AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0408390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0408390 MtrunA17_Chr3g0099051 97.531 243 6 0 1 243 1 243 8.24e-179 490
Msa0408390 MtrunA17_Chr5g0444231 78.298 235 47 2 1 231 1 235 1.42e-134 379
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0408390 AT1G28490.1 67.755 245 77 2 1 243 1 245 2.86e-116 332
Msa0408390 AT1G28490.3 70.000 190 56 1 55 243 11 200 1.06e-89 263
Msa0408390 AT1G28490.2 68.159 201 58 2 44 243 11 206 2.46e-89 263

Find 71 sgRNAs with CRISPR-Local

Find 235 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTACGAAGGAGGTTCTTTC+TGG 0.134337 3_2:-48189887 Msa0408390:CDS
CCATGGAGAATTTATTTATA+TGG 0.256561 3_2:-48191071 None:intergenic
TCTAGTACAACAAGCATTAA+TGG 0.260115 3_2:-48188634 Msa0408390:CDS
TTTGATTCATAAATGATGTT+AGG 0.274471 3_2:-48187154 Msa0408390:three_prime_UTR
GTTACTGTGCTGTTTGTATA+TGG 0.300817 3_2:-48187351 Msa0408390:three_prime_UTR
ACTTACAGATTCTTGAATTT+CGG 0.301091 3_2:+48190897 None:intergenic
CATTATCATTGGCAGCATTC+TGG 0.303561 3_2:+48188557 None:intergenic
TTGCTGCCAGAGAACCTTCT+TGG 0.313236 3_2:-48188902 Msa0408390:CDS
ACATCACATGTTCCAGAAAA+TGG 0.317138 3_2:+48187115 None:intergenic
TGATAGAAAGGTGGATGAAT+TGG 0.324293 3_2:-48188940 Msa0408390:intron
CATGATGATATTGGCCTTGT+TGG 0.385210 3_2:-48187420 Msa0408390:CDS
GGGCCAGATCATGATGATAT+TGG 0.392267 3_2:-48187429 Msa0408390:CDS
GTAGAAAATTCTTCTTGTAA+TGG 0.397897 3_2:-48187248 Msa0408390:three_prime_UTR
AATGAAATCATCATTATCAT+TGG 0.404484 3_2:+48188546 None:intergenic
AGTTTAAGCGTACAAAGAAT+TGG 0.405972 3_2:-48187995 Msa0408390:CDS
TTGATTCATAAATGATGTTA+GGG 0.406012 3_2:-48187153 Msa0408390:three_prime_UTR
CTAGTACAACAAGCATTAAT+GGG 0.413684 3_2:-48188633 Msa0408390:CDS
GTTGGATGCATAAGGTTGAT+AGG 0.437167 3_2:+48188579 None:intergenic
AATTCTTCTTGTAATGGAAA+GGG 0.444981 3_2:-48187242 Msa0408390:three_prime_UTR
CCGGTAGCCTCATTAGTTCT+CGG 0.445818 3_2:+48188605 None:intergenic
GCATTCTGGTTGGATGCATA+AGG 0.451104 3_2:+48188571 None:intergenic
ATACACGTTTATTAAGTAGT+TGG 0.462140 3_2:-48187302 Msa0408390:three_prime_UTR
TCGGATTTGACAACGTAGAA+AGG 0.467631 3_2:+48190916 None:intergenic
GACAAGCAGTGCTCGTACTC+AGG 0.468891 3_2:-48188838 Msa0408390:intron
GCCAAGGAGTTCTTCATGTA+TGG 0.471199 3_2:+48187958 None:intergenic
CTCAAATTCAAACCTGGCCA+AGG 0.481619 3_2:+48187942 None:intergenic
GTTGGAAGCCTTCTTGTCCA+TGG 0.484114 3_2:-48187284 Msa0408390:three_prime_UTR
GCCATACCAAGAAGGTTCTC+TGG 0.485751 3_2:+48188896 None:intergenic
TATTTGGGCTGATAGGCAAC+AGG 0.487675 3_2:-48188038 Msa0408390:intron
ATGAAGAAAGCTAGTGCAAA+GGG 0.498351 3_2:-48187449 Msa0408390:CDS
ACAAAACATGCCCTCAGCTC+AGG 0.499980 3_2:-48190941 Msa0408390:exon
ATGAAGAAAACAGTGGATGC+TGG 0.500370 3_2:-48188664 Msa0408390:CDS
GGCTGATAGGCAACAGGATG+AGG 0.505234 3_2:-48188032 Msa0408390:intron
AGATTGAAAATCGGAGGAGA+TGG 0.505923 3_2:-48188860 Msa0408390:CDS
ACATGAAGAACTCCTTGGCC+AGG 0.518816 3_2:-48187954 Msa0408390:intron
AGGCCAATATCATCATGATC+TGG 0.522649 3_2:+48187426 None:intergenic
GCCAGAGAACCTTCTTGGTA+TGG 0.522757 3_2:-48188897 Msa0408390:CDS
AAATTCTTCTTGTAATGGAA+AGG 0.526500 3_2:-48187243 Msa0408390:three_prime_UTR
GCATAAGGTTGATAGGAATC+CGG 0.527293 3_2:+48188586 None:intergenic
GTGCTGTTTGTATATGGAAA+GGG 0.530190 3_2:-48187345 Msa0408390:three_prime_UTR
ATGTGAAAGCGTAGAATGGC+AGG 0.533008 3_2:-48189864 Msa0408390:intron
ACAGTAACACTGACTAGGTA+AGG 0.536833 3_2:+48187366 None:intergenic
ATGATGCTGAGATTGAAAAT+CGG 0.537272 3_2:-48188869 Msa0408390:CDS
ATCAGAAACCATGGACAAGA+AGG 0.543485 3_2:+48187276 None:intergenic
CTGGATGTGAAAGCGTAGAA+TGG 0.546832 3_2:-48189868 Msa0408390:CDS
ATTCTTCTTGTAATGGAAAG+GGG 0.555830 3_2:-48187241 Msa0408390:three_prime_UTR
ATCATTGGCAGCATTCTGGT+TGG 0.560569 3_2:+48188561 None:intergenic
GTACAAAGAATTGGAGGCGT+TGG 0.561989 3_2:-48187986 Msa0408390:CDS
GAAAAGATTATAGATGAACT+TGG 0.564446 3_2:-48187750 Msa0408390:CDS
GAAAATGAACAAGGCCAACA+AGG 0.572030 3_2:+48187406 None:intergenic
ACCATACATGAAGAACTCCT+TGG 0.572624 3_2:-48187959 Msa0408390:CDS
TTCTTCTTGTAATGGAAAGG+GGG 0.576342 3_2:-48187240 Msa0408390:three_prime_UTR
TTAAGCGTACAAAGAATTGG+AGG 0.583419 3_2:-48187992 Msa0408390:CDS
CCGAGAACTAATGAGGCTAC+CGG 0.587919 3_2:-48188605 Msa0408390:CDS
GGATGCACCGAGAACTAATG+AGG 0.594871 3_2:-48188612 Msa0408390:CDS
AGATGAACTTGGTAACGAGA+TGG 0.600755 3_2:-48187739 Msa0408390:CDS
TCATCAATGCCATACCAAGA+AGG 0.603070 3_2:+48188888 None:intergenic
TAGAATAGAAGAGTTATACA+TGG 0.603798 3_2:+48187065 None:intergenic
TAGAAAGGATCCTGAGCTGA+GGG 0.604695 3_2:+48190931 None:intergenic
TATGAAGAAAGCTAGTGCAA+AGG 0.617789 3_2:-48187450 Msa0408390:CDS
TGATTCATAAATGATGTTAG+GGG 0.620396 3_2:-48187152 Msa0408390:three_prime_UTR
TCTTCTTGTAATGGAAAGGG+GGG 0.621812 3_2:-48187239 Msa0408390:three_prime_UTR
GAAAGTACGTGTTACGAAGG+AGG 0.625731 3_2:-48189897 Msa0408390:CDS
TGTGCTGTTTGTATATGGAA+AGG 0.627364 3_2:-48187346 Msa0408390:three_prime_UTR
TCCAGAAAATGGTCTAAACA+AGG 0.628120 3_2:+48187126 None:intergenic
ATGCTGAGATTGAAAATCGG+AGG 0.637923 3_2:-48188866 Msa0408390:CDS
ACAGCACAGTAACACTGACT+AGG 0.644500 3_2:+48187361 None:intergenic
CTACTGTCTATCAGAAACCA+TGG 0.645280 3_2:+48187267 None:intergenic
GTAGAAAGGATCCTGAGCTG+AGG 0.654695 3_2:+48190930 None:intergenic
TGGCACAATGAAGAAAACAG+TGG 0.692931 3_2:-48188671 Msa0408390:CDS
AGAGAAAGTACGTGTTACGA+AGG 0.698114 3_2:-48189900 Msa0408390:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTCAATTTTATTTGA+TGG - chr3_2:48187399-48187418 Msa0408390:CDS 10.0%
!! AATAAATAACCAAAAAATTA+GGG + chr3_2:48187716-48187735 None:intergenic 10.0%
!! AAATAAATAACCAAAAAATT+AGG + chr3_2:48187717-48187736 None:intergenic 10.0%
!!! TGATTTATTTTATATCTATT+TGG - chr3_2:48190067-48190086 Msa0408390:intron 10.0%
!!! GATTTATTTTATATCTATTT+GGG - chr3_2:48190068-48190087 Msa0408390:intron 10.0%
!! ATAAATAACCAAAAAATTAG+GGG + chr3_2:48187715-48187734 None:intergenic 15.0%
!!! ATTTATTTGATTATGCTTTT+TGG - chr3_2:48187729-48187748 Msa0408390:CDS 15.0%
!! AAATACAGTATGAAAATTTA+GGG - chr3_2:48187862-48187881 Msa0408390:intron 15.0%
!!! TTTTGAGTTAAAATTGATTT+GGG - chr3_2:48187885-48187904 Msa0408390:intron 15.0%
!! AAATACAATACGAAAATTTA+GGG - chr3_2:48188000-48188019 Msa0408390:CDS 15.0%
!!! ATGAGTTTTAATGAATAATA+AGG + chr3_2:48189866-48189885 None:intergenic 15.0%
!!! TTTTCATGTTTTTTACATTA+TGG + chr3_2:48189960-48189979 None:intergenic 15.0%
!! AACTAAAATATTAACCAAAA+AGG + chr3_2:48190046-48190065 None:intergenic 15.0%
!!! AAAATGTTTCTCTTTTATTA+TGG - chr3_2:48190625-48190644 Msa0408390:intron 15.0%
!!! GAACTATTTTGATAAAATTT+TGG - chr3_2:48190939-48190958 Msa0408390:exon 15.0%
!! AAATAAACCCTATGTAATTT+GGG + chr3_2:48187273-48187292 None:intergenic 20.0%
!! AAAATAAACCCTATGTAATT+TGG + chr3_2:48187274-48187293 None:intergenic 20.0%
!! TTACATATTAAGTGTTATGA+GGG + chr3_2:48187328-48187347 None:intergenic 20.0%
!! ATTACATATTAAGTGTTATG+AGG + chr3_2:48187329-48187348 None:intergenic 20.0%
!!! TTGATGGTTTTTTTAGTATT+TGG - chr3_2:48187415-48187434 Msa0408390:CDS 20.0%
!! AATTCATTTCCTAATTTCTT+TGG - chr3_2:48187439-48187458 Msa0408390:CDS 20.0%
!! GATTAATAACCAAAGAAATT+AGG + chr3_2:48187451-48187470 None:intergenic 20.0%
!! TTTGGTTATTAATCTGATTA+CGG - chr3_2:48187457-48187476 Msa0408390:CDS 20.0%
!!! TTTCACATTGCATTTATTTT+CGG + chr3_2:48187593-48187612 None:intergenic 20.0%
!! TAAATGCAATGTGAAAATTT+AGG - chr3_2:48187597-48187616 Msa0408390:intron 20.0%
!! AAATGCAATGTGAAAATTTA+GGG - chr3_2:48187598-48187617 Msa0408390:intron 20.0%
!! TAAATAACCAAAAAATTAGG+GGG + chr3_2:48187714-48187733 None:intergenic 20.0%
!! GAAATACAGTATGAAAATTT+AGG - chr3_2:48187861-48187880 Msa0408390:intron 20.0%
!!! GTTTTGAGTTAAAATTGATT+TGG - chr3_2:48187884-48187903 Msa0408390:intron 20.0%
!! CAAAATCATACATCATAATT+GGG + chr3_2:48187945-48187964 None:intergenic 20.0%
!! TCAAAATCATACATCATAAT+TGG + chr3_2:48187946-48187965 None:intergenic 20.0%
!! GAAATACAATACGAAAATTT+AGG - chr3_2:48187999-48188018 Msa0408390:CDS 20.0%
!! AATACAATACGAAAATTTAG+GGG - chr3_2:48188001-48188020 Msa0408390:CDS 20.0%
!! AGTTGAAATTGAATGTAAAA+TGG - chr3_2:48188028-48188047 Msa0408390:intron 20.0%
!! GTTGAAATTGAATGTAAAAT+GGG - chr3_2:48188029-48188048 Msa0408390:intron 20.0%
!! CAATGTTTAATTGATAAGAT+TGG - chr3_2:48188072-48188091 Msa0408390:intron 20.0%
!!! ATTTTAAAGCTTACTTTTCT+AGG - chr3_2:48188447-48188466 Msa0408390:intron 20.0%
!! GGTATTAAGAATAATAAACT+CGG + chr3_2:48188533-48188552 None:intergenic 20.0%
!!! AGTATTTTGTTTTGATAGAA+AGG - chr3_2:48189169-48189188 Msa0408390:intron 20.0%
!! AATGAAATCATCATTATCAT+TGG + chr3_2:48189578-48189597 None:intergenic 20.0%
!! TGGAATCAGAAATAAATATA+AGG - chr3_2:48189921-48189940 Msa0408390:CDS 20.0%
!! AATAGTTTAGAAATTTGTCT+GGG - chr3_2:48189990-48190009 Msa0408390:intron 20.0%
!!! TGATTGATAATAGTGTTTTT+TGG - chr3_2:48190917-48190936 Msa0408390:CDS 20.0%
!! TTTGATTCATAAATGATGTT+AGG - chr3_2:48190967-48190986 Msa0408390:five_prime_UTR 20.0%
!! TTGATTCATAAATGATGTTA+GGG - chr3_2:48190968-48190987 Msa0408390:five_prime_UTR 20.0%
! ACTTACAGATTCTTGAATTT+CGG + chr3_2:48187227-48187246 None:intergenic 25.0%
!!! TTTTTTTCCCCAAATTACAT+AGG - chr3_2:48187262-48187281 Msa0408390:three_prime_UTR 25.0%
!!! TTTTTTCCCCAAATTACATA+GGG - chr3_2:48187263-48187282 Msa0408390:three_prime_UTR 25.0%
! AATAAACCCTATGTAATTTG+GGG + chr3_2:48187272-48187291 None:intergenic 25.0%
! TACATATTAAGTGTTATGAG+GGG + chr3_2:48187327-48187346 None:intergenic 25.0%
!! ATTAATCTGATTACGGTTTT+TGG - chr3_2:48187464-48187483 Msa0408390:CDS 25.0%
! TGCTCAAAATCCAAAATTTA+TGG + chr3_2:48187491-48187510 None:intergenic 25.0%
! TGCTCAAAATCTCAAATTTA+GGG + chr3_2:48187919-48187938 None:intergenic 25.0%
!! TAATTGATAAGATTGGTTCT+TGG - chr3_2:48188079-48188098 Msa0408390:intron 25.0%
!! TTTCTAGGTTCATCTAATTT+TGG - chr3_2:48188462-48188481 Msa0408390:intron 25.0%
! ATTATTCTTAATACCACTGT+TGG - chr3_2:48188538-48188557 Msa0408390:CDS 25.0%
! TTATTCTTAATACCACTGTT+GGG - chr3_2:48188539-48188558 Msa0408390:CDS 25.0%
! TTTAAATTATATCCCAACAG+TGG + chr3_2:48188554-48188573 None:intergenic 25.0%
! TAGTTGTGTTAAATAGTCAA+GGG + chr3_2:48188661-48188680 None:intergenic 25.0%
! TTAGTTGTGTTAAATAGTCA+AGG + chr3_2:48188662-48188681 None:intergenic 25.0%
!! GATTTTCATTCACATTTGTT+TGG - chr3_2:48188821-48188840 Msa0408390:intron 25.0%
! AAACAAAATACTTCAGCATT+TGG + chr3_2:48189161-48189180 None:intergenic 25.0%
!!! ATTTTGTTTTGATAGAAAGG+TGG - chr3_2:48189172-48189191 Msa0408390:intron 25.0%
!! CATCTTTCTTTTCTTTACTT+TGG - chr3_2:48189677-48189696 Msa0408390:intron 25.0%
!! GCTAATATTTAGTTCATGTT+TGG - chr3_2:48189834-48189853 Msa0408390:intron 25.0%
! ATTAAAACTCATAACTGAGA+TGG - chr3_2:48189874-48189893 Msa0408390:CDS 25.0%
!!! TTTCCTTTTTTCTTTCGTTA+TGG - chr3_2:48189901-48189920 Msa0408390:CDS 25.0%
! ATTCCATAACGAAAGAAAAA+AGG + chr3_2:48189907-48189926 None:intergenic 25.0%
!! TTTTACATTATGGTTACGTA+AGG + chr3_2:48189950-48189969 None:intergenic 25.0%
! CAATAGTTTAGAAATTTGTC+TGG - chr3_2:48189989-48190008 Msa0408390:intron 25.0%
!!! GGAAATATAATTAGCCTTTT+TGG - chr3_2:48190029-48190048 Msa0408390:intron 25.0%
!! AGACAAAATTACAAAAGCAT+AGG + chr3_2:48190304-48190323 None:intergenic 25.0%
! GAAAAGATTATAGATGAACT+TGG - chr3_2:48190371-48190390 Msa0408390:intron 25.0%
! TCAAAGAGAAAATGAAAACT+AGG + chr3_2:48190453-48190472 None:intergenic 25.0%
! AGATTACTGTTGTGAAATAA+TGG - chr3_2:48190540-48190559 Msa0408390:intron 25.0%
! ACTCATATAATCTTGTAAAG+AGG - chr3_2:48190601-48190620 Msa0408390:intron 25.0%
! GAAAAATAGGAAAATGAACA+AGG + chr3_2:48190727-48190746 None:intergenic 25.0%
! TAAGGAAGACTAAGAAAAAT+AGG + chr3_2:48190740-48190759 None:intergenic 25.0%
!!! AAGGGATAACATTTTTTGTT+TGG - chr3_2:48190794-48190813 Msa0408390:intron 25.0%
! ATACACGTTTATTAAGTAGT+TGG - chr3_2:48190819-48190838 Msa0408390:intron 25.0%
! GTAGAAAATTCTTCTTGTAA+TGG - chr3_2:48190873-48190892 Msa0408390:intron 25.0%
!! AAATTCTTCTTGTAATGGAA+AGG - chr3_2:48190878-48190897 Msa0408390:intron 25.0%
!! AATTCTTCTTGTAATGGAAA+GGG - chr3_2:48190879-48190898 Msa0408390:intron 25.0%
! TGATTCATAAATGATGTTAG+GGG - chr3_2:48190969-48190988 Msa0408390:five_prime_UTR 25.0%
! TAGAATAGAAGAGTTATACA+TGG + chr3_2:48191059-48191078 None:intergenic 25.0%
ACATATTAAGTGTTATGAGG+GGG + chr3_2:48187326-48187345 None:intergenic 30.0%
CTTGAAAATGCTGTGAATTT+AGG - chr3_2:48187350-48187369 Msa0408390:three_prime_UTR 30.0%
!!! GGTTTTTGGTCCATAAATTT+TGG - chr3_2:48187478-48187497 Msa0408390:intron 30.0%
CAAATTCACAGGTTTCAATT+GGG + chr3_2:48187517-48187536 None:intergenic 30.0%
TCAAATTCACAGGTTTCAAT+TGG + chr3_2:48187518-48187537 None:intergenic 30.0%
! TTTAACCAGATTACGCTTTT+TGG - chr3_2:48187646-48187665 Msa0408390:intron 30.0%
!! GCTTTTTGGTGCATAAATTT+GGG - chr3_2:48187660-48187679 Msa0408390:intron 30.0%
! AGATTTTCCCCCTAATTTTT+TGG - chr3_2:48187704-48187723 Msa0408390:intron 30.0%
CAAATTCACAGATCTCAATT+GGG + chr3_2:48187782-48187801 None:intergenic 30.0%
TCAAATTCACAGATCTCAAT+TGG + chr3_2:48187783-48187802 None:intergenic 30.0%
CTGCTCAAAATCTCAAATTT+AGG + chr3_2:48187920-48187939 None:intergenic 30.0%
!!! GAGTTCATTATTGGTTTTGT+AGG - chr3_2:48188108-48188127 Msa0408390:intron 30.0%
TATGTAGAGTCGTTGAAAAA+TGG - chr3_2:48188297-48188316 Msa0408390:intron 30.0%
AGTTGTGTTAAATAGTCAAG+GGG + chr3_2:48188660-48188679 None:intergenic 30.0%
ACACAACTAAGTATAACTCA+AGG - chr3_2:48188672-48188691 Msa0408390:CDS 30.0%
ACTAAGTATAACTCAAGGAT+AGG - chr3_2:48188677-48188696 Msa0408390:intron 30.0%
ATTAGACAAGCTTAATGCTA+CGG + chr3_2:48188970-48188989 None:intergenic 30.0%
TCAGCATTTGGTTATAGATT+AGG + chr3_2:48189149-48189168 None:intergenic 30.0%
ATGATGCTGAGATTGAAAAT+CGG - chr3_2:48189252-48189271 Msa0408390:intron 30.0%
!! AATGTATGCCCAATTTTAGT+TGG - chr3_2:48189313-48189332 Msa0408390:intron 30.0%
!!! ATGTATGCCCAATTTTAGTT+GGG - chr3_2:48189314-48189333 Msa0408390:intron 30.0%
! CAATGAGTTGGAAAAGAAAA+TGG + chr3_2:48189349-48189368 None:intergenic 30.0%
TGATTCCTTTCTTGCTTAAT+AGG - chr3_2:48189426-48189445 Msa0408390:intron 30.0%
TCTAGTACAACAAGCATTAA+TGG - chr3_2:48189487-48189506 Msa0408390:intron 30.0%
CTAGTACAACAAGCATTAAT+GGG - chr3_2:48189488-48189507 Msa0408390:intron 30.0%
TACATAAGATTTAGAGAGAG+AGG + chr3_2:48189646-48189665 None:intergenic 30.0%
CTCTCTAAATCTTATGTAAC+TGG - chr3_2:48189648-48189667 Msa0408390:intron 30.0%
! AGCAAAAGTCACTTTAAATG+AGG + chr3_2:48189712-48189731 None:intergenic 30.0%
TTATATCTATTTGGGCTGAT+AGG - chr3_2:48190076-48190095 Msa0408390:intron 30.0%
AGTTTAAGCGTACAAAGAAT+TGG - chr3_2:48190126-48190145 Msa0408390:intron 30.0%
! TTTGTAATTTTGTCTTCGTC+AGG - chr3_2:48190309-48190328 Msa0408390:intron 30.0%
! TTGTAATTTTGTCTTCGTCA+GGG - chr3_2:48190310-48190329 Msa0408390:intron 30.0%
TGTCAAAATCTTATTGCTTC+AGG - chr3_2:48190349-48190368 Msa0408390:intron 30.0%
ATTATGGTTGCAGAAAAAAG+TGG - chr3_2:48190641-48190660 Msa0408390:intron 30.0%
! ATTCTTCTTGTAATGGAAAG+GGG - chr3_2:48190880-48190899 Msa0408390:intron 30.0%
!! CGCTTTTTGGTGCATAAATT+TGG - chr3_2:48187659-48187678 Msa0408390:intron 35.0%
!! TGCTTTTTGGTGCATAAAGT+TGG - chr3_2:48187742-48187761 Msa0408390:CDS 35.0%
!! GCTTTTTGGTGCATAAAGTT+GGG - chr3_2:48187743-48187762 Msa0408390:CDS 35.0%
! TTGATAAGATTGGTTCTTGG+TGG - chr3_2:48188082-48188101 Msa0408390:intron 35.0%
! TGATAAGATTGGTTCTTGGT+GGG - chr3_2:48188083-48188102 Msa0408390:intron 35.0%
!! TGCAATCTACTTTTGAGCAA+TGG - chr3_2:48188178-48188197 Msa0408390:intron 35.0%
! TTTGCATGAGCACTTACTTT+TGG - chr3_2:48188372-48188391 Msa0408390:intron 35.0%
! TACTTTTGGATGGTTTCTGT+TGG - chr3_2:48188386-48188405 Msa0408390:intron 35.0%
! ACTTTTGGATGGTTTCTGTT+GGG - chr3_2:48188387-48188406 Msa0408390:intron 35.0%
TGTTAAATAGTCAAGGGGAA+GGG + chr3_2:48188655-48188674 None:intergenic 35.0%
GATTTGGATAGGAAAGCAAA+GGG + chr3_2:48188725-48188744 None:intergenic 35.0%
! TTCATATTTTACAGCTTCCC+CGG + chr3_2:48188772-48188791 None:intergenic 35.0%
AAAGAGTGAAGAGTTGAGAA+TGG - chr3_2:48188845-48188864 Msa0408390:CDS 35.0%
TGTGTAATGAATGTAGCCTA+AGG + chr3_2:48189063-48189082 None:intergenic 35.0%
CACAGAATTAAAGACTGAGT+AGG + chr3_2:48189125-48189144 None:intergenic 35.0%
CTACTCAGTCTTTAATTCTG+TGG - chr3_2:48189123-48189142 Msa0408390:intron 35.0%
TGATAGAAAGGTGGATGAAT+TGG - chr3_2:48189181-48189200 Msa0408390:intron 35.0%
GCATCTTCCCAACTAAAATT+GGG + chr3_2:48189324-48189343 None:intergenic 35.0%
TGCATCTTCCCAACTAAAAT+TGG + chr3_2:48189325-48189344 None:intergenic 35.0%
ACAACTACTACACAATGAGT+TGG + chr3_2:48189361-48189380 None:intergenic 35.0%
TCCTTTCTTGCTTAATAGGT+TGG - chr3_2:48189430-48189449 Msa0408390:intron 35.0%
TTAAGCGTACAAAGAATTGG+AGG - chr3_2:48190129-48190148 Msa0408390:intron 35.0%
AAAGCTCTCAAATTCAAACC+TGG + chr3_2:48190188-48190207 None:intergenic 35.0%
TATGAAGAAAGCTAGTGCAA+AGG - chr3_2:48190671-48190690 Msa0408390:intron 35.0%
ATGAAGAAAGCTAGTGCAAA+GGG - chr3_2:48190672-48190691 Msa0408390:intron 35.0%
!! GTTACTGTGCTGTTTGTATA+TGG - chr3_2:48190770-48190789 Msa0408390:intron 35.0%
!! TGTGCTGTTTGTATATGGAA+AGG - chr3_2:48190775-48190794 Msa0408390:intron 35.0%
!! GTGCTGTTTGTATATGGAAA+GGG - chr3_2:48190776-48190795 Msa0408390:intron 35.0%
! TTCTTCTTGTAATGGAAAGG+GGG - chr3_2:48190881-48190900 Msa0408390:intron 35.0%
!! TCCTTGTTTAGACCATTTTC+TGG - chr3_2:48190994-48191013 Msa0408390:five_prime_UTR 35.0%
TCCAGAAAATGGTCTAAACA+AGG + chr3_2:48190998-48191017 None:intergenic 35.0%
ACATCACATGTTCCAGAAAA+TGG + chr3_2:48191009-48191028 None:intergenic 35.0%
!! GGGCATGTTTTGTTATGGAT+CGG + chr3_2:48187173-48187192 None:intergenic 40.0%
TCGGATTTGACAACGTAGAA+AGG + chr3_2:48187208-48187227 None:intergenic 40.0%
GTGCAACACTTCAAATTCAC+AGG + chr3_2:48187528-48187547 None:intergenic 40.0%
! ATGCACCAAAAAGCGTAATC+TGG + chr3_2:48187654-48187673 None:intergenic 40.0%
! AGAGAAAGTACGTGTTACGA+AGG - chr3_2:48188221-48188240 Msa0408390:intron 40.0%
GTAAGTGCTCATGCAAACAA+TGG + chr3_2:48188369-48188388 None:intergenic 40.0%
!! CATGAGCACTTACTTTTGGA+TGG - chr3_2:48188376-48188395 Msa0408390:intron 40.0%
GTTAAATAGTCAAGGGGAAG+GGG + chr3_2:48188654-48188673 None:intergenic 40.0%
GTGTTAAATAGTCAAGGGGA+AGG + chr3_2:48188656-48188675 None:intergenic 40.0%
GGATTTGGATAGGAAAGCAA+AGG + chr3_2:48188726-48188745 None:intergenic 40.0%
TTGCTTTCCTATCCAAATCC+TGG - chr3_2:48188726-48188745 Msa0408390:intron 40.0%
CTACACAAGTCCCAAAAATG+CGG - chr3_2:48188898-48188917 Msa0408390:CDS 40.0%
TACACAAGTCCCAAAAATGC+GGG - chr3_2:48188899-48188918 Msa0408390:CDS 40.0%
GTAATGAATGTAGCCTAAGG+TGG + chr3_2:48189060-48189079 None:intergenic 40.0%
TCATCAATGCCATACCAAGA+AGG + chr3_2:48189236-48189255 None:intergenic 40.0%
ATGCTGAGATTGAAAATCGG+AGG - chr3_2:48189255-48189274 Msa0408390:intron 40.0%
AGATTGAAAATCGGAGGAGA+TGG - chr3_2:48189261-48189280 Msa0408390:intron 40.0%
GCCAACCTATTAAGCAAGAA+AGG + chr3_2:48189434-48189453 None:intergenic 40.0%
TGGCACAATGAAGAAAACAG+TGG - chr3_2:48189450-48189469 Msa0408390:intron 40.0%
ATGAAGAAAACAGTGGATGC+TGG - chr3_2:48189457-48189476 Msa0408390:intron 40.0%
!! GCATAAGGTTGATAGGAATC+CGG + chr3_2:48189538-48189557 None:intergenic 40.0%
! GTTGGATGCATAAGGTTGAT+AGG + chr3_2:48189545-48189564 None:intergenic 40.0%
CATTATCATTGGCAGCATTC+TGG + chr3_2:48189567-48189586 None:intergenic 40.0%
ATTAGTCACACATGCAGACA+CGG + chr3_2:48189753-48189772 None:intergenic 40.0%
CTGGGCATACTTATGATTTC+TGG - chr3_2:48190008-48190027 Msa0408390:intron 40.0%
ACCATACATGAAGAACTCCT+TGG - chr3_2:48190162-48190181 Msa0408390:intron 40.0%
!! AGATGAACTTGGTAACGAGA+TGG - chr3_2:48190382-48190401 Msa0408390:intron 40.0%
ACTAGGTGAAGAAACTCACT+TGG + chr3_2:48190436-48190455 None:intergenic 40.0%
GTTGCAGAAAAAAGTGGCAA+TGG - chr3_2:48190647-48190666 Msa0408390:intron 40.0%
AGGCCAATATCATCATGATC+TGG + chr3_2:48190698-48190717 None:intergenic 40.0%
!! CATGATGATATTGGCCTTGT+TGG - chr3_2:48190701-48190720 Msa0408390:intron 40.0%
GAAAATGAACAAGGCCAACA+AGG + chr3_2:48190718-48190737 None:intergenic 40.0%
! ACAGTAACACTGACTAGGTA+AGG + chr3_2:48190758-48190777 None:intergenic 40.0%
ATCAGAAACCATGGACAAGA+AGG + chr3_2:48190848-48190867 None:intergenic 40.0%
CTACTGTCTATCAGAAACCA+TGG + chr3_2:48190857-48190876 None:intergenic 40.0%
! TCTTCTTGTAATGGAAAGGG+GGG - chr3_2:48190882-48190901 Msa0408390:intron 40.0%
!! GCTGAGGGCATGTTTTGTTA+TGG + chr3_2:48187178-48187197 None:intergenic 45.0%
TAGAAAGGATCCTGAGCTGA+GGG + chr3_2:48187193-48187212 None:intergenic 45.0%
TGGTGGGACGAGTTCATTAT+TGG - chr3_2:48188099-48188118 Msa0408390:intron 45.0%
! GAAAGTACGTGTTACGAAGG+AGG - chr3_2:48188224-48188243 Msa0408390:intron 45.0%
GTTACGAAGGAGGTTCTTTC+TGG - chr3_2:48188234-48188253 Msa0408390:intron 45.0%
! CTGGATGTGAAAGCGTAGAA+TGG - chr3_2:48188253-48188272 Msa0408390:intron 45.0%
! ATGTGAAAGCGTAGAATGGC+AGG - chr3_2:48188257-48188276 Msa0408390:intron 45.0%
ATAGGAAAGCAAAGGGCAAG+AGG + chr3_2:48188718-48188737 None:intergenic 45.0%
GGAATCTCCAGGATTTGGAT+AGG + chr3_2:48188736-48188755 None:intergenic 45.0%
! TTCACTCCACCCGCATTTTT+GGG + chr3_2:48188911-48188930 None:intergenic 45.0%
! TTTCACTCCACCCGCATTTT+TGG + chr3_2:48188912-48188931 None:intergenic 45.0%
CCTAAGGTGGAAAACAGAGT+AGG + chr3_2:48189047-48189066 None:intergenic 45.0%
! CCTACTCTGTTTTCCACCTT+AGG - chr3_2:48189044-48189063 Msa0408390:intron 45.0%
AGACTGAGTAGGACGAAGAA+TGG + chr3_2:48189114-48189133 None:intergenic 45.0%
! GCATTCTGGTTGGATGCATA+AGG + chr3_2:48189553-48189572 None:intergenic 45.0%
ATCATTGGCAGCATTCTGGT+TGG + chr3_2:48189563-48189582 None:intergenic 45.0%
TATTTGGGCTGATAGGCAAC+AGG - chr3_2:48190083-48190102 Msa0408390:intron 45.0%
! GTACAAAGAATTGGAGGCGT+TGG - chr3_2:48190135-48190154 Msa0408390:intron 45.0%
GCCAAGGAGTTCTTCATGTA+TGG + chr3_2:48190166-48190185 None:intergenic 45.0%
CTCAAATTCAAACCTGGCCA+AGG + chr3_2:48190182-48190201 None:intergenic 45.0%
GGGCCAGATCATGATGATAT+TGG - chr3_2:48190692-48190711 Msa0408390:intron 45.0%
! ACAGCACAGTAACACTGACT+AGG + chr3_2:48190763-48190782 None:intergenic 45.0%
!! ATTGAAAAATAAATAAAAAA+AGG - chr3_2:48187079-48187098 Msa0408390:three_prime_UTR 5.0%
!! TTGAAAAATAAATAAAAAAA+GGG - chr3_2:48187080-48187099 Msa0408390:three_prime_UTR 5.0%
ACAAAACATGCCCTCAGCTC+AGG - chr3_2:48187180-48187199 Msa0408390:three_prime_UTR 50.0%
GTAGAAAGGATCCTGAGCTG+AGG + chr3_2:48187194-48187213 None:intergenic 50.0%
! GAAAGCGTAGAATGGCAGGT+AGG - chr3_2:48188261-48188280 Msa0408390:intron 50.0%
TCCAAATCCTGGAGATTCCC+TGG - chr3_2:48188737-48188756 Msa0408390:intron 50.0%
CCAAATCCTGGAGATTCCCT+GGG - chr3_2:48188738-48188757 Msa0408390:intron 50.0%
ACAAGTCCCAAAAATGCGGG+TGG - chr3_2:48188902-48188921 Msa0408390:CDS 50.0%
TTGCTGCCAGAGAACCTTCT+TGG - chr3_2:48189219-48189238 Msa0408390:intron 50.0%
GCCAGAGAACCTTCTTGGTA+TGG - chr3_2:48189224-48189243 Msa0408390:intron 50.0%
GCCATACCAAGAAGGTTCTC+TGG + chr3_2:48189228-48189247 None:intergenic 50.0%
GGATGCACCGAGAACTAATG+AGG - chr3_2:48189509-48189528 Msa0408390:intron 50.0%
! CCGGTAGCCTCATTAGTTCT+CGG + chr3_2:48189519-48189538 None:intergenic 50.0%
CCGAGAACTAATGAGGCTAC+CGG - chr3_2:48189516-48189535 Msa0408390:intron 50.0%
ACATGAAGAACTCCTTGGCC+AGG - chr3_2:48190167-48190186 Msa0408390:intron 50.0%
GTTGGAAGCCTTCTTGTCCA+TGG - chr3_2:48190837-48190856 Msa0408390:intron 50.0%
CCCAGGGAATCTCCAGGATT+TGG + chr3_2:48188741-48188760 None:intergenic 55.0%
AGCATACCCAGGGAATCTCC+AGG + chr3_2:48188747-48188766 None:intergenic 55.0%
GATTCCCTGGGTATGCTTGC+CGG - chr3_2:48188750-48188769 Msa0408390:intron 55.0%
ATTCCCTGGGTATGCTTGCC+GGG - chr3_2:48188751-48188770 Msa0408390:intron 55.0%
GACAAGCAGTGCTCGTACTC+AGG - chr3_2:48189283-48189302 Msa0408390:intron 55.0%
GGCTGATAGGCAACAGGATG+AGG - chr3_2:48190089-48190108 Msa0408390:intron 55.0%
TTCCCTGGGTATGCTTGCCG+GGG - chr3_2:48188752-48188771 Msa0408390:intron 60.0%
TTCCCCGGCAAGCATACCCA+GGG + chr3_2:48188757-48188776 None:intergenic 60.0%
CTTCCCCGGCAAGCATACCC+AGG + chr3_2:48188758-48188777 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 48187055 48191088 48187055 ID=Msa0408390;Name=Msa0408390
chr3_2 mRNA 48187055 48191088 48187055 ID=Msa0408390-mRNA-1;Parent=Msa0408390;Name=Msa0408390-mRNA-1;_AED=0.04;_eAED=0.04;_QI=132|1|1|1|1|1|7|324|243
chr3_2 exon 48187055 48187489 48187055 ID=Msa0408390-mRNA-1:exon:9333;Parent=Msa0408390-mRNA-1
chr3_2 exon 48187707 48187772 48187707 ID=Msa0408390-mRNA-1:exon:9332;Parent=Msa0408390-mRNA-1
chr3_2 exon 48187955 48188045 48187955 ID=Msa0408390-mRNA-1:exon:9331;Parent=Msa0408390-mRNA-1
chr3_2 exon 48188511 48188695 48188511 ID=Msa0408390-mRNA-1:exon:9330;Parent=Msa0408390-mRNA-1
chr3_2 exon 48188839 48188952 48188839 ID=Msa0408390-mRNA-1:exon:9329;Parent=Msa0408390-mRNA-1
chr3_2 exon 48189865 48189975 48189865 ID=Msa0408390-mRNA-1:exon:9328;Parent=Msa0408390-mRNA-1
chr3_2 exon 48190903 48191088 48190903 ID=Msa0408390-mRNA-1:exon:9327;Parent=Msa0408390-mRNA-1
chr3_2 five_prime_UTR 48190957 48191088 48190957 ID=Msa0408390-mRNA-1:five_prime_utr;Parent=Msa0408390-mRNA-1
chr3_2 CDS 48190903 48190956 48190903 ID=Msa0408390-mRNA-1:cds;Parent=Msa0408390-mRNA-1
chr3_2 CDS 48189865 48189975 48189865 ID=Msa0408390-mRNA-1:cds;Parent=Msa0408390-mRNA-1
chr3_2 CDS 48188839 48188952 48188839 ID=Msa0408390-mRNA-1:cds;Parent=Msa0408390-mRNA-1
chr3_2 CDS 48188511 48188695 48188511 ID=Msa0408390-mRNA-1:cds;Parent=Msa0408390-mRNA-1
chr3_2 CDS 48187955 48188045 48187955 ID=Msa0408390-mRNA-1:cds;Parent=Msa0408390-mRNA-1
chr3_2 CDS 48187707 48187772 48187707 ID=Msa0408390-mRNA-1:cds;Parent=Msa0408390-mRNA-1
chr3_2 CDS 48187379 48187489 48187379 ID=Msa0408390-mRNA-1:cds;Parent=Msa0408390-mRNA-1
chr3_2 three_prime_UTR 48187055 48187378 48187055 ID=Msa0408390-mRNA-1:three_prime_utr;Parent=Msa0408390-mRNA-1
Gene Sequence

>Msa0408390

ATGCCCTCAGCTCAGGATCCTTTCTACGTTGTCAAATCCGAAATTCAAGAATCTATTGATAATCTGCAATCTACTTTTGAGCAATGGAAACGTACTTCTGATGCTGCAGAGAAAGTACGTGTTACGAAGGAGGTTCTTTCTGGATGTGAAAGCGTAGAATGGCAGGTGGATGAATTGGAAAAAGCAATTGCTGTTGCTGCCAGAGAACCTTCTTGGTATGGCATTGATGATGCTGAGATTGAAAATCGGAGGAGATGGACAAGCAGTGCTCGTACTCAGGTTGGCACAATGAAGAAAACAGTGGATGCTGGAAAGAGCTCTAGTACAACAAGCATTAATGGGATGCACCGAGAACTAATGAGGCTACCGGATTCCTATCAACCTTATGCATCCAACCAGAATGCTGCCAATGATAATGATGATTTCATTCAATCAGAATCAGATAGACAGATGCTTCTTATAAAGCAACAGGATGAGGAGTTAGATGAACTTAGTTTAAGCGTACAAAGAATTGGAGGCGTTGGACTCACCATACATGAAGAACTCCTTGGCCAGGAAAAGATTATAGATGAACTTGGTAACGAGATGGACAGTACATCAAATCGTCTTGATTTTGTCCAAAAAAAAGTGGCAATGGTTATGAAGAAAGCTAGTGCAAAGGGCCAGATCATGATGATATTGGCCTTGTTGGCCTTGTTCATTTTCCTATTTTTCTTAGTCTTCCTTACCTAG

Protein sequence

>Msa0408390

MPSAQDPFYVVKSEIQESIDNLQSTFEQWKRTSDAAEKVRVTKEVLSGCESVEWQVDELEKAIAVAAREPSWYGIDDAEIENRRRWTSSARTQVGTMKKTVDAGKSSSTTSINGMHRELMRLPDSYQPYASNQNAANDNDDFIQSESDRQMLLIKQQDEELDELSLSVQRIGGVGLTIHEELLGQEKIIDELGNEMDSTSNRLDFVQKKVAMVMKKASAKGQIMMILALLALFIFLFFLVFLT*