AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene41583


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41583.t1 MTR_3g465950 86.918 451 47 2 1 451 1 439 0.0 788
MS.gene41583.t1 MTR_3g465930 78.981 471 95 3 1 470 1 468 0.0 766
MS.gene41583.t1 MTR_3g465910 79.698 463 89 3 1 463 1 458 0.0 758
MS.gene41583.t1 MTR_3g465870 81.277 470 47 3 1 470 1 429 0.0 754
MS.gene41583.t1 MTR_3g465880 70.675 474 126 7 1 467 1 468 0.0 674
MS.gene41583.t1 MTR_3g465980 69.593 467 134 4 1 466 1 460 0.0 659
MS.gene41583.t1 MTR_3g465990 68.094 467 141 4 1 466 1 460 0.0 650
MS.gene41583.t1 MTR_6g053810 58.478 460 181 6 9 463 8 462 0.0 523
MS.gene41583.t1 MTR_4g055170 48.626 473 216 12 3 466 4 458 8.14e-140 410
MS.gene41583.t1 MTR_2g015430 30.635 457 287 17 12 461 2 435 1.12e-54 189
MS.gene41583.t1 MTR_1g040175 31.143 350 217 12 8 350 5 337 5.75e-36 139
MS.gene41583.t1 MTR_1g053315 28.898 481 279 23 7 460 13 457 1.06e-34 135
MS.gene41583.t1 MTR_7g027175 30.563 373 226 13 8 370 13 362 1.40e-33 132
MS.gene41583.t1 MTR_7g110610 29.794 339 174 10 19 351 12 292 9.08e-33 128
MS.gene41583.t1 MTR_3g071320 27.873 409 259 13 12 403 5 394 2.92e-31 125
MS.gene41583.t1 MTR_8g096530 28.912 377 224 14 10 370 5 353 5.62e-31 124
MS.gene41583.t1 MTR_1g081660 26.932 453 294 13 21 463 22 447 1.23e-30 124
MS.gene41583.t1 MTR_1g040215 28.152 341 217 10 19 350 16 337 2.54e-30 123
MS.gene41583.t1 MTR_7g114550 28.107 338 222 8 19 350 17 339 1.33e-28 118
MS.gene41583.t1 MTR_7g114520 29.143 350 231 9 6 350 5 342 2.00e-28 117
MS.gene41583.t1 MTR_5g076700 27.066 351 238 7 6 351 4 341 2.40e-27 114
MS.gene41583.t1 MTR_3g098980 27.838 370 236 13 10 370 12 359 2.51e-27 114
MS.gene41583.t1 MTR_7g114560 26.934 349 238 8 6 350 4 339 1.53e-25 109
MS.gene41583.t1 MTR_7g114490 26.216 370 254 8 6 371 4 358 7.34e-24 104
MS.gene41583.t1 MTR_8g075610 27.247 356 239 11 19 371 1 339 8.84e-24 103
MS.gene41583.t1 MTR_1g040320 29.769 346 191 12 8 350 5 301 1.39e-23 103
MS.gene41583.t1 MTR_2g105330 26.158 367 236 13 12 367 3 345 9.44e-23 100
MS.gene41583.t1 MTR_7g114470 26.346 353 237 11 6 350 5 342 9.54e-23 100
MS.gene41583.t1 MTR_1g040315 28.617 311 192 10 19 321 16 304 1.11e-22 100
MS.gene41583.t1 MTR_2g064495 26.431 367 235 13 12 367 3 345 1.40e-22 100
MS.gene41583.t1 MTR_3g026950 24.634 410 255 18 20 409 10 385 2.61e-22 99.8
MS.gene41583.t1 MTR_3g112180 24.819 415 250 14 15 406 15 390 5.55e-22 98.6
MS.gene41583.t1 MTR_4g007540 26.738 374 226 14 12 367 3 346 1.13e-21 97.4
MS.gene41583.t1 MTR_3g049150 25.815 368 233 16 14 364 4 348 5.35e-20 92.8
MS.gene41583.t1 MTR_4g127650 28.045 353 219 12 11 348 9 341 5.53e-20 92.8
MS.gene41583.t1 MTR_4g097090 26.761 355 218 11 14 349 11 342 7.33e-19 89.4
MS.gene41583.t1 MTR_1g040195 25.062 403 264 12 70 463 41 414 2.66e-18 87.4
MS.gene41583.t1 MTR_7g086000 25.753 365 233 12 20 361 12 361 6.67e-18 86.3
MS.gene41583.t1 MTR_7g085930 26.790 377 232 19 19 371 13 369 7.33e-18 86.3
MS.gene41583.t1 MTR_7g085990 26.596 376 234 17 19 371 9 365 1.59e-16 82.0
MS.gene41583.t1 MTR_4g013050 24.302 358 219 10 20 374 12 320 4.18e-16 80.5
MS.gene41583.t1 MTR_0502s0010 28.502 207 128 7 152 350 44 238 9.00e-16 77.0
MS.gene41583.t1 MTR_7g084940 25.185 405 262 16 5 397 9 384 5.47e-15 77.4
MS.gene41583.t1 MTR_0042s0190 29.282 181 116 7 174 350 1 173 5.83e-14 72.8
MS.gene41583.t1 MTR_7g114510 24.516 310 216 8 156 463 8 301 1.35e-13 72.0
MS.gene41583.t1 MTR_7g056087 23.232 396 250 15 11 376 3 374 2.20e-13 72.4
MS.gene41583.t1 MTR_3g101960 26.335 281 174 9 71 336 69 331 9.69e-12 67.4
MS.gene41583.t1 MTR_3g102020 25.271 277 182 8 71 336 70 332 1.53e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41583.t1 AT5G07080 37.924 472 248 14 6 463 8 448 9.08e-88 276
MS.gene41583.t1 AT2G25150 37.945 477 265 12 1 467 1 456 2.83e-85 270
MS.gene41583.t1 AT2G23510 38.190 453 250 13 19 463 20 450 3.49e-83 264
MS.gene41583.t1 AT3G47170 35.881 471 266 12 12 463 12 465 9.61e-78 250
MS.gene41583.t1 AT1G28680 33.551 459 275 14 12 461 4 441 8.17e-69 226
MS.gene41583.t1 AT1G28680 35.657 373 215 12 12 375 4 360 2.73e-60 202
MS.gene41583.t1 AT3G62160 30.499 341 204 10 18 351 11 325 7.99e-37 140
MS.gene41583.t1 AT5G41040 28.763 372 237 12 8 370 29 381 3.48e-35 136
MS.gene41583.t1 AT5G41040 28.763 372 237 12 8 370 13 365 3.59e-35 136
MS.gene41583.t1 AT5G17540 28.000 375 247 10 8 375 5 363 7.95e-30 121
MS.gene41583.t1 AT3G03480 27.296 392 256 10 8 393 15 383 3.95e-29 119
MS.gene41583.t1 AT2G40230 28.173 394 255 12 12 397 5 378 1.71e-27 114
MS.gene41583.t1 AT3G48720 27.348 362 239 13 15 370 12 355 2.78e-26 110
MS.gene41583.t1 AT5G48930 27.717 368 242 14 10 371 1 350 3.13e-26 110
MS.gene41583.t1 AT1G03390 26.291 426 253 16 8 409 13 401 1.23e-25 109
MS.gene41583.t1 AT5G63560 27.151 372 237 14 8 370 5 351 7.68e-24 103
MS.gene41583.t1 AT1G27620 25.441 397 243 13 18 397 15 375 1.75e-21 97.1
MS.gene41583.t1 AT2G19070 26.464 461 288 18 20 457 12 444 1.37e-20 94.4
MS.gene41583.t1 AT1G24430 27.586 319 193 15 8 320 1 287 1.34e-18 88.2
MS.gene41583.t1 AT5G57840 27.778 378 227 19 10 369 1 350 7.52e-18 86.3
MS.gene41583.t1 AT1G65450 26.893 383 241 15 2 364 4 367 2.06e-17 84.7

Find 89 sgRNAs with CRISPR-Local

Find 157 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTTACCTAAAGGGTATTA+TGG 0.159161 3.1:-50224941 MS.gene41583:CDS
TCATTTCTAGCTTTAGGTTT+AGG 0.176003 3.1:+50226903 None:intergenic
AGGACGAAATTGAAGCTTTA+AGG 0.184665 3.1:-50224505 MS.gene41583:CDS
CATTTCTAGCTTTAGGTTTA+GGG 0.192317 3.1:+50226904 None:intergenic
ACAATACATGATTCTGATTC+AGG 0.214559 3.1:-50226758 MS.gene41583:CDS
TTGCTCTGAAGATTTGTAAT+TGG 0.242943 3.1:+50225338 None:intergenic
CCTTTCTTCTCTTCATTACT+TGG 0.251953 3.1:-50225515 MS.gene41583:CDS
TCATGATCATCAAGTTTATT+AGG 0.262038 3.1:+50224593 None:intergenic
CATCTTTCATTTCTAGCTTT+AGG 0.271621 3.1:+50226897 None:intergenic
GATTATTATTATCCTCTTGC+AGG 0.285447 3.1:-50226689 MS.gene41583:intron
AAGTTACCCTTTGGTATTCA+TGG 0.294628 3.1:-50225431 MS.gene41583:CDS
CACAAACTCAATAAACTCTT+TGG 0.315547 3.1:-50224798 MS.gene41583:CDS
CTTTGTGGCGGTTTCACAAT+TGG 0.320034 3.1:-50225397 MS.gene41583:CDS
GGTGTTGGTGGTGCAGAATA+TGG 0.338152 3.1:-50225571 MS.gene41583:CDS
GAATTCCCATAATACCCTTT+AGG 0.340816 3.1:+50224935 None:intergenic
CTTTACCTAAAGGGTATTAT+GGG 0.352647 3.1:-50224940 MS.gene41583:CDS
CATGCTATTTGTGACGCATT+TGG 0.353743 3.1:-50225361 MS.gene41583:CDS
TGCAATTAGCATATGCTTCT+AGG 0.353944 3.1:+50225539 None:intergenic
GGCGGTTTCACAATTGGAAT+GGG 0.359194 3.1:-50225391 MS.gene41583:CDS
TCTAAGTGAGTTGAGACATT+TGG 0.363120 3.1:-50224717 MS.gene41583:CDS
CTAAGTGAGTTGAGACATTT+GGG 0.370865 3.1:-50224716 MS.gene41583:CDS
TTCAGAGCAATTGTTGAACT+TGG 0.384460 3.1:-50225325 MS.gene41583:CDS
AACTTAGGCATAGCAGCAAC+AGG 0.385326 3.1:+50224530 None:intergenic
GTTTCTTCACTCGAAGTTGT+AGG 0.391217 3.1:-50224483 None:intergenic
AGAAGCGGTCTCAAAGGCTT+TGG 0.391560 3.1:-50226711 MS.gene41583:CDS
ATTATGATACTTTACCTAAA+GGG 0.409088 3.1:-50224949 MS.gene41583:CDS
TGCTGCTATGCCTAAGTTCA+AGG 0.415385 3.1:-50224525 MS.gene41583:CDS
GCTTGATATTCCTTCTCCTA+TGG 0.424499 3.1:-50225458 MS.gene41583:CDS
TATGGATAAAAGTTACCCTT+TGG 0.431832 3.1:-50225440 MS.gene41583:CDS
TGTCAATGGAAGGAGGAGTT+AGG 0.442569 3.1:-50224568 MS.gene41583:CDS
GTGAAAATGCAACAGATTCT+CGG 0.449271 3.1:+50225206 None:intergenic
GGAAGACTTAGAGTCGAGTT+TGG 0.454551 3.1:-50225592 MS.gene41583:CDS
TCAATTTCGTCCTTGAACTT+AGG 0.461185 3.1:+50224515 None:intergenic
TTGGAAACGAATCAAGAAGA+TGG 0.466104 3.1:-50224779 MS.gene41583:CDS
TGGCGGTTTCACAATTGGAA+TGG 0.467227 3.1:-50225392 MS.gene41583:CDS
TCCCACACAGGTTTCACTGA+TGG 0.471401 3.1:+50225286 None:intergenic
TGCAACAGATTCTCGGTCAG+TGG 0.476338 3.1:+50225213 None:intergenic
CCAAGCATCTTGCATGGTGC+AGG 0.480198 3.1:+50224644 None:intergenic
AAGTTGCGTCTAATACCAAC+TGG 0.480983 3.1:+50224977 None:intergenic
GATTATGATACTTTACCTAA+AGG 0.489847 3.1:-50224950 MS.gene41583:CDS
CCAAGTAATGAAGAGAAGAA+AGG 0.491172 3.1:+50225515 None:intergenic
TGGTATTAGACGCAACTTGA+AGG 0.491366 3.1:-50224972 MS.gene41583:CDS
CTCGGTCAGTGGGACATTGT+GGG 0.504074 3.1:+50225224 None:intergenic
AGCATGGAATTGGAAGATAG+TGG 0.504909 3.1:-50224752 MS.gene41583:CDS
GCAATTGTTGAACTTGGAAG+AGG 0.508018 3.1:-50225319 MS.gene41583:CDS
CAAGTAATGAAGAGAAGAAA+GGG 0.508480 3.1:+50225516 None:intergenic
TTAGCATATGCTTCTAGGAA+TGG 0.521867 3.1:+50225544 None:intergenic
CTTAGAGTCGAGTTTGGTGT+TGG 0.525295 3.1:-50225586 MS.gene41583:CDS
TCTCGGTCAGTGGGACATTG+TGG 0.526038 3.1:+50225223 None:intergenic
CCTGCACCATGCAAGATGCT+TGG 0.531684 3.1:-50224644 MS.gene41583:CDS
AGCTTAACAATTTCATAGAG+TGG 0.539783 3.1:+50224863 None:intergenic
GGAAGATAGTGGTGCACTAA+CGG 0.541116 3.1:-50224741 MS.gene41583:CDS
ATTTCTAGCTTTAGGTTTAG+GGG 0.543168 3.1:+50226905 None:intergenic
ATGGTGACAAAATTTCTTTG+TGG 0.543302 3.1:-50225412 MS.gene41583:CDS
CACAGAAATTGCAAAAGACT+TGG 0.546007 3.1:-50225482 MS.gene41583:CDS
GACAGAGAAAGAATACAAGA+AGG 0.550104 3.1:+50226845 None:intergenic
AGAGTCGAGTTTGGTGTTGG+TGG 0.551439 3.1:-50225583 MS.gene41583:CDS
TTGTCACCATGAATACCAAA+GGG 0.551952 3.1:+50225425 None:intergenic
GCGGTTTCACAATTGGAATG+GGG 0.553602 3.1:-50225390 MS.gene41583:CDS
TGATGATCATGATCTGTCAA+TGG 0.555180 3.1:-50224582 MS.gene41583:CDS
GCCTTAAAACTTAACAGCAA+TGG 0.564131 3.1:-50225019 MS.gene41583:CDS
TTTGTCACCATGAATACCAA+AGG 0.565547 3.1:+50225424 None:intergenic
TCAGTGGGACATTGTGGGAA+AGG 0.570113 3.1:+50225229 None:intergenic
TTTACAAGTATACCTGCAAG+AGG 0.571753 3.1:+50226677 None:intergenic
AAGTGCTTGCAGGTTATGTG+TGG 0.575180 3.1:-50225057 MS.gene41583:CDS
AATCATGTATTGTTGATGAC+CGG 0.576588 3.1:+50226768 None:intergenic
CTAGTGAAACATGCTGGTGA+TGG 0.577908 3.1:-50225613 MS.gene41583:CDS
CAAGAAGGAATAGACTTGGA+TGG 0.586286 3.1:+50226860 None:intergenic
GCGTCTAATACCAACTGGAA+TGG 0.590884 3.1:+50224982 None:intergenic
GCAACAGATTCTCGGTCAGT+GGG 0.591813 3.1:+50225214 None:intergenic
ATTCAAAGAAGCGGTCTCAA+AGG 0.594281 3.1:-50226717 MS.gene41583:CDS
AATACAAGAAGGAATAGACT+TGG 0.595657 3.1:+50226856 None:intergenic
GTGACAAAATTTCTTTGTGG+CGG 0.608273 3.1:-50225409 MS.gene41583:CDS
ATGAGAAAATACACGTATCG+AGG 0.609004 3.1:+50224618 None:intergenic
CGGTTTCACAATTGGAATGG+GGG 0.610007 3.1:-50225389 MS.gene41583:CDS
GGTAGACTAGTGAAACATGC+TGG 0.615068 3.1:-50225619 MS.gene41583:CDS
TTGTCATGTATTCAAAGAAG+CGG 0.616564 3.1:-50226726 MS.gene41583:CDS
GTTTGTGACATAATCAGCAG+TGG 0.618396 3.1:+50224814 None:intergenic
TGCTTGCAGGTTATGTGTGG+AGG 0.634525 3.1:-50225054 MS.gene41583:CDS
GCTTCTTTGAATACATGACA+AGG 0.645628 3.1:+50226728 None:intergenic
TGAGAAAATACACGTATCGA+GGG 0.645992 3.1:+50224619 None:intergenic
GATCATGATCTGTCAATGGA+AGG 0.648767 3.1:-50224578 MS.gene41583:CDS
AGGGTGCCAAGCATCTTGCA+TGG 0.649943 3.1:+50224638 None:intergenic
CATGATCTGTCAATGGAAGG+AGG 0.651977 3.1:-50224575 MS.gene41583:CDS
ACAGTGTTGACCATTCCAGT+TGG 0.658221 3.1:-50224992 MS.gene41583:CDS
ACTTAGGCATAGCAGCAACA+GGG 0.673752 3.1:+50224531 None:intergenic
CTTCTTTGAATACATGACAA+GGG 0.683868 3.1:+50226729 None:intergenic
AGCCATCAGTGAAACCTGTG+TGG 0.685980 3.1:-50225288 MS.gene41583:CDS
GCCATCAGTGAAACCTGTGT+GGG 0.717270 3.1:-50225287 MS.gene41583:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGAATAAAAATGAAAAAAT+AGG - chr3.1:50226313-50226332 MS.gene41583:intron 10.0%
!! TGAATAAAAATGAAAAAATA+GGG - chr3.1:50226314-50226333 MS.gene41583:intron 10.0%
!! AATTGATAAAGGAAAAAAAT+TGG - chr3.1:50225095-50225114 MS.gene41583:CDS 15.0%
!! CAATTCAAATGTTAAAATAA+AGG + chr3.1:50225572-50225591 None:intergenic 15.0%
!! GAAAACTAAAATAAACATAA+GGG - chr3.1:50225533-50225552 MS.gene41583:CDS 15.0%
!! TGAAAACTAAAATAAACATA+AGG - chr3.1:50225532-50225551 MS.gene41583:CDS 15.0%
!!! TTAATTTTTTGTTACATTGT+TGG + chr3.1:50224953-50224972 None:intergenic 15.0%
!!! TTGAAACTTTTAAAACATAA+GGG + chr3.1:50225214-50225233 None:intergenic 15.0%
!! ATTATGATACTTTACCTAAA+GGG - chr3.1:50226458-50226477 MS.gene41583:intron 20.0%
!! GAAAACTAAAATAAACACAA+GGG + chr3.1:50225183-50225202 None:intergenic 20.0%
!! GTTACACTTTAAATTGATAA+AGG - chr3.1:50225084-50225103 MS.gene41583:CDS 20.0%
!! TATAATGATTAGCAAAAACA+CGG - chr3.1:50224763-50224782 MS.gene41583:CDS 20.0%
!! TGAAAACTAAAATAAACACA+AGG + chr3.1:50225184-50225203 None:intergenic 20.0%
!! TGTCATTGAAATAAATATCA+TGG + chr3.1:50224930-50224949 None:intergenic 20.0%
!! TTATTTGTATTGAAAGTTGA+TGG - chr3.1:50225616-50225635 MS.gene41583:CDS 20.0%
!! TTGAAACTTGTAAAATGTAA+GGG - chr3.1:50225473-50225492 MS.gene41583:CDS 20.0%
!!! ACGTTTTAAAAGTTTCAAAT+TGG - chr3.1:50225245-50225264 MS.gene41583:CDS 20.0%
!!! AGTATTATTTTGATTCACAA+AGG + chr3.1:50226227-50226246 None:intergenic 20.0%
!!! ATGTTTTAAAAGTTTCAAGT+TGG - chr3.1:50225216-50225235 MS.gene41583:CDS 20.0%
!!! ATGTTTTAAAAGTTTCAAGT+TGG + chr3.1:50225235-50225216 None:intergenic 20.0%
!!! CAATATTGTTTTAAAGTAGA+GGG - chr3.1:50226259-50226278 MS.gene41583:intron 20.0%
!!! CAGGAAAATATAATTTTTGA+AGG - chr3.1:50226718-50226737 MS.gene41583:CDS 20.0%
!!! CTTGAAACTTTTAAAACATA+AGG + chr3.1:50225215-50225234 None:intergenic 20.0%
!!! GTATTATTTTGATTCACAAA+GGG + chr3.1:50226226-50226245 None:intergenic 20.0%
!!! GTTTATTTTAGTTTTCAAGT+TGG - chr3.1:50225187-50225206 MS.gene41583:CDS 20.0%
!!! GTTTATTTTAGTTTTCAAGT+TGG + chr3.1:50225206-50225187 None:intergenic 20.0%
!!! GTTTGTTACACTTTTATTTT+AGG - chr3.1:50225139-50225158 MS.gene41583:CDS 20.0%
!!! TTGAAACTTTTAAAACATGA+AGG - chr3.1:50225502-50225521 MS.gene41583:CDS 20.0%
!!! TTGAAACTTTTAAAACGTAA+GGG + chr3.1:50225243-50225262 None:intergenic 20.0%
!!! TTTGAAACTTTTAAAACGTA+AGG + chr3.1:50225244-50225263 None:intergenic 20.0%
! ATTACAGAAAACGTTGTTTA+AGG - chr3.1:50225012-50225031 MS.gene41583:CDS 25.0%
! CAACGTATGAAAATTATGAA+AGG - chr3.1:50224824-50224843 MS.gene41583:CDS 25.0%
! CTTGAAACTTGTAAAATGTA+AGG - chr3.1:50225472-50225491 MS.gene41583:CDS 25.0%
! GATTATGATACTTTACCTAA+AGG - chr3.1:50226457-50226476 MS.gene41583:intron 25.0%
! GGATCTTTAAATTTAAGTGA+CGG - chr3.1:50225407-50225426 MS.gene41583:CDS 25.0%
! GTCACTTAAATTTAAAGATC+CGG + chr3.1:50225408-50225427 None:intergenic 25.0%
! TCACTTAAATTTAAAGATCC+GGG + chr3.1:50225407-50225426 None:intergenic 25.0%
! TCATGATCATCAAGTTTATT+AGG + chr3.1:50226817-50226836 None:intergenic 25.0%
! TCTGTAATAAAGATTGTTGT+TGG + chr3.1:50225000-50225019 None:intergenic 25.0%
! TTACAGAAAACGTTGTTTAA+GGG - chr3.1:50225013-50225032 MS.gene41583:CDS 25.0%
!!! AATAACTGCTTTCAGTTTTT+TGG + chr3.1:50225668-50225687 None:intergenic 25.0%
!!! ACATTTTACAAGTTTCAAGT+TGG + chr3.1:50225471-50225490 None:intergenic 25.0%
!!! ATAACTGCTTTCAGTTTTTT+GGG + chr3.1:50225667-50225686 None:intergenic 25.0%
!!! GCAATATTGTTTTAAAGTAG+AGG - chr3.1:50226258-50226277 MS.gene41583:intron 25.0%
AATACAAGAAGGAATAGACT+TGG + chr3.1:50224554-50224573 None:intergenic 30.0%
ACAATACATGATTCTGATTC+AGG - chr3.1:50224649-50224668 MS.gene41583:CDS 30.0%
AGCTTAACAATTTCATAGAG+TGG + chr3.1:50226547-50226566 None:intergenic 30.0%
ATGGTGACAAAATTTCTTTG+TGG - chr3.1:50225995-50226014 MS.gene41583:intron 30.0%
CAAGTAATGAAGAGAAGAAA+GGG + chr3.1:50225894-50225913 None:intergenic 30.0%
CACAAACTCAATAAACTCTT+TGG - chr3.1:50226609-50226628 MS.gene41583:intron 30.0%
CTTCTTTGAATACATGACAA+GGG + chr3.1:50224681-50224700 None:intergenic 30.0%
GATTATTATTATCCTCTTGC+AGG - chr3.1:50224718-50224737 MS.gene41583:CDS 30.0%
TATGGATAAAAGTTACCCTT+TGG - chr3.1:50225967-50225986 MS.gene41583:intron 30.0%
TTAAACTCAATATCATGTCG+CGG + chr3.1:50225309-50225328 None:intergenic 30.0%
TTCTAACATGAGTAACGTTT+AGG - chr3.1:50225444-50225463 MS.gene41583:CDS 30.0%
TTGTCATGTATTCAAAGAAG+CGG - chr3.1:50224681-50224700 MS.gene41583:CDS 30.0%
! AAAGGGTAACTTTTATCCAT+AGG + chr3.1:50225968-50225987 None:intergenic 30.0%
! TAACTTTTATCCATAGGAGA+AGG + chr3.1:50225962-50225981 None:intergenic 30.0%
!! AATCATGTATTGTTGATGAC+CGG + chr3.1:50224642-50224661 None:intergenic 30.0%
!! ACCATTGCTGTTAAGTTTTA+AGG + chr3.1:50226392-50226411 None:intergenic 30.0%
!! ACTTTACCTAAAGGGTATTA+TGG - chr3.1:50226466-50226485 MS.gene41583:intron 30.0%
!! ATTTCTAGCTTTAGGTTTAG+GGG + chr3.1:50224505-50224524 None:intergenic 30.0%
!! CATCTTTCATTTCTAGCTTT+AGG + chr3.1:50224513-50224532 None:intergenic 30.0%
!! CATTTCTAGCTTTAGGTTTA+GGG + chr3.1:50224506-50224525 None:intergenic 30.0%
!! CTTTACCTAAAGGGTATTAT+GGG - chr3.1:50226467-50226486 MS.gene41583:intron 30.0%
!! GTCATTTTGTTCATGTATAC+CGG - chr3.1:50224620-50224639 MS.gene41583:CDS 30.0%
!! TCATTTCTAGCTTTAGGTTT+AGG + chr3.1:50224507-50224526 None:intergenic 30.0%
!! TTGCTCTGAAGATTTGTAAT+TGG + chr3.1:50226072-50226091 None:intergenic 30.0%
AAGTTACCCTTTGGTATTCA+TGG - chr3.1:50225976-50225995 MS.gene41583:intron 35.0%
AATAAAAAGAGCGGAAAGAC+GGG + chr3.1:50224800-50224819 None:intergenic 35.0%
AGGACGAAATTGAAGCTTTA+AGG - chr3.1:50226902-50226921 MS.gene41583:CDS 35.0%
ATGAGAAAATACACGTATCG+AGG + chr3.1:50226792-50226811 None:intergenic 35.0%
CAATAAAAAGAGCGGAAAGA+CGG + chr3.1:50224801-50224820 None:intergenic 35.0%
CACAGAAATTGCAAAAGACT+TGG - chr3.1:50225925-50225944 MS.gene41583:intron 35.0%
CCAAGTAATGAAGAGAAGAA+AGG + chr3.1:50225895-50225914 None:intergenic 35.0%
CCTTTCTTCTCTTCATTACT+TGG - chr3.1:50225892-50225911 MS.gene41583:intron 35.0%
GAATTCCCATAATACCCTTT+AGG + chr3.1:50226475-50226494 None:intergenic 35.0%
GACAGAGAAAGAATACAAGA+AGG + chr3.1:50224565-50224584 None:intergenic 35.0%
GCCTTAAAACTTAACAGCAA+TGG - chr3.1:50226388-50226407 MS.gene41583:intron 35.0%
GCTTCTTTGAATACATGACA+AGG + chr3.1:50224682-50224701 None:intergenic 35.0%
GTGAAAATGCAACAGATTCT+CGG + chr3.1:50226204-50226223 None:intergenic 35.0%
GTGACAAAATTTCTTTGTGG+CGG - chr3.1:50225998-50226017 MS.gene41583:intron 35.0%
TCAATTTCGTCCTTGAACTT+AGG + chr3.1:50226895-50226914 None:intergenic 35.0%
TGAGAAAATACACGTATCGA+GGG + chr3.1:50226791-50226810 None:intergenic 35.0%
TGATGATCATGATCTGTCAA+TGG - chr3.1:50226825-50226844 MS.gene41583:CDS 35.0%
TGCAATTAGCATATGCTTCT+AGG + chr3.1:50225871-50225890 None:intergenic 35.0%
TGGGAAAGAGAAAAACAAGT+TGG - chr3.1:50226139-50226158 MS.gene41583:intron 35.0%
TTCAGAGCAATTGTTGAACT+TGG - chr3.1:50226082-50226101 MS.gene41583:intron 35.0%
TTGGAAACGAATCAAGAAGA+TGG - chr3.1:50226628-50226647 MS.gene41583:intron 35.0%
TTGTCACCATGAATACCAAA+GGG + chr3.1:50225985-50226004 None:intergenic 35.0%
TTTACAAGTATACCTGCAAG+AGG + chr3.1:50224733-50224752 None:intergenic 35.0%
TTTGTCACCATGAATACCAA+AGG + chr3.1:50225986-50226005 None:intergenic 35.0%
! CTAAGTGAGTTGAGACATTT+GGG - chr3.1:50226691-50226710 MS.gene41583:CDS 35.0%
! TCTAAGTGAGTTGAGACATT+TGG - chr3.1:50226690-50226709 MS.gene41583:CDS 35.0%
! TTAGCATATGCTTCTAGGAA+TGG + chr3.1:50225866-50225885 None:intergenic 35.0%
!!! AGATGGTTTTAGCATGGAAT+TGG - chr3.1:50226645-50226664 MS.gene41583:intron 35.0%
!!! TCAAGAAGATGGTTTTAGCA+TGG - chr3.1:50226639-50226658 MS.gene41583:intron 35.0%
AAGTTGCGTCTAATACCAAC+TGG + chr3.1:50226433-50226452 None:intergenic 40.0%
AGCATGGAATTGGAAGATAG+TGG - chr3.1:50226655-50226674 MS.gene41583:intron 40.0%
ATTCAAAGAAGCGGTCTCAA+AGG - chr3.1:50224690-50224709 MS.gene41583:CDS 40.0%
CAAGAAGGAATAGACTTGGA+TGG + chr3.1:50224550-50224569 None:intergenic 40.0%
CGTTGTCGCAATAAAAAGAG+CGG + chr3.1:50224809-50224828 None:intergenic 40.0%
GATCATGATCTGTCAATGGA+AGG - chr3.1:50226829-50226848 MS.gene41583:CDS 40.0%
GCAATTGTTGAACTTGGAAG+AGG - chr3.1:50226088-50226107 MS.gene41583:intron 40.0%
GCTTGATATTCCTTCTCCTA+TGG - chr3.1:50225949-50225968 MS.gene41583:intron 40.0%
GTTCAAAACGTTACTCACGT+TGG - chr3.1:50225267-50225286 MS.gene41583:CDS 40.0%
GTTTGTGACATAATCAGCAG+TGG + chr3.1:50226596-50226615 None:intergenic 40.0%
TGGTATTAGACGCAACTTGA+AGG - chr3.1:50226435-50226454 MS.gene41583:intron 40.0%
! AAAGATCCGGGTTGACAATA+TGG + chr3.1:50225395-50225414 None:intergenic 40.0%
! AAGATCCGGGTTGACAATAT+GGG + chr3.1:50225394-50225413 None:intergenic 40.0%
! CATGCTATTTGTGACGCATT+TGG - chr3.1:50226046-50226065 MS.gene41583:intron 40.0%
! CATGTTTCACTAGTCTACCT+GGG + chr3.1:50225787-50225806 None:intergenic 40.0%
! TGTTTTTCTCTTTCCCACAC+AGG + chr3.1:50226136-50226155 None:intergenic 40.0%
!! GAAGTGAGATGTTGGTTTAG+TGG + chr3.1:50225760-50225779 None:intergenic 40.0%
!! GTTGAGACATTTGGGTTTTC+AGG - chr3.1:50226699-50226718 MS.gene41583:CDS 40.0%
!!! ACAACTTTTGAAGTGCTTGC+AGG - chr3.1:50226340-50226359 MS.gene41583:intron 40.0%
!!! CTGCTTTCAGTTTTTTGGGT+TGG + chr3.1:50225663-50225682 None:intergenic 40.0%
AACATCTCACTTCGTTTCCC+AGG - chr3.1:50225767-50225786 MS.gene41583:intron 45.0%
AACTTAGGCATAGCAGCAAC+AGG + chr3.1:50226880-50226899 None:intergenic 45.0%
AAGTGCTTGCAGGTTATGTG+TGG - chr3.1:50226350-50226369 MS.gene41583:intron 45.0%
ACTCAATATCATGTCGCGGA+AGG + chr3.1:50225305-50225324 None:intergenic 45.0%
ACTTAGGCATAGCAGCAACA+GGG + chr3.1:50226879-50226898 None:intergenic 45.0%
CATCACCCATATTGTCAACC+CGG - chr3.1:50225386-50225405 MS.gene41583:CDS 45.0%
CATGATCTGTCAATGGAAGG+AGG - chr3.1:50226832-50226851 MS.gene41583:CDS 45.0%
CGGTTTCACAATTGGAATGG+GGG - chr3.1:50226018-50226037 MS.gene41583:intron 45.0%
CTAGTGAAACATGCTGGTGA+TGG - chr3.1:50225794-50225813 MS.gene41583:intron 45.0%
CTCAATATCATGTCGCGGAA+GGG + chr3.1:50225304-50225323 None:intergenic 45.0%
CTTTGTGGCGGTTTCACAAT+TGG - chr3.1:50226010-50226029 MS.gene41583:intron 45.0%
GCGGTTTCACAATTGGAATG+GGG - chr3.1:50226017-50226036 MS.gene41583:intron 45.0%
GCGTCTAATACCAACTGGAA+TGG + chr3.1:50226428-50226447 None:intergenic 45.0%
GGAAGACTTAGAGTCGAGTT+TGG - chr3.1:50225815-50225834 MS.gene41583:intron 45.0%
GGCGGTTTCACAATTGGAAT+GGG - chr3.1:50226016-50226035 MS.gene41583:intron 45.0%
GGTAGACTAGTGAAACATGC+TGG - chr3.1:50225788-50225807 MS.gene41583:intron 45.0%
TGCTGCTATGCCTAAGTTCA+AGG - chr3.1:50226882-50226901 MS.gene41583:CDS 45.0%
TGGCGGTTTCACAATTGGAA+TGG - chr3.1:50226015-50226034 MS.gene41583:intron 45.0%
TGGGAAACGAAGTGAGATGT+TGG + chr3.1:50225768-50225787 None:intergenic 45.0%
TGTCAATGGAAGGAGGAGTT+AGG - chr3.1:50226839-50226858 MS.gene41583:CDS 45.0%
! GCATGTTTCACTAGTCTACC+TGG + chr3.1:50225788-50225807 None:intergenic 45.0%
! GGAAGATAGTGGTGCACTAA+CGG - chr3.1:50226666-50226685 MS.gene41583:intron 45.0%
!! ACAGTGTTGACCATTCCAGT+TGG - chr3.1:50226415-50226434 MS.gene41583:intron 45.0%
!! CTTAGAGTCGAGTTTGGTGT+TGG - chr3.1:50225821-50225840 MS.gene41583:intron 45.0%
AGAAGCGGTCTCAAAGGCTT+TGG - chr3.1:50224696-50224715 MS.gene41583:CDS 50.0%
AGCCATCAGTGAAACCTGTG+TGG - chr3.1:50226119-50226138 MS.gene41583:intron 50.0%
GCAACAGATTCTCGGTCAGT+GGG + chr3.1:50226196-50226215 None:intergenic 50.0%
GCCATCAGTGAAACCTGTGT+GGG - chr3.1:50226120-50226139 MS.gene41583:intron 50.0%
TCAGTGGGACATTGTGGGAA+AGG + chr3.1:50226181-50226200 None:intergenic 50.0%
TCCCACACAGGTTTCACTGA+TGG + chr3.1:50226124-50226143 None:intergenic 50.0%
TGCAACAGATTCTCGGTCAG+TGG + chr3.1:50226197-50226216 None:intergenic 50.0%
TGCTTGCAGGTTATGTGTGG+AGG - chr3.1:50226353-50226372 MS.gene41583:intron 50.0%
! CGGGTTGACAATATGGGTGA+TGG + chr3.1:50225388-50225407 None:intergenic 50.0%
!! AGAGTCGAGTTTGGTGTTGG+TGG - chr3.1:50225824-50225843 MS.gene41583:intron 50.0%
!! GGTGTTGGTGGTGCAGAATA+TGG - chr3.1:50225836-50225855 MS.gene41583:intron 50.0%
CCAAGCATCTTGCATGGTGC+AGG + chr3.1:50226766-50226785 None:intergenic 55.0%
CCTGCACCATGCAAGATGCT+TGG - chr3.1:50226763-50226782 MS.gene41583:CDS 55.0%
CTCGGTCAGTGGGACATTGT+GGG + chr3.1:50226186-50226205 None:intergenic 55.0%
TCTCGGTCAGTGGGACATTG+TGG + chr3.1:50226187-50226206 None:intergenic 55.0%
! AGGGTGCCAAGCATCTTGCA+TGG + chr3.1:50226772-50226791 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 50224484 50226945 50224484 ID=MS.gene41583
chr3.1 mRNA 50224484 50226945 50224484 ID=MS.gene41583.t1;Parent=MS.gene41583
chr3.1 exon 50226690 50226945 50226690 ID=MS.gene41583.t1.exon1;Parent=MS.gene41583.t1
chr3.1 CDS 50226690 50226945 50226690 ID=cds.MS.gene41583.t1;Parent=MS.gene41583.t1
chr3.1 exon 50224484 50225640 50224484 ID=MS.gene41583.t1.exon2;Parent=MS.gene41583.t1
chr3.1 CDS 50224484 50225640 50224484 ID=cds.MS.gene41583.t1;Parent=MS.gene41583.t1
Gene Sequence

>MS.gene41583

ATGGCGTATCAGAAAGCACCCCTAAACCTAAAGCTAGAAATGAAAGATGTTGTGCTTGTAAAACCATCCAAGTCTATTCCTTCTTGTATTCTTTCTCTGTCTACACTTGACAATATAGACATAAATAATAATCTTTGTCATTTTGTTCATGTATACCGGTCATCAACAATACATGATTCTGATTCAGGTTTTGACCCTTGTCATGTATTCAAAGAAGCGGTCTCAAAGGCTTTGGATTATTATTATCCTCTTGCAGGTATACTTGTAAAAAAGAAATCTTATAATGATTAGCAAAAACACGGACACTCACGTGCCCGTCTTTCCGCTCTTTTTATTGCGACAACGTATGAAAATTATGAAAGGTGTTTTTTTTTTCAAGAAATTTTGATTAAAAATAAAAATATAAATGTTTGTTGTTTTCAAGTTTTAACAAATCGAATTAACCATGATATTTATTTCAATGACACCAACAATGTAACAAAAAATTAATCTAAATTCATTTTTTTAATGACACCAACAACAATCTTTATTACAGAAAACGTTGTTTAAGGGAATGATTGAGATAATAAAAAAATAAGTATAGATATACTCATCTAGTTTGTTACACTTTAAATTGATAAAGGAAAAAAATTGGACATATATATATACATATCATGTTTGTTACACTTTTATTTTAGGCTTAATTGTATGTTTGATCCCTTGTGTTTATTTTAGTTTTCAAGTTGGTCCCTTATGTTTTAAAAGTTTCAAGTTGGTCCCTTACGTTTTAAAAGTTTCAAATTGGTTCAAAACGTTACTCACGTTGGAATAAGTTAGTCCCTTCCGCGACATGATATTGAGTTTAATAAAACAAAAAAATTAAAAAAATATTTTAAAACTGATTTTTTAAATAAGTTAAGTTCCATCACCCATATTGTCAACCCGGATCTTTAAATTTAAGTGACGGAAGTGACAAACTTATTCTAACATGAGTAACGTTTAGGACCAACTTGAAACTTGTAAAATGTAAGGGACCAACTTGAAACTTTTAAAACATGAAGGACCAACTTGAAAACTAAAATAAACATAAGGGATCAAACATTAAGCCTTTATTTTAACATTTGAATTGACTATTATTTATTTGTTGCATGTATTATTTGTATTGAAAGTTGATGGCATTTTTTAAAAGAGAAAAAACCAACCCAAAAAACTGAAAGCAGTTATTTTCTTTATATAAAGTATAGATAAATGTTACTAATGAATTGTTATAGCATAAATAAACAATGTTACTAAACCACTAAACCAACATCTCACTTCGTTTCCCAGGTAGACTAGTGAAACATGCTGGTGATGGAAGACTTAGAGTCGAGTTTGGTGTTGGTGGTGCAGAATATGGTGTTCCATTCCTAGAAGCATATGCTAATTGCACCCTTTCTTCTCTTCATTACTTGGACAATACTGACACAGAAATTGCAAAAGACTTGGTGCTTGATATTCCTTCTCCTATGGATAAAAGTTACCCTTTGGTATTCATGGTGACAAAATTTCTTTGTGGCGGTTTCACAATTGGAATGGGGGTGTCGCATGCTATTTGTGACGCATTTGGCCAATTACAAATCTTCAGAGCAATTGTTGAACTTGGAAGAGGAAGAACTGAGCCATCAGTGAAACCTGTGTGGGAAAGAGAAAAACAAGTTGGATCAATAGCTAAACAACCTTTCCCACAATGTCCCACTGACCGAGAATCTGTTGCATTTTCACCCTTTGTGAATCAAAATAATACTAAAAATATTAAGCAATATTGTTTTAAAGTAGAGGGTGAAATGATAACGAATCTTAAATTAAGTTTGATGAATAAAAATGAAAAAATAGGGTTCACAACTTTTGAAGTGCTTGCAGGTTATGTGTGGAGGTCAAGAGCAAGAGCCTTAAAACTTAACAGCAATGGTGAAACAGTGTTGACCATTCCAGTTGGTATTAGACGCAACTTGAAGGATTATGATACTTTACCTAAAGGGTATTATGGGAATTCTACTTTAGATGCAAATGTTGTTTTAAAAGTGAGTGAGCTCAACGAAATGCCACTCTATGAAATTGTTAAGCTGATTAAAGAGACTAAAAATATTGCTTCCACTGCTGATTATGTCACAAACTCAATAAACTCTTTGGAAACGAATCAAGAAGATGGTTTTAGCATGGAATTGGAAGATAGTGGTGCACTAACGGTTCTAAGTGAGTTGAGACATTTGGGTTTTCAGGAAAATATAATTTTTGAAGGCTATGAATTAGTGAATTTTTTACCTGCACCATGCAAGATGCTTGGCACCCTCGATACGTGTATTTTCTCATCTCCTAATAAACTTGATGATCATGATCTGTCAATGGAAGGAGGAGTTAGGATATTTACATCACTCCCTGTTGCTGCTATGCCTAAGTTCAAGGACGAAATTGAAGCTTTAAGGTTTCTTCACTCGAAGTTGTAG

Protein sequence

>MS.gene41583.t1

MAYQKAPLNLKLEMKDVVLVKPSKSIPSCILSLSTLDNIDINNNLCHFVHVYRSSTIHDSDSGFDPCHVFKEAVSKALDYYYPLAGRLVKHAGDGRLRVEFGVGGAEYGVPFLEAYANCTLSSLHYLDNTDTEIAKDLVLDIPSPMDKSYPLVFMVTKFLCGGFTIGMGVSHAICDAFGQLQIFRAIVELGRGRTEPSVKPVWEREKQVGSIAKQPFPQCPTDRESVAFSPFVNQNNTKNIKQYCFKVEGEMITNLKLSLMNKNEKIGFTTFEVLAGYVWRSRARALKLNSNGETVLTIPVGIRRNLKDYDTLPKGYYGNSTLDANVVLKVSELNEMPLYEIVKLIKETKNIASTADYVTNSINSLETNQEDGFSMELEDSGALTVLSELRHLGFQENIIFEGYELVNFLPAPCKMLGTLDTCIFSSPNKLDDHDLSMEGGVRIFTSLPVAAMPKFKDEIEALRFLHSKL