AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0236330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0236330 MtrunA17_Chr2g0286411 96.605 324 8 2 1 323 1 322 0.0 643
Msa0236330 MtrunA17_Chr4g0052751 79.464 112 23 0 212 323 12 123 3.07e-63 196
Msa0236330 MtrunA17_Chr4g0052771 59.854 137 52 2 48 183 54 188 1.28e-51 169
Msa0236330 MtrunA17_Chr8g0346791 84.483 58 8 1 154 210 19 76 8.01e-28 104
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0236330 AT2G39080.1 63.946 294 91 2 39 320 57 347 1.22e-133 384

Find 94 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTGATGGCTTTAGAGAAAT+TGG 0.165423 2_2:-9293880 None:intergenic
TATTTCATGTCATTTATTTA+TGG 0.177612 2_2:+9297761 Msa0236330:three_prime_UTR
TATGGTTATCATTTCTCTTT+TGG 0.190253 2_2:+9297779 Msa0236330:three_prime_UTR
ATCGTTGGTCCTGGTGTTCT+TGG 0.252463 2_2:+9294003 Msa0236330:CDS
CCTTATGATTGTAACGATAA+TGG 0.258705 2_2:+9295600 Msa0236330:CDS
TGGATTACCTTGGTGATCTT+AGG 0.305690 2_2:+9294478 Msa0236330:CDS
TCTTCTCCTTCTCTTTCAAT+TGG 0.307326 2_2:+9293964 Msa0236330:CDS
CTTTAGAGAAATTGGGGAAT+TGG 0.315540 2_2:-9293872 None:intergenic
TCATGAAGAGTTGGTTCAAT+TGG 0.321265 2_2:+9294374 Msa0236330:CDS
GTATTAGTCCTGCTTTGAAT+TGG 0.338500 2_2:+9294397 Msa0236330:CDS
TTTAGAGAAATTGGGGAATT+GGG 0.340909 2_2:-9293871 None:intergenic
TGGGCTCCCACCCAACTTCT+TGG 0.350973 2_2:-9297455 None:intergenic
TGCTCCTCCTTATCAATCAT+TGG 0.356100 2_2:+9294458 Msa0236330:CDS
AAAGTTGAAATTTACTTTGA+AGG 0.365545 2_2:+9297647 Msa0236330:three_prime_UTR
GTGAGATATTGAAATTCAAA+TGG 0.366331 2_2:-9293933 None:intergenic
ATCTTCATCTTTCTCTTCCA+TGG 0.372647 2_2:+9293906 Msa0236330:CDS
GAAAATATTGTGCTCGAGTT+TGG 0.372950 2_2:+9295876 Msa0236330:CDS
GAATGATTCATCTTTGTTCC+CGG 0.374922 2_2:+9297804 Msa0236330:three_prime_UTR
GGGAAACTTATGGTCAGATT+TGG 0.376255 2_2:-9294421 None:intergenic
GAAGAGAAAGATGAAGATAA+AGG 0.391771 2_2:-9293901 None:intergenic
GTCGTTTGGTCGCTCATCAA+TGG 0.392509 2_2:+9294025 Msa0236330:CDS
TGTTTGTTATTGATGGCATT+AGG 0.402344 2_2:+9293760 Msa0236330:exon
ATGAGCAAAGCTAGAGTACT+TGG 0.407139 2_2:-9297475 None:intergenic
GTGATGGCTTTAGAGAAATT+GGG 0.407211 2_2:-9293879 None:intergenic
TCCTGGTGTTCTTGGTCGTT+TGG 0.407798 2_2:+9294011 Msa0236330:CDS
CACCAGGACCAACGATTAGA+AGG 0.408443 2_2:-9293996 None:intergenic
CTCCTCCCAATTGGCACGAC+TGG 0.408761 2_2:-9295825 None:intergenic
GATACTCCAGTCGTGCCAAT+TGG 0.419650 2_2:+9295819 Msa0236330:CDS
CAATGACATAGGGAAACTTA+TGG 0.425090 2_2:-9294431 None:intergenic
GTGGTGGAGTTGAGAAGAAA+TGG 0.432736 2_2:-9293849 None:intergenic
CATGAAGAGTTGGTTCAATT+GGG 0.441809 2_2:+9294375 Msa0236330:CDS
GTTCTCGGGCTCCTCCCAAT+TGG 0.450558 2_2:-9295834 None:intergenic
ACTGAATCTCATACATTATG+AGG 0.452895 2_2:+9296105 Msa0236330:CDS
TCAGGCAGGCTGCAGAATGC+TGG 0.455175 2_2:+9295538 Msa0236330:intron
TGAGATATTGAAATTCAAAT+GGG 0.461645 2_2:-9293932 None:intergenic
TGGTGGAGTTGAGAAGAAAT+GGG 0.463518 2_2:-9293848 None:intergenic
TTTAGAAGGACATCAGTTCT+CGG 0.474447 2_2:-9295849 None:intergenic
TTAGAAGGACATCAGTTCTC+GGG 0.474461 2_2:-9295848 None:intergenic
GTGATAATCATCCTTTGTCC+AGG 0.478529 2_2:+9296330 Msa0236330:CDS
AAACGGTGTAAATGTGTTAG+TGG 0.480620 2_2:-9293820 None:intergenic
GCATGAAGAGAGTGTTGAAA+TGG 0.485200 2_2:-9293792 None:intergenic
ATGAGATTCAGTACGTGATC+AGG 0.489741 2_2:-9296094 None:intergenic
CACACTTACTATTTAGAGAA+GGG 0.494029 2_2:+9296055 Msa0236330:CDS
TATCAATCATTGGATTACCT+TGG 0.501321 2_2:+9294468 Msa0236330:CDS
ATTGAAAGAGAAGGAGAAGA+AGG 0.501906 2_2:-9293961 None:intergenic
CAAAGATCTCACTCAAAAGT+TGG 0.502049 2_2:-9297516 None:intergenic
ATACTCCAGTCGTGCCAATT+GGG 0.502069 2_2:+9295820 Msa0236330:CDS
CCATTATCGTTACAATCATA+AGG 0.503939 2_2:-9295600 None:intergenic
TACTGATCATCATGAAGAGT+TGG 0.507041 2_2:+9294365 Msa0236330:CDS
GAAATTGGGGAATTGGGTGG+TGG 0.511531 2_2:-9293865 None:intergenic
AAAGATGAAGATAAAGGTGA+TGG 0.514258 2_2:-9293895 None:intergenic
AGAGAAATTGGGGAATTGGG+TGG 0.519135 2_2:-9293868 None:intergenic
AGGTAATCCAATGATTGATA+AGG 0.521831 2_2:-9294465 None:intergenic
TGATGGCTTTAGAGAAATTG+GGG 0.526292 2_2:-9293878 None:intergenic
CTTCAAAATTGCAACGGAGA+GGG 0.536306 2_2:-9296276 None:intergenic
CAGGCTGCAGAATGCTGGAA+TGG 0.537544 2_2:+9295543 Msa0236330:CDS
GACCTTCTAATCGTTGGTCC+TGG 0.539275 2_2:+9293994 Msa0236330:CDS
AGGAGCACATACAATGACAT+AGG 0.541031 2_2:-9294442 None:intergenic
ATGGATCTAGTCGACAAAAG+TGG 0.544166 2_2:+9297193 Msa0236330:CDS
GTGAACAATGAACATTGGTA+AGG 0.544834 2_2:+9297669 Msa0236330:three_prime_UTR
AACTCGCCAAGAAGTTGGGT+GGG 0.553451 2_2:+9297449 Msa0236330:CDS
GCAGGAACTGATGATCCTCT+TGG 0.554847 2_2:+9297405 Msa0236330:intron
GAAATTCAAATGGGTAGCCA+TGG 0.559481 2_2:-9293923 None:intergenic
TTGTTTCTTCAAAATTGCAA+CGG 0.560832 2_2:-9296282 None:intergenic
ACCAAACGACCAAGAACACC+AGG 0.561950 2_2:-9294012 None:intergenic
GATTTGGTCCAATTCAAAGC+AGG 0.563850 2_2:-9294405 None:intergenic
GGTCGCTCATCAATGGCGGC+AGG 0.565178 2_2:+9294032 Msa0236330:CDS
ACACACTTACTATTTAGAGA+AGG 0.569345 2_2:+9296054 Msa0236330:CDS
AATATTGTGCTCGAGTTTGG+TGG 0.576963 2_2:+9295879 Msa0236330:CDS
CAACATGACCTTCTAATCGT+TGG 0.577258 2_2:+9293988 Msa0236330:CDS
TAATCCAATGATTGATAAGG+AGG 0.577326 2_2:-9294462 None:intergenic
TGGATCTAGTCGACAAAAGT+GGG 0.582143 2_2:+9297194 Msa0236330:CDS
TCTATTGAATCAGGAACATG+AGG 0.585010 2_2:+9294314 Msa0236330:intron
ACACTTACTATTTAGAGAAG+GGG 0.585739 2_2:+9296056 Msa0236330:CDS
TTGTTATTGATGGCATTAGG+AGG 0.586805 2_2:+9293763 Msa0236330:exon
TGAAGGTGAACAATGAACAT+TGG 0.587696 2_2:+9297664 Msa0236330:three_prime_UTR
GCAGAATGCTGGAATGGAGA+AGG 0.593499 2_2:+9295549 Msa0236330:CDS
TGTTGTCCAATTGAAAGAGA+AGG 0.599252 2_2:-9293970 None:intergenic
AAACTCGCCAAGAAGTTGGG+TGG 0.604194 2_2:+9297448 Msa0236330:CDS
GGAGCACATACAATGACATA+GGG 0.607743 2_2:-9294441 None:intergenic
GGTGGAGTTGAGAAGAAATG+GGG 0.613805 2_2:-9293847 None:intergenic
CTCCAGTCGTGCCAATTGGG+AGG 0.623505 2_2:+9295823 Msa0236330:CDS
TCTTCAAAATTGCAACGGAG+AGG 0.627129 2_2:-9296277 None:intergenic
TTGTTCAATCTCTTACCAAG+AGG 0.630106 2_2:-9297420 None:intergenic
CGATAATGGTTTATGCGATG+AGG 0.634674 2_2:+9295614 Msa0236330:CDS
TGAGCAAAGCTAGAGTACTT+GGG 0.639074 2_2:-9297474 None:intergenic
AAATCACCTAACCTGGACAA+AGG 0.653574 2_2:-9296341 None:intergenic
GGTGTAAATGTGTTAGTGGT+TGG 0.653759 2_2:-9293816 None:intergenic
GTTTGGTCGCTCATCAATGG+CGG 0.654822 2_2:+9294028 Msa0236330:CDS
GTGGAGTTGAGAAGAAATGG+GGG 0.662811 2_2:-9293846 None:intergenic
AAGTTGGTCATAGAGTCTCA+AGG 0.697220 2_2:-9297500 None:intergenic
CTATTGAATCAGGAACATGA+GGG 0.710683 2_2:+9294315 Msa0236330:intron
GTAAGGTATAATACTACACA+AGG 0.715708 2_2:+9297686 Msa0236330:three_prime_UTR
TTGCTCACCTAAGATCACCA+AGG 0.722733 2_2:-9294485 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTTCTAATATATTCAT+AGG + chr2_2:9294162-9294181 Msa0236330:intron 10.0%
!! TATATATTAAAATATAGACT+TGG - chr2_2:9294773-9294792 None:intergenic 10.0%
!!! TGATAAATATTTCATATTTT+AGG - chr2_2:9294868-9294887 None:intergenic 10.0%
!! ATTAAAACTTAAAAACTTAT+GGG - chr2_2:9296367-9296386 None:intergenic 10.0%
!! AATTAAAACTTAAAAACTTA+TGG - chr2_2:9296368-9296387 None:intergenic 10.0%
!!! TTTTAAGTTTTAATTTATGA+TGG + chr2_2:9296373-9296392 Msa0236330:intron 10.0%
!!! TCTTTTTTCATATGTATTAT+TGG + chr2_2:9295151-9295170 Msa0236330:intron 15.0%
!!! TTGTTTAAATTTGTTTCAAT+TGG + chr2_2:9295678-9295697 Msa0236330:intron 15.0%
!!! AATATTTTCTTATCTACTTA+TGG + chr2_2:9296180-9296199 Msa0236330:intron 15.0%
!! ATTTAAAAAAGCAAATAGAA+AGG - chr2_2:9297127-9297146 None:intergenic 15.0%
!!! TATTTCATGTCATTTATTTA+TGG + chr2_2:9297761-9297780 Msa0236330:three_prime_UTR 15.0%
!!! TTCATTTTGTTTGTTATTGA+TGG + chr2_2:9293753-9293772 Msa0236330:exon 20.0%
!! TGAGATATTGAAATTCAAAT+GGG - chr2_2:9293935-9293954 None:intergenic 20.0%
!!! TTTTAATTTTCCTGAAATCA+TGG + chr2_2:9294214-9294233 Msa0236330:intron 20.0%
!!! TTAATCCTTTAATTTGTAGT+TGG + chr2_2:9294528-9294547 Msa0236330:intron 20.0%
!! GATGATCAATTAAGTATAAA+GGG - chr2_2:9294651-9294670 None:intergenic 20.0%
!! TGATGATCAATTAAGTATAA+AGG - chr2_2:9294652-9294671 None:intergenic 20.0%
!! AACATGATATTATATTCTCA+TGG - chr2_2:9294832-9294851 None:intergenic 20.0%
!!! CATTCTTTGATGATAATATT+TGG + chr2_2:9295248-9295267 Msa0236330:intron 20.0%
!! ATCATGTAAAACATTAAGAT+TGG - chr2_2:9295313-9295332 None:intergenic 20.0%
!!! TATTTCTGTTATGTTTATAG+TGG + chr2_2:9295991-9296010 Msa0236330:intron 20.0%
!!! TTTTAATACAAAGAAGGTAA+AGG + chr2_2:9296028-9296047 Msa0236330:intron 20.0%
!! GTAAGGAATAAATTTCAAAA+GGG - chr2_2:9296417-9296436 None:intergenic 20.0%
!! AGTAAGGAATAAATTTCAAA+AGG - chr2_2:9296418-9296437 None:intergenic 20.0%
!! TTAACAAAAATACAGATGTT+TGG + chr2_2:9296550-9296569 Msa0236330:intron 20.0%
!!! ATCATTTTCAATTTAACTGT+TGG + chr2_2:9296995-9297014 Msa0236330:intron 20.0%
!! ATGTTTCATTAAATGTTGTT+TGG - chr2_2:9297296-9297315 None:intergenic 20.0%
!!! ATTTTATTTACAATGTCTCA+TGG - chr2_2:9297573-9297592 None:intergenic 20.0%
!! AAAGTTGAAATTTACTTTGA+AGG + chr2_2:9297647-9297666 Msa0236330:three_prime_UTR 20.0%
! GTGAGATATTGAAATTCAAA+TGG - chr2_2:9293936-9293955 None:intergenic 25.0%
! CTTATGATTGACTAATACAA+TGG - chr2_2:9295029-9295048 None:intergenic 25.0%
! ATGTAAAACATTAAGATTGG+AGG - chr2_2:9295310-9295329 None:intergenic 25.0%
!!! AGTAATTTAGGATTTTGCTT+AGG + chr2_2:9295455-9295474 Msa0236330:intron 25.0%
! TTATTCTAAACTTCTGTGTT+TGG + chr2_2:9295503-9295522 Msa0236330:intron 25.0%
! CAAATATTTGAAGAAAGAGA+GGG - chr2_2:9295661-9295680 None:intergenic 25.0%
! ACAAATATTTGAAGAAAGAG+AGG - chr2_2:9295662-9295681 None:intergenic 25.0%
!! TGTTTCAATTGGTTAATTTG+TGG + chr2_2:9295689-9295708 Msa0236330:intron 25.0%
! AGATTTACTTACTTCTATTC+AGG + chr2_2:9295797-9295816 Msa0236330:intron 25.0%
!! CAATATTTTCAGCTTTTAGA+AGG - chr2_2:9295866-9295885 None:intergenic 25.0%
! CTTCTTTGTATTAAAAGTCA+AGG - chr2_2:9296024-9296043 None:intergenic 25.0%
!! CTTGACTTTTAATACAAAGA+AGG + chr2_2:9296022-9296041 Msa0236330:intron 25.0%
!! TTGTTTCTTCAAAATTGCAA+CGG - chr2_2:9296285-9296304 None:intergenic 25.0%
!!! ATTTTGAAGAAACAATTTCG+TGG + chr2_2:9296290-9296309 Msa0236330:CDS 25.0%
! TTAAAATGTCGTATATGACA+TGG - chr2_2:9296534-9296553 None:intergenic 25.0%
!! TTTATCACTTCTAGTTATAC+CGG - chr2_2:9296614-9296633 None:intergenic 25.0%
!! GCAAATTTGTTTGGTTAAAT+TGG + chr2_2:9296877-9296896 Msa0236330:intron 25.0%
!! AATTTTGCCTTTGAACATTT+TGG + chr2_2:9297157-9297176 Msa0236330:intron 25.0%
!! TATGTTCTTTTCTTTTCTTG+AGG + chr2_2:9297331-9297350 Msa0236330:intron 25.0%
!! TATGGTTATCATTTCTCTTT+TGG + chr2_2:9297779-9297798 Msa0236330:three_prime_UTR 25.0%
!! TGTTTGTTATTGATGGCATT+AGG + chr2_2:9293760-9293779 Msa0236330:exon 30.0%
TTTAGAGAAATTGGGGAATT+GGG - chr2_2:9293874-9293893 None:intergenic 30.0%
AAAGATGAAGATAAAGGTGA+TGG - chr2_2:9293898-9293917 None:intergenic 30.0%
GAAGAGAAAGATGAAGATAA+AGG - chr2_2:9293904-9293923 None:intergenic 30.0%
!!! AGTTGTTGACACTTATTTTG+AGG + chr2_2:9294130-9294149 Msa0236330:intron 30.0%
! TTTTCCTGAAATCATGGAAT+TGG + chr2_2:9294220-9294239 Msa0236330:intron 30.0%
AAATCATGGAATTGGAATGT+TGG + chr2_2:9294228-9294247 Msa0236330:intron 30.0%
AATCATGGAATTGGAATGTT+GGG + chr2_2:9294229-9294248 Msa0236330:intron 30.0%
! ACATGTGTTTCTATTGAATC+AGG + chr2_2:9294305-9294324 Msa0236330:intron 30.0%
TAATCCAATGATTGATAAGG+AGG - chr2_2:9294465-9294484 None:intergenic 30.0%
AGGTAATCCAATGATTGATA+AGG - chr2_2:9294468-9294487 None:intergenic 30.0%
TATCAATCATTGGATTACCT+TGG + chr2_2:9294468-9294487 Msa0236330:CDS 30.0%
!! TCCTTTAATTTGTAGTTGGT+AGG + chr2_2:9294532-9294551 Msa0236330:intron 30.0%
TCCTACCAACTACAAATTAA+AGG - chr2_2:9294536-9294555 None:intergenic 30.0%
TATAAAGGGTTGTCAAATAG+CGG - chr2_2:9294637-9294656 None:intergenic 30.0%
!! TTCCTAGATTTCGTTTTTAC+AGG + chr2_2:9294950-9294969 Msa0236330:intron 30.0%
!! TCCTAGATTTCGTTTTTACA+GGG + chr2_2:9294951-9294970 Msa0236330:intron 30.0%
ACATATATGTATCTTAGACG+CGG + chr2_2:9295081-9295100 Msa0236330:intron 30.0%
TCACATAAGTCACAAAAGAA+AGG - chr2_2:9295108-9295127 None:intergenic 30.0%
!! TTCATTTTAGCGTATCTGTA+TGG + chr2_2:9295274-9295293 Msa0236330:intron 30.0%
!! TCATTTTAGCGTATCTGTAT+GGG + chr2_2:9295275-9295294 Msa0236330:intron 30.0%
TAACTGTGATATGAGAATTC+AGG - chr2_2:9295417-9295436 None:intergenic 30.0%
TCTAAACCTTGCAGTAATTT+AGG + chr2_2:9295443-9295462 Msa0236330:intron 30.0%
CAAAATCCTAAATTACTGCA+AGG - chr2_2:9295452-9295471 None:intergenic 30.0%
CCATTATCGTTACAATCATA+AGG - chr2_2:9295603-9295622 None:intergenic 30.0%
CCTTATGATTGTAACGATAA+TGG + chr2_2:9295600-9295619 Msa0236330:CDS 30.0%
!! ATTGGTTAATTTGTGGCATT+CGG + chr2_2:9295696-9295715 Msa0236330:intron 30.0%
TTGTGAAACTGAATATGATG+AGG - chr2_2:9295735-9295754 None:intergenic 30.0%
CATATTCAGTTTCACAATGT+AGG + chr2_2:9295738-9295757 Msa0236330:intron 30.0%
!! TTAATGGAACTTTGAAATCC+TGG - chr2_2:9295958-9295977 None:intergenic 30.0%
TCAAAGTTCCATTAATCTTG+TGG + chr2_2:9295963-9295982 Msa0236330:intron 30.0%
ATAACCAACCACAAGATTAA+TGG - chr2_2:9295974-9295993 None:intergenic 30.0%
ACACACTTACTATTTAGAGA+AGG + chr2_2:9296054-9296073 Msa0236330:CDS 30.0%
CACACTTACTATTTAGAGAA+GGG + chr2_2:9296055-9296074 Msa0236330:CDS 30.0%
ACACTTACTATTTAGAGAAG+GGG + chr2_2:9296056-9296075 Msa0236330:CDS 30.0%
ACTGAATCTCATACATTATG+AGG + chr2_2:9296105-9296124 Msa0236330:CDS 30.0%
! TTTATGATGGAGACCATAAT+TGG + chr2_2:9296386-9296405 Msa0236330:intron 30.0%
TGACATGGACAAAATTCATA+TGG - chr2_2:9296519-9296538 None:intergenic 30.0%
!!! TTAATTTTGACTCTGAACAC+CGG + chr2_2:9296592-9296611 Msa0236330:intron 30.0%
!! GACATGATTTTGAAAGGAAT+TGG - chr2_2:9296752-9296771 None:intergenic 30.0%
AGATATTTGAGTGTGTGTTT+GGG - chr2_2:9296782-9296801 None:intergenic 30.0%
AAAAAGTTCGAGAAATTCAC+AGG + chr2_2:9297226-9297245 Msa0236330:CDS 30.0%
!! AACTTTTGAGTGAGATCTTT+GGG + chr2_2:9297518-9297537 Msa0236330:three_prime_UTR 30.0%
GTAAGGTATAATACTACACA+AGG + chr2_2:9297686-9297705 Msa0236330:three_prime_UTR 30.0%
! TTGTTATTGATGGCATTAGG+AGG + chr2_2:9293763-9293782 Msa0236330:exon 35.0%
AAACGGTGTAAATGTGTTAG+TGG - chr2_2:9293823-9293842 None:intergenic 35.0%
! CTTTAGAGAAATTGGGGAAT+TGG - chr2_2:9293875-9293894 None:intergenic 35.0%
!! TGATGGCTTTAGAGAAATTG+GGG - chr2_2:9293881-9293900 None:intergenic 35.0%
!! GTGATGGCTTTAGAGAAATT+GGG - chr2_2:9293882-9293901 None:intergenic 35.0%
ATCTTCATCTTTCTCTTCCA+TGG + chr2_2:9293906-9293925 Msa0236330:CDS 35.0%
ATTGAAAGAGAAGGAGAAGA+AGG - chr2_2:9293964-9293983 None:intergenic 35.0%
TCTTCTCCTTCTCTTTCAAT+TGG + chr2_2:9293964-9293983 Msa0236330:CDS 35.0%
TGTTGTCCAATTGAAAGAGA+AGG - chr2_2:9293973-9293992 None:intergenic 35.0%
CATTCCAATTCCATGATTTC+AGG - chr2_2:9294227-9294246 None:intergenic 35.0%
TCTATTGAATCAGGAACATG+AGG + chr2_2:9294314-9294333 Msa0236330:intron 35.0%
CTATTGAATCAGGAACATGA+GGG + chr2_2:9294315-9294334 Msa0236330:intron 35.0%
TACTGATCATCATGAAGAGT+TGG + chr2_2:9294365-9294384 Msa0236330:CDS 35.0%
! TCATGAAGAGTTGGTTCAAT+TGG + chr2_2:9294374-9294393 Msa0236330:CDS 35.0%
! CATGAAGAGTTGGTTCAATT+GGG + chr2_2:9294375-9294394 Msa0236330:CDS 35.0%
! GTATTAGTCCTGCTTTGAAT+TGG + chr2_2:9294397-9294416 Msa0236330:CDS 35.0%
CAATGACATAGGGAAACTTA+TGG - chr2_2:9294434-9294453 None:intergenic 35.0%
! CATTGTCAATTGCTGATTGT+AGG + chr2_2:9294567-9294586 Msa0236330:intron 35.0%
AACGCAGCATTATACTATTG+TGG - chr2_2:9294714-9294733 None:intergenic 35.0%
!!! AGTTGGTTTTTTGAGGGTTT+TGG - chr2_2:9294909-9294928 None:intergenic 35.0%
!!! TACGTGAGTTGGTTTTTTGA+GGG - chr2_2:9294915-9294934 None:intergenic 35.0%
GAAATCTAGGAAGACATTAC+GGG - chr2_2:9294942-9294961 None:intergenic 35.0%
CGAAATCTAGGAAGACATTA+CGG - chr2_2:9294943-9294962 None:intergenic 35.0%
!! CCTAGATTTCGTTTTTACAG+GGG + chr2_2:9294952-9294971 Msa0236330:intron 35.0%
ATGCTTGCTCAAAATTCTCT+TGG + chr2_2:9295210-9295229 Msa0236330:intron 35.0%
TGCTTGCTCAAAATTCTCTT+GGG + chr2_2:9295211-9295230 Msa0236330:intron 35.0%
!! CATTTTAGCGTATCTGTATG+GGG + chr2_2:9295276-9295295 Msa0236330:intron 35.0%
TGTGATATGAGAATTCAGGA+GGG - chr2_2:9295413-9295432 None:intergenic 35.0%
TTCTAAACTTCTGTGTTTGG+AGG + chr2_2:9295506-9295525 Msa0236330:intron 35.0%
TCTAAACTTCTGTGTTTGGA+GGG + chr2_2:9295507-9295526 Msa0236330:intron 35.0%
TTTAGAAGGACATCAGTTCT+CGG - chr2_2:9295852-9295871 None:intergenic 35.0%
GAAAATATTGTGCTCGAGTT+TGG + chr2_2:9295876-9295895 Msa0236330:CDS 35.0%
AGTTCCATTAATCTTGTGGT+TGG + chr2_2:9295967-9295986 Msa0236330:intron 35.0%
GTTGAACATTTCGTCTAATG+TGG + chr2_2:9296229-9296248 Msa0236330:intron 35.0%
! TAATGTGGCTTTTCTAAACC+AGG + chr2_2:9296244-9296263 Msa0236330:intron 35.0%
! ATTTCGTGGACGAATTTTCT+TGG + chr2_2:9296304-9296323 Msa0236330:CDS 35.0%
! TTTCGTGGACGAATTTTCTT+GGG + chr2_2:9296305-9296324 Msa0236330:CDS 35.0%
CAAAAGGGAAGAACCAATTA+TGG - chr2_2:9296402-9296421 None:intergenic 35.0%
!! CAAGTAAGTTGATCTTCACT+CGG - chr2_2:9296466-9296485 None:intergenic 35.0%
GATCAACTTACTTGAAGAGT+TGG + chr2_2:9296472-9296491 Msa0236330:intron 35.0%
GATGTTTGGTTATAAGTGTC+AGG + chr2_2:9296564-9296583 Msa0236330:intron 35.0%
! TAAAGAGTAGCTTTTGTGAC+AGG + chr2_2:9296630-9296649 Msa0236330:intron 35.0%
TCAAACTCAGTTACCAAAGT+CGG + chr2_2:9296716-9296735 Msa0236330:intron 35.0%
! GAGCAAGACATGATTTTGAA+AGG - chr2_2:9296758-9296777 None:intergenic 35.0%
GAGATATTTGAGTGTGTGTT+TGG - chr2_2:9296783-9296802 None:intergenic 35.0%
TCATCACATGATTCAACAGT+TGG - chr2_2:9296849-9296868 None:intergenic 35.0%
! ATCATGCAGGCAAATTTGTT+TGG + chr2_2:9296868-9296887 Msa0236330:intron 35.0%
GGAATGATGCTTTCACAATT+AGG - chr2_2:9297369-9297388 None:intergenic 35.0%
CCTGCGAACAAAAATTACAA+AGG - chr2_2:9297390-9297409 None:intergenic 35.0%
! CCTTTGTAATTTTTGTTCGC+AGG + chr2_2:9297387-9297406 Msa0236330:intron 35.0%
TTGTTCAATCTCTTACCAAG+AGG - chr2_2:9297423-9297442 None:intergenic 35.0%
CAAAGATCTCACTCAAAAGT+TGG - chr2_2:9297519-9297538 None:intergenic 35.0%
!! CAACTTTTGAGTGAGATCTT+TGG + chr2_2:9297517-9297536 Msa0236330:three_prime_UTR 35.0%
!! ACTTTTGAGTGAGATCTTTG+GGG + chr2_2:9297519-9297538 Msa0236330:three_prime_UTR 35.0%
! AACTTTTGCTTCATGTAGAG+TGG - chr2_2:9297633-9297652 None:intergenic 35.0%
TGAAGGTGAACAATGAACAT+TGG + chr2_2:9297664-9297683 Msa0236330:three_prime_UTR 35.0%
GTGAACAATGAACATTGGTA+AGG + chr2_2:9297669-9297688 Msa0236330:three_prime_UTR 35.0%
!! GCATGAAGAGAGTGTTGAAA+TGG - chr2_2:9293795-9293814 None:intergenic 40.0%
GGTGTAAATGTGTTAGTGGT+TGG - chr2_2:9293819-9293838 None:intergenic 40.0%
AGAAGAAATGGGGGTTGAAA+CGG - chr2_2:9293840-9293859 None:intergenic 40.0%
TGGTGGAGTTGAGAAGAAAT+GGG - chr2_2:9293851-9293870 None:intergenic 40.0%
!! GGTGATGGCTTTAGAGAAAT+TGG - chr2_2:9293883-9293902 None:intergenic 40.0%
GAAATTCAAATGGGTAGCCA+TGG - chr2_2:9293926-9293945 None:intergenic 40.0%
CAACATGACCTTCTAATCGT+TGG + chr2_2:9293988-9294007 Msa0236330:CDS 40.0%
! CATGAGGGTAGTCAAGTTTT+TGG + chr2_2:9294330-9294349 Msa0236330:CDS 40.0%
! GATTTGGTCCAATTCAAAGC+AGG - chr2_2:9294408-9294427 None:intergenic 40.0%
GGGAAACTTATGGTCAGATT+TGG - chr2_2:9294424-9294443 None:intergenic 40.0%
GGAGCACATACAATGACATA+GGG - chr2_2:9294444-9294463 None:intergenic 40.0%
! AGGAGCACATACAATGACAT+AGG - chr2_2:9294445-9294464 None:intergenic 40.0%
TGCTCCTCCTTATCAATCAT+TGG + chr2_2:9294458-9294477 Msa0236330:CDS 40.0%
! TGGATTACCTTGGTGATCTT+AGG + chr2_2:9294478-9294497 Msa0236330:CDS 40.0%
TGATCTTAGGTGAGCAATCT+TGG + chr2_2:9294491-9294510 Msa0236330:intron 40.0%
GTGGCATTGTTGTCAAATAG+TGG - chr2_2:9294695-9294714 None:intergenic 40.0%
ATAATGCTGCGTTTGTGAGT+TGG + chr2_2:9294721-9294740 Msa0236330:intron 40.0%
TAATGCTGCGTTTGTGAGTT+GGG + chr2_2:9294722-9294741 Msa0236330:intron 40.0%
!!! TTTGTGAGTTGGGTTTTGGA+TGG + chr2_2:9294732-9294751 Msa0236330:intron 40.0%
!!! TTGTGAGTTGGGTTTTGGAT+GGG + chr2_2:9294733-9294752 Msa0236330:intron 40.0%
! TTTGGATGGGAAGATTTTCG+AGG + chr2_2:9294746-9294765 Msa0236330:intron 40.0%
! TTGGATGGGAAGATTTTCGA+GGG + chr2_2:9294747-9294766 Msa0236330:intron 40.0%
!!! GTACGTGAGTTGGTTTTTTG+AGG - chr2_2:9294916-9294935 None:intergenic 40.0%
CCCCTGTAAAAACGAAATCT+AGG - chr2_2:9294955-9294974 None:intergenic 40.0%
!! TTTCGTTTTTACAGGGGTGT+TGG + chr2_2:9294958-9294977 Msa0236330:intron 40.0%
AGGAGGGTAATCTAACAGAA+CGG - chr2_2:9295397-9295416 None:intergenic 40.0%
CTGTGATATGAGAATTCAGG+AGG - chr2_2:9295414-9295433 None:intergenic 40.0%
! CGATAATGGTTTATGCGATG+AGG + chr2_2:9295614-9295633 Msa0236330:CDS 40.0%
TTAGAAGGACATCAGTTCTC+GGG - chr2_2:9295851-9295870 None:intergenic 40.0%
AATATTGTGCTCGAGTTTGG+TGG + chr2_2:9295879-9295898 Msa0236330:CDS 40.0%
!!! GGCAGATTGTGGTTTTGAAA+AGG - chr2_2:9295937-9295956 None:intergenic 40.0%
TTTCAAAACCACAATCTGCC+AGG + chr2_2:9295937-9295956 Msa0236330:intron 40.0%
! TTTGAAATCCTGGCAGATTG+TGG - chr2_2:9295948-9295967 None:intergenic 40.0%
ATGAGATTCAGTACGTGATC+AGG - chr2_2:9296097-9296116 None:intergenic 40.0%
TATCACACCATCAGACATCA+GGG - chr2_2:9296145-9296164 None:intergenic 40.0%
TTATCACACCATCAGACATC+AGG - chr2_2:9296146-9296165 None:intergenic 40.0%
CTTCAAAATTGCAACGGAGA+GGG - chr2_2:9296279-9296298 None:intergenic 40.0%
TCTTCAAAATTGCAACGGAG+AGG - chr2_2:9296280-9296299 None:intergenic 40.0%
GTGATAATCATCCTTTGTCC+AGG + chr2_2:9296330-9296349 Msa0236330:CDS 40.0%
AATCATCCTTTGTCCAGGTT+AGG + chr2_2:9296335-9296354 Msa0236330:intron 40.0%
AAATCACCTAACCTGGACAA+AGG - chr2_2:9296344-9296363 None:intergenic 40.0%
TTATGGGAAATCACCTAACC+TGG - chr2_2:9296351-9296370 None:intergenic 40.0%
GTATGGTGATAGCTAGAGTA+AGG - chr2_2:9296434-9296453 None:intergenic 40.0%
GAATCATGTGATGATCATGC+AGG + chr2_2:9296855-9296874 Msa0236330:intron 40.0%
AAAGAAAGACACAACTCGAG+AGG - chr2_2:9297103-9297122 None:intergenic 40.0%
!! TTGCCTTTGAACATTTTGGC+AGG + chr2_2:9297161-9297180 Msa0236330:intron 40.0%
TTGCCTGCCAAAATGTTCAA+AGG - chr2_2:9297167-9297186 None:intergenic 40.0%
! TTTTGGCAGGCAAGAATTGA+TGG + chr2_2:9297174-9297193 Msa0236330:intron 40.0%
ATGGATCTAGTCGACAAAAG+TGG + chr2_2:9297193-9297212 Msa0236330:CDS 40.0%
TGGATCTAGTCGACAAAAGT+GGG + chr2_2:9297194-9297213 Msa0236330:CDS 40.0%
TCAAAAACTCGCCAAGAAGT+TGG + chr2_2:9297444-9297463 Msa0236330:CDS 40.0%
CAAAAACTCGCCAAGAAGTT+GGG + chr2_2:9297445-9297464 Msa0236330:CDS 40.0%
! TGAGCAAAGCTAGAGTACTT+GGG - chr2_2:9297477-9297496 None:intergenic 40.0%
! ATGAGCAAAGCTAGAGTACT+TGG - chr2_2:9297478-9297497 None:intergenic 40.0%
! AAGTTGGTCATAGAGTCTCA+AGG - chr2_2:9297503-9297522 None:intergenic 40.0%
GTGGAGTTGAGAAGAAATGG+GGG - chr2_2:9293849-9293868 None:intergenic 45.0%
GGTGGAGTTGAGAAGAAATG+GGG - chr2_2:9293850-9293869 None:intergenic 45.0%
! GTGGTGGAGTTGAGAAGAAA+TGG - chr2_2:9293852-9293871 None:intergenic 45.0%
AGAGAAATTGGGGAATTGGG+TGG - chr2_2:9293871-9293890 None:intergenic 45.0%
TTGCTCACCTAAGATCACCA+AGG - chr2_2:9294488-9294507 None:intergenic 45.0%
!! TGCGTTTGTGAGTTGGGTTT+TGG + chr2_2:9294728-9294747 Msa0236330:intron 45.0%
TGTTGGTGCAGCTGTTGTAA+GGG + chr2_2:9294975-9294994 Msa0236330:intron 45.0%
ATACTCCAGTCGTGCCAATT+GGG + chr2_2:9295820-9295839 Msa0236330:CDS 45.0%
TTGATTGCCCTGATGTCTGA+TGG + chr2_2:9296135-9296154 Msa0236330:intron 45.0%
!! ACTTGAAGAGTTGGCCTTCA+CGG + chr2_2:9296481-9296500 Msa0236330:intron 45.0%
! TGGTTGTGTAAAGCCGACTT+TGG - chr2_2:9296732-9296751 None:intergenic 45.0%
GAAATTGGGGAATTGGGTGG+TGG - chr2_2:9293868-9293887 None:intergenic 50.0%
GACCTTCTAATCGTTGGTCC+TGG + chr2_2:9293994-9294013 Msa0236330:CDS 50.0%
CACCAGGACCAACGATTAGA+AGG - chr2_2:9293999-9294018 None:intergenic 50.0%
ATCGTTGGTCCTGGTGTTCT+TGG + chr2_2:9294003-9294022 Msa0236330:CDS 50.0%
TCCTGGTGTTCTTGGTCGTT+TGG + chr2_2:9294011-9294030 Msa0236330:CDS 50.0%
ACCAAACGACCAAGAACACC+AGG - chr2_2:9294015-9294034 None:intergenic 50.0%
GTCGTTTGGTCGCTCATCAA+TGG + chr2_2:9294025-9294044 Msa0236330:CDS 50.0%
GTTTGGTCGCTCATCAATGG+CGG + chr2_2:9294028-9294047 Msa0236330:CDS 50.0%
TTACGGGTGTGTACGTGAGT+TGG - chr2_2:9294926-9294945 None:intergenic 50.0%
! GTGTTGGTGCAGCTGTTGTA+AGG + chr2_2:9294974-9294993 Msa0236330:intron 50.0%
GTTTGGAGGGTCAACCATTC+AGG + chr2_2:9295520-9295539 Msa0236330:intron 50.0%
GCAGAATGCTGGAATGGAGA+AGG + chr2_2:9295549-9295568 Msa0236330:CDS 50.0%
GATACTCCAGTCGTGCCAAT+TGG + chr2_2:9295819-9295838 Msa0236330:CDS 50.0%
! TGTGCTCGAGTTTGGTGGTT+CGG + chr2_2:9295884-9295903 Msa0236330:intron 50.0%
! GGTTCGGTTGTTAGACTGTC+TGG + chr2_2:9295900-9295919 Msa0236330:intron 50.0%
TCACTCGGCGTATGTACGTA+TGG - chr2_2:9296451-9296470 None:intergenic 50.0%
AAGACACAACTCGAGAGGTG+AGG - chr2_2:9297098-9297117 None:intergenic 50.0%
GCAGGAACTGATGATCCTCT+TGG + chr2_2:9297405-9297424 Msa0236330:intron 50.0%
AAACTCGCCAAGAAGTTGGG+TGG + chr2_2:9297448-9297467 Msa0236330:CDS 50.0%
AACTCGCCAAGAAGTTGGGT+GGG + chr2_2:9297449-9297468 Msa0236330:CDS 50.0%
CATTCTGCAGCCTGCCTGAA+TGG - chr2_2:9295537-9295556 None:intergenic 55.0%
CAGGCTGCAGAATGCTGGAA+TGG + chr2_2:9295543-9295562 Msa0236330:CDS 55.0%
GGAGGGTCAACCATTCAGGC+AGG + chr2_2:9295524-9295543 Msa0236330:intron 60.0%
TCAGGCAGGCTGCAGAATGC+TGG + chr2_2:9295538-9295557 Msa0236330:intron 60.0%
CTCCAGTCGTGCCAATTGGG+AGG + chr2_2:9295823-9295842 Msa0236330:CDS 60.0%
CTCCTCCCAATTGGCACGAC+TGG - chr2_2:9295828-9295847 None:intergenic 60.0%
GTTCTCGGGCTCCTCCCAAT+TGG - chr2_2:9295837-9295856 None:intergenic 60.0%
!! AGTTGGCCTTCACGGCGTGA+TGG + chr2_2:9296489-9296508 Msa0236330:intron 60.0%
!! GTTGGCCTTCACGGCGTGAT+GGG + chr2_2:9296490-9296509 Msa0236330:intron 60.0%
TGGGCTCCCACCCAACTTCT+TGG - chr2_2:9297458-9297477 None:intergenic 60.0%
GGTCGCTCATCAATGGCGGC+AGG + chr2_2:9294032-9294051 Msa0236330:CDS 65.0%
CGGAGAGGGAAGCTGCATCC+TGG - chr2_2:9296265-9296284 None:intergenic 65.0%
GGTCTCCCATCACGCCGTGA+AGG - chr2_2:9296498-9296517 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 9293749 9297826 9293749 ID=Msa0236330;Name=Msa0236330
chr2_2 mRNA 9293749 9297826 9293749 ID=Msa0236330-mRNA-1;Parent=Msa0236330;Name=Msa0236330-mRNA-1;_AED=0.07;_eAED=0.07;_QI=23|0.85|0.75|1|0.71|0.75|8|311|323
chr2_2 exon 9293749 9294053 9293749 ID=Msa0236330-mRNA-1:exon:4022;Parent=Msa0236330-mRNA-1
chr2_2 exon 9294327 9294499 9294327 ID=Msa0236330-mRNA-1:exon:4023;Parent=Msa0236330-mRNA-1
chr2_2 exon 9295542 9295635 9295542 ID=Msa0236330-mRNA-1:exon:4024;Parent=Msa0236330-mRNA-1
chr2_2 exon 9295819 9295900 9295819 ID=Msa0236330-mRNA-1:exon:4025;Parent=Msa0236330-mRNA-1
chr2_2 exon 9296044 9296126 9296044 ID=Msa0236330-mRNA-1:exon:4026;Parent=Msa0236330-mRNA-1
chr2_2 exon 9296266 9296351 9296266 ID=Msa0236330-mRNA-1:exon:4027;Parent=Msa0236330-mRNA-1
chr2_2 exon 9297183 9297247 9297183 ID=Msa0236330-mRNA-1:exon:4028;Parent=Msa0236330-mRNA-1
chr2_2 exon 9297409 9297826 9297409 ID=Msa0236330-mRNA-1:exon:4029;Parent=Msa0236330-mRNA-1
chr2_2 five_prime_UTR 9293749 9293771 9293749 ID=Msa0236330-mRNA-1:five_prime_utr;Parent=Msa0236330-mRNA-1
chr2_2 CDS 9293772 9294053 9293772 ID=Msa0236330-mRNA-1:cds;Parent=Msa0236330-mRNA-1
chr2_2 CDS 9294327 9294499 9294327 ID=Msa0236330-mRNA-1:cds;Parent=Msa0236330-mRNA-1
chr2_2 CDS 9295542 9295635 9295542 ID=Msa0236330-mRNA-1:cds;Parent=Msa0236330-mRNA-1
chr2_2 CDS 9295819 9295900 9295819 ID=Msa0236330-mRNA-1:cds;Parent=Msa0236330-mRNA-1
chr2_2 CDS 9296044 9296126 9296044 ID=Msa0236330-mRNA-1:cds;Parent=Msa0236330-mRNA-1
chr2_2 CDS 9296266 9296351 9296266 ID=Msa0236330-mRNA-1:cds;Parent=Msa0236330-mRNA-1
chr2_2 CDS 9297183 9297247 9297183 ID=Msa0236330-mRNA-1:cds;Parent=Msa0236330-mRNA-1
chr2_2 CDS 9297409 9297515 9297409 ID=Msa0236330-mRNA-1:cds;Parent=Msa0236330-mRNA-1
chr2_2 three_prime_UTR 9297516 9297826 9297516 ID=Msa0236330-mRNA-1:three_prime_utr;Parent=Msa0236330-mRNA-1
Gene Sequence

>Msa0236330

ATGGCATTAGGAGGAATTATCCATTTCAACACTCTCTTCATGCACCAACCACTAACACATTTACACCGTTTCAACCCCCATTTCTTCTCAACTCCACCACCCAATTCCCCAATTTCTCTAAAGCCATCACCTTTATCTTCATCTTTCTCTTCCATGGCTACCCATTTGAATTTCAATATCTCACAATTGCCTTCTTCTCCTTCTCTTTCAATTGGACAACATGACCTTCTAATCGTTGGTCCTGGTGTTCTTGGTCGTTTGGTCGCTCATCAATGGCGGCAGGAACATGAGGGTAGTCAAGTTTTTGGACAGACAATTACTACTGATCATCATGAAGAGTTGGTTCAATTGGGTATTAGTCCTGCTTTGAATTGGACCAAATCTGACCATAAGTTTCCCTATGTCATTGTATGTGCTCCTCCTTATCAATCATTGGATTACCTTGGTGATCTTAGGCAGGCTGCAGAATGCTGGAATGGAGAAGGTTCTTTTCTGTATACATCAAGTTCTGCTCCTTATGATTGTAACGATAATGGTTTATGCGATGAGGATACTCCAGTCGTGCCAATTGGGAGGAGCCCGAGAACTGATGTCCTTCTAAAAGCTGAAAATATTGTGCTCGAGTTTGGTGGTAAAGGTGCACACACTTACTATTTAGAGAAGGGGATCGTTGAATCTAGACCTGATCACGTACTGAATCTCATACATTATGAGGATGCAGCTTCCCTCTCCGTTGCAATTTTGAAGAAACAATTTCGTGGACGAATTTTCTTGGGTTGTGATAATCATCCTTTGTCCAGGCAAGAATTGATGGATCTAGTCGACAAAAGTGGGAAGTTCAGTAAAAAGTTCGAGAAATTCACAGGAACTGATGATCCTCTTGGTAAGAGATTGAACAACTCAAAAACTCGCCAAGAAGTTGGGTGGGAGCCCAAGTACTCTAGCTTTGCTCATTTCCTTGAGACTCTATGA

Protein sequence

>Msa0236330

MALGGIIHFNTLFMHQPLTHLHRFNPHFFSTPPPNSPISLKPSPLSSSFSSMATHLNFNISQLPSSPSLSIGQHDLLIVGPGVLGRLVAHQWRQEHEGSQVFGQTITTDHHEELVQLGISPALNWTKSDHKFPYVIVCAPPYQSLDYLGDLRQAAECWNGEGSFLYTSSSAPYDCNDNGLCDEDTPVVPIGRSPRTDVLLKAENIVLEFGGKGAHTYYLEKGIVESRPDHVLNLIHYEDAASLSVAILKKQFRGRIFLGCDNHPLSRQELMDLVDKSGKFSKKFEKFTGTDDPLGKRLNNSKTRQEVGWEPKYSSFAHFLETL*