Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31988.t1 | XP_013457004.1 | 94.7 | 304 | 15 | 1 | 1 | 304 | 1 | 303 | 4.80E-143 | 517.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31988.t1 | Q9ST69 | 66.8 | 295 | 78 | 4 | 30 | 304 | 14 | 308 | 1.8e-98 | 360.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31988.t1 | A0A072UYV0 | 94.7 | 304 | 15 | 1 | 1 | 304 | 1 | 303 | 3.5e-143 | 517.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene31988 | 0.835172 | 1.96E-56 | -1.69E-46 |
| MS.gene049173 | MS.gene31988 | 0.840441 | 8.68E-58 | -1.69E-46 |
| MS.gene049217 | MS.gene31988 | 0.886392 | 3.56E-72 | -1.69E-46 |
| MS.gene049222 | MS.gene31988 | 0.867985 | 9.14E-66 | -1.69E-46 |
| MS.gene049285 | MS.gene31988 | 0.893032 | 9.17E-75 | -1.69E-46 |
| MS.gene049320 | MS.gene31988 | 0.883517 | 4.20E-71 | -1.69E-46 |
| MS.gene049427 | MS.gene31988 | 0.847761 | 9.43E-60 | -1.69E-46 |
| MS.gene049609 | MS.gene31988 | 0.814068 | 1.86E-51 | -1.69E-46 |
| MS.gene049614 | MS.gene31988 | 0.817686 | 2.90E-52 | -1.69E-46 |
| MS.gene049615 | MS.gene31988 | 0.850228 | 1.94E-60 | -1.69E-46 |
| MS.gene049627 | MS.gene31988 | 0.839019 | 2.04E-57 | -1.69E-46 |
| MS.gene049828 | MS.gene31988 | 0.84003 | 1.11E-57 | -1.69E-46 |
| MS.gene05010 | MS.gene31988 | 0.821939 | 3.09E-53 | -1.69E-46 |
| MS.gene050163 | MS.gene31988 | 0.922635 | 7.60E-89 | -1.69E-46 |
| MS.gene050165 | MS.gene31988 | 0.920548 | 1.11E-87 | -1.69E-46 |
| MS.gene050333 | MS.gene31988 | 0.89913 | 2.69E-77 | -1.69E-46 |
| MS.gene050353 | MS.gene31988 | -0.831492 | 1.62E-55 | -1.69E-46 |
| MS.gene050432 | MS.gene31988 | 0.802355 | 5.84E-49 | -1.69E-46 |
| MS.gene050444 | MS.gene31988 | 0.809634 | 1.72E-50 | -1.69E-46 |
| MS.gene050504 | MS.gene31988 | 0.869793 | 2.37E-66 | -1.69E-46 |
| MS.gene050518 | MS.gene31988 | 0.900885 | 4.68E-78 | -1.69E-46 |
| MS.gene050538 | MS.gene31988 | 0.82158 | 3.74E-53 | -1.69E-46 |
| MS.gene050593 | MS.gene31988 | 0.802 | 6.90E-49 | -1.69E-46 |
| MS.gene050612 | MS.gene31988 | 0.876879 | 9.83E-69 | -1.69E-46 |
| MS.gene050675 | MS.gene31988 | 0.858327 | 8.89E-63 | -1.69E-46 |
| MS.gene050699 | MS.gene31988 | 0.851635 | 7.81E-61 | -1.69E-46 |
| MS.gene050767 | MS.gene31988 | 0.891469 | 3.86E-74 | -1.69E-46 |
| MS.gene050770 | MS.gene31988 | 0.892127 | 2.11E-74 | -1.69E-46 |
| MS.gene050772 | MS.gene31988 | 0.863084 | 3.20E-64 | -1.69E-46 |
| MS.gene05079 | MS.gene31988 | -0.803814 | 2.91E-49 | -1.69E-46 |
| MS.gene050876 | MS.gene31988 | 0.828662 | 7.94E-55 | -1.69E-46 |
| MS.gene05087 | MS.gene31988 | 0.804926 | 1.71E-49 | -1.69E-46 |
| MS.gene050986 | MS.gene31988 | 0.845011 | 5.30E-59 | -1.69E-46 |
| MS.gene05100 | MS.gene31988 | 0.883251 | 5.26E-71 | -1.69E-46 |
| MS.gene05114 | MS.gene31988 | -0.808571 | 2.90E-50 | -1.69E-46 |
| MS.gene051228 | MS.gene31988 | 0.872088 | 4.16E-67 | -1.69E-46 |
| MS.gene051317 | MS.gene31988 | 0.814542 | 1.46E-51 | -1.69E-46 |
| MS.gene051434 | MS.gene31988 | 0.868671 | 5.49E-66 | -1.69E-46 |
| MS.gene051551 | MS.gene31988 | 0.815676 | 8.18E-52 | -1.69E-46 |
| MS.gene051666 | MS.gene31988 | 0.839486 | 1.54E-57 | -1.69E-46 |
| MS.gene051694 | MS.gene31988 | 0.839104 | 1.93E-57 | -1.69E-46 |
| MS.gene051810 | MS.gene31988 | 0.895334 | 1.06E-75 | -1.69E-46 |
| MS.gene051858 | MS.gene31988 | 0.861258 | 1.16E-63 | -1.69E-46 |
| MS.gene051949 | MS.gene31988 | 0.878891 | 1.95E-69 | -1.69E-46 |
| MS.gene052271 | MS.gene31988 | 0.897788 | 1.00E-76 | -1.69E-46 |
| MS.gene052290 | MS.gene31988 | 0.83255 | 8.87E-56 | -1.69E-46 |
| MS.gene052379 | MS.gene31988 | 0.879745 | 9.70E-70 | -1.69E-46 |
| MS.gene052484 | MS.gene31988 | 0.809376 | 1.95E-50 | -1.69E-46 |
| MS.gene052605 | MS.gene31988 | 0.802501 | 5.45E-49 | -1.69E-46 |
| MS.gene052670 | MS.gene31988 | 0.831528 | 1.59E-55 | -1.69E-46 |
| MS.gene052870 | MS.gene31988 | 0.814524 | 1.47E-51 | -1.69E-46 |
| MS.gene052872 | MS.gene31988 | 0.817074 | 3.98E-52 | -1.69E-46 |
| MS.gene052916 | MS.gene31988 | 0.834504 | 2.89E-56 | -1.69E-46 |
| MS.gene053009 | MS.gene31988 | 0.868511 | 6.18E-66 | -1.69E-46 |
| MS.gene053104 | MS.gene31988 | 0.846811 | 1.72E-59 | -1.69E-46 |
| MS.gene053107 | MS.gene31988 | 0.848771 | 4.96E-60 | -1.69E-46 |
| MS.gene053207 | MS.gene31988 | 0.837802 | 4.19E-57 | -1.69E-46 |
| MS.gene053213 | MS.gene31988 | 0.870334 | 1.58E-66 | -1.69E-46 |
| MS.gene053284 | MS.gene31988 | 0.811508 | 6.76E-51 | -1.69E-46 |
| MS.gene053285 | MS.gene31988 | 0.81344 | 2.56E-51 | -1.69E-46 |
| MS.gene053286 | MS.gene31988 | 0.867775 | 1.07E-65 | -1.69E-46 |
| MS.gene053322 | MS.gene31988 | 0.895908 | 6.12E-76 | -1.69E-46 |
| MS.gene053384 | MS.gene31988 | 0.808357 | 3.22E-50 | -1.69E-46 |
| MS.gene053561 | MS.gene31988 | -0.802799 | 4.73E-49 | -1.69E-46 |
| MS.gene053574 | MS.gene31988 | 0.812152 | 4.90E-51 | -1.69E-46 |
| MS.gene053632 | MS.gene31988 | 0.835636 | 1.50E-56 | -1.69E-46 |
| MS.gene053916 | MS.gene31988 | 0.816992 | 4.15E-52 | -1.69E-46 |
| MS.gene054374 | MS.gene31988 | 0.832968 | 6.98E-56 | -1.69E-46 |
| MS.gene054376 | MS.gene31988 | 0.877394 | 6.51E-69 | -1.69E-46 |
| MS.gene054600 | MS.gene31988 | 0.860702 | 1.72E-63 | -1.69E-46 |
| MS.gene054616 | MS.gene31988 | -0.805326 | 1.41E-49 | -1.69E-46 |
| MS.gene054642 | MS.gene31988 | 0.907221 | 6.40E-81 | -1.69E-46 |
| MS.gene054802 | MS.gene31988 | 0.880787 | 4.12E-70 | -1.69E-46 |
| MS.gene054803 | MS.gene31988 | 0.880368 | 5.82E-70 | -1.69E-46 |
| MS.gene054804 | MS.gene31988 | 0.88263 | 8.87E-71 | -1.69E-46 |
| MS.gene054954 | MS.gene31988 | 0.85607 | 4.12E-62 | -1.69E-46 |
| MS.gene055154 | MS.gene31988 | -0.810802 | 9.62E-51 | -1.69E-46 |
| MS.gene055206 | MS.gene31988 | 0.822906 | 1.84E-53 | -1.69E-46 |
| MS.gene055212 | MS.gene31988 | 0.813206 | 2.88E-51 | -1.69E-46 |
| MS.gene055254 | MS.gene31988 | 0.834049 | 3.75E-56 | -1.69E-46 |
| MS.gene055362 | MS.gene31988 | 0.867989 | 9.11E-66 | -1.69E-46 |
| MS.gene055397 | MS.gene31988 | 0.905312 | 4.91E-80 | -1.69E-46 |
| MS.gene055499 | MS.gene31988 | 0.90526 | 5.18E-80 | -1.69E-46 |
| MS.gene055502 | MS.gene31988 | 0.855508 | 6.02E-62 | -1.69E-46 |
| MS.gene055577 | MS.gene31988 | 0.861068 | 1.33E-63 | -1.69E-46 |
| MS.gene055634 | MS.gene31988 | 0.85156 | 8.19E-61 | -1.69E-46 |
| MS.gene055636 | MS.gene31988 | 0.889159 | 3.11E-73 | -1.69E-46 |
| MS.gene055638 | MS.gene31988 | 0.896489 | 3.51E-76 | -1.69E-46 |
| MS.gene055647 | MS.gene31988 | 0.885043 | 1.14E-71 | -1.69E-46 |
| MS.gene055722 | MS.gene31988 | 0.838375 | 2.99E-57 | -1.69E-46 |
| MS.gene055748 | MS.gene31988 | 0.819046 | 1.43E-52 | -1.69E-46 |
| MS.gene055750 | MS.gene31988 | 0.802594 | 5.21E-49 | -1.69E-46 |
| MS.gene055751 | MS.gene31988 | 0.825871 | 3.70E-54 | -1.69E-46 |
| MS.gene05592 | MS.gene31988 | 0.87241 | 3.25E-67 | -1.69E-46 |
| MS.gene055941 | MS.gene31988 | 0.835852 | 1.32E-56 | -1.69E-46 |
| MS.gene055956 | MS.gene31988 | -0.839993 | 1.14E-57 | -1.69E-46 |
| MS.gene056083 | MS.gene31988 | 0.847184 | 1.36E-59 | -1.69E-46 |
| MS.gene056374 | MS.gene31988 | 0.883294 | 5.07E-71 | -1.69E-46 |
| MS.gene056409 | MS.gene31988 | 0.815045 | 1.13E-51 | -1.69E-46 |
| MS.gene056410 | MS.gene31988 | 0.805597 | 1.24E-49 | -1.69E-46 |
| MS.gene056449 | MS.gene31988 | 0.820165 | 7.92E-53 | -1.69E-46 |
| MS.gene056510 | MS.gene31988 | 0.823134 | 1.63E-53 | -1.69E-46 |
| MS.gene056549 | MS.gene31988 | 0.8552 | 7.40E-62 | -1.69E-46 |
| MS.gene056550 | MS.gene31988 | -0.806657 | 7.40E-50 | -1.69E-46 |
| MS.gene056657 | MS.gene31988 | 0.883765 | 3.40E-71 | -1.69E-46 |
| MS.gene056692 | MS.gene31988 | 0.847892 | 8.68E-60 | -1.69E-46 |
| MS.gene056897 | MS.gene31988 | 0.822951 | 1.80E-53 | -1.69E-46 |
| MS.gene057011 | MS.gene31988 | 0.841529 | 4.50E-58 | -1.69E-46 |
| MS.gene057129 | MS.gene31988 | 0.911148 | 8.43E-83 | -1.69E-46 |
| MS.gene057146 | MS.gene31988 | 0.808071 | 3.71E-50 | -1.69E-46 |
| MS.gene057246 | MS.gene31988 | 0.856332 | 3.45E-62 | -1.69E-46 |
| MS.gene057331 | MS.gene31988 | 0.863206 | 2.94E-64 | -1.69E-46 |
| MS.gene057416 | MS.gene31988 | 0.865674 | 4.98E-65 | -1.69E-46 |
| MS.gene057831 | MS.gene31988 | 0.823176 | 1.59E-53 | -1.69E-46 |
| MS.gene057926 | MS.gene31988 | 0.851353 | 9.38E-61 | -1.69E-46 |
| MS.gene057986 | MS.gene31988 | 0.811893 | 5.58E-51 | -1.69E-46 |
| MS.gene058019 | MS.gene31988 | 0.831851 | 1.32E-55 | -1.69E-46 |
| MS.gene058293 | MS.gene31988 | 0.831561 | 1.56E-55 | -1.69E-46 |
| MS.gene058323 | MS.gene31988 | 0.859809 | 3.20E-63 | -1.69E-46 |
| MS.gene058419 | MS.gene31988 | 0.87419 | 8.20E-68 | -1.69E-46 |
| MS.gene058544 | MS.gene31988 | 0.817805 | 2.73E-52 | -1.69E-46 |
| MS.gene058660 | MS.gene31988 | 0.822302 | 2.55E-53 | -1.69E-46 |
| MS.gene058723 | MS.gene31988 | 0.871197 | 8.21E-67 | -1.69E-46 |
| MS.gene058773 | MS.gene31988 | 0.88476 | 1.46E-71 | -1.69E-46 |
| MS.gene058903 | MS.gene31988 | 0.820293 | 7.40E-53 | -1.69E-46 |
| MS.gene058993 | MS.gene31988 | 0.800241 | 1.58E-48 | -1.69E-46 |
| MS.gene059022 | MS.gene31988 | 0.866152 | 3.51E-65 | -1.69E-46 |
| MS.gene059023 | MS.gene31988 | 0.825424 | 4.72E-54 | -1.69E-46 |
| MS.gene059029 | MS.gene31988 | 0.889431 | 2.44E-73 | -1.69E-46 |
| MS.gene059079 | MS.gene31988 | 0.850874 | 1.28E-60 | -1.69E-46 |
| MS.gene059102 | MS.gene31988 | -0.809793 | 1.59E-50 | -1.69E-46 |
| MS.gene05912 | MS.gene31988 | 0.803172 | 3.96E-49 | -1.69E-46 |
| MS.gene05913 | MS.gene31988 | 0.816623 | 5.03E-52 | -1.69E-46 |
| MS.gene05934 | MS.gene31988 | 0.840511 | 8.32E-58 | -1.69E-46 |
| MS.gene059536 | MS.gene31988 | 0.86889 | 4.67E-66 | -1.69E-46 |
| MS.gene059677 | MS.gene31988 | 0.889709 | 1.90E-73 | -1.69E-46 |
| MS.gene059718 | MS.gene31988 | 0.859973 | 2.85E-63 | -1.69E-46 |
| MS.gene059756 | MS.gene31988 | 0.812638 | 3.83E-51 | -1.69E-46 |
| MS.gene059801 | MS.gene31988 | 0.820323 | 7.29E-53 | -1.69E-46 |
| MS.gene059858 | MS.gene31988 | 0.831366 | 1.74E-55 | -1.69E-46 |
| MS.gene059865 | MS.gene31988 | 0.820293 | 7.41E-53 | -1.69E-46 |
| MS.gene059902 | MS.gene31988 | 0.862715 | 4.16E-64 | -1.69E-46 |
| MS.gene059960 | MS.gene31988 | 0.91862 | 1.24E-86 | -1.69E-46 |
| MS.gene060193 | MS.gene31988 | 0.881173 | 2.99E-70 | -1.69E-46 |
| MS.gene060337 | MS.gene31988 | -0.821111 | 4.80E-53 | -1.69E-46 |
| MS.gene060703 | MS.gene31988 | 0.8505 | 1.63E-60 | -1.69E-46 |
| MS.gene060728 | MS.gene31988 | 0.805507 | 1.29E-49 | -1.69E-46 |
| MS.gene060762 | MS.gene31988 | 0.848912 | 4.53E-60 | -1.69E-46 |
| MS.gene06077 | MS.gene31988 | 0.8192 | 1.32E-52 | -1.69E-46 |
| MS.gene060804 | MS.gene31988 | 0.845816 | 3.21E-59 | -1.69E-46 |
| MS.gene060818 | MS.gene31988 | 0.827243 | 1.74E-54 | -1.69E-46 |
| MS.gene06092 | MS.gene31988 | 0.840263 | 9.66E-58 | -1.69E-46 |
| MS.gene061041 | MS.gene31988 | 0.806145 | 9.48E-50 | -1.69E-46 |
| MS.gene061134 | MS.gene31988 | 0.83936 | 1.66E-57 | -1.69E-46 |
| MS.gene061150 | MS.gene31988 | 0.876985 | 9.03E-69 | -1.69E-46 |
| MS.gene061171 | MS.gene31988 | 0.833742 | 4.48E-56 | -1.69E-46 |
| MS.gene061200 | MS.gene31988 | 0.923292 | 3.22E-89 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31988.t1 | MTR_4g088615 | 96.711 | 304 | 9 | 1 | 1 | 304 | 1 | 303 | 0.0 | 595 |
| MS.gene31988.t1 | MTR_4g088615 | 95.812 | 191 | 8 | 0 | 31 | 221 | 30 | 220 | 5.08e-124 | 355 |
| MS.gene31988.t1 | MTR_8g105340 | 32.727 | 165 | 94 | 4 | 148 | 304 | 82 | 237 | 3.41e-16 | 77.4 |
| MS.gene31988.t1 | MTR_8g105340 | 32.727 | 165 | 94 | 4 | 148 | 304 | 91 | 246 | 3.83e-16 | 77.4 |
| MS.gene31988.t1 | MTR_1g032450 | 32.727 | 165 | 94 | 4 | 148 | 304 | 89 | 244 | 4.00e-16 | 77.4 |
| MS.gene31988.t1 | MTR_8g093680 | 30.065 | 153 | 107 | 0 | 144 | 296 | 341 | 493 | 1.01e-15 | 77.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31988.t1 | AT2G33800 | 70.943 | 265 | 69 | 3 | 45 | 304 | 42 | 303 | 1.35e-129 | 371 |
| MS.gene31988.t1 | AT1G64880 | 33.553 | 152 | 101 | 0 | 145 | 296 | 355 | 506 | 1.48e-18 | 86.3 |
| MS.gene31988.t1 | AT2G41840 | 31.515 | 165 | 96 | 3 | 148 | 304 | 96 | 251 | 5.79e-16 | 77.0 |
| MS.gene31988.t1 | AT1G58380 | 31.515 | 165 | 96 | 3 | 148 | 304 | 95 | 250 | 6.82e-16 | 76.6 |
| MS.gene31988.t1 | AT1G58684 | 31.515 | 165 | 96 | 3 | 148 | 304 | 95 | 250 | 9.41e-16 | 76.3 |
| MS.gene31988.t1 | AT1G58983 | 31.515 | 165 | 96 | 3 | 148 | 304 | 95 | 250 | 9.41e-16 | 76.3 |
| MS.gene31988.t1 | AT1G59359 | 31.515 | 165 | 96 | 3 | 148 | 304 | 95 | 250 | 9.41e-16 | 76.3 |
| MS.gene31988.t1 | AT3G57490 | 30.303 | 165 | 98 | 3 | 148 | 304 | 87 | 242 | 1.13e-15 | 75.9 |
Find 115 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCAGAGCTGATGGAGATTA+TGG | 0.212582 | 4.3:-24614299 | MS.gene31988:intron |
| GAGGGAAACAAATGAGGTTT+AGG | 0.287989 | 4.3:-24615789 | MS.gene31988:CDS |
| GAATGTGAGTTTGTGGGTTG+TGG | 0.290893 | 4.3:+24616188 | None:intergenic |
| GGAGAGAGAGAATGGGGTTT+TGG | 0.295722 | 4.3:+24616158 | None:intergenic |
| TTGAAGGGAAGGTCTTCTTC+TGG | 0.304660 | 4.3:+24616078 | None:intergenic |
| TTCGACTGGACCGTCGTCTA+TGG | 0.308957 | 4.3:+24616017 | None:intergenic |
| ATGAAGCCTTCCGGGATTTC+CGG | 0.310489 | 4.3:+24616051 | None:intergenic |
| GAAGGATACCGGGTTTGGTT+CGG | 0.313676 | 4.3:-24615890 | MS.gene31988:CDS |
| CGGGATTTCCGGTGGGTTGA+AGG | 0.323166 | 4.3:+24616062 | None:intergenic |
| AAGGATACCGGGTTTGGTTC+GGG | 0.336123 | 4.3:-24615889 | MS.gene31988:CDS |
| GAGAGAGTGGAGAGAGAGAA+TGG | 0.337375 | 4.3:+24616150 | None:intergenic |
| GGATCCCTATGGAAGAATTA+TGG | 0.351460 | 4.3:-24614073 | MS.gene31988:CDS |
| TGAAGGGAAGGTCTTCTTCT+GGG | 0.352947 | 4.3:+24616079 | None:intergenic |
| AATGTGAGTTTGTGGGTTGT+GGG | 0.361016 | 4.3:+24616189 | None:intergenic |
| CCTGGTACCGGAGTTATTGC+AGG | 0.364105 | 4.3:-24614245 | MS.gene31988:CDS |
| GTGGTGGAATGAAGCCTTCC+GGG | 0.382928 | 4.3:+24616043 | None:intergenic |
| AGAGAAACAAGAGGAGGAGG+AGG | 0.387274 | 4.3:+24616218 | None:intergenic |
| GCCGGTGTTGAGAATGCTTT+GGG | 0.389280 | 4.3:-24614194 | MS.gene31988:CDS |
| AGGGTAACTAAGGTTGTTAA+AGG | 0.390142 | 4.3:-24615811 | MS.gene31988:CDS |
| TTTAGGGCTATTGTTGTTGT+TGG | 0.390533 | 4.3:-24615772 | MS.gene31988:CDS |
| AGAGAGTGGAGAGAGAGAAT+GGG | 0.393555 | 4.3:+24616151 | None:intergenic |
| GCGAGGAAGGATACCGGGTT+TGG | 0.404414 | 4.3:-24615895 | MS.gene31988:CDS |
| CACTGCAGCTACAGTTGCTC+TGG | 0.409585 | 4.3:+24614136 | None:intergenic |
| GAGAGAGAAACAAGAGGAGG+AGG | 0.418200 | 4.3:+24616215 | None:intergenic |
| AGTGAGAATTGTTCTTGAAA+TGG | 0.420916 | 4.3:-24614216 | MS.gene31988:CDS |
| GGTGGTGGAATGAAGCCTTC+CGG | 0.420960 | 4.3:+24616042 | None:intergenic |
| ACAAGAGGAGGAGGAGGAAG+AGG | 0.428653 | 4.3:+24616224 | None:intergenic |
| GGAAAAGATAAGAGATGGGT+TGG | 0.430497 | 4.3:-24615857 | MS.gene31988:CDS |
| AGAGAATTGAGAGCGGAAGA+AGG | 0.444378 | 4.3:+24616267 | None:intergenic |
| AGGGAAACAAATGAGGTTTA+GGG | 0.444508 | 4.3:-24615788 | MS.gene31988:CDS |
| TGAGAGGGAATGTGAGTTTG+TGG | 0.452351 | 4.3:+24616181 | None:intergenic |
| ATGCTTAGACCCGCTTCTCC+TGG | 0.460234 | 4.3:-24614263 | MS.gene31988:CDS |
| ATTAGAATTAATTACCTATG+AGG | 0.463119 | 4.3:+24615622 | None:intergenic |
| ATTTCATCTTCGTCTTCGAC+TGG | 0.464676 | 4.3:+24616003 | None:intergenic |
| GGCCGGTGTTGAGAATGCTT+TGG | 0.464816 | 4.3:-24614195 | MS.gene31988:CDS |
| AAGAAGGAAAAGATAAGAGA+TGG | 0.465607 | 4.3:-24615862 | MS.gene31988:CDS |
| TTTCCGGTGGGTTGAAGGGA+AGG | 0.470346 | 4.3:+24616067 | None:intergenic |
| GTTTGGTTCGGGTGCGAAGA+AGG | 0.470604 | 4.3:-24615878 | MS.gene31988:CDS |
| TACAGTGGTGTTAGTGTGCT+TGG | 0.475022 | 4.3:-24615946 | MS.gene31988:CDS |
| GACGAGTTGGTGTTGGTGTT+GGG | 0.477749 | 4.3:-24615738 | MS.gene31988:CDS |
| AAGAGTTGTTCAAGTGAGGA+GGG | 0.483572 | 4.3:-24615830 | MS.gene31988:CDS |
| TCAAGTGAGGAGGGTAACTA+AGG | 0.484987 | 4.3:-24615821 | MS.gene31988:CDS |
| GAGAGGGAATGTGAGTTTGT+GGG | 0.488658 | 4.3:+24616182 | None:intergenic |
| GGACGAGTTGGTGTTGGTGT+TGG | 0.490278 | 4.3:-24615739 | MS.gene31988:CDS |
| GTTGTCTAATTCATCGGAGG+TGG | 0.507188 | 4.3:+24616107 | None:intergenic |
| GGGAAGGTCTTCTTCTGGGA+TGG | 0.507275 | 4.3:+24616083 | None:intergenic |
| GGAGGTGGGAATTGCTTTGA+CGG | 0.509753 | 4.3:+24616122 | None:intergenic |
| CTTCAACCCACCGGAAATCC+CGG | 0.509862 | 4.3:-24616061 | MS.gene31988:CDS |
| GCCGCATACGAAGAGCTATA+CGG | 0.511899 | 4.3:-24615976 | MS.gene31988:CDS |
| GAGAGTGGAGAGAGAGAATG+GGG | 0.512697 | 4.3:+24616152 | None:intergenic |
| AAAGAGTTGTTCAAGTGAGG+AGG | 0.515860 | 4.3:-24615831 | MS.gene31988:CDS |
| AAGACGGCGAGGAAGGATAC+CGG | 0.519140 | 4.3:-24615901 | MS.gene31988:CDS |
| TACTTCCATAATTCTTCCAT+AGG | 0.523427 | 4.3:+24614068 | None:intergenic |
| AGAAGGAAAAGATAAGAGAT+GGG | 0.524914 | 4.3:-24615861 | MS.gene31988:CDS |
| TTAAAGGAGGGAAACAAATG+AGG | 0.524916 | 4.3:-24615795 | MS.gene31988:CDS |
| AAGAAAGAGTTGTTCAAGTG+AGG | 0.526597 | 4.3:-24615834 | MS.gene31988:CDS |
| AAGCCTTCCGGGATTTCCGG+TGG | 0.529062 | 4.3:+24616054 | None:intergenic |
| ATGTGAGTTTGTGGGTTGTG+GGG | 0.529517 | 4.3:+24616190 | None:intergenic |
| GGGAATTGCTTTGACGGTGA+AGG | 0.529826 | 4.3:+24616128 | None:intergenic |
| GGGATTTCCGGTGGGTTGAA+GGG | 0.530494 | 4.3:+24616063 | None:intergenic |
| AAAAGTCAAGTACTTGGTCA+TGG | 0.539176 | 4.3:+24615645 | None:intergenic |
| GTAACTAAGGTTGTTAAAGG+AGG | 0.540545 | 4.3:-24615808 | MS.gene31988:CDS |
| AGAAATCTGCTATTAATGCT+AGG | 0.542732 | 4.3:-24615687 | MS.gene31988:CDS |
| GATGGTGTTGTCTAATTCAT+CGG | 0.546443 | 4.3:+24616101 | None:intergenic |
| CCGTCGTCTATGGAAGGTGG+TGG | 0.551471 | 4.3:+24616027 | None:intergenic |
| AATGCTTTGGGGAAACAACT+AGG | 0.554037 | 4.3:-24614182 | MS.gene31988:CDS |
| TGAGTTTGTGGGTTGTGGGG+AGG | 0.554542 | 4.3:+24616193 | None:intergenic |
| CTTCGCACCCGAACCAAACC+CGG | 0.555028 | 4.3:+24615882 | None:intergenic |
| ATGAGGAAAAGTCAAGTACT+TGG | 0.555126 | 4.3:+24615639 | None:intergenic |
| GATGGATAAGACGGCGAGGA+AGG | 0.559767 | 4.3:-24615908 | MS.gene31988:CDS |
| TGGAAATGATATAAATGTGA+TGG | 0.562907 | 4.3:-24615926 | MS.gene31988:CDS |
| CCTGCAATAACTCCGGTACC+AGG | 0.564590 | 4.3:+24614245 | None:intergenic |
| TGAGGAGCGTGGGATCCCTA+TGG | 0.565454 | 4.3:-24614084 | MS.gene31988:CDS |
| ACTTCCATAATTCTTCCATA+GGG | 0.566653 | 4.3:+24614069 | None:intergenic |
| TGGAGATTATGGAGCGTCAA+AGG | 0.569341 | 4.3:-24614288 | MS.gene31988:CDS |
| ACTCCGGTACCAGGAGAAGC+GGG | 0.569424 | 4.3:+24614254 | None:intergenic |
| TAACTAAGGTTGTTAAAGGA+GGG | 0.570136 | 4.3:-24615807 | MS.gene31988:CDS |
| AGTGAGGTCGCTGAGGAGCG+TGG | 0.573201 | 4.3:-24614095 | MS.gene31988:CDS |
| AGACCCGCTTCTCCTGGTAC+CGG | 0.574190 | 4.3:-24614257 | MS.gene31988:CDS |
| GGTACCGGAGTTATTGCAGG+TGG | 0.578070 | 4.3:-24614242 | MS.gene31988:CDS |
| AAAGTCAAGTACTTGGTCAT+GGG | 0.581671 | 4.3:+24615646 | None:intergenic |
| AACTCCGGTACCAGGAGAAG+CGG | 0.582114 | 4.3:+24614253 | None:intergenic |
| GTGAGGTCGCTGAGGAGCGT+GGG | 0.589602 | 4.3:-24614094 | MS.gene31988:CDS |
| AGAAGAGAGAGAATTGAGAG+CGG | 0.592656 | 4.3:+24616260 | None:intergenic |
| GGGGAGGAGAGAGAAACAAG+AGG | 0.595007 | 4.3:+24616209 | None:intergenic |
| CCCCAAAGCATTCTCAACAC+CGG | 0.599175 | 4.3:+24614193 | None:intergenic |
| AGAATTGTTCTTGAAATGGC+CGG | 0.602212 | 4.3:-24614212 | MS.gene31988:CDS |
| AGCCTTCCGGGATTTCCGGT+GGG | 0.602553 | 4.3:+24616055 | None:intergenic |
| AGACGGCGAGGAAGGATACC+GGG | 0.603653 | 4.3:-24615900 | MS.gene31988:CDS |
| AGGAGGAGGAGGAAGAGGAA+CGG | 0.604334 | 4.3:+24616229 | None:intergenic |
| ACTGGACCGTCGTCTATGGA+AGG | 0.605529 | 4.3:+24616021 | None:intergenic |
| TATAAATGTGATGGATAAGA+CGG | 0.605582 | 4.3:-24615917 | MS.gene31988:CDS |
| GAGGAGAGAGAAACAAGAGG+AGG | 0.611257 | 4.3:+24616212 | None:intergenic |
| AGACCTTCCCTTCAACCCAC+CGG | 0.615775 | 4.3:-24616070 | MS.gene31988:CDS |
| GCAGTACAGTGAGGTCGCTG+AGG | 0.616630 | 4.3:-24614102 | MS.gene31988:CDS |
| GTTGTTGTTGGTGATAAGCA+AGG | 0.618084 | 4.3:-24615760 | MS.gene31988:CDS |
| TTGTCTAATTCATCGGAGGT+GGG | 0.621444 | 4.3:+24616108 | None:intergenic |
| TGACCCACCTGCAATAACTC+CGG | 0.632629 | 4.3:+24614238 | None:intergenic |
| AAGCAAGGACGAGTTGGTGT+TGG | 0.635148 | 4.3:-24615745 | MS.gene31988:CDS |
| GGTGATAAGCAAGGACGAGT+TGG | 0.638537 | 4.3:-24615751 | MS.gene31988:CDS |
| TGTTGGTGTTGGGAAAGCTA+AGG | 0.639378 | 4.3:-24615728 | MS.gene31988:CDS |
| ACCGTATAGCTCTTCGTATG+CGG | 0.640746 | 4.3:+24615975 | None:intergenic |
| AACCCACCGGAAATCCCGGA+AGG | 0.651503 | 4.3:-24616057 | MS.gene31988:CDS |
| GGACCGTCGTCTATGGAAGG+TGG | 0.656325 | 4.3:+24616024 | None:intergenic |
| AATCTGCTATTAATGCTAGG+AGG | 0.657188 | 4.3:-24615684 | MS.gene31988:CDS |
| TTTGACGGTGAAGGAGAGAG+TGG | 0.659844 | 4.3:+24616137 | None:intergenic |
| CTATACGGTGTGGCGTACAG+TGG | 0.669321 | 4.3:-24615961 | MS.gene31988:CDS |
| GGTGTTGTCTAATTCATCGG+AGG | 0.675048 | 4.3:+24616104 | None:intergenic |
| GAAAATGAAGCAGTACAGTG+AGG | 0.690707 | 4.3:-24614111 | MS.gene31988:CDS |
| GTATAGCTCTTCGTATGCGG+CGG | 0.690747 | 4.3:+24615978 | None:intergenic |
| GTACCGGAGTTATTGCAGGT+GGG | 0.698051 | 4.3:-24614241 | MS.gene31988:CDS |
| ATGTGATGGATAAGACGGCG+AGG | 0.709872 | 4.3:-24615912 | MS.gene31988:CDS |
| CCACCACCTTCCATAGACGA+CGG | 0.718416 | 4.3:-24616027 | MS.gene31988:CDS |
| ATACGAAGAGCTATACGGTG+TGG | 0.743299 | 4.3:-24615971 | MS.gene31988:CDS |
| CCGGTGTTGAGAATGCTTTG+GGG | 0.778015 | 4.3:-24614193 | MS.gene31988:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTCAAATGACATTATAAT+TGG | + | chr4.3:24614845-24614864 | None:intergenic | 15.0% |
| !! | TATATACAACATAAAATTAG+TGG | + | chr4.3:24616020-24616039 | None:intergenic | 15.0% |
| !!! | AATTATAATGTCATTTGAAA+TGG | - | chr4.3:24614844-24614863 | MS.gene31988:intron | 15.0% |
| !! | AACAATTTCATTGTTCTATT+GGG | + | chr4.3:24615092-24615111 | None:intergenic | 20.0% |
| !! | AAGTTATGGATGAAAAAATT+AGG | - | chr4.3:24614935-24614954 | MS.gene31988:intron | 20.0% |
| !! | ATGAGAAACAAATATGAAAT+AGG | - | chr4.3:24615538-24615557 | MS.gene31988:intron | 20.0% |
| !! | ATTAGAATTAATTACCTATG+AGG | + | chr4.3:24614727-24614746 | None:intergenic | 20.0% |
| !! | ATTTGGATATTTGTGTATAT+AGG | - | chr4.3:24615237-24615256 | MS.gene31988:intron | 20.0% |
| !! | TTAGTCATTATTAGTATTGT+TGG | - | chr4.3:24614984-24615003 | MS.gene31988:intron | 20.0% |
| ! | AAAAATCCACCATATAAGAA+GGG | + | chr4.3:24615401-24615420 | None:intergenic | 25.0% |
| ! | AAAACAACAACTAGTAAGTA+GGG | + | chr4.3:24614801-24614820 | None:intergenic | 25.0% |
| ! | AAAACTTATTGACCAATGTT+GGG | - | chr4.3:24614867-24614886 | MS.gene31988:intron | 25.0% |
| ! | ACAATGTCATATTAATATGG+AGG | + | chr4.3:24615430-24615449 | None:intergenic | 25.0% |
| ! | CTCTAATACAAAGTGAATTA+TGG | + | chr4.3:24615213-24615232 | None:intergenic | 25.0% |
| ! | GAACAATTTCATTGTTCTAT+TGG | + | chr4.3:24615093-24615112 | None:intergenic | 25.0% |
| ! | TAGATTTCCTTAACTCAAAT+AGG | - | chr4.3:24615855-24615874 | MS.gene31988:CDS | 25.0% |
| ! | TCCATATTAATATGACATTG+TGG | - | chr4.3:24615429-24615448 | MS.gene31988:intron | 25.0% |
| ! | TGGAAATGATATAAATGTGA+TGG | - | chr4.3:24614420-24614439 | MS.gene31988:intron | 25.0% |
| ! | TTATGGAATAATACAGTTCA+AGG | + | chr4.3:24615196-24615215 | None:intergenic | 25.0% |
| ! | TTATGGATGAAAAAATTAGG+TGG | - | chr4.3:24614938-24614957 | MS.gene31988:intron | 25.0% |
| !! | ATATGAAATAGGTTGAAATG+TGG | - | chr4.3:24615549-24615568 | MS.gene31988:intron | 25.0% |
| !! | CATTTTTACATAGAACATAC+AGG | + | chr4.3:24615521-24615540 | None:intergenic | 25.0% |
| !!! | AGATGGAACTTTTATTTCAA+AGG | - | chr4.3:24615908-24615927 | MS.gene31988:CDS | 25.0% |
| !!! | GGTTTTGAATTTGAAAGTTA+TGG | - | chr4.3:24614921-24614940 | MS.gene31988:intron | 25.0% |
| !!! | TATAAATGTGATGGATAAGA+CGG | - | chr4.3:24614429-24614448 | MS.gene31988:intron | 25.0% |
| AACTCAATAGAAACAAGCAA+AGG | + | chr4.3:24615120-24615139 | None:intergenic | 30.0% | |
| AAGAAGGAAAAGATAAGAGA+TGG | - | chr4.3:24614484-24614503 | MS.gene31988:intron | 30.0% | |
| AATAGAAACAAGCAAAGGTA+AGG | + | chr4.3:24615115-24615134 | None:intergenic | 30.0% | |
| ACAATGTTAAGAACACAAGA+AGG | + | chr4.3:24615152-24615171 | None:intergenic | 30.0% | |
| ACTTCCATAATTCTTCCATA+GGG | + | chr4.3:24616280-24616299 | None:intergenic | 30.0% | |
| AGAAATCTGCTATTAATGCT+AGG | - | chr4.3:24614659-24614678 | MS.gene31988:intron | 30.0% | |
| AGAAGGAAAAGATAAGAGAT+GGG | - | chr4.3:24614485-24614504 | MS.gene31988:intron | 30.0% | |
| AGTGAGAATTGTTCTTGAAA+TGG | - | chr4.3:24616130-24616149 | MS.gene31988:CDS | 30.0% | |
| ATGAATGCCTAAGTAACTTA+TGG | - | chr4.3:24615800-24615819 | MS.gene31988:CDS | 30.0% | |
| CAAAAATCCACCATATAAGA+AGG | + | chr4.3:24615402-24615421 | None:intergenic | 30.0% | |
| CAAAACAACAACTAGTAAGT+AGG | + | chr4.3:24614802-24614821 | None:intergenic | 30.0% | |
| CTTTGTATTAGAGCTTCATT+TGG | - | chr4.3:24615220-24615239 | MS.gene31988:intron | 30.0% | |
| GAAAACTTATTGACCAATGT+TGG | - | chr4.3:24614866-24614885 | MS.gene31988:intron | 30.0% | |
| GCCACAATGTCATATTAATA+TGG | + | chr4.3:24615433-24615452 | None:intergenic | 30.0% | |
| TAACTAAGGTTGTTAAAGGA+GGG | - | chr4.3:24614539-24614558 | MS.gene31988:intron | 30.0% | |
| TAAGTGACCATAAGTTACTT+AGG | + | chr4.3:24615810-24615829 | None:intergenic | 30.0% | |
| TACTTCCATAATTCTTCCAT+AGG | + | chr4.3:24616281-24616300 | None:intergenic | 30.0% | |
| TGAGTTAAGGAAATCTAACA+GGG | + | chr4.3:24615852-24615871 | None:intergenic | 30.0% | |
| TTCATTGTTCTATTGGGAAT+AGG | + | chr4.3:24615086-24615105 | None:intergenic | 30.0% | |
| TTGAGTTAAGGAAATCTAAC+AGG | + | chr4.3:24615853-24615872 | None:intergenic | 30.0% | |
| ! | GAATATAAAGCATCTGATTG+AGG | - | chr4.3:24615668-24615687 | MS.gene31988:CDS | 30.0% |
| ! | TTAGCATCGTAAGATTTTAC+TGG | - | chr4.3:24615587-24615606 | MS.gene31988:intron | 30.0% |
| ! | TTCAGTTCCTATTTGAGTTA+AGG | + | chr4.3:24615865-24615884 | None:intergenic | 30.0% |
| !! | TTAGTATTGTTGGTGACATA+TGG | - | chr4.3:24614994-24615013 | MS.gene31988:intron | 30.0% |
| !!! | TTATATGGTGGATTTTTGTC+TGG | - | chr4.3:24615404-24615423 | MS.gene31988:intron | 30.0% |
| AAAAGTCAAGTACTTGGTCA+TGG | + | chr4.3:24614704-24614723 | None:intergenic | 35.0% | |
| AAAGGGAAAGGTTATTGTGA+AGG | - | chr4.3:24615033-24615052 | MS.gene31988:intron | 35.0% | |
| AAAGTCAAGTACTTGGTCAT+GGG | + | chr4.3:24614703-24614722 | None:intergenic | 35.0% | |
| AAGAAAGAGTTGTTCAAGTG+AGG | - | chr4.3:24614512-24614531 | MS.gene31988:intron | 35.0% | |
| AAGGGAAAGGTTATTGTGAA+GGG | - | chr4.3:24615034-24615053 | MS.gene31988:intron | 35.0% | |
| AATCTGCTATTAATGCTAGG+AGG | - | chr4.3:24614662-24614681 | MS.gene31988:intron | 35.0% | |
| AGAATTGTTCTTGAAATGGC+CGG | - | chr4.3:24616134-24616153 | MS.gene31988:CDS | 35.0% | |
| AGATGCTTTATATTCAGCTC+TGG | + | chr4.3:24615663-24615682 | None:intergenic | 35.0% | |
| AGGGAAACAAATGAGGTTTA+GGG | - | chr4.3:24614558-24614577 | MS.gene31988:intron | 35.0% | |
| AGGGTAACTAAGGTTGTTAA+AGG | - | chr4.3:24614535-24614554 | MS.gene31988:intron | 35.0% | |
| ATAGTCGAAAGTAAAGGGAA+AGG | - | chr4.3:24615021-24615040 | MS.gene31988:intron | 35.0% | |
| ATGAGGAAAAGTCAAGTACT+TGG | + | chr4.3:24614710-24614729 | None:intergenic | 35.0% | |
| CAATTTGACAATGTGAGACA+TGG | + | chr4.3:24615265-24615284 | None:intergenic | 35.0% | |
| CTAACAGGGAACATCTTAAT+AGG | + | chr4.3:24615838-24615857 | None:intergenic | 35.0% | |
| CTTACGATGCTAATAGCATA+TGG | + | chr4.3:24615580-24615599 | None:intergenic | 35.0% | |
| GCATGATAGTCGAAAGTAAA+GGG | - | chr4.3:24615016-24615035 | MS.gene31988:intron | 35.0% | |
| GTAACTAAGGTTGTTAAAGG+AGG | - | chr4.3:24614538-24614557 | MS.gene31988:intron | 35.0% | |
| TCCATCAAATGCTCAAATGA+AGG | + | chr4.3:24615613-24615632 | None:intergenic | 35.0% | |
| TGCGATAAGCATTCACATAT+GGG | + | chr4.3:24615761-24615780 | None:intergenic | 35.0% | |
| TTAAAGGAGGGAAACAAATG+AGG | - | chr4.3:24614551-24614570 | MS.gene31988:intron | 35.0% | |
| ! | AGTACTTGACTTTTCCTCAT+AGG | - | chr4.3:24614710-24614729 | MS.gene31988:intron | 35.0% |
| ! | TAATGTTTTTCCAGAGCTGA+TGG | - | chr4.3:24616038-24616057 | MS.gene31988:CDS | 35.0% |
| ! | TTTAGGGCTATTGTTGTTGT+TGG | - | chr4.3:24614574-24614593 | MS.gene31988:intron | 35.0% |
| !! | GATGGTGTTGTCTAATTCAT+CGG | + | chr4.3:24614248-24614267 | None:intergenic | 35.0% |
| AAAGAGTTGTTCAAGTGAGG+AGG | - | chr4.3:24614515-24614534 | MS.gene31988:intron | 40.0% | |
| AAGAGTTGTTCAAGTGAGGA+GGG | - | chr4.3:24614516-24614535 | MS.gene31988:intron | 40.0% | |
| AATGCTTATCGCAGCTGAAA+GGG | - | chr4.3:24615768-24615787 | MS.gene31988:CDS | 40.0% | |
| AGAAGAGAGAGAATTGAGAG+CGG | + | chr4.3:24614089-24614108 | None:intergenic | 40.0% | |
| AGGGAAAGGTTATTGTGAAG+GGG | - | chr4.3:24615035-24615054 | MS.gene31988:intron | 40.0% | |
| ATTTCATCTTCGTCTTCGAC+TGG | + | chr4.3:24614346-24614365 | None:intergenic | 40.0% | |
| CAACAACTAGTAAGTAGGGT+CGG | + | chr4.3:24614797-24614816 | None:intergenic | 40.0% | |
| CAACGCAGATTCCACTATAT+AGG | + | chr4.3:24615455-24615474 | None:intergenic | 40.0% | |
| CATCTGATTGAGGTTGTAGT+TGG | - | chr4.3:24615678-24615697 | MS.gene31988:CDS | 40.0% | |
| CTGCGATAAGCATTCACATA+TGG | + | chr4.3:24615762-24615781 | None:intergenic | 40.0% | |
| CTTATTGACCAATGTTGGGT+TGG | - | chr4.3:24614871-24614890 | MS.gene31988:intron | 40.0% | |
| GAAAATGAAGCAGTACAGTG+AGG | - | chr4.3:24616235-24616254 | MS.gene31988:CDS | 40.0% | |
| GAGGGAAACAAATGAGGTTT+AGG | - | chr4.3:24614557-24614576 | MS.gene31988:intron | 40.0% | |
| GCCTTCATTTGAGCATTTGA+TGG | - | chr4.3:24615609-24615628 | MS.gene31988:intron | 40.0% | |
| GGAAAAGATAAGAGATGGGT+TGG | - | chr4.3:24614489-24614508 | MS.gene31988:intron | 40.0% | |
| GGATCCCTATGGAAGAATTA+TGG | - | chr4.3:24616273-24616292 | MS.gene31988:CDS | 40.0% | |
| GGCATGATAGTCGAAAGTAA+AGG | - | chr4.3:24615015-24615034 | MS.gene31988:intron | 40.0% | |
| GTCATGACATAATGCAATGC+TGG | + | chr4.3:24615288-24615307 | None:intergenic | 40.0% | |
| TATTGTGAAGGGGAAATCCT+TGG | - | chr4.3:24615045-24615064 | MS.gene31988:intron | 40.0% | |
| TCGGCTACACAGATCAAATT+AGG | + | chr4.3:24614778-24614797 | None:intergenic | 40.0% | |
| TGACATTGTGGCCTATATAG+TGG | - | chr4.3:24615441-24615460 | MS.gene31988:intron | 40.0% | |
| TTCTAGCATCTTAGAACACG+AGG | + | chr4.3:24615963-24615982 | None:intergenic | 40.0% | |
| TTGTCTAATTCATCGGAGGT+GGG | + | chr4.3:24614241-24614260 | None:intergenic | 40.0% | |
| ! | AATGTGAGTTTGTGGGTTGT+GGG | + | chr4.3:24614160-24614179 | None:intergenic | 40.0% |
| ! | AGGTCACACACAAAGTATCA+AGG | + | chr4.3:24615176-24615195 | None:intergenic | 40.0% |
| ! | ATATAGTGGAATCTGCGTTG+TGG | - | chr4.3:24615455-24615474 | MS.gene31988:intron | 40.0% |
| !! | AATGCTTTGGGGAAACAACT+AGG | - | chr4.3:24616164-24616183 | MS.gene31988:CDS | 40.0% |
| !! | ACCATATAAGAAGGGCATTG+CGG | + | chr4.3:24615393-24615412 | None:intergenic | 40.0% |
| !! | GTTGTTGTTGGTGATAAGCA+AGG | - | chr4.3:24614586-24614605 | MS.gene31988:intron | 40.0% |
| AACACGTATGCAGCGATCTA+TGG | + | chr4.3:24615733-24615752 | None:intergenic | 45.0% | |
| ACCGTATAGCTCTTCGTATG+CGG | + | chr4.3:24614374-24614393 | None:intergenic | 45.0% | |
| AGAGAATTGAGAGCGGAAGA+AGG | + | chr4.3:24614082-24614101 | None:intergenic | 45.0% | |
| AGAGAGTGGAGAGAGAGAAT+GGG | + | chr4.3:24614198-24614217 | None:intergenic | 45.0% | |
| AGTCTCTTCTTGCTGAGAGA+TGG | - | chr4.3:24615891-24615910 | MS.gene31988:CDS | 45.0% | |
| ATACGAAGAGCTATACGGTG+TGG | - | chr4.3:24614375-24614394 | MS.gene31988:intron | 45.0% | |
| GAATGCTTATCGCAGCTGAA+AGG | - | chr4.3:24615767-24615786 | MS.gene31988:CDS | 45.0% | |
| GAGAGGGAATGTGAGTTTGT+GGG | + | chr4.3:24614167-24614186 | None:intergenic | 45.0% | |
| GCAATGCCCTTCTTATATGG+TGG | - | chr4.3:24615392-24615411 | MS.gene31988:intron | 45.0% | |
| GGAGAAAGAATTCTCCACCA+AGG | + | chr4.3:24615065-24615084 | None:intergenic | 45.0% | |
| GTATGCAGCGATCTATGGAA+GGG | + | chr4.3:24615728-24615747 | None:intergenic | 45.0% | |
| GTCATGACAGATTCTGTGCT+AGG | - | chr4.3:24615300-24615319 | MS.gene31988:intron | 45.0% | |
| GTTGTCTAATTCATCGGAGG+TGG | + | chr4.3:24614242-24614261 | None:intergenic | 45.0% | |
| TAGATCGCTGCATACGTGTT+TGG | - | chr4.3:24615733-24615752 | MS.gene31988:CDS | 45.0% | |
| TCAAGTGAGGAGGGTAACTA+AGG | - | chr4.3:24614525-24614544 | MS.gene31988:intron | 45.0% | |
| TCCAGAGCTGATGGAGATTA+TGG | - | chr4.3:24616047-24616066 | MS.gene31988:CDS | 45.0% | |
| TCCATAATCTCCATCAGCTC+TGG | + | chr4.3:24616051-24616070 | None:intergenic | 45.0% | |
| TGAAGGGAAGGTCTTCTTCT+GGG | + | chr4.3:24614270-24614289 | None:intergenic | 45.0% | |
| TGAGAGGGAATGTGAGTTTG+TGG | + | chr4.3:24614168-24614187 | None:intergenic | 45.0% | |
| TGTTTCCAACTTTCCGCTGT+AGG | - | chr4.3:24615367-24615386 | MS.gene31988:intron | 45.0% | |
| TTGAAGGGAAGGTCTTCTTC+TGG | + | chr4.3:24614271-24614290 | None:intergenic | 45.0% | |
| ! | ATGTGAGTTTGTGGGTTGTG+GGG | + | chr4.3:24614159-24614178 | None:intergenic | 45.0% |
| ! | GAATGTGAGTTTGTGGGTTG+TGG | + | chr4.3:24614161-24614180 | None:intergenic | 45.0% |
| ! | GGTGTTGTCTAATTCATCGG+AGG | + | chr4.3:24614245-24614264 | None:intergenic | 45.0% |
| ! | TACAGTGGTGTTAGTGTGCT+TGG | - | chr4.3:24614400-24614419 | MS.gene31988:intron | 45.0% |
| ! | TGGAGATTATGGAGCGTCAA+AGG | - | chr4.3:24616058-24616077 | MS.gene31988:CDS | 45.0% |
| !! | AGAATGGGGTTTTGGTGAGA+GGG | + | chr4.3:24614183-24614202 | None:intergenic | 45.0% |
| !! | TGTTGGTGTTGGGAAAGCTA+AGG | - | chr4.3:24614618-24614637 | MS.gene31988:intron | 45.0% |
| AGAGAAACAAGAGGAGGAGG+AGG | + | chr4.3:24614131-24614150 | None:intergenic | 50.0% | |
| ATGAAGCCTTCCGGGATTTC+CGG | + | chr4.3:24614298-24614317 | None:intergenic | 50.0% | |
| CGTATGCAGCGATCTATGGA+AGG | + | chr4.3:24615729-24615748 | None:intergenic | 50.0% | |
| GAGAGAGAAACAAGAGGAGG+AGG | + | chr4.3:24614134-24614153 | None:intergenic | 50.0% | |
| GAGAGAGTGGAGAGAGAGAA+TGG | + | chr4.3:24614199-24614218 | None:intergenic | 50.0% | |
| GAGAGTGGAGAGAGAGAATG+GGG | + | chr4.3:24614197-24614216 | None:intergenic | 50.0% | |
| GAGGAGAGAGAAACAAGAGG+AGG | + | chr4.3:24614137-24614156 | None:intergenic | 50.0% | |
| GCCGCAATGCCCTTCTTATA+TGG | - | chr4.3:24615389-24615408 | MS.gene31988:intron | 50.0% | |
| GCCGCATACGAAGAGCTATA+CGG | - | chr4.3:24614370-24614389 | MS.gene31988:intron | 50.0% | |
| GGAGGTGGGAATTGCTTTGA+CGG | + | chr4.3:24614227-24614246 | None:intergenic | 50.0% | |
| GGGAATTGCTTTGACGGTGA+AGG | + | chr4.3:24614221-24614240 | None:intergenic | 50.0% | |
| GGTGATAAGCAAGGACGAGT+TGG | - | chr4.3:24614595-24614614 | MS.gene31988:intron | 50.0% | |
| GTACCGGAGTTATTGCAGGT+GGG | - | chr4.3:24616105-24616124 | MS.gene31988:CDS | 50.0% | |
| GTATAGCTCTTCGTATGCGG+CGG | + | chr4.3:24614371-24614390 | None:intergenic | 50.0% | |
| TGACCCACCTGCAATAACTC+CGG | + | chr4.3:24616111-24616130 | None:intergenic | 50.0% | |
| TGGAACGGGACTCTGATGTA+AGG | - | chr4.3:24614900-24614919 | MS.gene31988:intron | 50.0% | |
| TGTGAAGGGGAAATCCTTGG+TGG | - | chr4.3:24615048-24615067 | MS.gene31988:intron | 50.0% | |
| TTTGACGGTGAAGGAGAGAG+TGG | + | chr4.3:24614212-24614231 | None:intergenic | 50.0% | |
| ! | AAGGATACCGGGTTTGGTTC+GGG | - | chr4.3:24614457-24614476 | MS.gene31988:intron | 50.0% |
| ! | ATTCAGCTCTGGTATCCCTC+AGG | + | chr4.3:24615652-24615671 | None:intergenic | 50.0% |
| ! | CCCCAAAGCATTCTCAACAC+CGG | + | chr4.3:24616156-24616175 | None:intergenic | 50.0% |
| ! | CCGGTGTTGAGAATGCTTTG+GGG | - | chr4.3:24616153-24616172 | MS.gene31988:CDS | 50.0% |
| ! | GAAGGATACCGGGTTTGGTT+CGG | - | chr4.3:24614456-24614475 | MS.gene31988:intron | 50.0% |
| ! | GCCGGTGTTGAGAATGCTTT+GGG | - | chr4.3:24616152-24616171 | MS.gene31988:CDS | 50.0% |
| ! | GGAGAGAGAGAATGGGGTTT+TGG | + | chr4.3:24614191-24614210 | None:intergenic | 50.0% |
| ! | TTCAGCTCTGGTATCCCTCA+GGG | + | chr4.3:24615651-24615670 | None:intergenic | 50.0% |
| !! | AAGCAAGGACGAGTTGGTGT+TGG | - | chr4.3:24614601-24614620 | MS.gene31988:intron | 50.0% |
| !! | ATGTGATGGATAAGACGGCG+AGG | - | chr4.3:24614434-24614453 | MS.gene31988:intron | 50.0% |
| !! | GACGAGTTGGTGTTGGTGTT+GGG | - | chr4.3:24614608-24614627 | MS.gene31988:intron | 50.0% |
| !! | GAGAATGGGGTTTTGGTGAG+AGG | + | chr4.3:24614184-24614203 | None:intergenic | 50.0% |
| AACTCCGGTACCAGGAGAAG+CGG | + | chr4.3:24616096-24616115 | None:intergenic | 55.0% | |
| AAGACGGCGAGGAAGGATAC+CGG | - | chr4.3:24614445-24614464 | MS.gene31988:intron | 55.0% | |
| AAGATAGTCGCTGCTGCCTG+TGG | + | chr4.3:24615328-24615347 | None:intergenic | 55.0% | |
| ACAAGAGGAGGAGGAGGAAG+AGG | + | chr4.3:24614125-24614144 | None:intergenic | 55.0% | |
| ACTGGACCGTCGTCTATGGA+AGG | + | chr4.3:24614328-24614347 | None:intergenic | 55.0% | |
| AGACCTTCCCTTCAACCCAC+CGG | - | chr4.3:24614276-24614295 | MS.gene31988:CDS | 55.0% | |
| AGGAGGAGGAGGAAGAGGAA+CGG | + | chr4.3:24614120-24614139 | None:intergenic | 55.0% | |
| ATGCTTAGACCCGCTTCTCC+TGG | - | chr4.3:24616083-24616102 | MS.gene31988:CDS | 55.0% | |
| CACTCGGACCAACCCAACAT+TGG | + | chr4.3:24614882-24614901 | None:intergenic | 55.0% | |
| CACTGCAGCTACAGTTGCTC+TGG | + | chr4.3:24616213-24616232 | None:intergenic | 55.0% | |
| CATCAGAGTCCCGTTCCACT+CGG | + | chr4.3:24614898-24614917 | None:intergenic | 55.0% | |
| CCACCACCTTCCATAGACGA+CGG | - | chr4.3:24614319-24614338 | MS.gene31988:intron | 55.0% | |
| CCTGCAATAACTCCGGTACC+AGG | + | chr4.3:24616104-24616123 | None:intergenic | 55.0% | |
| CTATACGGTGTGGCGTACAG+TGG | - | chr4.3:24614385-24614404 | MS.gene31988:intron | 55.0% | |
| CTGGTATCCCTCAGGGAGAA+GGG | + | chr4.3:24615644-24615663 | None:intergenic | 55.0% | |
| CTTCAACCCACCGGAAATCC+CGG | - | chr4.3:24614285-24614304 | MS.gene31988:CDS | 55.0% | |
| GATGGATAAGACGGCGAGGA+AGG | - | chr4.3:24614438-24614457 | MS.gene31988:intron | 55.0% | |
| GGGGAGGAGAGAGAAACAAG+AGG | + | chr4.3:24614140-24614159 | None:intergenic | 55.0% | |
| TCTGGTATCCCTCAGGGAGA+AGG | + | chr4.3:24615645-24615664 | None:intergenic | 55.0% | |
| TGAAGTCCCCTTCTCCCTGA+GGG | - | chr4.3:24615634-24615653 | MS.gene31988:intron | 55.0% | |
| TGGTATCCCTCAGGGAGAAG+GGG | + | chr4.3:24615643-24615662 | None:intergenic | 55.0% | |
| TTCGACTGGACCGTCGTCTA+TGG | + | chr4.3:24614332-24614351 | None:intergenic | 55.0% | |
| TTGAAGTCCCCTTCTCCCTG+AGG | - | chr4.3:24615633-24615652 | MS.gene31988:intron | 55.0% | |
| ! | CCTGGTACCGGAGTTATTGC+AGG | - | chr4.3:24616101-24616120 | MS.gene31988:CDS | 55.0% |
| ! | GATTCTGTGCTAGGTGCCAC+AGG | - | chr4.3:24615309-24615328 | MS.gene31988:intron | 55.0% |
| ! | GGCCGGTGTTGAGAATGCTT+TGG | - | chr4.3:24616151-24616170 | MS.gene31988:CDS | 55.0% |
| ! | GGGAAGGTCTTCTTCTGGGA+TGG | + | chr4.3:24614266-24614285 | None:intergenic | 55.0% |
| ! | GGTACCGGAGTTATTGCAGG+TGG | - | chr4.3:24616104-24616123 | MS.gene31988:CDS | 55.0% |
| ! | GTGGTGGAATGAAGCCTTCC+GGG | + | chr4.3:24614306-24614325 | None:intergenic | 55.0% |
| ! | TGAGTTTGTGGGTTGTGGGG+AGG | + | chr4.3:24614156-24614175 | None:intergenic | 55.0% |
| !! | CAATGTTGGGTTGGTCCGAG+TGG | - | chr4.3:24614880-24614899 | MS.gene31988:intron | 55.0% |
| !! | GGACGAGTTGGTGTTGGTGT+TGG | - | chr4.3:24614607-24614626 | MS.gene31988:intron | 55.0% |
| !! | GGGATTTCCGGTGGGTTGAA+GGG | + | chr4.3:24614286-24614305 | None:intergenic | 55.0% |
| !! | GGTGGTGGAATGAAGCCTTC+CGG | + | chr4.3:24614307-24614326 | None:intergenic | 55.0% |
| !! | GTTTGGTTCGGGTGCGAAGA+AGG | - | chr4.3:24614468-24614487 | MS.gene31988:intron | 55.0% |
| !! | TTGGGTTGGTCCGAGTGGAA+CGG | - | chr4.3:24614885-24614904 | MS.gene31988:intron | 55.0% |
| !! | TTTCCGGTGGGTTGAAGGGA+AGG | + | chr4.3:24614282-24614301 | None:intergenic | 55.0% |
| AACCCACCGGAAATCCCGGA+AGG | - | chr4.3:24614289-24614308 | MS.gene31988:CDS | 60.0% | |
| AAGCCTTCCGGGATTTCCGG+TGG | + | chr4.3:24614295-24614314 | None:intergenic | 60.0% | |
| ACTCCGGTACCAGGAGAAGC+GGG | + | chr4.3:24616095-24616114 | None:intergenic | 60.0% | |
| AGACCCGCTTCTCCTGGTAC+CGG | - | chr4.3:24616089-24616108 | MS.gene31988:CDS | 60.0% | |
| AGACGGCGAGGAAGGATACC+GGG | - | chr4.3:24614446-24614465 | MS.gene31988:intron | 60.0% | |
| AGCCTTCCGGGATTTCCGGT+GGG | + | chr4.3:24614294-24614313 | None:intergenic | 60.0% | |
| CCGTCGTCTATGGAAGGTGG+TGG | + | chr4.3:24614322-24614341 | None:intergenic | 60.0% | |
| CTTCGCACCCGAACCAAACC+CGG | + | chr4.3:24614467-24614486 | None:intergenic | 60.0% | |
| GCAGTACAGTGAGGTCGCTG+AGG | - | chr4.3:24616244-24616263 | MS.gene31988:CDS | 60.0% | |
| GCGAGGAAGGATACCGGGTT+TGG | - | chr4.3:24614451-24614470 | MS.gene31988:intron | 60.0% | |
| GGACCGTCGTCTATGGAAGG+TGG | + | chr4.3:24614325-24614344 | None:intergenic | 60.0% | |
| TGCGGCCTACAGCGGAAAGT+TGG | + | chr4.3:24615375-24615394 | None:intergenic | 60.0% | |
| ! | TGAGGAGCGTGGGATCCCTA+TGG | - | chr4.3:24616262-24616281 | MS.gene31988:CDS | 60.0% |
| !! | AAGGGCATTGCGGCCTACAG+CGG | + | chr4.3:24615383-24615402 | None:intergenic | 60.0% |
| !! | CGGGATTTCCGGTGGGTTGA+AGG | + | chr4.3:24614287-24614306 | None:intergenic | 60.0% |
| !! | TGGGTTGGTCCGAGTGGAAC+GGG | - | chr4.3:24614886-24614905 | MS.gene31988:intron | 60.0% |
| AGTGAGGTCGCTGAGGAGCG+TGG | - | chr4.3:24616251-24616270 | MS.gene31988:CDS | 65.0% | |
| ! | GTGAGGTCGCTGAGGAGCGT+GGG | - | chr4.3:24616252-24616271 | MS.gene31988:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 24614067 | 24616301 | 24614067 | ID=MS.gene31988 |
| chr4.3 | mRNA | 24614067 | 24616301 | 24614067 | ID=MS.gene31988.t1;Parent=MS.gene31988 |
| chr4.3 | exon | 24615637 | 24616301 | 24615637 | ID=MS.gene31988.t1.exon1;Parent=MS.gene31988.t1 |
| chr4.3 | CDS | 24615637 | 24616301 | 24615637 | ID=cds.MS.gene31988.t1;Parent=MS.gene31988.t1 |
| chr4.3 | exon | 24614067 | 24614316 | 24614067 | ID=MS.gene31988.t1.exon2;Parent=MS.gene31988.t1 |
| chr4.3 | CDS | 24614067 | 24614316 | 24614067 | ID=cds.MS.gene31988.t1;Parent=MS.gene31988.t1 |
| Gene Sequence |
| Protein sequence |
