Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41583.t1 | XP_013460371.2 | 86.7 | 452 | 48 | 2 | 1 | 452 | 1 | 440 | 5.40E-218 | 766.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41583.t1 | Q8GYW8 | 37.9 | 475 | 268 | 12 | 1 | 467 | 1 | 456 | 8.5e-71 | 269.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41583.t1 | A0A072UX90 | 86.9 | 451 | 47 | 2 | 1 | 451 | 1 | 439 | 5.0e-218 | 766.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050586 | MS.gene41583 | 0.806241 | 9.05E-50 | -1.69E-46 |
MS.gene053074 | MS.gene41583 | 0.837046 | 6.55E-57 | -1.69E-46 |
MS.gene054184 | MS.gene41583 | 0.818619 | 1.78E-52 | -1.69E-46 |
MS.gene054185 | MS.gene41583 | 0.825397 | 4.79E-54 | -1.69E-46 |
MS.gene057754 | MS.gene41583 | 0.820543 | 6.49E-53 | -1.69E-46 |
MS.gene058168 | MS.gene41583 | 0.805117 | 1.56E-49 | -1.69E-46 |
MS.gene059124 | MS.gene41583 | 0.851873 | 6.68E-61 | -1.69E-46 |
MS.gene059421 | MS.gene41583 | 0.805912 | 1.06E-49 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41583.t1 | MTR_3g465950 | 86.918 | 451 | 47 | 2 | 1 | 451 | 1 | 439 | 0.0 | 788 |
MS.gene41583.t1 | MTR_3g465930 | 78.981 | 471 | 95 | 3 | 1 | 470 | 1 | 468 | 0.0 | 766 |
MS.gene41583.t1 | MTR_3g465910 | 79.698 | 463 | 89 | 3 | 1 | 463 | 1 | 458 | 0.0 | 758 |
MS.gene41583.t1 | MTR_3g465870 | 81.277 | 470 | 47 | 3 | 1 | 470 | 1 | 429 | 0.0 | 754 |
MS.gene41583.t1 | MTR_3g465880 | 70.675 | 474 | 126 | 7 | 1 | 467 | 1 | 468 | 0.0 | 674 |
MS.gene41583.t1 | MTR_3g465980 | 69.593 | 467 | 134 | 4 | 1 | 466 | 1 | 460 | 0.0 | 659 |
MS.gene41583.t1 | MTR_3g465990 | 68.094 | 467 | 141 | 4 | 1 | 466 | 1 | 460 | 0.0 | 650 |
MS.gene41583.t1 | MTR_6g053810 | 58.478 | 460 | 181 | 6 | 9 | 463 | 8 | 462 | 0.0 | 523 |
MS.gene41583.t1 | MTR_4g055170 | 48.626 | 473 | 216 | 12 | 3 | 466 | 4 | 458 | 8.14e-140 | 410 |
MS.gene41583.t1 | MTR_2g015430 | 30.635 | 457 | 287 | 17 | 12 | 461 | 2 | 435 | 1.12e-54 | 189 |
MS.gene41583.t1 | MTR_1g040175 | 31.143 | 350 | 217 | 12 | 8 | 350 | 5 | 337 | 5.75e-36 | 139 |
MS.gene41583.t1 | MTR_1g053315 | 28.898 | 481 | 279 | 23 | 7 | 460 | 13 | 457 | 1.06e-34 | 135 |
MS.gene41583.t1 | MTR_7g027175 | 30.563 | 373 | 226 | 13 | 8 | 370 | 13 | 362 | 1.40e-33 | 132 |
MS.gene41583.t1 | MTR_7g110610 | 29.794 | 339 | 174 | 10 | 19 | 351 | 12 | 292 | 9.08e-33 | 128 |
MS.gene41583.t1 | MTR_3g071320 | 27.873 | 409 | 259 | 13 | 12 | 403 | 5 | 394 | 2.92e-31 | 125 |
MS.gene41583.t1 | MTR_8g096530 | 28.912 | 377 | 224 | 14 | 10 | 370 | 5 | 353 | 5.62e-31 | 124 |
MS.gene41583.t1 | MTR_1g081660 | 26.932 | 453 | 294 | 13 | 21 | 463 | 22 | 447 | 1.23e-30 | 124 |
MS.gene41583.t1 | MTR_1g040215 | 28.152 | 341 | 217 | 10 | 19 | 350 | 16 | 337 | 2.54e-30 | 123 |
MS.gene41583.t1 | MTR_7g114550 | 28.107 | 338 | 222 | 8 | 19 | 350 | 17 | 339 | 1.33e-28 | 118 |
MS.gene41583.t1 | MTR_7g114520 | 29.143 | 350 | 231 | 9 | 6 | 350 | 5 | 342 | 2.00e-28 | 117 |
MS.gene41583.t1 | MTR_5g076700 | 27.066 | 351 | 238 | 7 | 6 | 351 | 4 | 341 | 2.40e-27 | 114 |
MS.gene41583.t1 | MTR_3g098980 | 27.838 | 370 | 236 | 13 | 10 | 370 | 12 | 359 | 2.51e-27 | 114 |
MS.gene41583.t1 | MTR_7g114560 | 26.934 | 349 | 238 | 8 | 6 | 350 | 4 | 339 | 1.53e-25 | 109 |
MS.gene41583.t1 | MTR_7g114490 | 26.216 | 370 | 254 | 8 | 6 | 371 | 4 | 358 | 7.34e-24 | 104 |
MS.gene41583.t1 | MTR_8g075610 | 27.247 | 356 | 239 | 11 | 19 | 371 | 1 | 339 | 8.84e-24 | 103 |
MS.gene41583.t1 | MTR_1g040320 | 29.769 | 346 | 191 | 12 | 8 | 350 | 5 | 301 | 1.39e-23 | 103 |
MS.gene41583.t1 | MTR_2g105330 | 26.158 | 367 | 236 | 13 | 12 | 367 | 3 | 345 | 9.44e-23 | 100 |
MS.gene41583.t1 | MTR_7g114470 | 26.346 | 353 | 237 | 11 | 6 | 350 | 5 | 342 | 9.54e-23 | 100 |
MS.gene41583.t1 | MTR_1g040315 | 28.617 | 311 | 192 | 10 | 19 | 321 | 16 | 304 | 1.11e-22 | 100 |
MS.gene41583.t1 | MTR_2g064495 | 26.431 | 367 | 235 | 13 | 12 | 367 | 3 | 345 | 1.40e-22 | 100 |
MS.gene41583.t1 | MTR_3g026950 | 24.634 | 410 | 255 | 18 | 20 | 409 | 10 | 385 | 2.61e-22 | 99.8 |
MS.gene41583.t1 | MTR_3g112180 | 24.819 | 415 | 250 | 14 | 15 | 406 | 15 | 390 | 5.55e-22 | 98.6 |
MS.gene41583.t1 | MTR_4g007540 | 26.738 | 374 | 226 | 14 | 12 | 367 | 3 | 346 | 1.13e-21 | 97.4 |
MS.gene41583.t1 | MTR_3g049150 | 25.815 | 368 | 233 | 16 | 14 | 364 | 4 | 348 | 5.35e-20 | 92.8 |
MS.gene41583.t1 | MTR_4g127650 | 28.045 | 353 | 219 | 12 | 11 | 348 | 9 | 341 | 5.53e-20 | 92.8 |
MS.gene41583.t1 | MTR_4g097090 | 26.761 | 355 | 218 | 11 | 14 | 349 | 11 | 342 | 7.33e-19 | 89.4 |
MS.gene41583.t1 | MTR_1g040195 | 25.062 | 403 | 264 | 12 | 70 | 463 | 41 | 414 | 2.66e-18 | 87.4 |
MS.gene41583.t1 | MTR_7g086000 | 25.753 | 365 | 233 | 12 | 20 | 361 | 12 | 361 | 6.67e-18 | 86.3 |
MS.gene41583.t1 | MTR_7g085930 | 26.790 | 377 | 232 | 19 | 19 | 371 | 13 | 369 | 7.33e-18 | 86.3 |
MS.gene41583.t1 | MTR_7g085990 | 26.596 | 376 | 234 | 17 | 19 | 371 | 9 | 365 | 1.59e-16 | 82.0 |
MS.gene41583.t1 | MTR_4g013050 | 24.302 | 358 | 219 | 10 | 20 | 374 | 12 | 320 | 4.18e-16 | 80.5 |
MS.gene41583.t1 | MTR_0502s0010 | 28.502 | 207 | 128 | 7 | 152 | 350 | 44 | 238 | 9.00e-16 | 77.0 |
MS.gene41583.t1 | MTR_7g084940 | 25.185 | 405 | 262 | 16 | 5 | 397 | 9 | 384 | 5.47e-15 | 77.4 |
MS.gene41583.t1 | MTR_0042s0190 | 29.282 | 181 | 116 | 7 | 174 | 350 | 1 | 173 | 5.83e-14 | 72.8 |
MS.gene41583.t1 | MTR_7g114510 | 24.516 | 310 | 216 | 8 | 156 | 463 | 8 | 301 | 1.35e-13 | 72.0 |
MS.gene41583.t1 | MTR_7g056087 | 23.232 | 396 | 250 | 15 | 11 | 376 | 3 | 374 | 2.20e-13 | 72.4 |
MS.gene41583.t1 | MTR_3g101960 | 26.335 | 281 | 174 | 9 | 71 | 336 | 69 | 331 | 9.69e-12 | 67.4 |
MS.gene41583.t1 | MTR_3g102020 | 25.271 | 277 | 182 | 8 | 71 | 336 | 70 | 332 | 1.53e-11 | 66.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41583.t1 | AT5G07080 | 37.924 | 472 | 248 | 14 | 6 | 463 | 8 | 448 | 9.08e-88 | 276 |
MS.gene41583.t1 | AT2G25150 | 37.945 | 477 | 265 | 12 | 1 | 467 | 1 | 456 | 2.83e-85 | 270 |
MS.gene41583.t1 | AT2G23510 | 38.190 | 453 | 250 | 13 | 19 | 463 | 20 | 450 | 3.49e-83 | 264 |
MS.gene41583.t1 | AT3G47170 | 35.881 | 471 | 266 | 12 | 12 | 463 | 12 | 465 | 9.61e-78 | 250 |
MS.gene41583.t1 | AT1G28680 | 33.551 | 459 | 275 | 14 | 12 | 461 | 4 | 441 | 8.17e-69 | 226 |
MS.gene41583.t1 | AT1G28680 | 35.657 | 373 | 215 | 12 | 12 | 375 | 4 | 360 | 2.73e-60 | 202 |
MS.gene41583.t1 | AT3G62160 | 30.499 | 341 | 204 | 10 | 18 | 351 | 11 | 325 | 7.99e-37 | 140 |
MS.gene41583.t1 | AT5G41040 | 28.763 | 372 | 237 | 12 | 8 | 370 | 29 | 381 | 3.48e-35 | 136 |
MS.gene41583.t1 | AT5G41040 | 28.763 | 372 | 237 | 12 | 8 | 370 | 13 | 365 | 3.59e-35 | 136 |
MS.gene41583.t1 | AT5G17540 | 28.000 | 375 | 247 | 10 | 8 | 375 | 5 | 363 | 7.95e-30 | 121 |
MS.gene41583.t1 | AT3G03480 | 27.296 | 392 | 256 | 10 | 8 | 393 | 15 | 383 | 3.95e-29 | 119 |
MS.gene41583.t1 | AT2G40230 | 28.173 | 394 | 255 | 12 | 12 | 397 | 5 | 378 | 1.71e-27 | 114 |
MS.gene41583.t1 | AT3G48720 | 27.348 | 362 | 239 | 13 | 15 | 370 | 12 | 355 | 2.78e-26 | 110 |
MS.gene41583.t1 | AT5G48930 | 27.717 | 368 | 242 | 14 | 10 | 371 | 1 | 350 | 3.13e-26 | 110 |
MS.gene41583.t1 | AT1G03390 | 26.291 | 426 | 253 | 16 | 8 | 409 | 13 | 401 | 1.23e-25 | 109 |
MS.gene41583.t1 | AT5G63560 | 27.151 | 372 | 237 | 14 | 8 | 370 | 5 | 351 | 7.68e-24 | 103 |
MS.gene41583.t1 | AT1G27620 | 25.441 | 397 | 243 | 13 | 18 | 397 | 15 | 375 | 1.75e-21 | 97.1 |
MS.gene41583.t1 | AT2G19070 | 26.464 | 461 | 288 | 18 | 20 | 457 | 12 | 444 | 1.37e-20 | 94.4 |
MS.gene41583.t1 | AT1G24430 | 27.586 | 319 | 193 | 15 | 8 | 320 | 1 | 287 | 1.34e-18 | 88.2 |
MS.gene41583.t1 | AT5G57840 | 27.778 | 378 | 227 | 19 | 10 | 369 | 1 | 350 | 7.52e-18 | 86.3 |
MS.gene41583.t1 | AT1G65450 | 26.893 | 383 | 241 | 15 | 2 | 364 | 4 | 367 | 2.06e-17 | 84.7 |
Find 89 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACTTTACCTAAAGGGTATTA+TGG | 0.159161 | 3.1:-50224941 | MS.gene41583:CDS |
TCATTTCTAGCTTTAGGTTT+AGG | 0.176003 | 3.1:+50226903 | None:intergenic |
AGGACGAAATTGAAGCTTTA+AGG | 0.184665 | 3.1:-50224505 | MS.gene41583:CDS |
CATTTCTAGCTTTAGGTTTA+GGG | 0.192317 | 3.1:+50226904 | None:intergenic |
ACAATACATGATTCTGATTC+AGG | 0.214559 | 3.1:-50226758 | MS.gene41583:CDS |
TTGCTCTGAAGATTTGTAAT+TGG | 0.242943 | 3.1:+50225338 | None:intergenic |
CCTTTCTTCTCTTCATTACT+TGG | 0.251953 | 3.1:-50225515 | MS.gene41583:CDS |
TCATGATCATCAAGTTTATT+AGG | 0.262038 | 3.1:+50224593 | None:intergenic |
CATCTTTCATTTCTAGCTTT+AGG | 0.271621 | 3.1:+50226897 | None:intergenic |
GATTATTATTATCCTCTTGC+AGG | 0.285447 | 3.1:-50226689 | MS.gene41583:intron |
AAGTTACCCTTTGGTATTCA+TGG | 0.294628 | 3.1:-50225431 | MS.gene41583:CDS |
CACAAACTCAATAAACTCTT+TGG | 0.315547 | 3.1:-50224798 | MS.gene41583:CDS |
CTTTGTGGCGGTTTCACAAT+TGG | 0.320034 | 3.1:-50225397 | MS.gene41583:CDS |
GGTGTTGGTGGTGCAGAATA+TGG | 0.338152 | 3.1:-50225571 | MS.gene41583:CDS |
GAATTCCCATAATACCCTTT+AGG | 0.340816 | 3.1:+50224935 | None:intergenic |
CTTTACCTAAAGGGTATTAT+GGG | 0.352647 | 3.1:-50224940 | MS.gene41583:CDS |
CATGCTATTTGTGACGCATT+TGG | 0.353743 | 3.1:-50225361 | MS.gene41583:CDS |
TGCAATTAGCATATGCTTCT+AGG | 0.353944 | 3.1:+50225539 | None:intergenic |
GGCGGTTTCACAATTGGAAT+GGG | 0.359194 | 3.1:-50225391 | MS.gene41583:CDS |
TCTAAGTGAGTTGAGACATT+TGG | 0.363120 | 3.1:-50224717 | MS.gene41583:CDS |
CTAAGTGAGTTGAGACATTT+GGG | 0.370865 | 3.1:-50224716 | MS.gene41583:CDS |
TTCAGAGCAATTGTTGAACT+TGG | 0.384460 | 3.1:-50225325 | MS.gene41583:CDS |
AACTTAGGCATAGCAGCAAC+AGG | 0.385326 | 3.1:+50224530 | None:intergenic |
GTTTCTTCACTCGAAGTTGT+AGG | 0.391217 | 3.1:-50224483 | None:intergenic |
AGAAGCGGTCTCAAAGGCTT+TGG | 0.391560 | 3.1:-50226711 | MS.gene41583:CDS |
ATTATGATACTTTACCTAAA+GGG | 0.409088 | 3.1:-50224949 | MS.gene41583:CDS |
TGCTGCTATGCCTAAGTTCA+AGG | 0.415385 | 3.1:-50224525 | MS.gene41583:CDS |
GCTTGATATTCCTTCTCCTA+TGG | 0.424499 | 3.1:-50225458 | MS.gene41583:CDS |
TATGGATAAAAGTTACCCTT+TGG | 0.431832 | 3.1:-50225440 | MS.gene41583:CDS |
TGTCAATGGAAGGAGGAGTT+AGG | 0.442569 | 3.1:-50224568 | MS.gene41583:CDS |
GTGAAAATGCAACAGATTCT+CGG | 0.449271 | 3.1:+50225206 | None:intergenic |
GGAAGACTTAGAGTCGAGTT+TGG | 0.454551 | 3.1:-50225592 | MS.gene41583:CDS |
TCAATTTCGTCCTTGAACTT+AGG | 0.461185 | 3.1:+50224515 | None:intergenic |
TTGGAAACGAATCAAGAAGA+TGG | 0.466104 | 3.1:-50224779 | MS.gene41583:CDS |
TGGCGGTTTCACAATTGGAA+TGG | 0.467227 | 3.1:-50225392 | MS.gene41583:CDS |
TCCCACACAGGTTTCACTGA+TGG | 0.471401 | 3.1:+50225286 | None:intergenic |
TGCAACAGATTCTCGGTCAG+TGG | 0.476338 | 3.1:+50225213 | None:intergenic |
CCAAGCATCTTGCATGGTGC+AGG | 0.480198 | 3.1:+50224644 | None:intergenic |
AAGTTGCGTCTAATACCAAC+TGG | 0.480983 | 3.1:+50224977 | None:intergenic |
GATTATGATACTTTACCTAA+AGG | 0.489847 | 3.1:-50224950 | MS.gene41583:CDS |
CCAAGTAATGAAGAGAAGAA+AGG | 0.491172 | 3.1:+50225515 | None:intergenic |
TGGTATTAGACGCAACTTGA+AGG | 0.491366 | 3.1:-50224972 | MS.gene41583:CDS |
CTCGGTCAGTGGGACATTGT+GGG | 0.504074 | 3.1:+50225224 | None:intergenic |
AGCATGGAATTGGAAGATAG+TGG | 0.504909 | 3.1:-50224752 | MS.gene41583:CDS |
GCAATTGTTGAACTTGGAAG+AGG | 0.508018 | 3.1:-50225319 | MS.gene41583:CDS |
CAAGTAATGAAGAGAAGAAA+GGG | 0.508480 | 3.1:+50225516 | None:intergenic |
TTAGCATATGCTTCTAGGAA+TGG | 0.521867 | 3.1:+50225544 | None:intergenic |
CTTAGAGTCGAGTTTGGTGT+TGG | 0.525295 | 3.1:-50225586 | MS.gene41583:CDS |
TCTCGGTCAGTGGGACATTG+TGG | 0.526038 | 3.1:+50225223 | None:intergenic |
CCTGCACCATGCAAGATGCT+TGG | 0.531684 | 3.1:-50224644 | MS.gene41583:CDS |
AGCTTAACAATTTCATAGAG+TGG | 0.539783 | 3.1:+50224863 | None:intergenic |
GGAAGATAGTGGTGCACTAA+CGG | 0.541116 | 3.1:-50224741 | MS.gene41583:CDS |
ATTTCTAGCTTTAGGTTTAG+GGG | 0.543168 | 3.1:+50226905 | None:intergenic |
ATGGTGACAAAATTTCTTTG+TGG | 0.543302 | 3.1:-50225412 | MS.gene41583:CDS |
CACAGAAATTGCAAAAGACT+TGG | 0.546007 | 3.1:-50225482 | MS.gene41583:CDS |
GACAGAGAAAGAATACAAGA+AGG | 0.550104 | 3.1:+50226845 | None:intergenic |
AGAGTCGAGTTTGGTGTTGG+TGG | 0.551439 | 3.1:-50225583 | MS.gene41583:CDS |
TTGTCACCATGAATACCAAA+GGG | 0.551952 | 3.1:+50225425 | None:intergenic |
GCGGTTTCACAATTGGAATG+GGG | 0.553602 | 3.1:-50225390 | MS.gene41583:CDS |
TGATGATCATGATCTGTCAA+TGG | 0.555180 | 3.1:-50224582 | MS.gene41583:CDS |
GCCTTAAAACTTAACAGCAA+TGG | 0.564131 | 3.1:-50225019 | MS.gene41583:CDS |
TTTGTCACCATGAATACCAA+AGG | 0.565547 | 3.1:+50225424 | None:intergenic |
TCAGTGGGACATTGTGGGAA+AGG | 0.570113 | 3.1:+50225229 | None:intergenic |
TTTACAAGTATACCTGCAAG+AGG | 0.571753 | 3.1:+50226677 | None:intergenic |
AAGTGCTTGCAGGTTATGTG+TGG | 0.575180 | 3.1:-50225057 | MS.gene41583:CDS |
AATCATGTATTGTTGATGAC+CGG | 0.576588 | 3.1:+50226768 | None:intergenic |
CTAGTGAAACATGCTGGTGA+TGG | 0.577908 | 3.1:-50225613 | MS.gene41583:CDS |
CAAGAAGGAATAGACTTGGA+TGG | 0.586286 | 3.1:+50226860 | None:intergenic |
GCGTCTAATACCAACTGGAA+TGG | 0.590884 | 3.1:+50224982 | None:intergenic |
GCAACAGATTCTCGGTCAGT+GGG | 0.591813 | 3.1:+50225214 | None:intergenic |
ATTCAAAGAAGCGGTCTCAA+AGG | 0.594281 | 3.1:-50226717 | MS.gene41583:CDS |
AATACAAGAAGGAATAGACT+TGG | 0.595657 | 3.1:+50226856 | None:intergenic |
GTGACAAAATTTCTTTGTGG+CGG | 0.608273 | 3.1:-50225409 | MS.gene41583:CDS |
ATGAGAAAATACACGTATCG+AGG | 0.609004 | 3.1:+50224618 | None:intergenic |
CGGTTTCACAATTGGAATGG+GGG | 0.610007 | 3.1:-50225389 | MS.gene41583:CDS |
GGTAGACTAGTGAAACATGC+TGG | 0.615068 | 3.1:-50225619 | MS.gene41583:CDS |
TTGTCATGTATTCAAAGAAG+CGG | 0.616564 | 3.1:-50226726 | MS.gene41583:CDS |
GTTTGTGACATAATCAGCAG+TGG | 0.618396 | 3.1:+50224814 | None:intergenic |
TGCTTGCAGGTTATGTGTGG+AGG | 0.634525 | 3.1:-50225054 | MS.gene41583:CDS |
GCTTCTTTGAATACATGACA+AGG | 0.645628 | 3.1:+50226728 | None:intergenic |
TGAGAAAATACACGTATCGA+GGG | 0.645992 | 3.1:+50224619 | None:intergenic |
GATCATGATCTGTCAATGGA+AGG | 0.648767 | 3.1:-50224578 | MS.gene41583:CDS |
AGGGTGCCAAGCATCTTGCA+TGG | 0.649943 | 3.1:+50224638 | None:intergenic |
CATGATCTGTCAATGGAAGG+AGG | 0.651977 | 3.1:-50224575 | MS.gene41583:CDS |
ACAGTGTTGACCATTCCAGT+TGG | 0.658221 | 3.1:-50224992 | MS.gene41583:CDS |
ACTTAGGCATAGCAGCAACA+GGG | 0.673752 | 3.1:+50224531 | None:intergenic |
CTTCTTTGAATACATGACAA+GGG | 0.683868 | 3.1:+50226729 | None:intergenic |
AGCCATCAGTGAAACCTGTG+TGG | 0.685980 | 3.1:-50225288 | MS.gene41583:CDS |
GCCATCAGTGAAACCTGTGT+GGG | 0.717270 | 3.1:-50225287 | MS.gene41583:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATGAATAAAAATGAAAAAAT+AGG | - | chr3.1:50226313-50226332 | MS.gene41583:intron | 10.0% |
!! | TGAATAAAAATGAAAAAATA+GGG | - | chr3.1:50226314-50226333 | MS.gene41583:intron | 10.0% |
!! | AATTGATAAAGGAAAAAAAT+TGG | - | chr3.1:50225095-50225114 | MS.gene41583:CDS | 15.0% |
!! | CAATTCAAATGTTAAAATAA+AGG | + | chr3.1:50225572-50225591 | None:intergenic | 15.0% |
!! | GAAAACTAAAATAAACATAA+GGG | - | chr3.1:50225533-50225552 | MS.gene41583:CDS | 15.0% |
!! | TGAAAACTAAAATAAACATA+AGG | - | chr3.1:50225532-50225551 | MS.gene41583:CDS | 15.0% |
!!! | TTAATTTTTTGTTACATTGT+TGG | + | chr3.1:50224953-50224972 | None:intergenic | 15.0% |
!!! | TTGAAACTTTTAAAACATAA+GGG | + | chr3.1:50225214-50225233 | None:intergenic | 15.0% |
!! | ATTATGATACTTTACCTAAA+GGG | - | chr3.1:50226458-50226477 | MS.gene41583:intron | 20.0% |
!! | GAAAACTAAAATAAACACAA+GGG | + | chr3.1:50225183-50225202 | None:intergenic | 20.0% |
!! | GTTACACTTTAAATTGATAA+AGG | - | chr3.1:50225084-50225103 | MS.gene41583:CDS | 20.0% |
!! | TATAATGATTAGCAAAAACA+CGG | - | chr3.1:50224763-50224782 | MS.gene41583:CDS | 20.0% |
!! | TGAAAACTAAAATAAACACA+AGG | + | chr3.1:50225184-50225203 | None:intergenic | 20.0% |
!! | TGTCATTGAAATAAATATCA+TGG | + | chr3.1:50224930-50224949 | None:intergenic | 20.0% |
!! | TTATTTGTATTGAAAGTTGA+TGG | - | chr3.1:50225616-50225635 | MS.gene41583:CDS | 20.0% |
!! | TTGAAACTTGTAAAATGTAA+GGG | - | chr3.1:50225473-50225492 | MS.gene41583:CDS | 20.0% |
!!! | ACGTTTTAAAAGTTTCAAAT+TGG | - | chr3.1:50225245-50225264 | MS.gene41583:CDS | 20.0% |
!!! | AGTATTATTTTGATTCACAA+AGG | + | chr3.1:50226227-50226246 | None:intergenic | 20.0% |
!!! | ATGTTTTAAAAGTTTCAAGT+TGG | - | chr3.1:50225216-50225235 | MS.gene41583:CDS | 20.0% |
!!! | ATGTTTTAAAAGTTTCAAGT+TGG | + | chr3.1:50225235-50225216 | None:intergenic | 20.0% |
!!! | CAATATTGTTTTAAAGTAGA+GGG | - | chr3.1:50226259-50226278 | MS.gene41583:intron | 20.0% |
!!! | CAGGAAAATATAATTTTTGA+AGG | - | chr3.1:50226718-50226737 | MS.gene41583:CDS | 20.0% |
!!! | CTTGAAACTTTTAAAACATA+AGG | + | chr3.1:50225215-50225234 | None:intergenic | 20.0% |
!!! | GTATTATTTTGATTCACAAA+GGG | + | chr3.1:50226226-50226245 | None:intergenic | 20.0% |
!!! | GTTTATTTTAGTTTTCAAGT+TGG | - | chr3.1:50225187-50225206 | MS.gene41583:CDS | 20.0% |
!!! | GTTTATTTTAGTTTTCAAGT+TGG | + | chr3.1:50225206-50225187 | None:intergenic | 20.0% |
!!! | GTTTGTTACACTTTTATTTT+AGG | - | chr3.1:50225139-50225158 | MS.gene41583:CDS | 20.0% |
!!! | TTGAAACTTTTAAAACATGA+AGG | - | chr3.1:50225502-50225521 | MS.gene41583:CDS | 20.0% |
!!! | TTGAAACTTTTAAAACGTAA+GGG | + | chr3.1:50225243-50225262 | None:intergenic | 20.0% |
!!! | TTTGAAACTTTTAAAACGTA+AGG | + | chr3.1:50225244-50225263 | None:intergenic | 20.0% |
! | ATTACAGAAAACGTTGTTTA+AGG | - | chr3.1:50225012-50225031 | MS.gene41583:CDS | 25.0% |
! | CAACGTATGAAAATTATGAA+AGG | - | chr3.1:50224824-50224843 | MS.gene41583:CDS | 25.0% |
! | CTTGAAACTTGTAAAATGTA+AGG | - | chr3.1:50225472-50225491 | MS.gene41583:CDS | 25.0% |
! | GATTATGATACTTTACCTAA+AGG | - | chr3.1:50226457-50226476 | MS.gene41583:intron | 25.0% |
! | GGATCTTTAAATTTAAGTGA+CGG | - | chr3.1:50225407-50225426 | MS.gene41583:CDS | 25.0% |
! | GTCACTTAAATTTAAAGATC+CGG | + | chr3.1:50225408-50225427 | None:intergenic | 25.0% |
! | TCACTTAAATTTAAAGATCC+GGG | + | chr3.1:50225407-50225426 | None:intergenic | 25.0% |
! | TCATGATCATCAAGTTTATT+AGG | + | chr3.1:50226817-50226836 | None:intergenic | 25.0% |
! | TCTGTAATAAAGATTGTTGT+TGG | + | chr3.1:50225000-50225019 | None:intergenic | 25.0% |
! | TTACAGAAAACGTTGTTTAA+GGG | - | chr3.1:50225013-50225032 | MS.gene41583:CDS | 25.0% |
!!! | AATAACTGCTTTCAGTTTTT+TGG | + | chr3.1:50225668-50225687 | None:intergenic | 25.0% |
!!! | ACATTTTACAAGTTTCAAGT+TGG | + | chr3.1:50225471-50225490 | None:intergenic | 25.0% |
!!! | ATAACTGCTTTCAGTTTTTT+GGG | + | chr3.1:50225667-50225686 | None:intergenic | 25.0% |
!!! | GCAATATTGTTTTAAAGTAG+AGG | - | chr3.1:50226258-50226277 | MS.gene41583:intron | 25.0% |
AATACAAGAAGGAATAGACT+TGG | + | chr3.1:50224554-50224573 | None:intergenic | 30.0% | |
ACAATACATGATTCTGATTC+AGG | - | chr3.1:50224649-50224668 | MS.gene41583:CDS | 30.0% | |
AGCTTAACAATTTCATAGAG+TGG | + | chr3.1:50226547-50226566 | None:intergenic | 30.0% | |
ATGGTGACAAAATTTCTTTG+TGG | - | chr3.1:50225995-50226014 | MS.gene41583:intron | 30.0% | |
CAAGTAATGAAGAGAAGAAA+GGG | + | chr3.1:50225894-50225913 | None:intergenic | 30.0% | |
CACAAACTCAATAAACTCTT+TGG | - | chr3.1:50226609-50226628 | MS.gene41583:intron | 30.0% | |
CTTCTTTGAATACATGACAA+GGG | + | chr3.1:50224681-50224700 | None:intergenic | 30.0% | |
GATTATTATTATCCTCTTGC+AGG | - | chr3.1:50224718-50224737 | MS.gene41583:CDS | 30.0% | |
TATGGATAAAAGTTACCCTT+TGG | - | chr3.1:50225967-50225986 | MS.gene41583:intron | 30.0% | |
TTAAACTCAATATCATGTCG+CGG | + | chr3.1:50225309-50225328 | None:intergenic | 30.0% | |
TTCTAACATGAGTAACGTTT+AGG | - | chr3.1:50225444-50225463 | MS.gene41583:CDS | 30.0% | |
TTGTCATGTATTCAAAGAAG+CGG | - | chr3.1:50224681-50224700 | MS.gene41583:CDS | 30.0% | |
! | AAAGGGTAACTTTTATCCAT+AGG | + | chr3.1:50225968-50225987 | None:intergenic | 30.0% |
! | TAACTTTTATCCATAGGAGA+AGG | + | chr3.1:50225962-50225981 | None:intergenic | 30.0% |
!! | AATCATGTATTGTTGATGAC+CGG | + | chr3.1:50224642-50224661 | None:intergenic | 30.0% |
!! | ACCATTGCTGTTAAGTTTTA+AGG | + | chr3.1:50226392-50226411 | None:intergenic | 30.0% |
!! | ACTTTACCTAAAGGGTATTA+TGG | - | chr3.1:50226466-50226485 | MS.gene41583:intron | 30.0% |
!! | ATTTCTAGCTTTAGGTTTAG+GGG | + | chr3.1:50224505-50224524 | None:intergenic | 30.0% |
!! | CATCTTTCATTTCTAGCTTT+AGG | + | chr3.1:50224513-50224532 | None:intergenic | 30.0% |
!! | CATTTCTAGCTTTAGGTTTA+GGG | + | chr3.1:50224506-50224525 | None:intergenic | 30.0% |
!! | CTTTACCTAAAGGGTATTAT+GGG | - | chr3.1:50226467-50226486 | MS.gene41583:intron | 30.0% |
!! | GTCATTTTGTTCATGTATAC+CGG | - | chr3.1:50224620-50224639 | MS.gene41583:CDS | 30.0% |
!! | TCATTTCTAGCTTTAGGTTT+AGG | + | chr3.1:50224507-50224526 | None:intergenic | 30.0% |
!! | TTGCTCTGAAGATTTGTAAT+TGG | + | chr3.1:50226072-50226091 | None:intergenic | 30.0% |
AAGTTACCCTTTGGTATTCA+TGG | - | chr3.1:50225976-50225995 | MS.gene41583:intron | 35.0% | |
AATAAAAAGAGCGGAAAGAC+GGG | + | chr3.1:50224800-50224819 | None:intergenic | 35.0% | |
AGGACGAAATTGAAGCTTTA+AGG | - | chr3.1:50226902-50226921 | MS.gene41583:CDS | 35.0% | |
ATGAGAAAATACACGTATCG+AGG | + | chr3.1:50226792-50226811 | None:intergenic | 35.0% | |
CAATAAAAAGAGCGGAAAGA+CGG | + | chr3.1:50224801-50224820 | None:intergenic | 35.0% | |
CACAGAAATTGCAAAAGACT+TGG | - | chr3.1:50225925-50225944 | MS.gene41583:intron | 35.0% | |
CCAAGTAATGAAGAGAAGAA+AGG | + | chr3.1:50225895-50225914 | None:intergenic | 35.0% | |
CCTTTCTTCTCTTCATTACT+TGG | - | chr3.1:50225892-50225911 | MS.gene41583:intron | 35.0% | |
GAATTCCCATAATACCCTTT+AGG | + | chr3.1:50226475-50226494 | None:intergenic | 35.0% | |
GACAGAGAAAGAATACAAGA+AGG | + | chr3.1:50224565-50224584 | None:intergenic | 35.0% | |
GCCTTAAAACTTAACAGCAA+TGG | - | chr3.1:50226388-50226407 | MS.gene41583:intron | 35.0% | |
GCTTCTTTGAATACATGACA+AGG | + | chr3.1:50224682-50224701 | None:intergenic | 35.0% | |
GTGAAAATGCAACAGATTCT+CGG | + | chr3.1:50226204-50226223 | None:intergenic | 35.0% | |
GTGACAAAATTTCTTTGTGG+CGG | - | chr3.1:50225998-50226017 | MS.gene41583:intron | 35.0% | |
TCAATTTCGTCCTTGAACTT+AGG | + | chr3.1:50226895-50226914 | None:intergenic | 35.0% | |
TGAGAAAATACACGTATCGA+GGG | + | chr3.1:50226791-50226810 | None:intergenic | 35.0% | |
TGATGATCATGATCTGTCAA+TGG | - | chr3.1:50226825-50226844 | MS.gene41583:CDS | 35.0% | |
TGCAATTAGCATATGCTTCT+AGG | + | chr3.1:50225871-50225890 | None:intergenic | 35.0% | |
TGGGAAAGAGAAAAACAAGT+TGG | - | chr3.1:50226139-50226158 | MS.gene41583:intron | 35.0% | |
TTCAGAGCAATTGTTGAACT+TGG | - | chr3.1:50226082-50226101 | MS.gene41583:intron | 35.0% | |
TTGGAAACGAATCAAGAAGA+TGG | - | chr3.1:50226628-50226647 | MS.gene41583:intron | 35.0% | |
TTGTCACCATGAATACCAAA+GGG | + | chr3.1:50225985-50226004 | None:intergenic | 35.0% | |
TTTACAAGTATACCTGCAAG+AGG | + | chr3.1:50224733-50224752 | None:intergenic | 35.0% | |
TTTGTCACCATGAATACCAA+AGG | + | chr3.1:50225986-50226005 | None:intergenic | 35.0% | |
! | CTAAGTGAGTTGAGACATTT+GGG | - | chr3.1:50226691-50226710 | MS.gene41583:CDS | 35.0% |
! | TCTAAGTGAGTTGAGACATT+TGG | - | chr3.1:50226690-50226709 | MS.gene41583:CDS | 35.0% |
! | TTAGCATATGCTTCTAGGAA+TGG | + | chr3.1:50225866-50225885 | None:intergenic | 35.0% |
!!! | AGATGGTTTTAGCATGGAAT+TGG | - | chr3.1:50226645-50226664 | MS.gene41583:intron | 35.0% |
!!! | TCAAGAAGATGGTTTTAGCA+TGG | - | chr3.1:50226639-50226658 | MS.gene41583:intron | 35.0% |
AAGTTGCGTCTAATACCAAC+TGG | + | chr3.1:50226433-50226452 | None:intergenic | 40.0% | |
AGCATGGAATTGGAAGATAG+TGG | - | chr3.1:50226655-50226674 | MS.gene41583:intron | 40.0% | |
ATTCAAAGAAGCGGTCTCAA+AGG | - | chr3.1:50224690-50224709 | MS.gene41583:CDS | 40.0% | |
CAAGAAGGAATAGACTTGGA+TGG | + | chr3.1:50224550-50224569 | None:intergenic | 40.0% | |
CGTTGTCGCAATAAAAAGAG+CGG | + | chr3.1:50224809-50224828 | None:intergenic | 40.0% | |
GATCATGATCTGTCAATGGA+AGG | - | chr3.1:50226829-50226848 | MS.gene41583:CDS | 40.0% | |
GCAATTGTTGAACTTGGAAG+AGG | - | chr3.1:50226088-50226107 | MS.gene41583:intron | 40.0% | |
GCTTGATATTCCTTCTCCTA+TGG | - | chr3.1:50225949-50225968 | MS.gene41583:intron | 40.0% | |
GTTCAAAACGTTACTCACGT+TGG | - | chr3.1:50225267-50225286 | MS.gene41583:CDS | 40.0% | |
GTTTGTGACATAATCAGCAG+TGG | + | chr3.1:50226596-50226615 | None:intergenic | 40.0% | |
TGGTATTAGACGCAACTTGA+AGG | - | chr3.1:50226435-50226454 | MS.gene41583:intron | 40.0% | |
! | AAAGATCCGGGTTGACAATA+TGG | + | chr3.1:50225395-50225414 | None:intergenic | 40.0% |
! | AAGATCCGGGTTGACAATAT+GGG | + | chr3.1:50225394-50225413 | None:intergenic | 40.0% |
! | CATGCTATTTGTGACGCATT+TGG | - | chr3.1:50226046-50226065 | MS.gene41583:intron | 40.0% |
! | CATGTTTCACTAGTCTACCT+GGG | + | chr3.1:50225787-50225806 | None:intergenic | 40.0% |
! | TGTTTTTCTCTTTCCCACAC+AGG | + | chr3.1:50226136-50226155 | None:intergenic | 40.0% |
!! | GAAGTGAGATGTTGGTTTAG+TGG | + | chr3.1:50225760-50225779 | None:intergenic | 40.0% |
!! | GTTGAGACATTTGGGTTTTC+AGG | - | chr3.1:50226699-50226718 | MS.gene41583:CDS | 40.0% |
!!! | ACAACTTTTGAAGTGCTTGC+AGG | - | chr3.1:50226340-50226359 | MS.gene41583:intron | 40.0% |
!!! | CTGCTTTCAGTTTTTTGGGT+TGG | + | chr3.1:50225663-50225682 | None:intergenic | 40.0% |
AACATCTCACTTCGTTTCCC+AGG | - | chr3.1:50225767-50225786 | MS.gene41583:intron | 45.0% | |
AACTTAGGCATAGCAGCAAC+AGG | + | chr3.1:50226880-50226899 | None:intergenic | 45.0% | |
AAGTGCTTGCAGGTTATGTG+TGG | - | chr3.1:50226350-50226369 | MS.gene41583:intron | 45.0% | |
ACTCAATATCATGTCGCGGA+AGG | + | chr3.1:50225305-50225324 | None:intergenic | 45.0% | |
ACTTAGGCATAGCAGCAACA+GGG | + | chr3.1:50226879-50226898 | None:intergenic | 45.0% | |
CATCACCCATATTGTCAACC+CGG | - | chr3.1:50225386-50225405 | MS.gene41583:CDS | 45.0% | |
CATGATCTGTCAATGGAAGG+AGG | - | chr3.1:50226832-50226851 | MS.gene41583:CDS | 45.0% | |
CGGTTTCACAATTGGAATGG+GGG | - | chr3.1:50226018-50226037 | MS.gene41583:intron | 45.0% | |
CTAGTGAAACATGCTGGTGA+TGG | - | chr3.1:50225794-50225813 | MS.gene41583:intron | 45.0% | |
CTCAATATCATGTCGCGGAA+GGG | + | chr3.1:50225304-50225323 | None:intergenic | 45.0% | |
CTTTGTGGCGGTTTCACAAT+TGG | - | chr3.1:50226010-50226029 | MS.gene41583:intron | 45.0% | |
GCGGTTTCACAATTGGAATG+GGG | - | chr3.1:50226017-50226036 | MS.gene41583:intron | 45.0% | |
GCGTCTAATACCAACTGGAA+TGG | + | chr3.1:50226428-50226447 | None:intergenic | 45.0% | |
GGAAGACTTAGAGTCGAGTT+TGG | - | chr3.1:50225815-50225834 | MS.gene41583:intron | 45.0% | |
GGCGGTTTCACAATTGGAAT+GGG | - | chr3.1:50226016-50226035 | MS.gene41583:intron | 45.0% | |
GGTAGACTAGTGAAACATGC+TGG | - | chr3.1:50225788-50225807 | MS.gene41583:intron | 45.0% | |
TGCTGCTATGCCTAAGTTCA+AGG | - | chr3.1:50226882-50226901 | MS.gene41583:CDS | 45.0% | |
TGGCGGTTTCACAATTGGAA+TGG | - | chr3.1:50226015-50226034 | MS.gene41583:intron | 45.0% | |
TGGGAAACGAAGTGAGATGT+TGG | + | chr3.1:50225768-50225787 | None:intergenic | 45.0% | |
TGTCAATGGAAGGAGGAGTT+AGG | - | chr3.1:50226839-50226858 | MS.gene41583:CDS | 45.0% | |
! | GCATGTTTCACTAGTCTACC+TGG | + | chr3.1:50225788-50225807 | None:intergenic | 45.0% |
! | GGAAGATAGTGGTGCACTAA+CGG | - | chr3.1:50226666-50226685 | MS.gene41583:intron | 45.0% |
!! | ACAGTGTTGACCATTCCAGT+TGG | - | chr3.1:50226415-50226434 | MS.gene41583:intron | 45.0% |
!! | CTTAGAGTCGAGTTTGGTGT+TGG | - | chr3.1:50225821-50225840 | MS.gene41583:intron | 45.0% |
AGAAGCGGTCTCAAAGGCTT+TGG | - | chr3.1:50224696-50224715 | MS.gene41583:CDS | 50.0% | |
AGCCATCAGTGAAACCTGTG+TGG | - | chr3.1:50226119-50226138 | MS.gene41583:intron | 50.0% | |
GCAACAGATTCTCGGTCAGT+GGG | + | chr3.1:50226196-50226215 | None:intergenic | 50.0% | |
GCCATCAGTGAAACCTGTGT+GGG | - | chr3.1:50226120-50226139 | MS.gene41583:intron | 50.0% | |
TCAGTGGGACATTGTGGGAA+AGG | + | chr3.1:50226181-50226200 | None:intergenic | 50.0% | |
TCCCACACAGGTTTCACTGA+TGG | + | chr3.1:50226124-50226143 | None:intergenic | 50.0% | |
TGCAACAGATTCTCGGTCAG+TGG | + | chr3.1:50226197-50226216 | None:intergenic | 50.0% | |
TGCTTGCAGGTTATGTGTGG+AGG | - | chr3.1:50226353-50226372 | MS.gene41583:intron | 50.0% | |
! | CGGGTTGACAATATGGGTGA+TGG | + | chr3.1:50225388-50225407 | None:intergenic | 50.0% |
!! | AGAGTCGAGTTTGGTGTTGG+TGG | - | chr3.1:50225824-50225843 | MS.gene41583:intron | 50.0% |
!! | GGTGTTGGTGGTGCAGAATA+TGG | - | chr3.1:50225836-50225855 | MS.gene41583:intron | 50.0% |
CCAAGCATCTTGCATGGTGC+AGG | + | chr3.1:50226766-50226785 | None:intergenic | 55.0% | |
CCTGCACCATGCAAGATGCT+TGG | - | chr3.1:50226763-50226782 | MS.gene41583:CDS | 55.0% | |
CTCGGTCAGTGGGACATTGT+GGG | + | chr3.1:50226186-50226205 | None:intergenic | 55.0% | |
TCTCGGTCAGTGGGACATTG+TGG | + | chr3.1:50226187-50226206 | None:intergenic | 55.0% | |
! | AGGGTGCCAAGCATCTTGCA+TGG | + | chr3.1:50226772-50226791 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.1 | gene | 50224484 | 50226945 | 50224484 | ID=MS.gene41583 |
chr3.1 | mRNA | 50224484 | 50226945 | 50224484 | ID=MS.gene41583.t1;Parent=MS.gene41583 |
chr3.1 | exon | 50226690 | 50226945 | 50226690 | ID=MS.gene41583.t1.exon1;Parent=MS.gene41583.t1 |
chr3.1 | CDS | 50226690 | 50226945 | 50226690 | ID=cds.MS.gene41583.t1;Parent=MS.gene41583.t1 |
chr3.1 | exon | 50224484 | 50225640 | 50224484 | ID=MS.gene41583.t1.exon2;Parent=MS.gene41583.t1 |
chr3.1 | CDS | 50224484 | 50225640 | 50224484 | ID=cds.MS.gene41583.t1;Parent=MS.gene41583.t1 |
Gene Sequence |
Protein sequence |