AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0478730


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0478730 MtrunA17_Chr3g0141561 99.420 345 2 0 1 345 1 345 0.0 714
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0478730 AT5G42760.1 66.565 329 103 2 9 333 17 342 7.26e-164 461
Msa0478730 AT5G42760.2 65.432 324 105 2 9 328 13 333 6.69e-158 447

Find 112 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGGCCAATCACTGTAAAAT+TGG 0.235892 3_3:-83604416 Msa0478740:three_prime_UTR
ATATCGTTTGAGTTGCTTAA+AGG 0.250789 3_3:+83604041 Msa0478730:CDS
TGATCCACTTGCTGCTTTGC+TGG 0.277427 3_3:+83603268 Msa0478730:CDS
AGCTTGTTGAAGAGATTTAA+TGG 0.282957 3_3:-83604525 Msa0478740:three_prime_UTR
TGCCACTCTGGTTAAGGATT+TGG 0.289529 3_3:-83604172 Msa0478740:three_prime_UTR
ATCATGTCTGATCAAGTAAA+TGG 0.290117 3_3:+83603083 Msa0478730:exon
TTGTACTTGGTGGAAGCTTC+TGG 0.291125 3_3:+83604606 Msa0478730:CDS
ATTGTGTGTTACACAAAATA+AGG 0.292177 3_3:-83603062 Msa0478740:three_prime_UTR
CCTGTGCTTCTCTGCCATTC+GGG 0.295298 3_3:-83603427 Msa0478740:three_prime_UTR
AGAGGAGCTTAAAGAGGTTT+GGG 0.296735 3_3:-83602995 Msa0478740:three_prime_UTR
TCATCAAGAAGGCGAAAATA+AGG 0.305831 3_3:-83604865 Msa0478740:intron
TCAAAGTTCTGCGCATAATA+AGG 0.306682 3_3:+83604638 Msa0478730:CDS
GCTTAAAGAGGTTTGGGGTT+GGG 0.307755 3_3:-83602989 Msa0478740:three_prime_UTR
CCACTTGCTGCTTTGCTGGC+AGG 0.313162 3_3:+83603272 Msa0478730:CDS
TAGAGGAGCTTAAAGAGGTT+TGG 0.349102 3_3:-83602996 Msa0478740:three_prime_UTR
GTAAAATTGGAATACTGAAT+TGG 0.351492 3_3:-83604403 Msa0478740:three_prime_UTR
ATGGAAAAGCTTCAAATTGC+AGG 0.352932 3_3:+83604219 Msa0478730:CDS
GTCAGCTGCCACTCTGGTTA+AGG 0.354833 3_3:-83604178 Msa0478740:three_prime_UTR
CAGTTGCATGGCGTTGGATT+GGG 0.355782 3_3:-83604298 Msa0478740:three_prime_UTR
GCAGTTGCATGGCGTTGGAT+TGG 0.356550 3_3:-83604299 Msa0478740:three_prime_UTR
ACCTGTGCTTCTCTGCCATT+CGG 0.360737 3_3:-83603428 Msa0478740:three_prime_UTR
CAGCATGGTGTTCCGTCATC+TGG 0.362251 3_3:-83604579 Msa0478740:three_prime_UTR
CACTTGCTGCTTTGCTGGCA+GGG 0.366484 3_3:+83603273 Msa0478730:CDS
AACAATGCTCGTGAAACTTC+TGG 0.370805 3_3:+83603344 Msa0478730:CDS
GGAGACCCAGATGCCCATTT+CGG 0.372976 3_3:+83604489 Msa0478730:CDS
CATGTTCTATTCTACGAATC+AGG 0.382111 3_3:-83604676 Msa0478740:intron
ACACAAAATAAGGGATTAAG+AGG 0.386028 3_3:-83603052 Msa0478740:three_prime_UTR
AAGAGGCCGAAATGGGCATC+TGG 0.390257 3_3:-83604495 Msa0478740:three_prime_UTR
GTTGCGTGGACCTGTCGAAC+AGG 0.390970 3_3:-83603164 Msa0478740:three_prime_UTR
TCTGGTTAAGGATTTGGCTT+TGG 0.395848 3_3:-83604166 Msa0478740:three_prime_UTR
AATTATATGATGAAGAATAA+TGG 0.398846 3_3:+83604904 Msa0478730:three_prime_UTR
ACATGTGTGAAGCCAATAGA+TGG 0.399797 3_3:-83604450 Msa0478740:three_prime_UTR
TTTGGCAAGCTGACCTTTGA+AGG 0.402317 3_3:-83603208 Msa0478740:three_prime_UTR
GATCATTCAAGAGGCCGAAA+TGG 0.408961 3_3:-83604503 Msa0478740:three_prime_UTR
CTGTACAATTGCTACACTAT+TGG 0.408983 3_3:+83604754 Msa0478730:three_prime_UTR
CATGTAAAACTTTCACAGAT+TGG 0.409955 3_3:+83604468 Msa0478730:CDS
TGCATGTTATTTATATATAG+AGG 0.416921 3_3:-83603013 Msa0478740:three_prime_UTR
AGCTTAAAGAGGTTTGGGGT+TGG 0.418278 3_3:-83602990 Msa0478740:three_prime_UTR
TTGTGTGTTACACAAAATAA+GGG 0.419061 3_3:-83603061 Msa0478740:three_prime_UTR
CACTATTCTGCAAGCAGCTA+AGG 0.423193 3_3:+83604113 Msa0478730:CDS
CAGGTTGTTCTCCTAGGTGC+AGG 0.437261 3_3:+83603446 Msa0478730:CDS
ACTTGCTGCTTTGCTGGCAG+GGG 0.441240 3_3:+83603274 Msa0478730:CDS
TCTTATGTCAGCTGCCACTC+TGG 0.442727 3_3:-83604184 Msa0478740:three_prime_UTR
CTGACATAAGAGAAAATGAT+TGG 0.443102 3_3:+83604196 Msa0478730:CDS
GGTTTAGCTCTGGCCATGCT+TGG 0.443811 3_3:-83603118 Msa0478740:three_prime_UTR
AAAGGACAGCGATGTCTTTG+AGG 0.446558 3_3:+83604059 Msa0478730:CDS
GGTTGACTTTGCAGAAGTCT+TGG 0.451465 3_3:+83604080 Msa0478730:CDS
GGGTCAGTATGTAACAAGTC+TGG 0.458829 3_3:-83603143 Msa0478740:three_prime_UTR
TAGCCCTTCCTGCAGCCGTT+TGG 0.463381 3_3:-83603226 Msa0478740:three_prime_UTR
TCTCAGCAGTTGCATGGCGT+TGG 0.466299 3_3:-83604304 Msa0478740:three_prime_UTR
TCCTTGCAGTTAGAACGCTT+TGG 0.467503 3_3:+83603372 Msa0478730:CDS
CGCAACAATTGAAAAGGAAT+GGG 0.471274 3_3:+83603181 Msa0478730:CDS
ACCATGCTGTCGCTTGTACT+TGG 0.472145 3_3:+83604593 Msa0478730:CDS
ATCATTCAAGAGGCCGAAAT+GGG 0.474174 3_3:-83604502 Msa0478740:three_prime_UTR
ATAATAAGGAGTCGGTCATT+CGG 0.478792 3_3:+83604652 Msa0478730:CDS
CTTGCCAAACGGCTGCAGGA+AGG 0.480463 3_3:+83603222 Msa0478730:CDS
TTGCCAAACGGCTGCAGGAA+GGG 0.481862 3_3:+83603223 Msa0478730:CDS
TACCACAGAAGAGCACGGTC+TGG 0.483659 3_3:+83604247 Msa0478730:CDS
AGCACGGTCTGGATTCTAGA+AGG 0.484304 3_3:+83604258 Msa0478730:CDS
GAAGCACAGGTTGTTCTCCT+AGG 0.487419 3_3:+83603440 Msa0478730:CDS
TCAGCTTGCCAAACGGCTGC+AGG 0.487788 3_3:+83603218 Msa0478730:CDS
TGGTGTTCCGTCATCTGGAT+TGG 0.488532 3_3:-83604574 Msa0478740:three_prime_UTR
ATAGATGGTAAAAGTTGGTC+TGG 0.488683 3_3:-83604435 Msa0478740:three_prime_UTR
ACGCAACAATTGAAAAGGAA+TGG 0.493384 3_3:+83603180 Msa0478730:CDS
TGGATTGGGCGAGGTAGTAT+AGG 0.496759 3_3:-83604284 Msa0478740:three_prime_UTR
ATATATAGAGGAGCTTAAAG+AGG 0.501537 3_3:-83603001 Msa0478740:three_prime_UTR
ACATACTGACCCTGTTCGAC+AGG 0.504111 3_3:+83603154 Msa0478730:CDS
TTATGCGCAGAACTTTGATC+GGG 0.506535 3_3:-83604633 Msa0478740:intron
GCAAAGCAGCAAGTGGATCA+TGG 0.508155 3_3:-83603265 Msa0478740:three_prime_UTR
CCCGAATGGCAGAGAAGCAC+AGG 0.509784 3_3:+83603427 Msa0478730:CDS
CATAAGAGAAAATGATTGGA+TGG 0.512586 3_3:+83604200 Msa0478730:CDS
AAATAAGGTTCGAATAACTT+AGG 0.515854 3_3:-83604850 Msa0478740:intron
TGACTTTGCAGAAGTCTTGG+AGG 0.519811 3_3:+83604083 Msa0478730:CDS
GGTCCACGCAACAATTGAAA+AGG 0.522870 3_3:+83603175 Msa0478730:CDS
ATTATGCGCAGAACTTTGAT+CGG 0.524410 3_3:-83604634 Msa0478740:intron
GCTTTGGTTTGATTCTAGAC+TGG 0.526315 3_3:+83603388 Msa0478730:CDS
ATGCTGTCGCTTGTACTTGG+TGG 0.529839 3_3:+83604596 Msa0478730:CDS
GGATTAAGAGGTTTGTGAAG+AGG 0.530128 3_3:-83603040 Msa0478740:three_prime_UTR
ACAAGCTCCGCAACTTGCCT+AGG 0.536607 3_3:+83604541 Msa0478730:CDS
GTTCGAATAACTTAGGTCAA+AGG 0.544773 3_3:-83604843 Msa0478740:intron
CGGCTGCAGGAAGGGCTATG+TGG 0.545627 3_3:+83603231 Msa0478730:CDS
CAATAGTGTAGCAATTGTAC+AGG 0.548574 3_3:-83604753 Msa0478740:intron
GCATGGCGTTGGATTGGGCG+AGG 0.548828 3_3:-83604293 Msa0478740:three_prime_UTR
ACTTATTCATGAAGTCTGCT+AGG 0.551456 3_3:-83604365 Msa0478740:three_prime_UTR
AAGTCTGGAAGGTTTAGCTC+TGG 0.555279 3_3:-83603128 Msa0478740:three_prime_UTR
AGAGGCCGAAATGGGCATCT+GGG 0.562365 3_3:-83604494 Msa0478740:three_prime_UTR
GAGGAGCTTAAAGAGGTTTG+GGG 0.562575 3_3:-83602994 Msa0478740:three_prime_UTR
ATTGTACAGGTGACAACACA+TGG 0.564480 3_3:-83604740 Msa0478740:intron
AGGAATGGGATTTCCTTCAA+AGG 0.566300 3_3:+83603195 Msa0478730:CDS
AGCCAATAGATGGTAAAAGT+TGG 0.570838 3_3:-83604440 Msa0478740:three_prime_UTR
CCTGCCAGCAAAGCAGCAAG+TGG 0.579542 3_3:-83603272 Msa0478740:three_prime_UTR
ACCAAAGCGTTCTAACTGCA+AGG 0.581770 3_3:-83603373 Msa0478740:three_prime_UTR
ATCCAGACCGTGCTCTTCTG+TGG 0.590430 3_3:-83604249 Msa0478740:three_prime_UTR
GCTTGCAAGACAACCAAGCA+TGG 0.591039 3_3:+83603105 Msa0478730:CDS
TAAAATTCTCAGCAGTTGCA+TGG 0.596944 3_3:-83604310 Msa0478740:three_prime_UTR
GGATTGGTTTGTAATGACCT+AGG 0.599942 3_3:-83604558 Msa0478740:three_prime_UTR
CTGATTCGTAGAATAGAACA+TGG 0.603568 3_3:+83604677 Msa0478730:exon
TCAAAGGTCAGCTTGCCAAA+CGG 0.612550 3_3:+83603211 Msa0478730:CDS
ACCAAGTACAAGCGACAGCA+TGG 0.615849 3_3:-83604594 Msa0478740:three_prime_UTR
GTAATGACCTAGGCAAGTTG+CGG 0.618313 3_3:-83604548 Msa0478740:three_prime_UTR
GATTTAATGGATCATTCAAG+AGG 0.619216 3_3:-83604512 Msa0478740:three_prime_UTR
CAGTATGTAACAAGTCTGGA+AGG 0.620530 3_3:-83603139 Msa0478740:three_prime_UTR
GATGTTCTCAGTTCCCCGAA+TGG 0.621167 3_3:+83603413 Msa0478730:CDS
CTGTGCTTCTCTGCCATTCG+GGG 0.625733 3_3:-83603426 Msa0478740:three_prime_UTR
TTCTGCGCATAATAAGGAGT+CGG 0.630759 3_3:+83604644 Msa0478730:CDS
CAATTGTGTCTTAACTCACA+CGG 0.633180 3_3:+83604338 Msa0478730:CDS
TTACAAACCAATCCAGATGA+CGG 0.634102 3_3:+83604567 Msa0478730:CDS
TTGCGTGGACCTGTCGAACA+GGG 0.640836 3_3:-83603163 Msa0478740:three_prime_UTR
TTTCTTACCACAGAAGAGCA+CGG 0.661986 3_3:+83604242 Msa0478730:CDS
AGCCAAATCCTTAACCAGAG+TGG 0.662283 3_3:+83604170 Msa0478730:CDS
GTGTCTACAAACCTGCACCT+AGG 0.662807 3_3:-83603457 Msa0478740:intron
GAATACTGAATTGGATAGCG+TGG 0.687583 3_3:-83604394 Msa0478740:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAATTAATTCTTATTGT+TGG + chr3_3:83604716-83604735 Msa0478730:three_prime_UTR 10.0%
!! AATTATATGATGAAGAATAA+TGG + chr3_3:83604904-83604923 Msa0478730:three_prime_UTR 15.0%
!!! TGCATGTTATTTATATATAG+AGG - chr3_3:83603016-83603035 Msa0478740:three_prime_UTR 20.0%
!!! GTCTTAAAAGGTTTTAAATA+CGG - chr3_3:83603707-83603726 Msa0478740:intron 20.0%
!! AAAAGATATCTTGTCTTAAA+AGG - chr3_3:83603719-83603738 Msa0478740:intron 20.0%
!! TATTCTATTCCTAGTTAATT+TGG + chr3_3:83603753-83603772 Msa0478730:intron 20.0%
!! ATTCTATTCCTAGTTAATTT+GGG + chr3_3:83603754-83603773 Msa0478730:intron 20.0%
!! GAAAAATTATTTCATCAAGA+AGG - chr3_3:83604879-83604898 Msa0478740:intron 20.0%
!!! GAAGAAAGTTACATTTTTTA+GGG - chr3_3:83604987-83605006 Msa0478740:intron 20.0%
!!! TGAAGAAAGTTACATTTTTT+AGG - chr3_3:83604988-83605007 Msa0478740:intron 20.0%
! TTGTGTGTTACACAAAATAA+GGG - chr3_3:83603064-83603083 Msa0478740:three_prime_UTR 25.0%
! ATTGTGTGTTACACAAAATA+AGG - chr3_3:83603065-83603084 Msa0478740:three_prime_UTR 25.0%
!! TAATTTGGGATGCAAATATT+TGG + chr3_3:83603768-83603787 Msa0478730:intron 25.0%
! GTAAAATTGGAATACTGAAT+TGG - chr3_3:83604406-83604425 Msa0478740:three_prime_UTR 25.0%
!! TATTCCAATTTTACAGTGAT+TGG + chr3_3:83604412-83604431 Msa0478730:CDS 25.0%
!!! ATAGTCTTTTTCAATACAAG+AGG + chr3_3:83604800-83604819 Msa0478730:three_prime_UTR 25.0%
!!! TAGTCTTTTTCAATACAAGA+GGG + chr3_3:83604801-83604820 Msa0478730:three_prime_UTR 25.0%
! AAATAAGGTTCGAATAACTT+AGG - chr3_3:83604853-83604872 Msa0478740:intron 25.0%
ATATATAGAGGAGCTTAAAG+AGG - chr3_3:83603004-83603023 Msa0478740:three_prime_UTR 30.0%
ACACAAAATAAGGGATTAAG+AGG - chr3_3:83603055-83603074 Msa0478740:three_prime_UTR 30.0%
ATCATGTCTGATCAAGTAAA+TGG + chr3_3:83603083-83603102 Msa0478730:exon 30.0%
! CTTTTCTCATCTTTTCATGA+AGG - chr3_3:83603316-83603335 Msa0478740:three_prime_UTR 30.0%
! ACCAGAAAATTGAAGACTTT+TGG + chr3_3:83603637-83603656 Msa0478730:intron 30.0%
! CCAGAAAATTGAAGACTTTT+GGG + chr3_3:83603638-83603657 Msa0478730:intron 30.0%
! CAGAAAATTGAAGACTTTTG+GGG + chr3_3:83603639-83603658 Msa0478730:intron 30.0%
! AGAAAATTGAAGACTTTTGG+GGG + chr3_3:83603640-83603659 Msa0478730:intron 30.0%
!! AGTTTCTTGTGTGTTTTTGA+AGG - chr3_3:83603675-83603694 Msa0478740:intron 30.0%
ATTTGCATCCCAAATTAACT+AGG - chr3_3:83603765-83603784 Msa0478740:intron 30.0%
GATGCAAATATTTGGCAAAA+TGG + chr3_3:83603776-83603795 Msa0478730:intron 30.0%
ACAATTTAGTCGTGTCTAAA+AGG - chr3_3:83603802-83603821 Msa0478740:intron 30.0%
TAATGATTGTTTGGGAACTT+AGG - chr3_3:83603849-83603868 Msa0478740:intron 30.0%
! ATCATTAGACAGGACAATTT+TGG + chr3_3:83603862-83603881 Msa0478730:intron 30.0%
ATTCTTGCAAAATTTGATGC+AGG + chr3_3:83604003-83604022 Msa0478730:intron 30.0%
!! ATATCGTTTGAGTTGCTTAA+AGG + chr3_3:83604041-83604060 Msa0478730:CDS 30.0%
CTGACATAAGAGAAAATGAT+TGG + chr3_3:83604196-83604215 Msa0478730:CDS 30.0%
CATAAGAGAAAATGATTGGA+TGG + chr3_3:83604200-83604219 Msa0478730:CDS 30.0%
CATGTAAAACTTTCACAGAT+TGG + chr3_3:83604468-83604487 Msa0478730:CDS 30.0%
! GATTTAATGGATCATTCAAG+AGG - chr3_3:83604515-83604534 Msa0478740:three_prime_UTR 30.0%
!! AGCTTGTTGAAGAGATTTAA+TGG - chr3_3:83604528-83604547 Msa0478740:three_prime_UTR 30.0%
TATTGGCAAAAAATGCTAGA+CGG + chr3_3:83604771-83604790 Msa0478730:three_prime_UTR 30.0%
!!! AGTCTTTTTCAATACAAGAG+GGG + chr3_3:83604802-83604821 Msa0478730:three_prime_UTR 30.0%
!!! AAAGGCTATTTCTAGCTTTT+TGG - chr3_3:83604828-83604847 Msa0478740:intron 30.0%
! ATTCCTTTTCAATTGTTGCG+TGG - chr3_3:83603181-83603200 Msa0478740:three_prime_UTR 35.0%
ACGCAACAATTGAAAAGGAA+TGG + chr3_3:83603180-83603199 Msa0478730:CDS 35.0%
CGCAACAATTGAAAAGGAAT+GGG + chr3_3:83603181-83603200 Msa0478730:CDS 35.0%
ATAGTTATCAGAAGCTAACG+CGG + chr3_3:83603583-83603602 Msa0478730:intron 35.0%
! CCCAAAAGTCTTCAATTTTC+TGG - chr3_3:83603641-83603660 Msa0478740:intron 35.0%
! TGTAACAGCACATTTTAGAC+AGG + chr3_3:83603819-83603838 Msa0478730:intron 35.0%
TTCCCAAACAATCATTAGAC+AGG + chr3_3:83603852-83603871 Msa0478730:intron 35.0%
GTCCTGTCTAATGATTGTTT+GGG - chr3_3:83603857-83603876 Msa0478740:intron 35.0%
TGTCCTGTCTAATGATTGTT+TGG - chr3_3:83603858-83603877 Msa0478740:intron 35.0%
!!! AGGACAATTTTGGAACCTTT+TGG + chr3_3:83603872-83603891 Msa0478730:intron 35.0%
TGCAAAATTTGATGCAGGAA+TGG + chr3_3:83604008-83604027 Msa0478730:intron 35.0%
ATGGAAAAGCTTCAAATTGC+AGG + chr3_3:83604219-83604238 Msa0478730:CDS 35.0%
TAAAATTCTCAGCAGTTGCA+TGG - chr3_3:83604313-83604332 Msa0478740:three_prime_UTR 35.0%
CAATTGTGTCTTAACTCACA+CGG + chr3_3:83604338-83604357 Msa0478730:CDS 35.0%
ACTTATTCATGAAGTCTGCT+AGG - chr3_3:83604368-83604387 Msa0478740:three_prime_UTR 35.0%
! ATAGATGGTAAAAGTTGGTC+TGG - chr3_3:83604438-83604457 Msa0478740:three_prime_UTR 35.0%
! GACCAACTTTTACCATCTAT+TGG + chr3_3:83604438-83604457 Msa0478730:CDS 35.0%
AGCCAATAGATGGTAAAAGT+TGG - chr3_3:83604443-83604462 Msa0478740:three_prime_UTR 35.0%
TTACAAACCAATCCAGATGA+CGG + chr3_3:83604567-83604586 Msa0478730:CDS 35.0%
ATTATGCGCAGAACTTTGAT+CGG - chr3_3:83604637-83604656 Msa0478740:intron 35.0%
TCAAAGTTCTGCGCATAATA+AGG + chr3_3:83604638-83604657 Msa0478730:CDS 35.0%
ATAATAAGGAGTCGGTCATT+CGG + chr3_3:83604652-83604671 Msa0478730:CDS 35.0%
CATGTTCTATTCTACGAATC+AGG - chr3_3:83604679-83604698 Msa0478740:intron 35.0%
! CTGATTCGTAGAATAGAACA+TGG + chr3_3:83604677-83604696 Msa0478730:exon 35.0%
CAATAGTGTAGCAATTGTAC+AGG - chr3_3:83604756-83604775 Msa0478740:intron 35.0%
CTGTACAATTGCTACACTAT+TGG + chr3_3:83604754-83604773 Msa0478730:three_prime_UTR 35.0%
ATTGGCAAAAAATGCTAGAC+GGG + chr3_3:83604772-83604791 Msa0478730:three_prime_UTR 35.0%
GTTCGAATAACTTAGGTCAA+AGG - chr3_3:83604846-83604865 Msa0478740:intron 35.0%
TCATCAAGAAGGCGAAAATA+AGG - chr3_3:83604868-83604887 Msa0478740:intron 35.0%
!! ACGTGTTTTTGAACTGGTTT+GGG - chr3_3:83605042-83605061 Msa0478740:intron 35.0%
AGAGGAGCTTAAAGAGGTTT+GGG - chr3_3:83602998-83603017 Msa0478740:three_prime_UTR 40.0%
TAGAGGAGCTTAAAGAGGTT+TGG - chr3_3:83602999-83603018 Msa0478740:three_prime_UTR 40.0%
GGATTAAGAGGTTTGTGAAG+AGG - chr3_3:83603043-83603062 Msa0478740:three_prime_UTR 40.0%
CAGTATGTAACAAGTCTGGA+AGG - chr3_3:83603142-83603161 Msa0478740:three_prime_UTR 40.0%
AGGAATGGGATTTCCTTCAA+AGG + chr3_3:83603195-83603214 Msa0478730:CDS 40.0%
AACAATGCTCGTGAAACTTC+TGG + chr3_3:83603344-83603363 Msa0478730:CDS 40.0%
!! GCTTTGGTTTGATTCTAGAC+TGG + chr3_3:83603388-83603407 Msa0478730:CDS 40.0%
!!! TCTGGTCTACTGCTGTTTTT+GGG - chr3_3:83603623-83603642 Msa0478740:intron 40.0%
!!! TTCTGGTCTACTGCTGTTTT+TGG - chr3_3:83603624-83603643 Msa0478740:intron 40.0%
! CAGTGATTATGATTAGCTGC+TGG - chr3_3:83603914-83603933 Msa0478740:intron 40.0%
! TCTGGTTAAGGATTTGGCTT+TGG - chr3_3:83604169-83604188 Msa0478740:three_prime_UTR 40.0%
TTTCTTACCACAGAAGAGCA+CGG + chr3_3:83604242-83604261 Msa0478730:CDS 40.0%
GAATACTGAATTGGATAGCG+TGG - chr3_3:83604397-83604416 Msa0478740:three_prime_UTR 40.0%
CTGGCCAATCACTGTAAAAT+TGG - chr3_3:83604419-83604438 Msa0478740:three_prime_UTR 40.0%
ACATGTGTGAAGCCAATAGA+TGG - chr3_3:83604453-83604472 Msa0478740:three_prime_UTR 40.0%
ATCATTCAAGAGGCCGAAAT+GGG - chr3_3:83604505-83604524 Msa0478740:three_prime_UTR 40.0%
!! GGATTGGTTTGTAATGACCT+AGG - chr3_3:83604561-83604580 Msa0478740:three_prime_UTR 40.0%
TTATGCGCAGAACTTTGATC+GGG - chr3_3:83604636-83604655 Msa0478740:intron 40.0%
TTCTGCGCATAATAAGGAGT+CGG + chr3_3:83604644-83604663 Msa0478730:CDS 40.0%
ATTGTACAGGTGACAACACA+TGG - chr3_3:83604743-83604762 Msa0478740:intron 40.0%
TTGGCAAAAAATGCTAGACG+GGG + chr3_3:83604773-83604792 Msa0478730:three_prime_UTR 40.0%
!!! TGTTTTTGAACTGGTTTGGG+TGG - chr3_3:83605039-83605058 Msa0478740:intron 40.0%
!! GACGTGTTTTTGAACTGGTT+TGG - chr3_3:83605043-83605062 Msa0478740:intron 40.0%
!! GAGTAGACGTGTTTTTGAAC+TGG - chr3_3:83605048-83605067 Msa0478740:intron 40.0%
! GCTTAAAGAGGTTTGGGGTT+GGG - chr3_3:83602992-83603011 Msa0478740:three_prime_UTR 45.0%
! AGCTTAAAGAGGTTTGGGGT+TGG - chr3_3:83602993-83603012 Msa0478740:three_prime_UTR 45.0%
GAGGAGCTTAAAGAGGTTTG+GGG - chr3_3:83602997-83603016 Msa0478740:three_prime_UTR 45.0%
! AAGTCTGGAAGGTTTAGCTC+TGG - chr3_3:83603131-83603150 Msa0478740:three_prime_UTR 45.0%
GGGTCAGTATGTAACAAGTC+TGG - chr3_3:83603146-83603165 Msa0478740:three_prime_UTR 45.0%
GGTCCACGCAACAATTGAAA+AGG + chr3_3:83603175-83603194 Msa0478730:CDS 45.0%
TTTGGCAAGCTGACCTTTGA+AGG - chr3_3:83603211-83603230 Msa0478740:three_prime_UTR 45.0%
TCAAAGGTCAGCTTGCCAAA+CGG + chr3_3:83603211-83603230 Msa0478730:CDS 45.0%
TCCTTGCAGTTAGAACGCTT+TGG + chr3_3:83603372-83603391 Msa0478730:CDS 45.0%
! ACCAAAGCGTTCTAACTGCA+AGG - chr3_3:83603376-83603395 Msa0478740:three_prime_UTR 45.0%
TTATCAGAAGCTAACGCGGA+TGG + chr3_3:83603587-83603606 Msa0478730:intron 45.0%
! CAGACTGGCTGTAATCCAAA+AGG - chr3_3:83603890-83603909 Msa0478740:intron 45.0%
AAAGGACAGCGATGTCTTTG+AGG + chr3_3:83604059-83604078 Msa0478730:CDS 45.0%
! GGTTGACTTTGCAGAAGTCT+TGG + chr3_3:83604080-83604099 Msa0478730:CDS 45.0%
TGACTTTGCAGAAGTCTTGG+AGG + chr3_3:83604083-83604102 Msa0478730:CDS 45.0%
CACTATTCTGCAAGCAGCTA+AGG + chr3_3:83604113-83604132 Msa0478730:CDS 45.0%
AGCCAAATCCTTAACCAGAG+TGG + chr3_3:83604170-83604189 Msa0478730:CDS 45.0%
TGCCACTCTGGTTAAGGATT+TGG - chr3_3:83604175-83604194 Msa0478740:three_prime_UTR 45.0%
GATCATTCAAGAGGCCGAAA+TGG - chr3_3:83604506-83604525 Msa0478740:three_prime_UTR 45.0%
GTAATGACCTAGGCAAGTTG+CGG - chr3_3:83604551-83604570 Msa0478740:three_prime_UTR 45.0%
! TTGTACTTGGTGGAAGCTTC+TGG + chr3_3:83604606-83604625 Msa0478730:CDS 45.0%
GCTTGCAAGACAACCAAGCA+TGG + chr3_3:83603105-83603124 Msa0478730:CDS 50.0%
ACATACTGACCCTGTTCGAC+AGG + chr3_3:83603154-83603173 Msa0478730:CDS 50.0%
GCAAAGCAGCAAGTGGATCA+TGG - chr3_3:83603268-83603287 Msa0478740:three_prime_UTR 50.0%
!! TGATCCACTTGCTGCTTTGC+TGG + chr3_3:83603268-83603287 Msa0478730:CDS 50.0%
GATGTTCTCAGTTCCCCGAA+TGG + chr3_3:83603413-83603432 Msa0478730:CDS 50.0%
ACCTGTGCTTCTCTGCCATT+CGG - chr3_3:83603431-83603450 Msa0478740:three_prime_UTR 50.0%
GAAGCACAGGTTGTTCTCCT+AGG + chr3_3:83603440-83603459 Msa0478730:CDS 50.0%
GTGTCTACAAACCTGCACCT+AGG - chr3_3:83603460-83603479 Msa0478740:intron 50.0%
! TGATTAGCTGCTGGTCAGAC+TGG - chr3_3:83603905-83603924 Msa0478740:intron 50.0%
TCTTATGTCAGCTGCCACTC+TGG - chr3_3:83604187-83604206 Msa0478740:three_prime_UTR 50.0%
AGCACGGTCTGGATTCTAGA+AGG + chr3_3:83604258-83604277 Msa0478730:CDS 50.0%
! TGGATTGGGCGAGGTAGTAT+AGG - chr3_3:83604287-83604306 Msa0478740:three_prime_UTR 50.0%
! CAGTTGCATGGCGTTGGATT+GGG - chr3_3:83604301-83604320 Msa0478740:three_prime_UTR 50.0%
TGGTGTTCCGTCATCTGGAT+TGG - chr3_3:83604577-83604596 Msa0478740:three_prime_UTR 50.0%
! ACCATGCTGTCGCTTGTACT+TGG + chr3_3:83604593-83604612 Msa0478730:CDS 50.0%
ACCAAGTACAAGCGACAGCA+TGG - chr3_3:83604597-83604616 Msa0478740:three_prime_UTR 50.0%
! ATGCTGTCGCTTGTACTTGG+TGG + chr3_3:83604596-83604615 Msa0478730:CDS 50.0%
!! GGTTTAGCTCTGGCCATGCT+TGG - chr3_3:83603121-83603140 Msa0478740:three_prime_UTR 55.0%
TTGCGTGGACCTGTCGAACA+GGG - chr3_3:83603166-83603185 Msa0478740:three_prime_UTR 55.0%
TTGCCAAACGGCTGCAGGAA+GGG + chr3_3:83603223-83603242 Msa0478730:CDS 55.0%
!! CACTTGCTGCTTTGCTGGCA+GGG + chr3_3:83603273-83603292 Msa0478730:CDS 55.0%
!! ACTTGCTGCTTTGCTGGCAG+GGG + chr3_3:83603274-83603293 Msa0478730:CDS 55.0%
CTGTGCTTCTCTGCCATTCG+GGG - chr3_3:83603429-83603448 Msa0478740:three_prime_UTR 55.0%
CCTGTGCTTCTCTGCCATTC+GGG - chr3_3:83603430-83603449 Msa0478740:three_prime_UTR 55.0%
CAGGTTGTTCTCCTAGGTGC+AGG + chr3_3:83603446-83603465 Msa0478730:CDS 55.0%
GTCAGCTGCCACTCTGGTTA+AGG - chr3_3:83604181-83604200 Msa0478740:three_prime_UTR 55.0%
! TACCACAGAAGAGCACGGTC+TGG + chr3_3:83604247-83604266 Msa0478730:CDS 55.0%
ATCCAGACCGTGCTCTTCTG+TGG - chr3_3:83604252-83604271 Msa0478740:three_prime_UTR 55.0%
! GCAGTTGCATGGCGTTGGAT+TGG - chr3_3:83604302-83604321 Msa0478740:three_prime_UTR 55.0%
TCTCAGCAGTTGCATGGCGT+TGG - chr3_3:83604307-83604326 Msa0478740:three_prime_UTR 55.0%
GGAGACCCAGATGCCCATTT+CGG + chr3_3:83604489-83604508 Msa0478730:CDS 55.0%
AGAGGCCGAAATGGGCATCT+GGG - chr3_3:83604497-83604516 Msa0478740:three_prime_UTR 55.0%
AAGAGGCCGAAATGGGCATC+TGG - chr3_3:83604498-83604517 Msa0478740:three_prime_UTR 55.0%
ACAAGCTCCGCAACTTGCCT+AGG + chr3_3:83604541-83604560 Msa0478730:CDS 55.0%
CAGCATGGTGTTCCGTCATC+TGG - chr3_3:83604582-83604601 Msa0478740:three_prime_UTR 55.0%
GTTGCGTGGACCTGTCGAAC+AGG - chr3_3:83603167-83603186 Msa0478740:three_prime_UTR 60.0%
TCAGCTTGCCAAACGGCTGC+AGG + chr3_3:83603218-83603237 Msa0478730:CDS 60.0%
CTTGCCAAACGGCTGCAGGA+AGG + chr3_3:83603222-83603241 Msa0478730:CDS 60.0%
TAGCCCTTCCTGCAGCCGTT+TGG - chr3_3:83603229-83603248 Msa0478740:three_prime_UTR 60.0%
CCTGCCAGCAAAGCAGCAAG+TGG - chr3_3:83603275-83603294 Msa0478740:three_prime_UTR 60.0%
!! CCACTTGCTGCTTTGCTGGC+AGG + chr3_3:83603272-83603291 Msa0478730:CDS 60.0%
! CCCGAATGGCAGAGAAGCAC+AGG + chr3_3:83603427-83603446 Msa0478730:CDS 60.0%
CGGCTGCAGGAAGGGCTATG+TGG + chr3_3:83603231-83603250 Msa0478730:CDS 65.0%
! GCATGGCGTTGGATTGGGCG+AGG - chr3_3:83604296-83604315 Msa0478740:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 83602989 83605081 83602989 ID=Msa0478730;Name=Msa0478730
chr3_3 mRNA 83602989 83605081 83602989 ID=Msa0478730-mRNA-1;Parent=Msa0478730;Name=Msa0478730-mRNA-1;_AED=0.00;_eAED=0.00;_QI=97|1|1|1|1|1|2|401|345
chr3_3 exon 83602989 83603467 83602989 ID=Msa0478730-mRNA-1:exon:23527;Parent=Msa0478730-mRNA-1
chr3_3 exon 83604025 83605081 83604025 ID=Msa0478730-mRNA-1:exon:23528;Parent=Msa0478730-mRNA-1
chr3_3 five_prime_UTR 83602989 83603085 83602989 ID=Msa0478730-mRNA-1:five_prime_utr;Parent=Msa0478730-mRNA-1
chr3_3 CDS 83603086 83603467 83603086 ID=Msa0478730-mRNA-1:cds;Parent=Msa0478730-mRNA-1
chr3_3 CDS 83604025 83604680 83604025 ID=Msa0478730-mRNA-1:cds;Parent=Msa0478730-mRNA-1
chr3_3 three_prime_UTR 83604681 83605081 83604681 ID=Msa0478730-mRNA-1:three_prime_utr;Parent=Msa0478730-mRNA-1
Gene Sequence

>Msa0478730

ATGTCTGATCAAGTAAATGGCTTGCAAGACAACCAAGCATGGCCAGAGCTAAACCTTCCAGACTTGTTACATACTGACCCTGTTCGACAGGTCCACGCAACAATTGAAAAGGAATGGGATTTCCTTCAAAGGTCAGCTTGCCAAACGGCTGCAGGAAGGGCTATGTGGAAGCATGTGATCCATGATCCACTTGCTGCTTTGCTGGCAGGGGAGACTTATTTGAGAAACCTTCATGAAAAGATGAGAAAAGACTATCTCAACAATGCTCGTGAAACTTCTGGAGTGATCCTTGCAGTTAGAACGCTTTGGTTTGATTCTAGACTGGAAGATGTTCTCAGTTCCCCGAATGGCAGAGAAGCACAGGTTGTTCTCCTAGGTGCAGGAATGGATACAAGAGCATATCGTTTGAGTTGCTTAAAGGACAGCGATGTCTTTGAGGTTGACTTTGCAGAAGTCTTGGAGGTAAAAAGCACTATTCTGCAAGCAGCTAAGGAATCAACATACGAGTCACAACATATTATGTCCAAAGCCAAATCCTTAACCAGAGTGGCAGCTGACATAAGAGAAAATGATTGGATGGAAAAGCTTCAAATTGCAGGTTTCTTACCACAGAAGAGCACGGTCTGGATTCTAGAAGGTATCCTATACTACCTCGCCCAATCCAACGCCATGCAACTGCTGAGAATTTTAGCTAACAATTGTGTCTTAACTCACACGGTCATCCTAGCAGACTTCATGAATAAGTCATCAACCACGCTATCCAATTCAGTATTCCAATTTTACAGTGATTGGCCAGACCAACTTTTACCATCTATTGGCTTCACACATGTAAAACTTTCACAGATTGGAGACCCAGATGCCCATTTCGGCCTCTTGAATGATCCATTAAATCTCTTCAACAAGCTCCGCAACTTGCCTAGGTCATTACAAACCAATCCAGATGACGGAACACCATGCTGTCGCTTGTACTTGGTGGAAGCTTCTGGTTCACCCGATCAAAGTTCTGCGCATAATAAGGAGTCGGTCATTCGGTCCTGA

Protein sequence

>Msa0478730

MSDQVNGLQDNQAWPELNLPDLLHTDPVRQVHATIEKEWDFLQRSACQTAAGRAMWKHVIHDPLAALLAGETYLRNLHEKMRKDYLNNARETSGVILAVRTLWFDSRLEDVLSSPNGREAQVVLLGAGMDTRAYRLSCLKDSDVFEVDFAEVLEVKSTILQAAKESTYESQHIMSKAKSLTRVAADIRENDWMEKLQIAGFLPQKSTVWILEGILYYLAQSNAMQLLRILANNCVLTHTVILADFMNKSSTTLSNSVFQFYSDWPDQLLPSIGFTHVKLSQIGDPDAHFGLLNDPLNLFNKLRNLPRSLQTNPDDGTPCCRLYLVEASGSPDQSSAHNKESVIRS*