AlfalfaGEDB | Msa1346110

M. sativa cultivar zhongmu-4 / Msa1346110

KEGG: K09903
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1346110	XP_024629653.2	89.873	158	12	2	1	158	1	154	1.17e-77	244

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1346110	sp\|Q9LSA9\|PUMPK_ARATH	83.333	84	12	1	77	158	85	168	6.91e-42	145

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1346110	A0A396GWA1	89.873	158	12	2	1	158	1	154	5.61e-78	244

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0012460	Msa1346110	0.802132	6.485490e-49	-8.615850e-47
Msa0017940	Msa1346110	0.816036	6.800838e-52	-8.615850e-47
Msa0062750	Msa1346110	0.816845	4.482120e-52	-8.615850e-47
Msa0065390	Msa1346110	0.807083	6.009445e-50	-8.615850e-47
Msa0073350	Msa1346110	0.806006	1.014256e-49	-8.615850e-47
Msa0084680	Msa1346110	0.820420	6.924707e-53	-8.615850e-47
Msa0089210	Msa1346110	0.803072	4.150825e-49	-8.615850e-47
Msa0090800	Msa1346110	0.827219	1.765522e-54	-8.615850e-47
Msa0091480	Msa1346110	0.810986	8.776073e-51	-8.615850e-47
Msa0091550	Msa1346110	0.838856	2.242307e-57	-8.615850e-47
Msa0104420	Msa1346110	0.811453	6.948602e-51	-8.615850e-47
Msa0107460	Msa1346110	0.807414	5.113247e-50	-8.615850e-47
Msa0110710	Msa1346110	0.801691	7.989018e-49	-8.615850e-47
Msa0112290	Msa1346110	0.803733	3.028555e-49	-8.615850e-47
Msa0115010	Msa1346110	0.803160	3.979353e-49	-8.615850e-47
Msa1346110	Msa1398740	0.811173	7.990297e-51	-8.615850e-47
Msa1346110	Msa1410170	0.812847	3.449814e-51	-8.615850e-47
Msa1346110	Msa1412520	0.812807	3.521015e-51	-8.615850e-47
Msa1346110	Msa1415250	0.820153	7.971082e-53	-8.615850e-47
Msa1346110	Msa1422490	0.807722	4.400107e-50	-8.615850e-47
Msa1346110	Msa1423190	0.810635	1.045282e-50	-8.615850e-47
Msa1346110	Msa1430760	0.800867	1.178077e-48	-8.615850e-47
Msa1346110	Msa1439800	0.802443	5.597370e-49	-8.615850e-47
Msa1346110	Msa1442030	0.825100	5.633386e-54	-8.615850e-47
Msa1346110	Msa1458330	0.802510	5.422690e-49	-8.615850e-47
Msa0605620	Msa1346110	0.803335	3.661909e-49	-8.615850e-47
Msa0607300	Msa1346110	0.813976	1.948617e-51	-8.615850e-47
Msa0623270	Msa1346110	0.819501	1.123646e-52	-8.615850e-47
Msa0639370	Msa1346110	0.803870	2.836128e-49	-8.615850e-47
Msa0640880	Msa1346110	0.806786	6.947231e-50	-8.615850e-47
Msa0647710	Msa1346110	0.806215	9.166636e-50	-8.615850e-47
Msa0659070	Msa1346110	0.832582	8.708757e-56	-8.615850e-47
Msa0667970	Msa1346110	0.804895	1.734390e-49	-8.615850e-47
Msa0682460	Msa1346110	0.800579	1.349033e-48	-8.615850e-47
Msa0703760	Msa1346110	0.821301	4.342538e-53	-8.615850e-47
Msa0704570	Msa1346110	0.802863	4.585215e-49	-8.615850e-47
Msa0704990	Msa1346110	0.804181	2.443457e-49	-8.615850e-47
Msa0705440	Msa1346110	0.926589	3.810637e-91	-8.615850e-47
Msa0709480	Msa1346110	0.805421	1.345581e-49	-8.615850e-47
Msa0780140	Msa1346110	0.816807	4.570913e-52	-8.615850e-47
Msa0790180	Msa1346110	0.809262	2.064380e-50	-8.615850e-47
Msa0804110	Msa1346110	0.811644	6.316061e-51	-8.615850e-47
Msa0824140	Msa1346110	0.804638	1.962501e-49	-8.615850e-47
Msa0130800	Msa1346110	0.804342	2.262146e-49	-8.615850e-47
Msa0135980	Msa1346110	0.807013	6.220185e-50	-8.615850e-47
Msa0157020	Msa1346110	0.811603	6.447320e-51	-8.615850e-47
Msa0157350	Msa1346110	0.817843	2.672163e-52	-8.615850e-47
Msa0173760	Msa1346110	0.811011	8.665471e-51	-8.615850e-47
Msa0173850	Msa1346110	0.809491	1.843457e-50	-8.615850e-47
Msa0175280	Msa1346110	0.800782	1.226329e-48	-8.615850e-47
Msa0206940	Msa1346110	0.832298	1.023695e-55	-8.615850e-47
Msa0236330	Msa1346110	0.806148	9.470468e-50	-8.615850e-47
Msa1226360	Msa1346110	0.803098	4.099277e-49	-8.615850e-47
Msa1228950	Msa1346110	0.819213	1.307248e-52	-8.615850e-47
Msa1234960	Msa1346110	0.808501	3.002914e-50	-8.615850e-47
Msa1238730	Msa1346110	0.818011	2.448624e-52	-8.615850e-47
Msa1259470	Msa1346110	0.806201	9.228043e-50	-8.615850e-47
Msa1271600	Msa1346110	0.819142	1.356480e-52	-8.615850e-47
Msa1309100	Msa1346110	0.826249	3.009200e-54	-8.615850e-47
Msa0367370	Msa1346110	0.803231	3.847181e-49	-8.615850e-47
Msa0373130	Msa1346110	0.809119	2.214684e-50	-8.615850e-47
Msa0380650	Msa1346110	0.805972	1.031212e-49	-8.615850e-47
Msa0387790	Msa1346110	0.815459	9.143618e-52	-8.615850e-47
Msa0399180	Msa1346110	0.813835	2.093009e-51	-8.615850e-47
Msa0415050	Msa1346110	0.815818	7.608274e-52	-8.615850e-47
Msa0430290	Msa1346110	0.803136	4.026719e-49	-8.615850e-47
Msa0480150	Msa1346110	0.805467	1.316207e-49	-8.615850e-47
Msa1027790	Msa1346110	0.807858	4.115911e-50	-8.615850e-47
Msa1029320	Msa1346110	0.809887	1.515438e-50	-8.615850e-47
Msa1032140	Msa1346110	0.829914	3.942319e-55	-8.615850e-47
Msa1033790	Msa1346110	0.822190	2.704759e-53	-8.615850e-47
Msa1040390	Msa1346110	0.801510	8.704904e-49	-8.615850e-47
Msa1067430	Msa1346110	0.818838	1.590119e-52	-8.615850e-47
Msa1072080	Msa1346110	0.801934	7.123046e-49	-8.615850e-47
Msa1080620	Msa1346110	0.829841	4.107729e-55	-8.615850e-47
Msa1080690	Msa1346110	0.828691	7.810681e-55	-8.615850e-47
Msa1084490	Msa1346110	0.815456	9.161793e-52	-8.615850e-47
Msa0242290	Msa1346110	0.813236	2.834577e-51	-8.615850e-47
Msa0247310	Msa1346110	0.815838	7.530715e-52	-8.615850e-47
Msa0250520	Msa1346110	0.846311	2.352238e-59	-8.615850e-47
Msa0280140	Msa1346110	0.810089	1.370781e-50	-8.615850e-47
Msa1112610	Msa1346110	0.801397	9.177799e-49	-8.615850e-47
Msa1125950	Msa1346110	0.800801	1.215632e-48	-8.615850e-47
Msa1126310	Msa1346110	0.832048	1.180584e-55	-8.615850e-47
Msa1127900	Msa1346110	0.821803	3.324343e-53	-8.615850e-47
Msa1132820	Msa1346110	0.804780	1.832513e-49	-8.615850e-47
Msa1143630	Msa1346110	0.928603	2.287017e-92	-8.615850e-47
Msa1145370	Msa1346110	0.831517	1.595776e-55	-8.615850e-47
Msa1156210	Msa1346110	0.809415	1.913963e-50	-8.615850e-47
Msa1157330	Msa1346110	0.813899	2.026400e-51	-8.615850e-47
Msa1165810	Msa1346110	0.825471	4.604514e-54	-8.615850e-47
Msa1166180	Msa1346110	0.810374	1.190119e-50	-8.615850e-47
Msa1166280	Msa1346110	0.810524	1.104664e-50	-8.615850e-47
Msa1167160	Msa1346110	0.833483	5.197221e-56	-8.615850e-47
Msa1197110	Msa1346110	0.800603	1.333760e-48	-8.615850e-47
Msa1208750	Msa1346110	0.814469	1.516183e-51	-8.615850e-47
Msa1219250	Msa1346110	0.824784	6.691698e-54	-8.615850e-47
Msa1222580	Msa1346110	0.803542	3.316601e-49	-8.615850e-47
Msa0482960	Msa1346110	0.827572	1.453194e-54	-8.615850e-47
Msa0485280	Msa1346110	0.819696	1.014085e-52	-8.615850e-47
Msa0512310	Msa1346110	0.812267	4.621002e-51	-8.615850e-47
Msa0519200	Msa1346110	0.811949	5.419502e-51	-8.615850e-47
Msa0528740	Msa1346110	0.805073	1.592098e-49	-8.615850e-47
Msa0579610	Msa1346110	0.820847	5.523834e-53	-8.615850e-47
Msa0581460	Msa1346110	0.815216	1.035588e-51	-8.615850e-47
Msa0587900	Msa1346110	0.806753	7.056862e-50	-8.615850e-47
Msa0589290	Msa1346110	0.804774	1.837911e-49	-8.615850e-47
Msa0600390	Msa1346110	0.815692	8.114585e-52	-8.615850e-47
Msa0867340	Msa1346110	0.836272	1.031390e-56	-8.615850e-47
Msa0893390	Msa1346110	0.822808	1.942573e-53	-8.615850e-47
Msa0898720	Msa1346110	0.817133	3.861797e-52	-8.615850e-47
Msa0946650	Msa1346110	0.832171	1.100873e-55	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1346110	MtrunA17_Chr8g0384081	89.873	158	12	2	1	158	1	154	1.08e-81	244
Msa1346110	MtrunA17_Chr1g0179531	51.948	77	37	0	82	158	269	345	4.17e-21	88.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1346110	AT3G18680.1	83.333	84	12	1	77	158	85	168	7.03e-43	145
Msa1346110	AT3G18680.2	83.333	84	12	1	77	158	85	168	8.96e-43	145
Msa1346110	AT3G10030.2	55.844	77	34	0	81	157	297	373	6.76e-22	91.3
Msa1346110	AT3G10030.1	55.844	77	34	0	81	157	297	373	8.25e-22	91.3

Find 116 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AGCAAAACCCTTCTCCATTT+TGG	0.146176	tig0008210:-647	None:intergenic
CCCCTGATGCCTTCAATTCC+AGG	0.190673	tig0008210:+470	Msa1346110:CDS
TTTAGGCAACAGAGGATATT+TGG	0.193820	tig0008210:-2370	None:intergenic
AAAATAATGCACCTCCATTT+TGG	0.219123	tig0008210:-3364	None:intergenic
GCCAACTCTCTCACCTTTAA+TGG	0.225362	tig0008210:-3226	None:intergenic
GAGCAGTATATATACAAATT+TGG	0.230836	tig0008210:+2186	Msa1346110:three_prime_UTR
TTCTTGGCTAAAAGAGATTA+AGG	0.242093	tig0008210:-2101	None:intergenic
ATGAAGATTAAAGGTATTCT+TGG	0.280442	tig0008210:-2117	None:intergenic
GAGAGAGTTGGCACTTTGAT+TGG	0.297652	tig0008210:+3237	Msa1346110:three_prime_UTR
CGCTCTTCTTATTCCGGAAA+TGG	0.304042	tig0008210:+442	Msa1346110:CDS
CAAGATGGCAAGATAAAATT+AGG	0.307993	tig0008210:-3500	None:intergenic
TACACTTAGACAAAAGTTTA+CGG	0.318941	tig0008210:-2318	None:intergenic
AGGAAGGGAAGAAGAGAAAG+AGG	0.328454	tig0008210:+262	Msa1346110:five_prime_UTR
CGCTCATCTGCTGATTATAT+TGG	0.329732	tig0008210:+2068	Msa1346110:CDS
ATGAATCTAGTAAGCCAAAA+TGG	0.334137	tig0008210:+633	Msa1346110:CDS
TCCAGCTGAGGATGCCAAAA+TGG	0.336098	tig0008210:+3350	Msa1346110:three_prime_UTR
AACATAGAGAAGGCCATTAA+AGG	0.337991	tig0008210:+3213	Msa1346110:three_prime_UTR
AGTAGAAGTGAAAGCGTAAT+AGG	0.341402	tig0008210:+242	Msa1346110:five_prime_UTR
TTCCGTGGAGCCTCGTGGGC+TGG	0.355160	tig0008210:+2029	Msa1346110:CDS
TACTAAATGCAGGAAATTGC+AGG	0.356000	tig0008210:-2228	None:intergenic
TGTCAAGAAAATAATATTCC+TGG	0.362510	tig0008210:+3040	Msa1346110:three_prime_UTR
CGCGCTTGAGGGTTACGCTT+TGG	0.368748	tig0008210:-2941	None:intergenic
AGAGAGTTGGCACTTTGATT+GGG	0.369637	tig0008210:+3238	Msa1346110:three_prime_UTR
GAGAAAGAATCACTTGTAAT+TGG	0.370269	tig0008210:-3307	None:intergenic
ACTATTCGCTCTTCTTATTC+CGG	0.373416	tig0008210:+436	Msa1346110:CDS
AACCTGGAATTGAAGGCATC+AGG	0.382214	tig0008210:-472	None:intergenic
CAGAAGGGCTGTGAGGCATT+TGG	0.389622	tig0008210:+2573	Msa1346110:three_prime_UTR
CTCAAAGCTACAAATGTTGA+TGG	0.395632	tig0008210:+2902	Msa1346110:three_prime_UTR
TATTTGCCATCCACGTGGTT+TGG	0.399529	tig0008210:+3477	Msa1346110:three_prime_UTR
TCTTGATACACTAACCTATC+AGG	0.400311	tig0008210:+2967	Msa1346110:three_prime_UTR
ATCAGGGGAAGAACCATTTC+CGG	0.405657	tig0008210:-455	None:intergenic
AGGTTGCACTAGTTGTTGGT+GGG	0.406958	tig0008210:+1997	Msa1346110:intron
GGAAGAAGAGAAAGAGGGTT+TGG	0.414374	tig0008210:+268	Msa1346110:five_prime_UTR
ACAGCCCTTCTGCGTATATA+CGG	0.417983	tig0008210:-2562	None:intergenic
AATGCAGTTTGTACTCTAGT+TGG	0.432080	tig0008210:-2517	None:intergenic
GTTTGGCGGCAGCAGCATAA+TGG	0.438289	tig0008210:+285	Msa1346110:exon
TGACTTCTCAACCCTGGTAG+TGG	0.439432	tig0008210:+3556	Msa1346110:three_prime_UTR
GCTCATCTGCTGATTATATT+GGG	0.440239	tig0008210:+2069	Msa1346110:CDS
TGATTTATCGTGTAGGATGC+TGG	0.449284	tig0008210:+2441	Msa1346110:three_prime_UTR
GAAATAATGAAGTGCGAGAA+GGG	0.451481	tig0008210:-393	None:intergenic
CAGGTTGCACTAGTTGTTGG+TGG	0.453785	tig0008210:+1996	Msa1346110:intron
GAAGTGAAAGCGTAATAGGA+AGG	0.456433	tig0008210:+246	Msa1346110:five_prime_UTR
TTTCAGGTTGCACTAGTTGT+TGG	0.459501	tig0008210:+1993	Msa1346110:intron
GATAAGGTGGAGGAGAATAG+AGG	0.465090	tig0008210:-319	None:intergenic
ATGGCCTTCTCTATGTTACC+TGG	0.476740	tig0008210:-3207	None:intergenic
AATGTAATGGAGCCACTACC+AGG	0.477038	tig0008210:-3568	None:intergenic
TCTTGGCTAAAAGAGATTAA+GGG	0.483300	tig0008210:-2100	None:intergenic
GTTAGCGGAGAAGCACTTGC+TGG	0.485759	tig0008210:+674	Msa1346110:CDS
GGTTGCACTAGTTGTTGGTG+GGG	0.491388	tig0008210:+1998	Msa1346110:intron
CGAAATAATGAAGTGCGAGA+AGG	0.493787	tig0008210:-394	None:intergenic
TCATTCATTGACAGTGCAAA+CGG	0.494942	tig0008210:-614	None:intergenic
CAAAATCTGTAAATATAACT+AGG	0.499278	tig0008210:+3430	Msa1346110:three_prime_UTR
GTCACGAGAGACAAAACGTT+GGG	0.509202	tig0008210:+2259	Msa1346110:three_prime_UTR
GACACAAAGTTATGGCAGTA+AGG	0.512526	tig0008210:-3021	None:intergenic
GCTGTGAGGCATTTGGAGAA+AGG	0.516252	tig0008210:+2580	Msa1346110:three_prime_UTR
TATCAAGAAGCCGCGCTTGA+GGG	0.517581	tig0008210:-2952	None:intergenic
ACCTGGAATTGAAGGCATCA+GGG	0.520382	tig0008210:-471	None:intergenic
AGCTCAGAATATTGACCCTA+AGG	0.522546	tig0008210:+703	Msa1346110:CDS
CATCTTCCGTGGAGCCTCGT+GGG	0.524475	tig0008210:+2025	Msa1346110:CDS
TGAGGCATTTGGAGAAAGGA+AGG	0.528380	tig0008210:+2584	Msa1346110:three_prime_UTR
CAAGCAACAATGGAGAGTAT+TGG	0.530508	tig0008210:+2490	Msa1346110:three_prime_UTR
AGCTGCCACTTCCCTTGCAA+TGG	0.532682	tig0008210:-1628	None:intergenic
GTTGCACTAGTTGTTGGTGG+GGG	0.534947	tig0008210:+1999	Msa1346110:CDS
GCCTCGTGGGCTGGAAGTAG+TGG	0.535611	tig0008210:+2038	Msa1346110:CDS
AGAAGAAGAAGATAAGGTGG+AGG	0.535808	tig0008210:-329	None:intergenic
GGAAGGGAAGAAGAGAAAGA+GGG	0.536077	tig0008210:+263	Msa1346110:five_prime_UTR
TATGTCCATTGCAAGGGAAG+TGG	0.540950	tig0008210:+1623	Msa1346110:CDS
CTAGTAAGCCAAAATGGAGA+AGG	0.541861	tig0008210:+639	Msa1346110:CDS
GGAGTTGAGTGCTAATGTAA+TGG	0.544063	tig0008210:-3581	None:intergenic
AACAAAAGATCTGTCAGTGA+TGG	0.552161	tig0008210:+2997	Msa1346110:three_prime_UTR
TTGTATTTGATTTATCGTGT+AGG	0.555193	tig0008210:+2434	Msa1346110:three_prime_UTR
AGTCACCTCAATGCCATGGC+GGG	0.556629	tig0008210:-1655	None:intergenic
ATATATAAAACCACACAAGA+TGG	0.556692	tig0008210:-3515	None:intergenic
AGAAGAGAAAGAGGGTTTGG+CGG	0.557746	tig0008210:+271	Msa1346110:five_prime_UTR
CAAAACGTTGGGTGTGTATG+TGG	0.561975	tig0008210:+2270	Msa1346110:three_prime_UTR
ACATCTTCCGTGGAGCCTCG+TGG	0.568791	tig0008210:+2024	Msa1346110:CDS
GTTATGCAATCTTCCAGCTG+AGG	0.573018	tig0008210:+3338	Msa1346110:three_prime_UTR
TTCCAGCCCACGAGGCTCCA+CGG	0.573341	tig0008210:-2031	None:intergenic
AAGTGAAAGCGTAATAGGAA+GGG	0.573559	tig0008210:+247	Msa1346110:five_prime_UTR
TGACAGTGCAAACGGAGACA+TGG	0.577417	tig0008210:-606	None:intergenic
GAGAGTTGGCACTTTGATTG+GGG	0.578321	tig0008210:+3239	Msa1346110:three_prime_UTR
AACTGCATTTCGCATGTCTG+AGG	0.580501	tig0008210:+2531	Msa1346110:three_prime_UTR
GCCATTAAAGGTGAGAGAGT+TGG	0.582841	tig0008210:+3225	Msa1346110:three_prime_UTR
GCAGTGTCTGTGGTAAAGAA+TGG	0.584543	tig0008210:-2637	None:intergenic
GTATCAAGAAGCCGCGCTTG+AGG	0.587429	tig0008210:-2953	None:intergenic
ATTAGGCCAAACCACGTGGA+TGG	0.587448	tig0008210:-3483	None:intergenic
CAGAACCGTATATACGCAGA+AGG	0.587562	tig0008210:+2557	Msa1346110:three_prime_UTR
CCTGGAATTGAAGGCATCAG+GGG	0.588255	tig0008210:-470	None:intergenic
AGGTAACTATGTCCATTGCA+AGG	0.590385	tig0008210:+1616	Msa1346110:intron
GTGGCAGCTGTAACCCGCCA+TGG	0.592749	tig0008210:+1642	Msa1346110:CDS
TTACAAGTGATTCTTTCTCG+TGG	0.599326	tig0008210:+3311	Msa1346110:three_prime_UTR
ATAAGAAGAGCGAATAGTGA+AGG	0.604127	tig0008210:-431	None:intergenic
TATATTTCTTCAAGCAACAA+TGG	0.604226	tig0008210:+2480	Msa1346110:three_prime_UTR
AAGTGCTGCGGCAGTGTCTG+TGG	0.607764	tig0008210:-2647	None:intergenic
TAGTAAGCCAAAATGGAGAA+GGG	0.608078	tig0008210:+640	Msa1346110:CDS
GGTAACTATGTCCATTGCAA+GGG	0.611344	tig0008210:+1617	Msa1346110:intron
ATTACATTAGCACTCAACTC+CGG	0.611534	tig0008210:+3583	Msa1346110:three_prime_UTR
AGTGCAAACGGAGACATGGA+TGG	0.616393	tig0008210:-602	None:intergenic
CAAACCAGGTAACATAGAGA+AGG	0.618925	tig0008210:+3203	Msa1346110:three_prime_UTR
TGTAACCCGCCATGGCATTG+AGG	0.619412	tig0008210:+1650	Msa1346110:CDS
GTGTAGTCACCTCAATGCCA+TGG	0.622683	tig0008210:-1659	None:intergenic
AAATAATGAAGTGCGAGAAG+GGG	0.626409	tig0008210:-392	None:intergenic
GAGGCATTTGGAGAAAGGAA+GGG	0.627211	tig0008210:+2585	Msa1346110:three_prime_UTR
TTCTGCACATCTAAGTGCTG+CGG	0.632064	tig0008210:-2659	None:intergenic
AGCTGAGGATGCCAAAATGG+AGG	0.651978	tig0008210:+3353	Msa1346110:three_prime_UTR
GCACTTTGATTGGGGCAACG+TGG	0.653598	tig0008210:+3247	Msa1346110:three_prime_UTR
GTCTTCAATCTAAACAAACC+AGG	0.655408	tig0008210:+3189	Msa1346110:three_prime_UTR
CAATATAATCAGCAGATGAG+CGG	0.655659	tig0008210:-2067	None:intergenic
TAAAATTAGGCCAAACCACG+TGG	0.657171	tig0008210:-3487	None:intergenic
ACCACTACTTCCAGCCCACG+AGG	0.679613	tig0008210:-2039	None:intergenic
ATGTAATGGAGCCACTACCA+GGG	0.690330	tig0008210:-3567	None:intergenic
TAGTCACCTCAATGCCATGG+CGG	0.694102	tig0008210:-1656	None:intergenic
AGAACCGTATATACGCAGAA+GGG	0.702130	tig0008210:+2558	Msa1346110:three_prime_UTR
CAAAGCGTAACCCTCAAGCG+CGG	0.708280	tig0008210:+2942	Msa1346110:three_prime_UTR
TGTCACGAGAGACAAAACGT+TGG	0.721287	tig0008210:+2258	Msa1346110:three_prime_UTR
ATATACGCAGAAGGGCTGTG+AGG	0.766075	tig0008210:+2566	Msa1346110:three_prime_UTR

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAAATAAAGATATAAATTGC+AGG	-	tig0008210:736-755	None:intergenic	15.0%
!!!	AGACAATTTTTTATTAATAC+AGG	-	tig0008210:939-958	None:intergenic	15.0%
!!	AGAAAATATAAAGATAAAAC+TGG	+	tig0008210:1474-1493	Msa1346110:intron	15.0%
!!!	AAAATGCTAAATTTTTACTT+TGG	+	tig0008210:2342-2361	Msa1346110:three_prime_UTR	15.0%
!!!	AAATGCTAAATTTTTACTTT+GGG	+	tig0008210:2343-2362	Msa1346110:three_prime_UTR	15.0%
!!!	ACATTGTATTAAACATTTTT+AGG	-	tig0008210:2390-2409	None:intergenic	15.0%
!!!	TGATTACACAGTTAATTTTT+CGG	+	tig0008210:967-986	Msa1346110:intron	20.0%
!!!	AAACTGGTAATAAACAATTT+TGG	+	tig0008210:1490-1509	Msa1346110:intron	20.0%
!!!	AACTGGTAATAAACAATTTT+GGG	+	tig0008210:1491-1510	Msa1346110:intron	20.0%
!!!	AGATTTTGATTTTGTTTTTG+TGG	+	tig0008210:1583-1602	Msa1346110:intron	20.0%
!!!	GATTTTGATTTTGTTTTTGT+GGG	+	tig0008210:1584-1603	Msa1346110:intron	20.0%
!!	TACTTTGCAATATAATCTTT+AGG	+	tig0008210:1821-1840	Msa1346110:intron	20.0%
!!	ACTTTGCAATATAATCTTTA+GGG	+	tig0008210:1822-1841	Msa1346110:intron	20.0%
!!!	AAGTTTTGAATGAAGATTAA+AGG	-	tig0008210:2129-2148	None:intergenic	20.0%
!!!	AATGCTAAATTTTTACTTTG+GGG	+	tig0008210:2344-2363	Msa1346110:three_prime_UTR	20.0%
!!	AAATACAATTACAAAAAAGC+AGG	-	tig0008210:2422-2441	None:intergenic	20.0%
!!	AAAACTATAAACTAATGAAC+AGG	-	tig0008210:2795-2814	None:intergenic	20.0%
!!	AAGTAAATAGCAATAAATAC+CGG	-	tig0008210:2852-2871	None:intergenic	20.0%
!!	CAAAATCTGTAAATATAACT+AGG	+	tig0008210:3430-3449	Msa1346110:three_prime_UTR	20.0%
!	TGAATATTAGATGAAAAACC+TGG	-	tig0008210:491-510	None:intergenic	25.0%
!	GGCATAAAGGATAAATAAAA+AGG	-	tig0008210:514-533	None:intergenic	25.0%
!	TAGTAAATTAACAGAAACGA+AGG	-	tig0008210:535-554	None:intergenic	25.0%
!	TCGTTTCTGTTAATTTACTA+TGG	+	tig0008210:535-554	Msa1346110:intron	25.0%
!	TGATTAATTGAATTGTTGAC+AGG	+	tig0008210:564-583	Msa1346110:intron	25.0%
!!!	TACTTTCAGCATTAGTTTTT+TGG	+	tig0008210:913-932	Msa1346110:intron	25.0%
!	ACTTTGCTCTAACTTTAAAT+AGG	+	tig0008210:1107-1126	Msa1346110:intron	25.0%
!	CTTTGCTCTAACTTTAAATA+GGG	+	tig0008210:1108-1127	Msa1346110:intron	25.0%
!	TAAAAAGTGAGATGAAATCT+GGG	-	tig0008210:1441-1460	None:intergenic	25.0%
!	ATAAAAAGTGAGATGAAATC+TGG	-	tig0008210:1442-1461	None:intergenic	25.0%
!	ATATGGCAAGATATTTCATT+TGG	-	tig0008210:1538-1557	None:intergenic	25.0%
!!!	ATTTTTTCACTAGTTTCCTT+CGG	+	tig0008210:1693-1712	Msa1346110:intron	25.0%
!	ACTACAAAAAATAAAACCGA+AGG	-	tig0008210:1712-1731	None:intergenic	25.0%
!	CTTTGCAATATAATCTTTAG+GGG	+	tig0008210:1823-1842	Msa1346110:intron	25.0%
!!	TTGAATCATTTCAAGTCAAA+GGG	-	tig0008210:1925-1944	None:intergenic	25.0%
!!	ATTGAATCATTTCAAGTCAA+AGG	-	tig0008210:1926-1945	None:intergenic	25.0%
!!!	AATGATTCAATGCTTTTTAC+TGG	+	tig0008210:1935-1954	Msa1346110:intron	25.0%
!!	ACAGTTTGGTTTATAATGAT+TGG	+	tig0008210:1963-1982	Msa1346110:intron	25.0%
!!	CAGTTTGGTTTATAATGATT+GGG	+	tig0008210:1964-1983	Msa1346110:intron	25.0%
!!!	ATGAAGATTAAAGGTATTCT+TGG	-	tig0008210:2120-2139	None:intergenic	25.0%
!	GAGCAGTATATATACAAATT+TGG	+	tig0008210:2186-2205	Msa1346110:three_prime_UTR	25.0%
!!	ACAAACTTTTTACTAAATGC+AGG	-	tig0008210:2241-2260	None:intergenic	25.0%
!	TACACTTAGACAAAAGTTTA+CGG	-	tig0008210:2321-2340	None:intergenic	25.0%
!!	TTGTATTTGATTTATCGTGT+AGG	+	tig0008210:2434-2453	Msa1346110:three_prime_UTR	25.0%
!	TATATTTCTTCAAGCAACAA+TGG	+	tig0008210:2480-2499	Msa1346110:three_prime_UTR	25.0%
!!!	TTTTGTTATTACATCCTGAT+AGG	-	tig0008210:2984-3003	None:intergenic	25.0%
!!	ATTTTCTTGACACAAAGTTA+TGG	-	tig0008210:3032-3051	None:intergenic	25.0%
!	TGTCAAGAAAATAATATTCC+TGG	+	tig0008210:3040-3059	Msa1346110:three_prime_UTR	25.0%
!	ATCAGGACAATAAATACAAT+AGG	-	tig0008210:3135-3154	None:intergenic	25.0%
!!	ATATTTTCACGTTCTTGATA+TGG	-	tig0008210:3280-3299	None:intergenic	25.0%
!	ATATATAAAACCACACAAGA+TGG	-	tig0008210:3518-3537	None:intergenic	25.0%
!!!	CTTTTTTTCAATGCATGTTA+TGG	+	tig0008210:3608-3627	Msa1346110:three_prime_UTR	25.0%
	AGAAGAAGAAGAAGAAGATA+AGG	-	tig0008210:338-357	None:intergenic	30.0%
	ATGAATCTAGTAAGCCAAAA+TGG	+	tig0008210:633-652	Msa1346110:CDS	30.0%
	CAATATTGTAACTGAAAGCT+CGG	-	tig0008210:814-833	None:intergenic	30.0%
	AAAAAGTGAGATGAAATCTG+GGG	-	tig0008210:1440-1459	None:intergenic	30.0%
!!!	TGATTTTGTTTTTGTGGGTT+TGG	+	tig0008210:1589-1608	Msa1346110:intron	30.0%
	TGTAGTCACCAGTATTATTT+GGG	+	tig0008210:1874-1893	Msa1346110:intron	30.0%
	ATAAACTCCCCAAATAATAC+TGG	-	tig0008210:1885-1904	None:intergenic	30.0%
!!!	TTTTACTGGTTTTCACAGTT+TGG	+	tig0008210:1949-1968	Msa1346110:intron	30.0%
	TCTTGGCTAAAAGAGATTAA+GGG	-	tig0008210:2103-2122	None:intergenic	30.0%
	TTCTTGGCTAAAAGAGATTA+AGG	-	tig0008210:2104-2123	None:intergenic	30.0%
!!	TAAACATTTTTAGGCAACAG+AGG	-	tig0008210:2381-2400	None:intergenic	30.0%
	ATTAATCATGTGCTTCAAAC+CGG	+	tig0008210:2830-2849	Msa1346110:intron	30.0%
!	ATTCTTTTCAGTTAATGCAG+AGG	+	tig0008210:2874-2893	Msa1346110:intron	30.0%
	TGATTGAAATCAACTCAGAT+TGG	+	tig0008210:3108-3127	Msa1346110:intron	30.0%
	GAGAAAGAATCACTTGTAAT+TGG	-	tig0008210:3310-3329	None:intergenic	30.0%
!	AAAATAATGCACCTCCATTT+TGG	-	tig0008210:3367-3386	None:intergenic	30.0%
	CAAGATGGCAAGATAAAATT+AGG	-	tig0008210:3503-3522	None:intergenic	30.0%
	CATGCATTGAAAAAAAGAAC+CGG	-	tig0008210:3605-3624	None:intergenic	30.0%
!	AGTAGAAGTGAAAGCGTAAT+AGG	+	tig0008210:242-261	Msa1346110:five_prime_UTR	35.0%
!	AAGTGAAAGCGTAATAGGAA+GGG	+	tig0008210:247-266	Msa1346110:five_prime_UTR	35.0%
	AGAAGAAGAAGAAGATAAGG+TGG	-	tig0008210:335-354	None:intergenic	35.0%
	AAATAATGAAGTGCGAGAAG+GGG	-	tig0008210:395-414	None:intergenic	35.0%
	GAAATAATGAAGTGCGAGAA+GGG	-	tig0008210:396-415	None:intergenic	35.0%
	ATAAGAAGAGCGAATAGTGA+AGG	-	tig0008210:434-453	None:intergenic	35.0%
	ACTATTCGCTCTTCTTATTC+CGG	+	tig0008210:436-455	Msa1346110:CDS	35.0%
	GATGAAAAACCTGGAATTGA+AGG	-	tig0008210:482-501	None:intergenic	35.0%
!	TAACAGAAACGAAGGCATAA+AGG	-	tig0008210:527-546	None:intergenic	35.0%
	TCATTCATTGACAGTGCAAA+CGG	-	tig0008210:617-636	None:intergenic	35.0%
	TAGTAAGCCAAAATGGAGAA+GGG	+	tig0008210:640-659	Msa1346110:CDS	35.0%
	ACGAAGTAGCCAACAAAAAT+TGG	-	tig0008210:1082-1101	None:intergenic	35.0%
	AAAAGTGAGATGAAATCTGG+GGG	-	tig0008210:1439-1458	None:intergenic	35.0%
	AAGTCAAGAGCAACATCATA+TGG	-	tig0008210:1555-1574	None:intergenic	35.0%
	CATGCATTCAATTAACCAAG+GGG	-	tig0008210:1765-1784	None:intergenic	35.0%
	CCATGCATTCAATTAACCAA+GGG	-	tig0008210:1766-1785	None:intergenic	35.0%
	ACCATGCATTCAATTAACCA+AGG	-	tig0008210:1767-1786	None:intergenic	35.0%
!	TTGAATGCATGGTTTGAAGT+AGG	+	tig0008210:1774-1793	Msa1346110:intron	35.0%
	ACAGATTACAAAACAGGTAC+CGG	-	tig0008210:1857-1876	None:intergenic	35.0%
	GTGACTACAGATTACAAAAC+AGG	-	tig0008210:1863-1882	None:intergenic	35.0%
	CTGTAGTCACCAGTATTATT+TGG	+	tig0008210:1873-1892	Msa1346110:intron	35.0%
	GTAGTCACCAGTATTATTTG+GGG	+	tig0008210:1875-1894	Msa1346110:intron	35.0%
	CAATATAATCAGCAGATGAG+CGG	-	tig0008210:2070-2089	None:intergenic	35.0%
!	GCTCATCTGCTGATTATATT+GGG	+	tig0008210:2069-2088	Msa1346110:CDS	35.0%
	TACTAAATGCAGGAAATTGC+AGG	-	tig0008210:2231-2250	None:intergenic	35.0%
	TTTAGGCAACAGAGGATATT+TGG	-	tig0008210:2373-2392	None:intergenic	35.0%
	AATGCAGTTTGTACTCTAGT+TGG	-	tig0008210:2520-2539	None:intergenic	35.0%
	TCATTCTCGCATCTTCATAA+AGG	+	tig0008210:2746-2765	Msa1346110:intron	35.0%
	CATTCTCGCATCTTCATAAA+GGG	+	tig0008210:2747-2766	Msa1346110:intron	35.0%
	CTCAAAGCTACAAATGTTGA+TGG	+	tig0008210:2902-2921	Msa1346110:three_prime_UTR	35.0%
	TCTTGATACACTAACCTATC+AGG	+	tig0008210:2967-2986	Msa1346110:three_prime_UTR	35.0%
	AACAAAAGATCTGTCAGTGA+TGG	+	tig0008210:2997-3016	Msa1346110:three_prime_UTR	35.0%
	GTCTTCAATCTAAACAAACC+AGG	+	tig0008210:3189-3208	Msa1346110:three_prime_UTR	35.0%
	AACATAGAGAAGGCCATTAA+AGG	+	tig0008210:3213-3232	Msa1346110:three_prime_UTR	35.0%
	TTACAAGTGATTCTTTCTCG+TGG	+	tig0008210:3311-3330	Msa1346110:three_prime_UTR	35.0%
!!!	TTTTTTATTTGCCATCCACG+TGG	+	tig0008210:3472-3491	Msa1346110:three_prime_UTR	35.0%
!	TTTTATCTTGCCATCTTGTG+TGG	+	tig0008210:3505-3524	Msa1346110:three_prime_UTR	35.0%
!!!	ATTTTTTGACTTCTCAACCC+TGG	+	tig0008210:3550-3569	Msa1346110:three_prime_UTR	35.0%
	ATTACATTAGCACTCAACTC+CGG	+	tig0008210:3583-3602	Msa1346110:three_prime_UTR	35.0%
!	GAAGTGAAAGCGTAATAGGA+AGG	+	tig0008210:246-265	Msa1346110:five_prime_UTR	40.0%
	AGAAGAAGAAGATAAGGTGG+AGG	-	tig0008210:332-351	None:intergenic	40.0%
	CGAAATAATGAAGTGCGAGA+AGG	-	tig0008210:397-416	None:intergenic	40.0%
	CTAGTAAGCCAAAATGGAGA+AGG	+	tig0008210:639-658	Msa1346110:CDS	40.0%
!	AGCAAAACCCTTCTCCATTT+TGG	-	tig0008210:650-669	None:intergenic	40.0%
!	AGGGTTTTGCTCAAAGTTAG+CGG	+	tig0008210:659-678	Msa1346110:CDS	40.0%
	AGCTCAGAATATTGACCCTA+AGG	+	tig0008210:703-722	Msa1346110:CDS	40.0%
!!	AGTTAATTTTTCGGCCCACA+TGG	+	tig0008210:976-995	Msa1346110:intron	40.0%
!!	GTTAATTTTTCGGCCCACAT+GGG	+	tig0008210:977-996	Msa1346110:intron	40.0%
	CAACAAAAATTGGCATCAGG+AGG	-	tig0008210:1072-1091	None:intergenic	40.0%
!	CTCCTGATGCCAATTTTTGT+TGG	+	tig0008210:1070-1089	Msa1346110:intron	40.0%
	AGCCAACAAAAATTGGCATC+AGG	-	tig0008210:1075-1094	None:intergenic	40.0%
	CCAATCCTACAGTCTACTTA+GGG	-	tig0008210:1134-1153	None:intergenic	40.0%
	ACCAATCCTACAGTCTACTT+AGG	-	tig0008210:1135-1154	None:intergenic	40.0%
!!	ATAGAAGTGCCAACAGAAGT+TGG	+	tig0008210:1268-1287	Msa1346110:intron	40.0%
	AGTTGACACGTAAACCACAA+GGG	+	tig0008210:1305-1324	Msa1346110:intron	40.0%
!	GGGGTGATTTGTAAATACGT+AGG	+	tig0008210:1370-1389	Msa1346110:intron	40.0%
	TCAATACAGTCTCCAAGTCT+CGG	-	tig0008210:1406-1425	None:intergenic	40.0%
!	TTGGAGACTGTATTGACCTT+TGG	+	tig0008210:1410-1429	Msa1346110:intron	40.0%
!	TGGAGACTGTATTGACCTTT+GGG	+	tig0008210:1411-1430	Msa1346110:intron	40.0%
	AGGTAACTATGTCCATTGCA+AGG	+	tig0008210:1616-1635	Msa1346110:intron	40.0%
	GGTAACTATGTCCATTGCAA+GGG	+	tig0008210:1617-1636	Msa1346110:intron	40.0%
	CCCTTGGTTAATTGAATGCA+TGG	+	tig0008210:1763-1782	Msa1346110:intron	40.0%
!	TGCATGGTTTGAAGTAGGTT+TGG	+	tig0008210:1779-1798	Msa1346110:intron	40.0%
!	GCATGGTTTGAAGTAGGTTT+GGG	+	tig0008210:1780-1799	Msa1346110:intron	40.0%
!	CATGGTTTGAAGTAGGTTTG+GGG	+	tig0008210:1781-1800	Msa1346110:intron	40.0%
	ACTAGTGCAACCTGAAACAT+CGG	-	tig0008210:1990-2009	None:intergenic	40.0%
!!	TTTCAGGTTGCACTAGTTGT+TGG	+	tig0008210:1993-2012	Msa1346110:intron	40.0%
!	CGCTCATCTGCTGATTATAT+TGG	+	tig0008210:2068-2087	Msa1346110:CDS	40.0%
	TGATTTATCGTGTAGGATGC+TGG	+	tig0008210:2441-2460	Msa1346110:three_prime_UTR	40.0%
!	CAAGCAACAATGGAGAGTAT+TGG	+	tig0008210:2490-2509	Msa1346110:three_prime_UTR	40.0%
	AGAACCGTATATACGCAGAA+GGG	+	tig0008210:2558-2577	Msa1346110:three_prime_UTR	40.0%
	GACACAAAGTTATGGCAGTA+AGG	-	tig0008210:3024-3043	None:intergenic	40.0%
	GTTTGTCTGCTTTACTTACC+AGG	-	tig0008210:3061-3080	None:intergenic	40.0%
	AAGGACAGATACAGTTCATC+AGG	-	tig0008210:3152-3171	None:intergenic	40.0%
	TGAAGACTACAACTGTTCCA+AGG	-	tig0008210:3176-3195	None:intergenic	40.0%
	CAAACCAGGTAACATAGAGA+AGG	+	tig0008210:3203-3222	Msa1346110:three_prime_UTR	40.0%
	AGAGAGTTGGCACTTTGATT+GGG	+	tig0008210:3238-3257	Msa1346110:three_prime_UTR	40.0%
!!	GAGGTGCATTATTTTGCAGT+TGG	+	tig0008210:3372-3391	Msa1346110:three_prime_UTR	40.0%
	TAAAATTAGGCCAAACCACG+TGG	-	tig0008210:3490-3509	None:intergenic	40.0%
	GGAGTTGAGTGCTAATGTAA+TGG	-	tig0008210:3584-3603	None:intergenic	40.0%
	AGGAAGGGAAGAAGAGAAAG+AGG	+	tig0008210:262-281	Msa1346110:five_prime_UTR	45.0%
	GGAAGGGAAGAAGAGAAAGA+GGG	+	tig0008210:263-282	Msa1346110:five_prime_UTR	45.0%
	GGAAGAAGAGAAAGAGGGTT+TGG	+	tig0008210:268-287	Msa1346110:five_prime_UTR	45.0%
	AGAAGAGAAAGAGGGTTTGG+CGG	+	tig0008210:271-290	Msa1346110:five_prime_UTR	45.0%
	GATAAGGTGGAGGAGAATAG+AGG	-	tig0008210:322-341	None:intergenic	45.0%
	CGCTCTTCTTATTCCGGAAA+TGG	+	tig0008210:442-461	Msa1346110:CDS	45.0%
	ATCAGGGGAAGAACCATTTC+CGG	-	tig0008210:458-477	None:intergenic	45.0%
!!	ACCTGGAATTGAAGGCATCA+GGG	-	tig0008210:474-493	None:intergenic	45.0%
!!	AACCTGGAATTGAAGGCATC+AGG	-	tig0008210:475-494	None:intergenic	45.0%
	ATTGCAGGTAGACGACCTTA+GGG	-	tig0008210:721-740	None:intergenic	45.0%
	AATTGCAGGTAGACGACCTT+AGG	-	tig0008210:722-741	None:intergenic	45.0%
	AACACCAGACTAACCCATGT+GGG	-	tig0008210:993-1012	None:intergenic	45.0%
!!	TTAGTCTGGTGTTGTAGCCT+TGG	+	tig0008210:1000-1019	Msa1346110:intron	45.0%
!!	TAGTCTGGTGTTGTAGCCTT+GGG	+	tig0008210:1001-1020	Msa1346110:intron	45.0%
	CTTGAACTTGAGACCTTGAG+AGG	-	tig0008210:1042-1061	None:intergenic	45.0%
	CCCTAAGTAGACTGTAGGAT+TGG	+	tig0008210:1131-1150	Msa1346110:intron	45.0%
	AAAACACGGTATCCGACCTA+GGG	-	tig0008210:1176-1195	None:intergenic	45.0%
	TAAAACACGGTATCCGACCT+AGG	-	tig0008210:1177-1196	None:intergenic	45.0%
	CCAACTGAACCAACTTCTGT+TGG	-	tig0008210:1280-1299	None:intergenic	45.0%
!	CCAACAGAAGTTGGTTCAGT+TGG	+	tig0008210:1277-1296	Msa1346110:intron	45.0%
!	AGAAGTTGGTTCAGTTGGTC+AGG	+	tig0008210:1282-1301	Msa1346110:intron	45.0%
	GAGTTGACACGTAAACCACA+AGG	+	tig0008210:1304-1323	Msa1346110:intron	45.0%
	AGTTGAATTTCGCACCCTTG+TGG	-	tig0008210:1322-1341	None:intergenic	45.0%
!	AAGGGTGCGAAATTCAACTC+CGG	+	tig0008210:1323-1342	Msa1346110:intron	45.0%
	TTACAAATCACCCCCCAACA+AGG	-	tig0008210:1364-1383	None:intergenic	45.0%
!	GTTTTTGTGGGTTTGGATGC+AGG	+	tig0008210:1596-1615	Msa1346110:intron	45.0%
	TATGTCCATTGCAAGGGAAG+TGG	+	tig0008210:1623-1642	Msa1346110:CDS	45.0%
!	TCAACTTGTTTGAGACCCCT+TGG	+	tig0008210:1747-1766	Msa1346110:intron	45.0%
	AATGATTGGGCCGATGTTTC+AGG	+	tig0008210:1977-1996	Msa1346110:intron	45.0%
	AGGTTGCACTAGTTGTTGGT+GGG	+	tig0008210:1997-2016	Msa1346110:intron	45.0%
	TGTCACGAGAGACAAAACGT+TGG	+	tig0008210:2258-2277	Msa1346110:three_prime_UTR	45.0%
	GTCACGAGAGACAAAACGTT+GGG	+	tig0008210:2259-2278	Msa1346110:three_prime_UTR	45.0%
	CAAAACGTTGGGTGTGTATG+TGG	+	tig0008210:2270-2289	Msa1346110:three_prime_UTR	45.0%
	AACTGCATTTCGCATGTCTG+AGG	+	tig0008210:2531-2550	Msa1346110:three_prime_UTR	45.0%
	CAGAACCGTATATACGCAGA+AGG	+	tig0008210:2557-2576	Msa1346110:three_prime_UTR	45.0%
	ACAGCCCTTCTGCGTATATA+CGG	-	tig0008210:2565-2584	None:intergenic	45.0%
!	TGAGGCATTTGGAGAAAGGA+AGG	+	tig0008210:2584-2603	Msa1346110:three_prime_UTR	45.0%
!	GAGGCATTTGGAGAAAGGAA+GGG	+	tig0008210:2585-2604	Msa1346110:three_prime_UTR	45.0%
!!!	AGGGTTGTCATTTTTGCTGC+TGG	+	tig0008210:2604-2623	Msa1346110:three_prime_UTR	45.0%
	GCAGTGTCTGTGGTAAAGAA+TGG	-	tig0008210:2640-2659	None:intergenic	45.0%
!	TTCTGCACATCTAAGTGCTG+CGG	-	tig0008210:2662-2681	None:intergenic	45.0%
	AACTGTATCTGTCCTTGCCT+TGG	+	tig0008210:3156-3175	Msa1346110:intron	45.0%
	ACTACAACTGTTCCAAGGCA+AGG	-	tig0008210:3171-3190	None:intergenic	45.0%
	ATGGCCTTCTCTATGTTACC+TGG	-	tig0008210:3210-3229	None:intergenic	45.0%
	GCCATTAAAGGTGAGAGAGT+TGG	+	tig0008210:3225-3244	Msa1346110:three_prime_UTR	45.0%
	GCCAACTCTCTCACCTTTAA+TGG	-	tig0008210:3229-3248	None:intergenic	45.0%
	GAGAGAGTTGGCACTTTGAT+TGG	+	tig0008210:3237-3256	Msa1346110:three_prime_UTR	45.0%
	GAGAGTTGGCACTTTGATTG+GGG	+	tig0008210:3239-3258	Msa1346110:three_prime_UTR	45.0%
	GTTATGCAATCTTCCAGCTG+AGG	+	tig0008210:3338-3357	Msa1346110:three_prime_UTR	45.0%
	TATTTGCCATCCACGTGGTT+TGG	+	tig0008210:3477-3496	Msa1346110:three_prime_UTR	45.0%
!	ATGTAATGGAGCCACTACCA+GGG	-	tig0008210:3570-3589	None:intergenic	45.0%
!	AATGTAATGGAGCCACTACC+AGG	-	tig0008210:3571-3590	None:intergenic	45.0%
!!!	TTTTTTATATTTTTAAAACA+CGG	-	tig0008210:1190-1209	None:intergenic	5.0%
!!	CCTGGAATTGAAGGCATCAG+GGG	-	tig0008210:473-492	None:intergenic	50.0%
	AGTGCAAACGGAGACATGGA+TGG	-	tig0008210:605-624	None:intergenic	50.0%
	TGACAGTGCAAACGGAGACA+TGG	-	tig0008210:609-628	None:intergenic	50.0%
	CAACACCAGACTAACCCATG+TGG	-	tig0008210:994-1013	None:intergenic	50.0%
!	CTTGAGAGGAGCACAATCCA+AGG	-	tig0008210:1028-1047	None:intergenic	50.0%
	CTTGGATTGTGCTCCTCTCA+AGG	+	tig0008210:1026-1045	Msa1346110:intron	50.0%
	TAGGGCCCTAAGTAGACTGT+AGG	+	tig0008210:1126-1145	Msa1346110:intron	50.0%
!!	ATTGGTCCTCCCGGATTAGT+CGG	+	tig0008210:1149-1168	Msa1346110:intron	50.0%
	CGAAATTCAACTCCGGCTGT+TGG	+	tig0008210:1330-1349	Msa1346110:intron	50.0%
	TGTTGGCATGAGGACCTTGT+TGG	+	tig0008210:1347-1366	Msa1346110:intron	50.0%
	GTTGGCATGAGGACCTTGTT+GGG	+	tig0008210:1348-1367	Msa1346110:intron	50.0%
	TTGGCATGAGGACCTTGTTG+GGG	+	tig0008210:1349-1368	Msa1346110:intron	50.0%
	TGAAATCTGGGGGATCCCAA+AGG	-	tig0008210:1429-1448	None:intergenic	50.0%
	TAGTCACCTCAATGCCATGG+CGG	-	tig0008210:1659-1678	None:intergenic	50.0%
	GTGTAGTCACCTCAATGCCA+TGG	-	tig0008210:1662-1681	None:intergenic	50.0%
!	ATCTTTAGGGGAAGCTCTGC+CGG	+	tig0008210:1835-1854	Msa1346110:intron	50.0%
	CAGGTTGCACTAGTTGTTGG+TGG	+	tig0008210:1996-2015	Msa1346110:intron	50.0%
	GGTTGCACTAGTTGTTGGTG+GGG	+	tig0008210:1998-2017	Msa1346110:intron	50.0%
!	GTTGCACTAGTTGTTGGTGG+GGG	+	tig0008210:1999-2018	Msa1346110:CDS	50.0%
	ATATACGCAGAAGGGCTGTG+AGG	+	tig0008210:2566-2585	Msa1346110:three_prime_UTR	50.0%
!	GCTGTGAGGCATTTGGAGAA+AGG	+	tig0008210:2580-2599	Msa1346110:three_prime_UTR	50.0%
!!!	GTCATTTTTGCTGCTGGCAC+TGG	+	tig0008210:2610-2629	Msa1346110:three_prime_UTR	50.0%
	TATCAAGAAGCCGCGCTTGA+GGG	-	tig0008210:2955-2974	None:intergenic	50.0%
	TCCAGCTGAGGATGCCAAAA+TGG	+	tig0008210:3350-3369	Msa1346110:three_prime_UTR	50.0%
!!	TCCATTTTGGCATCCTCAGC+TGG	-	tig0008210:3354-3373	None:intergenic	50.0%
	AGCTGAGGATGCCAAAATGG+AGG	+	tig0008210:3353-3372	Msa1346110:three_prime_UTR	50.0%
	ATTAGGCCAAACCACGTGGA+TGG	-	tig0008210:3486-3505	None:intergenic	50.0%
	TGACTTCTCAACCCTGGTAG+TGG	+	tig0008210:3556-3575	Msa1346110:three_prime_UTR	50.0%
	GTTTGGCGGCAGCAGCATAA+TGG	+	tig0008210:285-304	Msa1346110:exon	55.0%
	CCCCTGATGCCTTCAATTCC+AGG	+	tig0008210:470-489	Msa1346110:CDS	55.0%
!!	GTTAGCGGAGAAGCACTTGC+TGG	+	tig0008210:674-693	Msa1346110:CDS	55.0%
!	GTGTTGTAGCCTTGGGACCT+TGG	+	tig0008210:1008-1027	Msa1346110:intron	55.0%
	GAGCACAATCCAAGGTCCCA+AGG	-	tig0008210:1020-1039	None:intergenic	55.0%
!!	GACTGTAGGATTGGTCCTCC+CGG	+	tig0008210:1140-1159	Msa1346110:intron	55.0%
	ACCTAGGGACCGACTAATCC+GGG	-	tig0008210:1161-1180	None:intergenic	55.0%
	GACCTAGGGACCGACTAATC+CGG	-	tig0008210:1162-1181	None:intergenic	55.0%
!!	GGATTAGTCGGTCCCTAGGT+CGG	+	tig0008210:1161-1180	Msa1346110:intron	55.0%
	AAGGTCCTCATGCCAACAGC+CGG	-	tig0008210:1345-1364	None:intergenic	55.0%
	TGGCATGAGGACCTTGTTGG+GGG	+	tig0008210:1350-1369	Msa1346110:intron	55.0%
	GGTTAGTGCTCTCCGAGACT+TGG	+	tig0008210:1391-1410	Msa1346110:intron	55.0%
!	AGCTGCCACTTCCCTTGCAA+TGG	-	tig0008210:1631-1650	None:intergenic	55.0%
	TGTAACCCGCCATGGCATTG+AGG	+	tig0008210:1650-1669	Msa1346110:CDS	55.0%
	AGTCACCTCAATGCCATGGC+GGG	-	tig0008210:1658-1677	None:intergenic	55.0%
!	CAGAAGGGCTGTGAGGCATT+TGG	+	tig0008210:2573-2592	Msa1346110:three_prime_UTR	55.0%
	CAAAGCGTAACCCTCAAGCG+CGG	+	tig0008210:2942-2961	Msa1346110:three_prime_UTR	55.0%
	GTATCAAGAAGCCGCGCTTG+AGG	-	tig0008210:2956-2975	None:intergenic	55.0%
	GCACTTTGATTGGGGCAACG+TGG	+	tig0008210:3247-3266	Msa1346110:three_prime_UTR	55.0%
!!	TCGGCCCACATGGGTTAGTC+TGG	+	tig0008210:986-1005	Msa1346110:intron	60.0%
	TAGGGACCGACTAATCCGGG+AGG	-	tig0008210:1158-1177	None:intergenic	60.0%
!!	TCCCGGATTAGTCGGTCCCT+AGG	+	tig0008210:1157-1176	Msa1346110:intron	60.0%
	CAACTCCGGCTGTTGGCATG+AGG	+	tig0008210:1337-1356	Msa1346110:intron	60.0%
	GGCATGAGGACCTTGTTGGG+GGG	+	tig0008210:1351-1370	Msa1346110:intron	60.0%
	GGTGGGGGTAACATCTTCCG+TGG	+	tig0008210:2014-2033	Msa1346110:CDS	60.0%
	ACATCTTCCGTGGAGCCTCG+TGG	+	tig0008210:2024-2043	Msa1346110:CDS	60.0%
	CATCTTCCGTGGAGCCTCGT+GGG	+	tig0008210:2025-2044	Msa1346110:CDS	60.0%
	ACCACTACTTCCAGCCCACG+AGG	-	tig0008210:2042-2061	None:intergenic	60.0%
!	AAGTGCTGCGGCAGTGTCTG+TGG	-	tig0008210:2650-2669	None:intergenic	60.0%
	CGCGCTTGAGGGTTACGCTT+TGG	-	tig0008210:2944-2963	None:intergenic	60.0%
	GTGGCAGCTGTAACCCGCCA+TGG	+	tig0008210:1642-1661	Msa1346110:CDS	65.0%
	TTCCAGCCCACGAGGCTCCA+CGG	-	tig0008210:2034-2053	None:intergenic	65.0%
!!	GCCTCGTGGGCTGGAAGTAG+TGG	+	tig0008210:2038-2057	Msa1346110:CDS	65.0%
	TTCCGTGGAGCCTCGTGGGC+TGG	+	tig0008210:2029-2048	Msa1346110:CDS	70.0%

Chromosome	Type	Strat	End	Strand	Name
tig0008210	gene	230	3643	230	ID=Msa1346110;Name=Msa1346110
tig0008210	mRNA	230	3643	230	ID=Msa1346110-mRNA-1;Parent=Msa1346110;Name=Msa1346110-mRNA-1;_AED=0.01;_eAED=0.01;_QI=74\|1\|1\|1\|1\|0.83\|6\|1225\|158
tig0008210	exon	230	491	230	ID=Msa1346110-mRNA-1:exon:5349;Parent=Msa1346110-mRNA-1
tig0008210	exon	586	724	586	ID=Msa1346110-mRNA-1:exon:5350;Parent=Msa1346110-mRNA-1
tig0008210	exon	1618	1671	1618	ID=Msa1346110-mRNA-1:exon:5351;Parent=Msa1346110-mRNA-1
tig0008210	exon	1999	2682	1999	ID=Msa1346110-mRNA-1:exon:5352;Parent=Msa1346110-mRNA-1
tig0008210	exon	2885	3061	2885	ID=Msa1346110-mRNA-1:exon:5353;Parent=Msa1346110-mRNA-1
tig0008210	exon	3184	3643	3184	ID=Msa1346110-mRNA-1:exon:5354;Parent=Msa1346110-mRNA-1
tig0008210	five_prime_UTR	230	303	230	ID=Msa1346110-mRNA-1:five_prime_utr;Parent=Msa1346110-mRNA-1
tig0008210	CDS	304	491	304	ID=Msa1346110-mRNA-1:cds;Parent=Msa1346110-mRNA-1
tig0008210	CDS	586	724	586	ID=Msa1346110-mRNA-1:cds;Parent=Msa1346110-mRNA-1
tig0008210	CDS	1618	1671	1618	ID=Msa1346110-mRNA-1:cds;Parent=Msa1346110-mRNA-1
tig0008210	CDS	1999	2094	1999	ID=Msa1346110-mRNA-1:cds;Parent=Msa1346110-mRNA-1
tig0008210	three_prime_UTR	2095	2682	2095	ID=Msa1346110-mRNA-1:three_prime_utr;Parent=Msa1346110-mRNA-1
tig0008210	three_prime_UTR	2885	3061	2885	ID=Msa1346110-mRNA-1:three_prime_utr;Parent=Msa1346110-mRNA-1
tig0008210	three_prime_UTR	3184	3643	3184	ID=Msa1346110-mRNA-1:three_prime_utr;Parent=Msa1346110-mRNA-1

Gene Sequence

>Msa1346110

ATGGCAGTTTCAATTCCTCTATTCTCCTCCACCTTATCTTCTTCTTCTTCTTCTTCTATTTCTCTTTCTTCATCTTCAAAACTTCACTCCCCTTCTCGCACTTCATTATTTCGTCGTAATTCAACTTCCTTCACTATTCGCTCTTCTTATTCCGGAAATGGTTCTTCCCCTGATGCCTTCAATTCCAGGAATTCTGAAATTATTCCATCCATGTCTCCGTTTGCACTGTCAATGAATGAATCTAGTAAGCCAAAATGGAGAAGGGTTTTGCTCAAAGTTAGCGGAGAAGCACTTGCTGGAGATCAAGCTCAGAATATTGACCCTAAGGTAACTATGTCCATTGCAAGGGAAGTGGCAGCTGTAACCCGCCATGGCATTGAGGTTGCACTAGTTGTTGGTGGGGGTAACATCTTCCGTGGAGCCTCGTGGGCTGGAAGTAGTGGTCTTGACCGCTCATCTGCTGATTATATTGGGTGA

Protein sequence

>Msa1346110

MAVSIPLFSSTLSSSSSSSISLSSSSKLHSPSRTSLFRRNSTSFTIRSSYSGNGSSPDAFNSRNSEIIPSMSPFALSMNESSKPKWRRVLLKVSGEALAGDQAQNIDPKVTMSIAREVAAVTRHGIEVALVVGGGNIFRGASWAGSSGLDRSSADYIG*