
| TGTGGCTTCAAGAGAAGGGT+GGG | 0.551105 | 4_4:+13492423 | Msa0670740:CDS |
| GATTGCCTGCATTTACTCCA+TGG | 0.552216 | 4_4:+13491835 | Msa0670740:CDS |
| TTGGATGAAATGTGCTGTCA+AGG | 0.554984 | 4_4:+13493820 | Msa0670740:three_prime_UTR |
| AAAGCGAAGCAGCAACGCGG+CGG | 0.560120 | 4_4:+13489049 | Msa0670740:CDS |
| AACCTAACAAGACTGGAAGA+TGG | 0.560773 | 4_4:-13493652 | None:intergenic |
| TATAAACATCCATATGACCT+TGG | 0.564631 | 4_4:+13492452 | Msa0670740:CDS |
| ACCGTCTATGATCTCACTAA+AGG | 0.568962 | 4_4:+13493338 | Msa0670740:CDS |
| TAAAAGATGTGTTCTACGAA+TGG | 0.569266 | 4_4:+13491651 | Msa0670740:CDS |
| AGACGGAACCCGACCCGGAT+CGG | 0.579221 | 4_4:-13489260 | None:intergenic |
| TATTCATGAAATCAAACGCA+AGG | 0.586968 | 4_4:+13489318 | Msa0670740:CDS |
| AACCCCGGCAATGATGTGCA+CGG | 0.588357 | 4_4:-13491627 | None:intergenic |
| GCTTTGTGGCTTCAAGAGAA+GGG | 0.589103 | 4_4:+13492419 | Msa0670740:CDS |
| GAACCTATATGGCTTGCTGT+TGG | 0.590025 | 4_4:-13493299 | None:intergenic |
| ACCTTTAGTGAGATCATAGA+CGG | 0.591266 | 4_4:-13493339 | None:intergenic |
| CCCCGTGCACATCATTGCCG+GGG | 0.592790 | 4_4:+13491625 | Msa0670740:CDS |
| CAGATGTCAAATTCTCATAC+GGG | 0.593509 | 4_4:-13492475 | None:intergenic |
| ATTTGGATAAATAACTGTGT+CGG | 0.599774 | 4_4:+13491767 | Msa0670740:CDS |
| AACACACATGAAAGCGATGA+GGG | 0.603614 | 4_4:-13489212 | None:intergenic |
| AGTTATTTATCCAAATGCAA+TGG | 0.610149 | 4_4:-13491760 | None:intergenic |
| TTGTGGCTTCAAGAGAAGGG+TGG | 0.610405 | 4_4:+13492422 | Msa0670740:CDS |
| ACATACCATGGAGTAAATGC+AGG | 0.612415 | 4_4:-13491840 | None:intergenic |
| CCCCGGCAATGATGTGCACG+GGG | 0.613681 | 4_4:-13491625 | None:intergenic |
| CCTAACAAGACTGGAAGATG+GGG | 0.614821 | 4_4:-13493650 | None:intergenic |
| CAAGACTGGAAGATGGGGAA+AGG | 0.623644 | 4_4:-13493645 | None:intergenic |
| ACATCAGGTGTATACGTAGA+CGG | 0.625889 | 4_4:-13489277 | None:intergenic |
| TGGATGAAATGTGCTGTCAA+GGG | 0.628605 | 4_4:+13493821 | Msa0670740:three_prime_UTR |
| GCATGTCATAACCTCTATCG+TGG | 0.648544 | 4_4:-13492305 | None:intergenic |
| CTGTTTGCTGCATATACCCG+AGG | 0.662259 | 4_4:+13493538 | Msa0670740:three_prime_UTR |
| CGGCAATGATGTGCACGGGG+AGG | 0.663843 | 4_4:-13491622 | None:intergenic |
| ATCAATGAAGACGAAGACGG+TGG | 0.672230 | 4_4:-13489137 | None:intergenic |
| TCTATCAATGAAGACGAAGA+CGG | 0.675758 | 4_4:-13489140 | None:intergenic |
| GAGAAAGCGAAGCAGCAACG+CGG | 0.693256 | 4_4:+13489046 | Msa0670740:CDS |
| AAACACACATGAAAGCGATG+AGG | 0.694189 | 4_4:-13489213 | None:intergenic |
| AGCGATGAGGGTGAAAACGA+CGG | 0.709154 | 4_4:-13489200 | None:intergenic |
| AGCGATTGATGAAATGACGA+CGG | 0.729992 | 4_4:-13489101 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTCTTTTTTGTTTTAATT+TGG | + | chr4_4:13489411-13489430 | Msa0670740:intron | 15.0% |
| !!! | GATTTTTTGCTTATTTAATT+GGG | + | chr4_4:13489433-13489452 | Msa0670740:intron | 15.0% |
| !!! | ATTTTTTGCTTATTTAATTG+GGG | + | chr4_4:13489434-13489453 | Msa0670740:intron | 15.0% |
| !! | ATAAATAAATATTGTGTACT+AGG | - | chr4_4:13491326-13491345 | None:intergenic | 15.0% |
| !!! | ATCTTTTTTGAATAAACATT+TGG | + | chr4_4:13492651-13492670 | Msa0670740:intron | 15.0% |
| !!! | TATTTTATGTATCTTGTAAT+TGG | + | chr4_4:13493801-13493820 | Msa0670740:three_prime_UTR | 15.0% |
| !!! | TATTTTATGTATCTTGTAAT+TGG | + | chr4_4:13493801-13493820 | Msa0670740:three_prime_UTR | 15.0% |
| !!! | TTTTGCATTGTTATGAATAT+TGG | + | chr4_4:13489355-13489374 | Msa0670740:intron | 20.0% |
| !! | TTTGCATTGTTATGAATATT+GGG | + | chr4_4:13489356-13489375 | Msa0670740:intron | 20.0% |
| !!! | GGATTTTTTGCTTATTTAAT+TGG | + | chr4_4:13489432-13489451 | Msa0670740:intron | 20.0% |
| !! | AAAAAAAACATCATGATAGT+GGG | - | chr4_4:13490228-13490247 | None:intergenic | 20.0% |
| !! | AAAAAAAAACATCATGATAG+TGG | - | chr4_4:13490229-13490248 | None:intergenic | 20.0% |
| !! | TCTACAATATTAAGAATTAG+AGG | - | chr4_4:13490305-13490324 | None:intergenic | 20.0% |
| !! | GAAAATGATTTCAATATGTT+TGG | + | chr4_4:13491043-13491062 | Msa0670740:intron | 20.0% |
| !! | AACAAGTAAAATTAATCCAA+TGG | + | chr4_4:13491394-13491413 | Msa0670740:intron | 20.0% |
| !! | TAAAATAAACAAACATACCA+TGG | - | chr4_4:13491855-13491874 | None:intergenic | 20.0% |
| !! | AAATTGTTTACTTTACTGAA+GGG | - | chr4_4:13492167-13492186 | None:intergenic | 20.0% |
| !! | AAAATTGTTTACTTTACTGA+AGG | - | chr4_4:13492168-13492187 | None:intergenic | 20.0% |
| !! | CACATAATGATATAGTTAAA+GGG | - | chr4_4:13492243-13492262 | None:intergenic | 20.0% |
| !! | ACACATAATGATATAGTTAA+AGG | - | chr4_4:13492244-13492263 | None:intergenic | 20.0% |
| !!! | ATATCATTATGTGTTCTTTT+AGG | + | chr4_4:13492250-13492269 | Msa0670740:CDS | 20.0% |
| !!! | TTTTTCTTTCTTCTTTCATT+TGG | + | chr4_4:13492625-13492644 | Msa0670740:intron | 20.0% |
| !! | TTTCTTTATGCAAACATAAA+TGG | - | chr4_4:13492904-13492923 | None:intergenic | 20.0% |
| !! | ATGTAAAAAAATTACATCGT+TGG | - | chr4_4:13492955-13492974 | None:intergenic | 20.0% |
| !!! | TCAATCATTAGAATTTTCAA+TGG | + | chr4_4:13493143-13493162 | Msa0670740:intron | 20.0% |
| !! | AAAAAAGAAGTTGAAGAAAA+GGG | - | chr4_4:13493172-13493191 | None:intergenic | 20.0% |
| !! | TAAAAAAGAAGTTGAAGAAA+AGG | - | chr4_4:13493173-13493192 | None:intergenic | 20.0% |
| !!! | TGTTTTGTTTATTTTTTTGC+AGG | + | chr4_4:13493244-13493263 | Msa0670740:intron | 20.0% |
| !!! | TTTATTTTTTTGCAGGTTTT+GGG | + | chr4_4:13493251-13493270 | Msa0670740:intron | 20.0% |
| !!! | TAACAAATGGGTTAAAAAAA+AGG | - | chr4_4:13493601-13493620 | None:intergenic | 20.0% |
| !! | CTAATGTACAAAAAGAAAAA+CGG | + | chr4_4:13493718-13493737 | Msa0670740:three_prime_UTR | 20.0% |
| !!! | TAAAATACAACTTTTCACAA+TGG | - | chr4_4:13493858-13493877 | None:intergenic | 20.0% |
| ! | ATAGTATTATCTTCAACATC+AGG | - | chr4_4:13489295-13489314 | None:intergenic | 25.0% |
| ! | AGATATGATTAATGATCCAT+TGG | + | chr4_4:13489657-13489676 | Msa0670740:intron | 25.0% |
| !!! | GATTTTTAACTAAAACACGT+CGG | - | chr4_4:13489713-13489732 | None:intergenic | 25.0% |
| !!! | TTTATGTGTGATTTGTTATG+TGG | + | chr4_4:13489840-13489859 | Msa0670740:intron | 25.0% |
| !!! | TTGTTTTTGTTGTTAATCTG+CGG | + | chr4_4:13489992-13490011 | Msa0670740:intron | 25.0% |
| ! | ATACAAACACAACAAAAAGA+AGG | - | chr4_4:13490714-13490733 | None:intergenic | 25.0% |
| !! | AAACTAGTTAGCATTTTCTT+AGG | - | chr4_4:13490826-13490845 | None:intergenic | 25.0% |
| ! | ACTAGTTAAGGAATCAAATA+TGG | + | chr4_4:13490855-13490874 | Msa0670740:intron | 25.0% |
| ! | TATGGTAAAACTTTCTTGAA+AGG | + | chr4_4:13490873-13490892 | Msa0670740:intron | 25.0% |
| ! | TCATAGGTAATTAGGAATAT+GGG | - | chr4_4:13491002-13491021 | None:intergenic | 25.0% |
| ! | TGAGCATTAATTAGGAATAT+GGG | - | chr4_4:13491166-13491185 | None:intergenic | 25.0% |
| ! | ATGAGCATTAATTAGGAATA+TGG | - | chr4_4:13491167-13491186 | None:intergenic | 25.0% |
| ! | ATACACAATCACATGTTTAT+GGG | - | chr4_4:13491498-13491517 | None:intergenic | 25.0% |
| !!! | TTCCAGTGATGTTTTTTTTT+TGG | + | chr4_4:13491545-13491564 | Msa0670740:intron | 25.0% |
| ! | TTCCAAAAAAAAAACATCAC+TGG | - | chr4_4:13491550-13491569 | None:intergenic | 25.0% |
| !!! | TCATCAATCAAGTTTTATCT+TGG | + | chr4_4:13491689-13491708 | Msa0670740:intron | 25.0% |
| !!! | CATCAATCAAGTTTTATCTT+GGG | + | chr4_4:13491690-13491709 | Msa0670740:intron | 25.0% |
| !!! | TGACAAAAAGTGTTGTTTAT+TGG | + | chr4_4:13491725-13491744 | Msa0670740:intron | 25.0% |
| ! | AGTTATTTATCCAAATGCAA+TGG | - | chr4_4:13491763-13491782 | None:intergenic | 25.0% |
| ! | ATTTGGATAAATAACTGTGT+CGG | + | chr4_4:13491767-13491786 | Msa0670740:CDS | 25.0% |
| !! | CTTCCTTTTGATATTTTTCA+TGG | + | chr4_4:13491966-13491985 | Msa0670740:intron | 25.0% |
| ! | AGACCATGAAAAATATCAAA+AGG | - | chr4_4:13491972-13491991 | None:intergenic | 25.0% |
| !!! | CATGAAATAAACTTTTTTGC+AGG | + | chr4_4:13492195-13492214 | Msa0670740:intron | 25.0% |
| ! | TGATTTCGATTTACTCAATT+AGG | + | chr4_4:13492363-13492382 | Msa0670740:intron | 25.0% |
| ! | TTCATCATGATCATATCATA+TGG | + | chr4_4:13492674-13492693 | Msa0670740:intron | 25.0% |
| ! | CAATTATCACATCAATAAGA+TGG | - | chr4_4:13492792-13492811 | None:intergenic | 25.0% |
| ! | CTTATTGATGTGATAATTGA+CGG | + | chr4_4:13492793-13492812 | Msa0670740:intron | 25.0% |
| !!! | TTCTTTTGTATTCTGAAATC+AGG | + | chr4_4:13492819-13492838 | Msa0670740:intron | 25.0% |
| !!! | ATAGTAATGTGCTATTTGAT+TGG | - | chr4_4:13492984-13493003 | None:intergenic | 25.0% |
| !!! | GTTTATTTTTTTGCAGGTTT+TGG | + | chr4_4:13493250-13493269 | Msa0670740:intron | 25.0% |
| !!! | GTTAAAAAGGCATTGAATTT+GGG | - | chr4_4:13493478-13493497 | None:intergenic | 25.0% |
| ! | TATACATTACATAATTGCCT+CGG | - | chr4_4:13493558-13493577 | None:intergenic | 25.0% |
| ! | CTAATCTATGTCTAACAAAT+GGG | - | chr4_4:13493613-13493632 | None:intergenic | 25.0% |
| !! | CGTTTTTCTTTTTGTACATT+AGG | - | chr4_4:13493720-13493739 | None:intergenic | 25.0% |
| !! | TAAGATACAACTTTTCACAA+TGG | - | chr4_4:13493775-13493794 | None:intergenic | 25.0% |
| ! | TTGCGTTTGATTTCATGAAT+AGG | - | chr4_4:13489319-13489338 | None:intergenic | 30.0% |
| TATTCATGAAATCAAACGCA+AGG | + | chr4_4:13489318-13489337 | Msa0670740:CDS | 30.0% | |
| CATTAAGCTCGTATAAAACT+TGG | - | chr4_4:13489488-13489507 | None:intergenic | 30.0% | |
| ACGTCGGAATTATTGAATAT+CGG | - | chr4_4:13489697-13489716 | None:intergenic | 30.0% | |
| !! | TTTGTTATGTGGTGAGTTTT+TGG | + | chr4_4:13489851-13489870 | Msa0670740:intron | 30.0% |
| ! | TGTTAATGTAGTCTTGATCA+AGG | + | chr4_4:13490062-13490081 | Msa0670740:intron | 30.0% |
| ! | TATACCGCAACAATATTTTG+GGG | - | chr4_4:13490430-13490449 | None:intergenic | 30.0% |
| ! | CTATACCGCAACAATATTTT+GGG | - | chr4_4:13490431-13490450 | None:intergenic | 30.0% |
| AAAATATTGTTGCGGTATAG+CGG | + | chr4_4:13490431-13490450 | Msa0670740:intron | 30.0% | |
| CGTATTGTTTCCTTAATCTT+CGG | - | chr4_4:13490477-13490496 | None:intergenic | 30.0% | |
| AACTGATCCAAAATAAACTG+AGG | + | chr4_4:13490534-13490553 | Msa0670740:intron | 30.0% | |
| TCCAAAATAAACTGAGGTAA+TGG | + | chr4_4:13490540-13490559 | Msa0670740:intron | 30.0% | |
| ! | TATAAGTTGAGGGCATATTT+GGG | + | chr4_4:13490564-13490583 | Msa0670740:intron | 30.0% |
| TTGTTTAGTAGTGACTGTAT+TGG | - | chr4_4:13490626-13490645 | None:intergenic | 30.0% | |
| GTTGTGTTTGTATTTGAGAA+AGG | + | chr4_4:13490721-13490740 | Msa0670740:intron | 30.0% | |
| ACTAGTGAAGGAAAACAAAA+AGG | - | chr4_4:13490954-13490973 | None:intergenic | 30.0% | |
| CTCATAGGTAATTAGGAATA+TGG | - | chr4_4:13491003-13491022 | None:intergenic | 30.0% | |
| AGTCATACTCATAGGTAATT+AGG | - | chr4_4:13491010-13491029 | None:intergenic | 30.0% | |
| AACACATTAGTCATACTCAT+AGG | - | chr4_4:13491018-13491037 | None:intergenic | 30.0% | |
| TATGAGTATGACTAATGTGT+TGG | + | chr4_4:13491017-13491036 | Msa0670740:intron | 30.0% | |
| !! | TTCAATATGTTTGGTTTGAC+TGG | + | chr4_4:13491052-13491071 | Msa0670740:intron | 30.0% |
| !! | TCAATATGTTTGGTTTGACT+GGG | + | chr4_4:13491053-13491072 | Msa0670740:intron | 30.0% |
| TGGAAAAATATCAGCTTCTA+GGG | - | chr4_4:13491099-13491118 | None:intergenic | 30.0% | |
| ! | TGATATTTTTCCACAGACTA+AGG | + | chr4_4:13491106-13491125 | Msa0670740:intron | 30.0% |
| AAAAGTAAAACCTTAGTCTG+TGG | - | chr4_4:13491119-13491138 | None:intergenic | 30.0% | |
| GAATATGGGCTTAATTAACT+AGG | - | chr4_4:13491152-13491171 | None:intergenic | 30.0% | |
| TGTTATATTAAGTGAGCCAT+TGG | - | chr4_4:13491413-13491432 | None:intergenic | 30.0% | |
| GATACACAATCACATGTTTA+TGG | - | chr4_4:13491499-13491518 | None:intergenic | 30.0% | |
| ! | CACTGGAAAGTTAATTTTCA+TGG | - | chr4_4:13491533-13491552 | None:intergenic | 30.0% |
| TAAAAGATGTGTTCTACGAA+TGG | + | chr4_4:13491651-13491670 | Msa0670740:CDS | 30.0% | |
| !! | AAGTTTTATCTTGGGCTTTT+TGG | + | chr4_4:13491698-13491717 | Msa0670740:intron | 30.0% |
| !! | AGTGTTGTTTATTGGTTGTA+AGG | + | chr4_4:13491733-13491752 | Msa0670740:intron | 30.0% |
| AAGGAAGAGAAAACTAAATC+AGG | - | chr4_4:13491953-13491972 | None:intergenic | 30.0% | |
| ! | TCAATGTTGCTTAACTTTGT+AGG | + | chr4_4:13492034-13492053 | Msa0670740:intron | 30.0% |
| ! | ACTTTGTAGGTTTTACTTGT+TGG | + | chr4_4:13492047-13492066 | Msa0670740:intron | 30.0% |
| ATACACGATGAAGACAAAAA+TGG | + | chr4_4:13492089-13492108 | Msa0670740:CDS | 30.0% | |
| !! | CATTATGTGTTCTTTTAGGA+TGG | + | chr4_4:13492254-13492273 | Msa0670740:CDS | 30.0% |
| TGAGTAAATCGAAATCATTC+TGG | - | chr4_4:13492360-13492379 | None:intergenic | 30.0% | |
| TATAAACATCCATATGACCT+TGG | + | chr4_4:13492452-13492471 | Msa0670740:CDS | 30.0% | |
| ACAGATGTCAAATTCTCATA+CGG | - | chr4_4:13492479-13492498 | None:intergenic | 30.0% | |
| AGTTCAATGAGAAAAAAGCA+GGG | - | chr4_4:13492563-13492582 | None:intergenic | 30.0% | |
| AAGTTCAATGAGAAAAAAGC+AGG | - | chr4_4:13492564-13492583 | None:intergenic | 30.0% | |
| CTCATTGAACTTCATTCATT+TGG | + | chr4_4:13492572-13492591 | Msa0670740:intron | 30.0% | |
| ! | TTTTCCTTTCTGCAATCATT+TGG | + | chr4_4:13492599-13492618 | Msa0670740:intron | 30.0% |
| AACGCTTTCAAATAATAGCT+AGG | - | chr4_4:13492744-13492763 | None:intergenic | 30.0% | |
| AACATAATTCAACTCAACTG+AGG | + | chr4_4:13492765-13492784 | Msa0670740:intron | 30.0% | |
| GTTTCACATAATCAGTTAAG+CGG | - | chr4_4:13493023-13493042 | None:intergenic | 30.0% | |
| GATACTATAATCAGATGTGA+AGG | + | chr4_4:13493061-13493080 | Msa0670740:intron | 30.0% | |
| ! | ACATCTAAGTGAAGTTTTCA+CGG | + | chr4_4:13493368-13493387 | Msa0670740:exon | 30.0% |
| !! | CGTTAAAAAGGCATTGAATT+TGG | - | chr4_4:13493479-13493498 | None:intergenic | 30.0% |
| !! | GTTGGTGATTTACGTTAAAA+AGG | - | chr4_4:13493491-13493510 | None:intergenic | 30.0% |
| ATACATTACATAATTGCCTC+GGG | - | chr4_4:13493557-13493576 | None:intergenic | 30.0% | |
| CCTAATCTATGTCTAACAAA+TGG | - | chr4_4:13493614-13493633 | None:intergenic | 30.0% | |
| ! | CCATTTGTTAGACATAGATT+AGG | + | chr4_4:13493611-13493630 | Msa0670740:three_prime_UTR | 30.0% |
| TCTATCAATGAAGACGAAGA+CGG | - | chr4_4:13489143-13489162 | None:intergenic | 35.0% | |
| TCTTCGTCTTCATTGATAGA+TGG | + | chr4_4:13489143-13489162 | Msa0670740:CDS | 35.0% | |
| GTCTTCATTGATAGATGGTT+TGG | + | chr4_4:13489148-13489167 | Msa0670740:CDS | 35.0% | |
| GATCGGTGAAAATAGCTAAA+CGG | - | chr4_4:13489246-13489265 | None:intergenic | 35.0% | |
| !! | TTTAGCTATTTTCACCGATC+CGG | + | chr4_4:13489246-13489265 | Msa0670740:intron | 35.0% |
| GGTCAATCAATCATAACCAA+TGG | - | chr4_4:13489676-13489695 | None:intergenic | 35.0% | |
| !!! | TTTTTGTTGTTAATCTGCGG+TGG | + | chr4_4:13489995-13490014 | Msa0670740:intron | 35.0% |
| CTTAACCTATCCAGCTAAAA+GGG | - | chr4_4:13490028-13490047 | None:intergenic | 35.0% | |
| TGGATAGGTTAAGCAATAGT+AGG | + | chr4_4:13490035-13490054 | Msa0670740:intron | 35.0% | |
| !! | TGTAGTCTTGATCAAGGTTT+TGG | + | chr4_4:13490068-13490087 | Msa0670740:intron | 35.0% |
| !! | GTAGTCTTGATCAAGGTTTT+GGG | + | chr4_4:13490069-13490088 | Msa0670740:intron | 35.0% |
| GCGGTTACTTCATAATTCTT+AGG | + | chr4_4:13490106-13490125 | Msa0670740:intron | 35.0% | |
| !! | AAAAACATCATGATAGTGGG+AGG | - | chr4_4:13490225-13490244 | None:intergenic | 35.0% |
| !! | ATACCGCAACAATATTTTGG+GGG | - | chr4_4:13490429-13490448 | None:intergenic | 35.0% |
| ! | GCTATACCGCAACAATATTT+TGG | - | chr4_4:13490432-13490451 | None:intergenic | 35.0% |
| AAATATTGTTGCGGTATAGC+GGG | + | chr4_4:13490432-13490451 | Msa0670740:intron | 35.0% | |
| ! | GCCATTACCTCAGTTTATTT+TGG | - | chr4_4:13490544-13490563 | None:intergenic | 35.0% |
| ! | AGGTAATGGCTATAAGTTGA+GGG | + | chr4_4:13490554-13490573 | Msa0670740:intron | 35.0% |
| ! | CTATAAGTTGAGGGCATATT+TGG | + | chr4_4:13490563-13490582 | Msa0670740:intron | 35.0% |
| ! | ATAAGTTGAGGGCATATTTG+GGG | + | chr4_4:13490565-13490584 | Msa0670740:intron | 35.0% |
| TTAATCTGCATGATCAACAG+TGG | - | chr4_4:13490685-13490704 | None:intergenic | 35.0% | |
| ! | ATGTCATGTGTTGATGTGTT+TGG | + | chr4_4:13490781-13490800 | Msa0670740:intron | 35.0% |
| TAGGAATATAACGCAACAGA+AGG | - | chr4_4:13490807-13490826 | None:intergenic | 35.0% | |
| ! | AAAATGCTAACTAGTTTCCC+TGG | + | chr4_4:13490829-13490848 | Msa0670740:intron | 35.0% |
| ! | AAATGCTAACTAGTTTCCCT+GGG | + | chr4_4:13490830-13490849 | Msa0670740:intron | 35.0% |
| GGAAAAATATCAGCTTCTAG+GGG | - | chr4_4:13491098-13491117 | None:intergenic | 35.0% | |
| GTGGAAAAATATCAGCTTCT+AGG | - | chr4_4:13491100-13491119 | None:intergenic | 35.0% | |
| CCAGCATATGAGCATTAATT+AGG | - | chr4_4:13491174-13491193 | None:intergenic | 35.0% | |
| CCTAATTAATGCTCATATGC+TGG | + | chr4_4:13491171-13491190 | Msa0670740:intron | 35.0% | |
| !!! | TCATATGCTGGCTTTTAAAG+TGG | + | chr4_4:13491183-13491202 | Msa0670740:intron | 35.0% |
| GTAAAGATGACCTCTTTCAA+GGG | - | chr4_4:13491232-13491251 | None:intergenic | 35.0% | |
| AGTAAAGATGACCTCTTTCA+AGG | - | chr4_4:13491233-13491252 | None:intergenic | 35.0% | |
| TATCCATACCACATCAAATG+CGG | - | chr4_4:13491303-13491322 | None:intergenic | 35.0% | |
| !!! | TTTTTTTTGGAACTGTGAGC+AGG | + | chr4_4:13491558-13491577 | Msa0670740:intron | 35.0% |
| !!! | TTTTTTTGGAACTGTGAGCA+GGG | + | chr4_4:13491559-13491578 | Msa0670740:intron | 35.0% |
| ATTTGCGTGAATGAAATCTG+TGG | + | chr4_4:13491927-13491946 | Msa0670740:intron | 35.0% | |
| !!! | ACTTTTTTGCAGGTTGTTTC+TGG | + | chr4_4:13492205-13492224 | Msa0670740:intron | 35.0% |
| !!! | CTTTTTTGCAGGTTGTTTCT+GGG | + | chr4_4:13492206-13492225 | Msa0670740:intron | 35.0% |
| ACATAACAATACCACGATAG+AGG | + | chr4_4:13492294-13492313 | Msa0670740:CDS | 35.0% | |
| ACTCAATTAGGAAGTTGTGT+TGG | + | chr4_4:13492375-13492394 | Msa0670740:intron | 35.0% | |
| ! | TTGTGTTGGCAGTATTATGA+AGG | + | chr4_4:13492389-13492408 | Msa0670740:intron | 35.0% |
| CAGATGTCAAATTCTCATAC+GGG | - | chr4_4:13492478-13492497 | None:intergenic | 35.0% | |
| ATGACCAAATGATTGCAGAA+AGG | - | chr4_4:13492606-13492625 | None:intergenic | 35.0% | |
| ACCTTTAGTGAGATCATAGA+CGG | - | chr4_4:13493342-13493361 | None:intergenic | 35.0% | |
| !!! | TTGTTAGGTTTTGGATGATG+TGG | + | chr4_4:13493665-13493684 | Msa0670740:three_prime_UTR | 35.0% |
| !!! | TGTTAGGTTTTGGATGATGT+GGG | + | chr4_4:13493666-13493685 | Msa0670740:three_prime_UTR | 35.0% |
| AAAAGAAAAACGGCTCATCA+AGG | + | chr4_4:13493728-13493747 | Msa0670740:three_prime_UTR | 35.0% | |
| AGCGATTGATGAAATGACGA+CGG | - | chr4_4:13489104-13489123 | None:intergenic | 40.0% | |
| !! | TTTGGTCTTTTCTCTTCACC+TGG | + | chr4_4:13489166-13489185 | Msa0670740:CDS | 40.0% |
| AACACACATGAAAGCGATGA+GGG | - | chr4_4:13489215-13489234 | None:intergenic | 40.0% | |
| AAACACACATGAAAGCGATG+AGG | - | chr4_4:13489216-13489235 | None:intergenic | 40.0% | |
| !! | TTAGCTATTTTCACCGATCC+GGG | + | chr4_4:13489247-13489266 | Msa0670740:intron | 40.0% |
| ACATCAGGTGTATACGTAGA+CGG | - | chr4_4:13489280-13489299 | None:intergenic | 40.0% | |
| GCTTAACCTATCCAGCTAAA+AGG | - | chr4_4:13490029-13490048 | None:intergenic | 40.0% | |
| GTGTAATTCTTGCGTTTCCT+AGG | + | chr4_4:13490253-13490272 | Msa0670740:intron | 40.0% | |
| CAACCCCCAAAATATTGTTG+CGG | + | chr4_4:13490423-13490442 | Msa0670740:intron | 40.0% | |
| ! | TTCCTTAATCTTCGGTGTAG+CGG | - | chr4_4:13490469-13490488 | None:intergenic | 40.0% |
| ! | GAGGTAATGGCTATAAGTTG+AGG | + | chr4_4:13490553-13490572 | Msa0670740:intron | 40.0% |
| !! | GGCATATTTGGGGTTTTTAC+CGG | + | chr4_4:13490575-13490594 | Msa0670740:intron | 40.0% |
| TTACCGGAGTTTCATTGTAG+TGG | + | chr4_4:13490591-13490610 | Msa0670740:intron | 40.0% | |
| !! | AGTGACTGTATTGGCTAGTA+TGG | - | chr4_4:13490617-13490636 | None:intergenic | 40.0% |
| ACTAAACAAACGCAGCACAA+TGG | + | chr4_4:13490637-13490656 | Msa0670740:intron | 40.0% | |
| CTAAACAAACGCAGCACAAT+GGG | + | chr4_4:13490638-13490657 | Msa0670740:intron | 40.0% | |
| TAAACAAACGCAGCACAATG+GGG | + | chr4_4:13490639-13490658 | Msa0670740:intron | 40.0% | |
| ! | AATGCTAACTAGTTTCCCTG+GGG | + | chr4_4:13490831-13490850 | Msa0670740:intron | 40.0% |
| !! | AAAGTGGACTGTCGTATATG+CGG | + | chr4_4:13491199-13491218 | Msa0670740:intron | 40.0% |
| GACAATGTTGTATACGAGTC+TGG | + | chr4_4:13491259-13491278 | Msa0670740:intron | 40.0% | |
| TGTATACGAGTCTGGCTATA+AGG | + | chr4_4:13491267-13491286 | Msa0670740:intron | 40.0% | |
| ATACTAACCCGCATTTGATG+TGG | + | chr4_4:13491292-13491311 | Msa0670740:intron | 40.0% | |
| ATCCATACCACATCAAATGC+GGG | - | chr4_4:13491302-13491321 | None:intergenic | 40.0% | |
| !!! | GCTTATAGTGAGAGCACTTT+TGG | - | chr4_4:13491603-13491622 | None:intergenic | 40.0% |
| ! | GAACACATCTTTTACAACCC+CGG | - | chr4_4:13491645-13491664 | None:intergenic | 40.0% |
| GTAAGGATCACCATTGCATT+TGG | + | chr4_4:13491750-13491769 | Msa0670740:intron | 40.0% | |
| ACATACCATGGAGTAAATGC+AGG | - | chr4_4:13491843-13491862 | None:intergenic | 40.0% | |
| TCATTCACGCAAATACAACG+TGG | - | chr4_4:13491921-13491940 | None:intergenic | 40.0% | |
| ATGGTCTGTGCTAGATTTGA+TGG | + | chr4_4:13491985-13492004 | Msa0670740:intron | 40.0% | |
| !! | GTTGGTAGTCTAGCTTATGA+TGG | + | chr4_4:13492065-13492084 | Msa0670740:CDS | 40.0% |
| CACGATGAAGACAAAAATGG+CGG | + | chr4_4:13492092-13492111 | Msa0670740:CDS | 40.0% | |
| CAATGAGAAAAAAGCAGGGT+GGG | - | chr4_4:13492559-13492578 | None:intergenic | 40.0% | |
| TCAATGAGAAAAAAGCAGGG+TGG | - | chr4_4:13492560-13492579 | None:intergenic | 40.0% | |
| GCTGATCAGTGAAAAAGTCA+TGG | - | chr4_4:13492722-13492741 | None:intergenic | 40.0% | |
| ACCTAAGTCCAGAACCTATA+TGG | - | chr4_4:13493313-13493332 | None:intergenic | 40.0% | |
| TAGTGAGATCATAGACGGTT+CGG | - | chr4_4:13493337-13493356 | None:intergenic | 40.0% | |
| ACCGTCTATGATCTCACTAA+AGG | + | chr4_4:13493338-13493357 | Msa0670740:CDS | 40.0% | |
| ACCAACAATTGCTGAAGTGT+AGG | + | chr4_4:13493505-13493524 | Msa0670740:intron | 40.0% | |
| ACCTACACTTCAGCAATTGT+TGG | - | chr4_4:13493509-13493528 | None:intergenic | 40.0% | |
| ACCTAACAAGACTGGAAGAT+GGG | - | chr4_4:13493654-13493673 | None:intergenic | 40.0% | |
| AACCTAACAAGACTGGAAGA+TGG | - | chr4_4:13493655-13493674 | None:intergenic | 40.0% | |
| !!! | CTTCCAGTCTTGTTAGGTTT+TGG | + | chr4_4:13493656-13493675 | Msa0670740:three_prime_UTR | 40.0% |
| CATCCAAAACCTAACAAGAC+TGG | - | chr4_4:13493662-13493681 | None:intergenic | 40.0% | |
| !!! | GTTAGGTTTTGGATGATGTG+GGG | + | chr4_4:13493667-13493686 | Msa0670740:three_prime_UTR | 40.0% |
| TTGGATGAAATGTGCTGTCA+AGG | + | chr4_4:13493820-13493839 | Msa0670740:three_prime_UTR | 40.0% | |
| TGGATGAAATGTGCTGTCAA+GGG | + | chr4_4:13493821-13493840 | Msa0670740:three_prime_UTR | 40.0% | |
| GATGAAATGACGACGGTTAC+CGG | - | chr4_4:13489097-13489116 | None:intergenic | 45.0% | |
| ATCAATGAAGACGAAGACGG+TGG | - | chr4_4:13489140-13489159 | None:intergenic | 45.0% | |
| ATGAGCTACGACAAATCACG+TGG | + | chr4_4:13489525-13489544 | Msa0670740:intron | 45.0% | |
| ! | TGGAATGCTTCCCTTTTAGC+TGG | + | chr4_4:13490015-13490034 | Msa0670740:intron | 45.0% |
| !! | TGCTTCCCTTTTAGCTGGAT+AGG | + | chr4_4:13490020-13490039 | Msa0670740:intron | 45.0% |
| !!! | TGATCAAGGTTTTGGGAGCT+TGG | + | chr4_4:13490076-13490095 | Msa0670740:intron | 45.0% |
| !! | AACATCATGATAGTGGGAGG+TGG | - | chr4_4:13490222-13490241 | None:intergenic | 45.0% |
| TTGAGCGAAGACTAACACCT+AGG | - | chr4_4:13490273-13490292 | None:intergenic | 45.0% | |
| !! | CGCAACAATATTTTGGGGGT+TGG | - | chr4_4:13490425-13490444 | None:intergenic | 45.0% |
| TGGCCACTACAATGAAACTC+CGG | - | chr4_4:13490597-13490616 | None:intergenic | 45.0% | |
| CATGATCAACAGTGGCACTT+AGG | - | chr4_4:13490677-13490696 | None:intergenic | 45.0% | |
| ATTCCTTAACTAGTGCCCCA+GGG | - | chr4_4:13490849-13490868 | None:intergenic | 45.0% | |
| AACCCGCATTTGATGTGGTA+TGG | + | chr4_4:13491297-13491316 | Msa0670740:intron | 45.0% | |
| ACTTCGTTGAACCATTCACG+TGG | + | chr4_4:13491437-13491456 | Msa0670740:intron | 45.0% | |
| ACCATTCACGTGGCAGAAAA+AGG | + | chr4_4:13491447-13491466 | Msa0670740:intron | 45.0% | |
| ! | TCCTTTTTCTGCCACGTGAA+TGG | - | chr4_4:13491451-13491470 | None:intergenic | 45.0% |
| GATTGCCTGCATTTACTCCA+TGG | + | chr4_4:13491835-13491854 | Msa0670740:CDS | 45.0% | |
| TCACGCAAATACAACGTGGT+AGG | - | chr4_4:13491917-13491936 | None:intergenic | 45.0% | |
| GCATGTCATAACCTCTATCG+TGG | - | chr4_4:13492308-13492327 | None:intergenic | 45.0% | |
| ATGAAGGAGTGAGAGCTTTG+TGG | + | chr4_4:13492405-13492424 | Msa0670740:CDS | 45.0% | |
| ! | AGCTTTGTGGCTTCAAGAGA+AGG | + | chr4_4:13492418-13492437 | Msa0670740:CDS | 45.0% |
| GCTTTGTGGCTTCAAGAGAA+GGG | + | chr4_4:13492419-13492438 | Msa0670740:CDS | 45.0% | |
| TCAAATTCTCATACGGGCCA+AGG | - | chr4_4:13492472-13492491 | None:intergenic | 45.0% | |
| TCAGATGTGAAGGTGACAGA+TGG | + | chr4_4:13493071-13493090 | Msa0670740:intron | 45.0% | |
| TGGGACCAAATATCCTTAGC+TGG | + | chr4_4:13493270-13493289 | Msa0670740:CDS | 45.0% | |
| CACAGCCAGCTAAGGATATT+TGG | - | chr4_4:13493278-13493297 | None:intergenic | 45.0% | |
| CAAATATCCTTAGCTGGCTG+TGG | + | chr4_4:13493276-13493295 | Msa0670740:CDS | 45.0% | |
| !! | GAACCTATATGGCTTGCTGT+TGG | - | chr4_4:13493302-13493321 | None:intergenic | 45.0% |
| ACAGCAAGCCATATAGGTTC+TGG | + | chr4_4:13493302-13493321 | Msa0670740:CDS | 45.0% | |
| !! | GCCATATAGGTTCTGGACTT+AGG | + | chr4_4:13493309-13493328 | Msa0670740:CDS | 45.0% |
| CCTAACAAGACTGGAAGATG+GGG | - | chr4_4:13493653-13493672 | None:intergenic | 45.0% | |
| !! | GCTCATCAAGGTGCTGTAAA+GGG | + | chr4_4:13493740-13493759 | Msa0670740:three_prime_UTR | 45.0% |
| ACGACGGCGTTTATGATTCC+AGG | - | chr4_4:13489187-13489206 | None:intergenic | 50.0% | |
| AGCGATGAGGGTGAAAACGA+CGG | - | chr4_4:13489203-13489222 | None:intergenic | 50.0% | |
| ! | CTATTTTCACCGATCCGGGT+CGG | + | chr4_4:13489251-13489270 | Msa0670740:CDS | 50.0% |
| ! | TATTTTCACCGATCCGGGTC+GGG | + | chr4_4:13489252-13489271 | Msa0670740:CDS | 50.0% |
| TTCATGAGCTGTCAGCTCAG+TGG | - | chr4_4:13489756-13489775 | None:intergenic | 50.0% | |
| !! | ATCATGATAGTGGGAGGTGG+CGG | - | chr4_4:13490219-13490238 | None:intergenic | 50.0% |
| GCGCATCAGTTGTACTCAAC+TGG | - | chr4_4:13490333-13490352 | None:intergenic | 50.0% | |
| AACTGATGCGCGCACATTTG+TGG | + | chr4_4:13490342-13490361 | Msa0670740:intron | 50.0% | |
| ! | TATTGTTGCGGTATAGCGGG+TGG | + | chr4_4:13490435-13490454 | Msa0670740:intron | 50.0% |
| ! | TTTCCCTGGGGCACTAGTTA+AGG | + | chr4_4:13490843-13490862 | Msa0670740:intron | 50.0% |
| GATTCCTTAACTAGTGCCCC+AGG | - | chr4_4:13490850-13490869 | None:intergenic | 50.0% | |
| ! | GTTTTCCTTCACTAGTGCCC+CGG | + | chr4_4:13490958-13490977 | Msa0670740:intron | 50.0% |
| ! | TTTTCCTTCACTAGTGCCCC+GGG | + | chr4_4:13490959-13490978 | Msa0670740:intron | 50.0% |
| CGGTTGTCTTCCCTTGAAAG+AGG | + | chr4_4:13491219-13491238 | Msa0670740:intron | 50.0% | |
| !!! | TTTTGGAACTGTGAGCAGGG+TGG | + | chr4_4:13491562-13491581 | Msa0670740:intron | 50.0% |
| !! | GGTTGTTTCTGGGCTCTTAC+TGG | + | chr4_4:13492216-13492235 | Msa0670740:intron | 50.0% |
| TTGTGGCTTCAAGAGAAGGG+TGG | + | chr4_4:13492422-13492441 | Msa0670740:CDS | 50.0% | |
| TGTGGCTTCAAGAGAAGGGT+GGG | + | chr4_4:13492423-13492442 | Msa0670740:CDS | 50.0% | |
| TCATACGGGCCAAGGTCATA+TGG | - | chr4_4:13492464-13492483 | None:intergenic | 50.0% | |
| AGCAGGGTGGGAGAAAAAAC+AGG | - | chr4_4:13492547-13492566 | None:intergenic | 50.0% | |
| TGGCCAACAGCAAGCCATAT+AGG | + | chr4_4:13493296-13493315 | Msa0670740:CDS | 50.0% | |
| ! | GTTTTCACGGTGCTTTGCAG+TGG | + | chr4_4:13493381-13493400 | Msa0670740:three_prime_UTR | 50.0% |
| CTCGGGTATATGCAGCAAAC+AGG | - | chr4_4:13493540-13493559 | None:intergenic | 50.0% | |
| ! | CTGTTTGCTGCATATACCCG+AGG | + | chr4_4:13493538-13493557 | Msa0670740:three_prime_UTR | 50.0% |
| CAAGACTGGAAGATGGGGAA+AGG | - | chr4_4:13493648-13493667 | None:intergenic | 50.0% | |
| !! | CCCCATCTTCCAGTCTTGTT+AGG | + | chr4_4:13493650-13493669 | Msa0670740:three_prime_UTR | 50.0% |
| !! | GGCTCATCAAGGTGCTGTAA+AGG | + | chr4_4:13493739-13493758 | Msa0670740:three_prime_UTR | 50.0% |
| GAGAAAGCGAAGCAGCAACG+CGG | + | chr4_4:13489046-13489065 | Msa0670740:CDS | 55.0% | |
| TTGGGAGCTTGGCAGTGTTG+CGG | + | chr4_4:13490087-13490106 | Msa0670740:intron | 55.0% | |
| !! | AGGTGGCGGAAATCAGGTTG+CGG | - | chr4_4:13490205-13490224 | None:intergenic | 55.0% |
| ACTCTGTGGCTGCAACGTCA+AGG | - | chr4_4:13490397-13490416 | None:intergenic | 55.0% | |
| GGCCGCTACACCGAAGATTA+AGG | + | chr4_4:13490464-13490483 | Msa0670740:intron | 55.0% | |
| TTTCCTTCACTAGTGCCCCG+GGG | + | chr4_4:13490960-13490979 | Msa0670740:intron | 55.0% | |
| TCATGCTAACTAGTGCCCCC+GGG | - | chr4_4:13490979-13490998 | None:intergenic | 55.0% | |
| GTCATGCTAACTAGTGCCCC+CGG | - | chr4_4:13490980-13490999 | None:intergenic | 55.0% | |
| GTGAGCAGGGTGGAGATTTG+AGG | + | chr4_4:13491572-13491591 | Msa0670740:intron | 55.0% | |
| AACCCCGGCAATGATGTGCA+CGG | - | chr4_4:13491630-13491649 | None:intergenic | 55.0% | |
| ! | CGGTGCTTTGCAGTGGACTT+TGG | + | chr4_4:13493388-13493407 | Msa0670740:three_prime_UTR | 55.0% |
| AAAGCGAAGCAGCAACGCGG+CGG | + | chr4_4:13489049-13489068 | Msa0670740:CDS | 60.0% | |
| CGGCTTCGCGTTCTCGTTTC+CGG | + | chr4_4:13489075-13489094 | Msa0670740:CDS | 60.0% | |
| TACGTAGACGGAACCCGACC+CGG | - | chr4_4:13489268-13489287 | None:intergenic | 60.0% | |
| ! | GGCGGAAATCAGGTTGCGGT+TGG | - | chr4_4:13490201-13490220 | None:intergenic | 60.0% |
| !! | AGTGGGAGGTGGCGGAAATC+AGG | - | chr4_4:13490211-13490230 | None:intergenic | 60.0% |
| ! | GGGGGTTGGCAGATACTCTG+TGG | - | chr4_4:13490411-13490430 | None:intergenic | 60.0% |
| ! | TCTTCGGTGTAGCGGCCGTA+CGG | - | chr4_4:13490461-13490480 | None:intergenic | 60.0% |
| TTCCTTCACTAGTGCCCCGG+GGG | + | chr4_4:13490961-13490980 | Msa0670740:intron | 60.0% | |
| CATGCTAACTAGTGCCCCCG+GGG | - | chr4_4:13490978-13490997 | None:intergenic | 60.0% | |
| CTCCCCGTGCACATCATTGC+CGG | + | chr4_4:13491623-13491642 | Msa0670740:CDS | 60.0% | |
| TCCCCGTGCACATCATTGCC+GGG | + | chr4_4:13491624-13491643 | Msa0670740:CDS | 60.0% | |
| ACCCCGGCAATGATGTGCAC+GGG | - | chr4_4:13491629-13491648 | None:intergenic | 60.0% | |
| CTGTTGGCCACAGCCAGCTA+AGG | - | chr4_4:13493286-13493305 | None:intergenic | 60.0% | |
| AGACGGAACCCGACCCGGAT+CGG | - | chr4_4:13489263-13489282 | None:intergenic | 65.0% | |
| !! | CGGTATAGCGGGTGGCCGTA+CGG | + | chr4_4:13490443-13490462 | Msa0670740:intron | 65.0% |
| CGGCAATGATGTGCACGGGG+AGG | - | chr4_4:13491625-13491644 | None:intergenic | 65.0% | |
| CCCCGGCAATGATGTGCACG+GGG | - | chr4_4:13491628-13491647 | None:intergenic | 65.0% | |
| CCCCGTGCACATCATTGCCG+GGG | + | chr4_4:13491625-13491644 | Msa0670740:CDS | 65.0% | |
| ! | TGCCCCCGGGGCACTAGTGA+AGG | - | chr4_4:13490966-13490985 | None:intergenic | 70.0% |
| GCGAAGCAGCAACGCGGCGG+CGG | + | chr4_4:13489052-13489071 | Msa0670740:CDS | 75.0% | |
| AAGCAGCAACGCGGCGGCGG+CGG | + | chr4_4:13489055-13489074 | Msa0670740:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 13489040 | 13494031 | 13489040 | ID=Msa0670740;Name=Msa0670740 |
| chr4_4 | mRNA | 13489040 | 13494031 | 13489040 | ID=Msa0670740-mRNA-1;Parent=Msa0670740;Name=Msa0670740-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.87|0.77|1|0.5|0.44|9|535|291 |
| chr4_4 | exon | 13489040 | 13489244 | 13489040 | ID=Msa0670740-mRNA-1:exon:4111;Parent=Msa0670740-mRNA-1 |
| chr4_4 | exon | 13489251 | 13489339 | 13489251 | ID=Msa0670740-mRNA-1:exon:4112;Parent=Msa0670740-mRNA-1 |
| chr4_4 | exon | 13491580 | 13491672 | 13491580 | ID=Msa0670740-mRNA-1:exon:4113;Parent=Msa0670740-mRNA-1 |
| chr4_4 | exon | 13491755 | 13491856 | 13491755 | ID=Msa0670740-mRNA-1:exon:4114;Parent=Msa0670740-mRNA-1 |
| chr4_4 | exon | 13492056 | 13492133 | 13492056 | ID=Msa0670740-mRNA-1:exon:4115;Parent=Msa0670740-mRNA-1 |
| chr4_4 | exon | 13492217 | 13492315 | 13492217 | ID=Msa0670740-mRNA-1:exon:4116;Parent=Msa0670740-mRNA-1 |
| chr4_4 | exon | 13492401 | 13492496 | 13492401 | ID=Msa0670740-mRNA-1:exon:4117;Parent=Msa0670740-mRNA-1 |
| chr4_4 | exon | 13493266 | 13493409 | 13493266 | ID=Msa0670740-mRNA-1:exon:4118;Parent=Msa0670740-mRNA-1 |
| chr4_4 | exon | 13493527 | 13494031 | 13493527 | ID=Msa0670740-mRNA-1:exon:4119;Parent=Msa0670740-mRNA-1 |
| chr4_4 | CDS | 13489040 | 13489244 | 13489040 | ID=Msa0670740-mRNA-1:cds;Parent=Msa0670740-mRNA-1 |
| chr4_4 | CDS | 13489251 | 13489339 | 13489251 | ID=Msa0670740-mRNA-1:cds;Parent=Msa0670740-mRNA-1 |
| chr4_4 | CDS | 13491580 | 13491672 | 13491580 | ID=Msa0670740-mRNA-1:cds;Parent=Msa0670740-mRNA-1 |
| chr4_4 | CDS | 13491755 | 13491856 | 13491755 | ID=Msa0670740-mRNA-1:cds;Parent=Msa0670740-mRNA-1 |
| chr4_4 | CDS | 13492056 | 13492133 | 13492056 | ID=Msa0670740-mRNA-1:cds;Parent=Msa0670740-mRNA-1 |
| chr4_4 | CDS | 13492217 | 13492315 | 13492217 | ID=Msa0670740-mRNA-1:cds;Parent=Msa0670740-mRNA-1 |
| chr4_4 | CDS | 13492401 | 13492496 | 13492401 | ID=Msa0670740-mRNA-1:cds;Parent=Msa0670740-mRNA-1 |
| chr4_4 | CDS | 13493266 | 13493379 | 13493266 | ID=Msa0670740-mRNA-1:cds;Parent=Msa0670740-mRNA-1 |
| chr4_4 | three_prime_UTR | 13493380 | 13493409 | 13493380 | ID=Msa0670740-mRNA-1:three_prime_utr;Parent=Msa0670740-mRNA-1 |
| chr4_4 | three_prime_UTR | 13493527 | 13494031 | 13493527 | ID=Msa0670740-mRNA-1:three_prime_utr;Parent=Msa0670740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
