AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780039806.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780039806.01.T01 MTR_7g079530 97.287 258 6 1 1 258 1 257 0.0 516
MsG0780039806.01.T01 MTR_7g079530 98.165 218 3 1 1 218 1 217 4.73e-159 441
MsG0780039806.01.T02 MTR_7g079530 97.287 258 6 1 1 258 1 257 0.0 516
MsG0780039806.01.T02 MTR_7g079530 98.165 218 3 1 1 218 1 217 4.73e-159 441
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780039806.01.T01 AT1G79790 67.172 198 65 0 57 254 45 242 1.35e-102 298
MsG0780039806.01.T01 AT1G79790 59.641 223 65 1 57 254 45 267 8.61e-97 285
MsG0780039806.01.T01 AT1G79790 51.351 148 47 1 132 254 1 148 1.88e-49 160
MsG0780039806.01.T02 AT1G79790 67.172 198 65 0 57 254 45 242 1.35e-102 298
MsG0780039806.01.T02 AT1G79790 59.641 223 65 1 57 254 45 267 8.61e-97 285
MsG0780039806.01.T02 AT1G79790 51.351 148 47 1 132 254 1 148 1.88e-49 160

Find 16 sgRNAs with CRISPR-Local

Find 286 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTTTAACACGGTGAAAA+AGG 0.154614 7:-69276093 MsG0780039806.01.T01:three_prime_UTR
TTTCACCGTGTTAAAGAAAT+TGG 0.194130 7:+69276097 None:intergenic
GAAGGTTTAAGTCTATATTT+TGG 0.253511 7:-69276007 MsG0780039806.01.T01:three_prime_UTR
GTGTATAATTGAGATTTAAA+AGG 0.271035 7:-69275905 MsG0780039806.01.T01:intron
GTGTATAATTGAGATTTAAA+AGG 0.271035 7:-69275985 MsG0780039806.01.T01:intron
ATAATATACAATTAAGAATC+TGG 0.380270 7:+69276064 None:intergenic
ATTGAGCTTTGTTAAAATGA+AGG 0.413848 7:-69276025 MsG0780039806.01.T01:three_prime_UTR
TGCAAGCAGCAGCTGAAGTT+GGG 0.455154 7:-69276235 MsG0780039806.01.T01:CDS
GTGCAAGCAGCAGCTGAAGT+TGG 0.459723 7:-69276236 MsG0780039806.01.T01:CDS
AGCAGCTGAAGTTGGGATCA+AGG 0.467596 7:-69276228 MsG0780039806.01.T01:CDS
CGTGAAGAACTGTCATCGAT+GGG 0.536784 7:-69276176 MsG0780039806.01.T01:CDS
GCAGCTGAAGTTGGGATCAA+GGG 0.558512 7:-69276227 MsG0780039806.01.T01:CDS
GCGTGAAGAACTGTCATCGA+TGG 0.565370 7:-69276177 MsG0780039806.01.T01:CDS
ATACACCAATTTCTTTAACA+CGG 0.633429 7:-69276102 MsG0780039806.01.T01:three_prime_UTR
GTGAAGAACTGTCATCGATG+GGG 0.678950 7:-69276175 MsG0780039806.01.T01:CDS
TGAAGAACTGTCATCGATGG+GGG 0.686686 7:-69276174 MsG0780039806.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CCAAAAATATATAATTAAAT+TGG - Chr7:69275890-69275909 MsG0780039806.01.T01:three_prime_UTR 10.0%
!!! ATTAAGAAAAAAATAGATTT+TGG + Chr7:69277240-69277259 None:intergenic 10.0%
!!! CCAATTTAATTATATATTTT+TGG + Chr7:69275893-69275912 None:intergenic 10.0%
!!! TATTTATAAACAATTTTTGT+GGG + Chr7:69278633-69278652 None:intergenic 10.0%
!! ATAATATACAATTAAGAATC+TGG + Chr7:69280301-69280320 None:intergenic 15.0%
!! ATTGTTTATAAATAGATTCA+AGG - Chr7:69278639-69278658 MsG0780039806.01.T01:intron 15.0%
!! CAAAAAATCAATCATTTAAA+AGG + Chr7:69278930-69278949 None:intergenic 15.0%
!! TATGAATTTAAATTGCAATT+GGG - Chr7:69276441-69276460 MsG0780039806.01.T01:intron 15.0%
!! TTATGAATTTAAATTGCAAT+TGG - Chr7:69276440-69276459 MsG0780039806.01.T01:intron 15.0%
!! TTATGATATTATATCCTAAT+TGG - Chr7:69279633-69279652 MsG0780039806.01.T01:intron 15.0%
!! TTGTTTATAAATAGATTCAA+GGG - Chr7:69278640-69278659 MsG0780039806.01.T01:intron 15.0%
!! TTTATACATAACATGAAAAA+GGG + Chr7:69276402-69276421 None:intergenic 15.0%
!!! AAATGATTTTTTTAGCAAAA+TGG + Chr7:69277180-69277199 None:intergenic 15.0%
!!! ATTTATAAACAATTTTTGTG+GGG + Chr7:69278632-69278651 None:intergenic 15.0%
!!! CTATTTATAAACAATTTTTG+TGG + Chr7:69278634-69278653 None:intergenic 15.0%
!! AAAAAAAATCCAAAACAAAC+AGG + Chr7:69277082-69277101 None:intergenic 20.0%
!! AAAAAGAACTCATCATTTAA+AGG - Chr7:69279663-69279682 MsG0780039806.01.T01:intron 20.0%
!! AATAAGTTCATTAAAGTTTG+TGG + Chr7:69277498-69277517 None:intergenic 20.0%
!! AGCTATCAAAATATTTATCT+TGG - Chr7:69279537-69279556 MsG0780039806.01.T01:intron 20.0%
!! ATAAAGACAACAGTATATAT+TGG + Chr7:69279120-69279139 None:intergenic 20.0%
!! ATAAATGAGAAATTTGTACT+CGG + Chr7:69278134-69278153 None:intergenic 20.0%
!! ATGAATTTAAATTGCAATTG+GGG - Chr7:69276442-69276461 MsG0780039806.01.T01:intron 20.0%
!! CAATTCTTAGATTTATTTCA+AGG + Chr7:69277661-69277680 None:intergenic 20.0%
!! CTTTAATATGAATATGGATA+TGG + Chr7:69275977-69275996 None:intergenic 20.0%
!! CTTTATACATAACATGAAAA+AGG + Chr7:69276403-69276422 None:intergenic 20.0%
!! GTGTATAATTGAGATTTAAA+AGG - Chr7:69280377-69280396 MsG0780039806.01.T01:five_prime_UTR 20.0%
!! GTTAAAAAATGAAGATGATT+TGG - Chr7:69276768-69276787 MsG0780039806.01.T01:intron 20.0%
!! TACCATTATATTAAGAAGTT+TGG + Chr7:69277933-69277952 None:intergenic 20.0%
!! TATCAAAGTAGTTTATCATA+AGG - Chr7:69280061-69280080 MsG0780039806.01.T01:CDS 20.0%
!! TCTATGAAAATACAATATTC+TGG + Chr7:69279820-69279839 None:intergenic 20.0%
!! TTAAAACTTGTATGAGAAAT+GGG - Chr7:69279325-69279344 MsG0780039806.01.T01:intron 20.0%
!! TTCCAAACTTCTTAATATAA+TGG - Chr7:69277928-69277947 MsG0780039806.01.T01:intron 20.0%
!!! AAAAGTTCTAAGAAATTTGA+AGG + Chr7:69276511-69276530 None:intergenic 20.0%
!!! AATCTGTTTTATTTTCTTTC+AGG - Chr7:69276587-69276606 MsG0780039806.01.T01:CDS 20.0%
!!! AATGATGAGTTCTTTTTTTT+CGG + Chr7:69279660-69279679 None:intergenic 20.0%
!!! AATTCATTTTCTTACCATAT+AGG + Chr7:69279432-69279451 None:intergenic 20.0%
!!! ATTGTTTTCATCTAAATTCA+TGG + Chr7:69276012-69276031 None:intergenic 20.0%
!!! CTCAAAGTTATTTTTCTTTA+AGG + Chr7:69279388-69279407 None:intergenic 20.0%
!!! CTTTTACTAATTATCCTATA+TGG - Chr7:69279415-69279434 MsG0780039806.01.T01:intron 20.0%
!!! GTAAATGGTAATTATGTTTT+GGG - Chr7:69279036-69279055 MsG0780039806.01.T01:intron 20.0%
!!! TCTATTTTTTTCTTAATGCA+AGG - Chr7:69277243-69277262 MsG0780039806.01.T01:intron 20.0%
!!! TGAAATAGATTTTCATTTTG+AGG + Chr7:69277207-69277226 None:intergenic 20.0%
!!! TGTAAATGGTAATTATGTTT+TGG - Chr7:69279035-69279054 MsG0780039806.01.T01:intron 20.0%
!!! TTCATTTCTACAACTATTTT+GGG + Chr7:69276984-69277003 None:intergenic 20.0%
!!! TTGTTTTCATCTAAATTCAT+GGG + Chr7:69276011-69276030 None:intergenic 20.0%
!!! TTTAAGTAATTTGTTGTTGT+TGG + Chr7:69276114-69276133 None:intergenic 20.0%
!!! TTTCATTTCTACAACTATTT+TGG + Chr7:69276985-69277004 None:intergenic 20.0%
!!! TTTTATGTGCTAATTGAAAT+AGG - Chr7:69279165-69279184 MsG0780039806.01.T01:intron 20.0%
!!! TTTTTGCTAAAAAAGTGTTA+TGG - Chr7:69276874-69276893 MsG0780039806.01.T01:intron 20.0%
! ACAGTATATATTGGAAAATG+AGG + Chr7:69279111-69279130 None:intergenic 25.0%
! AGATAGTTAGATCTCAAATA+TGG + Chr7:69278497-69278516 None:intergenic 25.0%
! AGATTATACAAAATCAGCAA+GGG + Chr7:69278258-69278277 None:intergenic 25.0%
! AGCTCACTTTAATATGAATA+TGG + Chr7:69275983-69276002 None:intergenic 25.0%
! AGGGTTATAAAAAAGAATGA+AGG + Chr7:69278542-69278561 None:intergenic 25.0%
! ATACACCAATTTCTTTAACA+CGG - Chr7:69280260-69280279 MsG0780039806.01.T01:CDS 25.0%
! ATGATGTCAAATAACAGAAT+TGG + Chr7:69276201-69276220 None:intergenic 25.0%
! ATTCACATAGACAAAGATAT+GGG - Chr7:69277056-69277075 MsG0780039806.01.T01:intron 25.0%
! CTTAAAACTTGTATGAGAAA+TGG - Chr7:69279324-69279343 MsG0780039806.01.T01:intron 25.0%
! GAATAATAGGAATTTACCAT+AGG + Chr7:69278758-69278777 None:intergenic 25.0%
! GATAAACTACTTTGATAAGT+TGG + Chr7:69280058-69280077 None:intergenic 25.0%
! GATAGTTAGATCTCAAATAT+GGG + Chr7:69278496-69278515 None:intergenic 25.0%
! GATGAAAACAATTGCAAAAA+TGG - Chr7:69276020-69276039 MsG0780039806.01.T01:three_prime_UTR 25.0%
! TAAATGAGAAATTTGTACTC+GGG + Chr7:69278133-69278152 None:intergenic 25.0%
! TACTGTTTCAATTAATCAAG+TGG + Chr7:69277460-69277479 None:intergenic 25.0%
! TAGATTATACAAAATCAGCA+AGG + Chr7:69278259-69278278 None:intergenic 25.0%
! TATATAGTTATTGTCTTCTC+AGG - Chr7:69280094-69280113 MsG0780039806.01.T01:CDS 25.0%
! TATGAATATGGATATGGATA+TGG + Chr7:69275971-69275990 None:intergenic 25.0%
! TTAGTATTTGATCTTATGTG+TGG - Chr7:69276699-69276718 MsG0780039806.01.T01:intron 25.0%
! TTCCTGAAACACAATAAAAA+TGG + Chr7:69279741-69279760 None:intergenic 25.0%
! TTCTTAGATTTATTTCAAGG+TGG + Chr7:69277658-69277677 None:intergenic 25.0%
! TTGTAAATTAGAGTCCAAAT+AGG + Chr7:69275937-69275956 None:intergenic 25.0%
!! AAAAAATGAAGATGATTTGG+AGG - Chr7:69276771-69276790 MsG0780039806.01.T01:intron 25.0%
!! AAATGGCTCTATAATATTCA+AGG + Chr7:69279724-69279743 None:intergenic 25.0%
!! AAGTTTTCTGTTTGTGTTTT+TGG + Chr7:69276178-69276197 None:intergenic 25.0%
!! AATTCTGTTATTTGACATCA+TGG - Chr7:69276200-69276219 MsG0780039806.01.T01:CDS 25.0%
!! AGTTTTCTGTTTGTGTTTTT+GGG + Chr7:69276177-69276196 None:intergenic 25.0%
!! ATCATGGATTGAATTTGAAA+AGG - Chr7:69276311-69276330 MsG0780039806.01.T01:intron 25.0%
!! ATTGTATTTTCATAGATGAC+AGG - Chr7:69279824-69279843 MsG0780039806.01.T01:intron 25.0%
!! CATTTCTCATACAAGTTTTA+AGG + Chr7:69279326-69279345 None:intergenic 25.0%
!! GAAGGTTTAAGTCTATATTT+TGG - Chr7:69280355-69280374 MsG0780039806.01.T01:intron 25.0%
!! GAATTTTCTATTGCAATATC+TGG - Chr7:69279447-69279466 MsG0780039806.01.T01:intron 25.0%
!! TACGTAATATTTTGTACTGT+AGG - Chr7:69279489-69279508 MsG0780039806.01.T01:intron 25.0%
!! TCATGGATTGAATTTGAAAA+GGG - Chr7:69276312-69276331 MsG0780039806.01.T01:intron 25.0%
!! TTCGCTTAAAGATTTTCATA+AGG + Chr7:69278866-69278885 None:intergenic 25.0%
!! TTGGGTTGTTATTAACATTA+AGG - Chr7:69279054-69279073 MsG0780039806.01.T01:intron 25.0%
!!! AAAGTTTTTTAAGGATGGAA+GGG - Chr7:69276623-69276642 MsG0780039806.01.T01:intron 25.0%
!!! ATTGAGCTTTGTTAAAATGA+AGG - Chr7:69280337-69280356 MsG0780039806.01.T01:CDS 25.0%
!!! GAAAGAAAGTTTTTTAAGGA+TGG - Chr7:69276618-69276637 MsG0780039806.01.T01:intron 25.0%
!!! GCTAGAAAGAAAGTTTTTTA+AGG - Chr7:69276614-69276633 MsG0780039806.01.T01:intron 25.0%
AAAAAGCTGATGAACACAAA+AGG + Chr7:69279607-69279626 None:intergenic 30.0%
AAAGACATTCCAAAGAATTC+TGG + Chr7:69276261-69276280 None:intergenic 30.0%
AAAGACATTCCAGAATTCTT+TGG - Chr7:69276249-69276268 MsG0780039806.01.T01:CDS 30.0%
AAATAGGAACAACTAAGGTA+GGG + Chr7:69275921-69275940 None:intergenic 30.0%
AACTTCTGTTAATCCAATAC+AGG - Chr7:69278884-69278903 MsG0780039806.01.T01:intron 30.0%
AAGGTAGACAAAAACTGATT+TGG + Chr7:69278523-69278542 None:intergenic 30.0%
AATGGGTATTCATACATAGA+AGG - Chr7:69279342-69279361 MsG0780039806.01.T01:intron 30.0%
AATTCTATAAGGAAGTTGTG+AGG - Chr7:69279779-69279798 MsG0780039806.01.T01:intron 30.0%
AGATTTAGTGTGTAGTGAAA+AGG + Chr7:69278568-69278587 None:intergenic 30.0%
AGTAATCTGAGAAGAAAAGT+AGG + Chr7:69278365-69278384 None:intergenic 30.0%
AGTAGCTATATCAAAAGAGA+GGG + Chr7:69279270-69279289 None:intergenic 30.0%
AGTGATTTCCAAACTTTCAA+AGG - Chr7:69277893-69277912 MsG0780039806.01.T01:intron 30.0%
ATATTCAAGGTTTCCATGAA+AGG + Chr7:69279711-69279730 None:intergenic 30.0%
ATGGGTATTCATACATAGAA+GGG - Chr7:69279343-69279362 MsG0780039806.01.T01:intron 30.0%
CATATCTTTGTCTATGTGAA+TGG + Chr7:69277057-69277076 None:intergenic 30.0%
CATTCACATAGACAAAGATA+TGG - Chr7:69277055-69277074 MsG0780039806.01.T01:intron 30.0%
CTAAATTGTAAGTGATGTCA+TGG + Chr7:69279892-69279911 None:intergenic 30.0%
CTGGAATGTCTTTGTAAAAA+GGG + Chr7:69276242-69276261 None:intergenic 30.0%
CTGTACAAGACAAATACTTA+AGG - Chr7:69278826-69278845 MsG0780039806.01.T01:intron 30.0%
CTTTGTCATATGTAGATTAC+TGG - Chr7:69276746-69276765 MsG0780039806.01.T01:intron 30.0%
GAAATGAAACCAAATAGTTG+TGG - Chr7:69276996-69277015 MsG0780039806.01.T01:CDS 30.0%
GTGATTGAATTTGAAAGTGA+AGG + Chr7:69276138-69276157 None:intergenic 30.0%
TAAAGAATATAACGGCACAA+GGG + Chr7:69277963-69277982 None:intergenic 30.0%
TCAAATTCAATCCATGATGT+TGG + Chr7:69276309-69276328 None:intergenic 30.0%
TCCTTATAGAATTCAGTATC+CGG + Chr7:69279772-69279791 None:intergenic 30.0%
TGAAAGGGATACTTTATCTT+TGG - Chr7:69278063-69278082 MsG0780039806.01.T01:intron 30.0%
TGCCGTACTAAAGAATATAA+CGG + Chr7:69277971-69277990 None:intergenic 30.0%
TGCCGTTATATTCTTTAGTA+CGG - Chr7:69277966-69277985 MsG0780039806.01.T01:intron 30.0%
TGTGATAGACAACACATAAT+GGG + Chr7:69277424-69277443 None:intergenic 30.0%
TGTTTCAATTAATCAAGTGG+TGG + Chr7:69277457-69277476 None:intergenic 30.0%
TTAGATGTGGTTTACTCATA+TGG - Chr7:69276800-69276819 MsG0780039806.01.T01:intron 30.0%
TTCTTTAACACGGTGAAAAA+GGG - Chr7:69280270-69280289 MsG0780039806.01.T01:CDS 30.0%
TTTATTGTGTTTCAGGAAAG+AGG - Chr7:69279743-69279762 MsG0780039806.01.T01:CDS 30.0%
TTTCACCGTGTTAAAGAAAT+TGG + Chr7:69280268-69280287 None:intergenic 30.0%
TTTCTTTAACACGGTGAAAA+AGG - Chr7:69280269-69280288 MsG0780039806.01.T01:CDS 30.0%
! AGGTAGACAAAAACTGATTT+GGG + Chr7:69278522-69278541 None:intergenic 30.0%
! CTTAGAACTTTTGCATTGAA+TGG - Chr7:69276519-69276538 MsG0780039806.01.T01:intron 30.0%
! GCTTAAAGATTTTCATAAGG+AGG + Chr7:69278863-69278882 None:intergenic 30.0%
! GTTAATCCAATACAGGTTTT+GGG - Chr7:69278891-69278910 MsG0780039806.01.T01:intron 30.0%
! TCTGGAATGTCTTTGTAAAA+AGG + Chr7:69276243-69276262 None:intergenic 30.0%
! TGTTAATCCAATACAGGTTT+TGG - Chr7:69278890-69278909 MsG0780039806.01.T01:intron 30.0%
! TTACCAAGAGTGTATATCTT+TGG - Chr7:69277853-69277872 MsG0780039806.01.T01:intron 30.0%
! TTTCACTACCTTTGAAAGTT+TGG + Chr7:69277904-69277923 None:intergenic 30.0%
!! AAGTAATTTGTTGTTGTTGG+TGG + Chr7:69276111-69276130 None:intergenic 30.0%
!! CATTGAATGGATTGATAGTT+TGG - Chr7:69276532-69276551 MsG0780039806.01.T01:intron 30.0%
!! GATTTGTTATTGATCGATCA+AGG + Chr7:69278419-69278438 None:intergenic 30.0%
!! GTTTTCTGTTTGTGTTTTTG+GGG + Chr7:69276176-69276195 None:intergenic 30.0%
!! TGTTCTTCTATTTCTATGAC+AGG - Chr7:69279300-69279319 MsG0780039806.01.T01:intron 30.0%
!! TTTGTGTTCTAAGTGTTTTG+TGG + Chr7:69276086-69276105 None:intergenic 30.0%
!!! AAATTCTGCAGGTTTTAGTT+TGG + Chr7:69277534-69277553 None:intergenic 30.0%
!!! ACTTTTTTAGGAGGATAAGT+GGG + Chr7:69278327-69278346 None:intergenic 30.0%
!!! AGCCATTTTTATTGTGTTTC+AGG - Chr7:69279736-69279755 MsG0780039806.01.T01:CDS 30.0%
!!! ATATATTTTTGGGGAGTGAT+TGG + Chr7:69275882-69275901 None:intergenic 30.0%
!!! CAATGAATCACTTTTTTAGG+AGG + Chr7:69278336-69278355 None:intergenic 30.0%
!!! CTGTTTTATTTTCTTTCAGG+CGG - Chr7:69276590-69276609 MsG0780039806.01.T01:CDS 30.0%
!!! GAAAGTTTTTTAAGGATGGA+AGG - Chr7:69276622-69276641 MsG0780039806.01.T01:intron 30.0%
!!! TCTTTTTTTTCGGTCCAATT+AGG + Chr7:69279650-69279669 None:intergenic 30.0%
!!! TGGCAATGAATCACTTTTTT+AGG + Chr7:69278339-69278358 None:intergenic 30.0%
AAAGACTAGGGTGGAATAAT+AGG + Chr7:69278771-69278790 None:intergenic 35.0%
AAGTAACATATAGCCAGTCA+AGG + Chr7:69279147-69279166 None:intergenic 35.0%
ACCGGATACTGAATTCTATA+AGG - Chr7:69279768-69279787 MsG0780039806.01.T01:intron 35.0%
ACGAAAGGATATCCACAATT+TGG + Chr7:69277624-69277643 None:intergenic 35.0%
ACGCATTTATTCTATTGCTG+AGG + Chr7:69277998-69278017 None:intergenic 35.0%
AGACGGTAAAGAAAAGACTA+GGG + Chr7:69278783-69278802 None:intergenic 35.0%
AGTCCAAATAGGAACAACTA+AGG + Chr7:69275926-69275945 None:intergenic 35.0%
AGTTAGCGAGGAAAGTAAAT+TGG + Chr7:69278601-69278620 None:intergenic 35.0%
ATACAAAATCAGCAAGGGTA+AGG + Chr7:69278253-69278272 None:intergenic 35.0%
ATCTTTGTCTATGTGAATGG+TGG + Chr7:69277054-69277073 None:intergenic 35.0%
ATGAGGGAGAGATTTACATT+GGG + Chr7:69279972-69279991 None:intergenic 35.0%
ATGCTTATGTACTAGCATCT+TGG - Chr7:69279944-69279963 MsG0780039806.01.T01:intron 35.0%
ATTGCAAACATCCAACATCA+TGG - Chr7:69276295-69276314 MsG0780039806.01.T01:intron 35.0%
CAAATAGGAACAACTAAGGT+AGG + Chr7:69275922-69275941 None:intergenic 35.0%
CAACCAAAGATATACACTCT+TGG + Chr7:69277859-69277878 None:intergenic 35.0%
CAACTAAATCTCTCCTTAAG+AGG - Chr7:69278290-69278309 MsG0780039806.01.T01:intron 35.0%
CAGTAGCTATATCAAAAGAG+AGG + Chr7:69279271-69279290 None:intergenic 35.0%
CTAAAGAATATAACGGCACA+AGG + Chr7:69277964-69277983 None:intergenic 35.0%
CTACCTTAGTTGTTCCTATT+TGG - Chr7:69275920-69275939 MsG0780039806.01.T01:intron 35.0%
CTGAGAAGAAAAGTAGGAAA+TGG + Chr7:69278359-69278378 None:intergenic 35.0%
GAGAGATTTAGTTGTCGTTA+TGG + Chr7:69278284-69278303 None:intergenic 35.0%
GTACATTATGAATGCTCTCA+TGG + Chr7:69279219-69279238 None:intergenic 35.0%
GTAGCTATATCAAAAGAGAG+GGG + Chr7:69279269-69279288 None:intergenic 35.0%
GTGTGATAGACAACACATAA+TGG + Chr7:69277425-69277444 None:intergenic 35.0%
GTTAGCGAGGAAAGTAAATT+GGG + Chr7:69278600-69278619 None:intergenic 35.0%
TAGCTATATCAAAAGAGAGG+GGG + Chr7:69279268-69279287 None:intergenic 35.0%
TATAGCTGCAAACCAAATTG+TGG - Chr7:69277609-69277628 MsG0780039806.01.T01:intron 35.0%
TGGATTGAGAATGAAGAGAA+TGG + Chr7:69276066-69276085 None:intergenic 35.0%
TGGGTATTCATACATAGAAG+GGG - Chr7:69279344-69279363 MsG0780039806.01.T01:intron 35.0%
TGGTGATTGAGAATTTGAGA+CGG + Chr7:69278800-69278819 None:intergenic 35.0%
TTATCTTTGGCCATTGATGA+TGG - Chr7:69278076-69278095 MsG0780039806.01.T01:intron 35.0%
TTATTGATCGATCAAGGAAG+TGG + Chr7:69278413-69278432 None:intergenic 35.0%
TTTGTCTTGTACAGCTTAAC+TGG + Chr7:69278820-69278839 None:intergenic 35.0%
! AGCAAAGTTATTGAGAGTAC+TGG + Chr7:69278965-69278984 None:intergenic 35.0%
! CAAGAGTGTATATCTTTGGT+TGG - Chr7:69277857-69277876 MsG0780039806.01.T01:intron 35.0%
! TATGTCTGCTGCTTAATTAG+AGG + Chr7:69280004-69280023 None:intergenic 35.0%
! TTGGAGGTACAAATTAGATG+TGG - Chr7:69276787-69276806 MsG0780039806.01.T01:intron 35.0%
!! AATCAAGTGGTGGAGAATTT+TGG + Chr7:69277447-69277466 None:intergenic 35.0%
!! CAATTTGGTTTGCAGCTATA+TGG + Chr7:69277609-69277628 None:intergenic 35.0%
!! GAGAATGGTGTTGTAACATT+TGG + Chr7:69276051-69276070 None:intergenic 35.0%
!! TGAAAAGGGTCTTATTGATG+AGG - Chr7:69276326-69276345 MsG0780039806.01.T01:intron 35.0%
!!! AATATCTGGTTTGCTTTTCG+TGG - Chr7:69279461-69279480 MsG0780039806.01.T01:intron 35.0%
!!! CACTTTTTTAGGAGGATAAG+TGG + Chr7:69278328-69278347 None:intergenic 35.0%
!!! GGAAGGGATTTTGATTTACA+AGG - Chr7:69276639-69276658 MsG0780039806.01.T01:intron 35.0%
!!! TTTGAGTGTGCTTGTTTTGA+TGG - Chr7:69276467-69276486 MsG0780039806.01.T01:intron 35.0%
AAATTGCTAGAGGGAAGCTT+GGG + Chr7:69278463-69278482 None:intergenic 40.0%
AACATATAGCCAGTCAAGGT+AGG + Chr7:69279143-69279162 None:intergenic 40.0%
AAGAGAGGAAGTAAGTAGAC+TGG - Chr7:69278693-69278712 MsG0780039806.01.T01:intron 40.0%
AAGCTGTACTGTTACTGAAG+CGG + Chr7:69277557-69277576 None:intergenic 40.0%
ACACTCAGACTATCCTTTCA+TGG - Chr7:69279695-69279714 MsG0780039806.01.T01:intron 40.0%
ACAGGATCTTGAAGAAAGAG+AGG - Chr7:69278678-69278697 MsG0780039806.01.T01:intron 40.0%
AGAAATTTGTACTCGGGTGA+TGG + Chr7:69278127-69278146 None:intergenic 40.0%
AGCTTGGGAAATGTTCAGTA+TGG + Chr7:69278448-69278467 None:intergenic 40.0%
AGGAAGTAAGTAGACTGGAA+AGG - Chr7:69278698-69278717 MsG0780039806.01.T01:intron 40.0%
AGGGAAATGGGAAGAAGTAA+AGG + Chr7:69278022-69278041 None:intergenic 40.0%
ATCTCAAATATGGGTCGTGT+GGG + Chr7:69278487-69278506 None:intergenic 40.0%
CAAATGATCCCCTTTCTCAT+CGG - Chr7:69277684-69277703 MsG0780039806.01.T01:intron 40.0%
CAGATAAGTCAGAGTTGAGA+AGG - Chr7:69278721-69278740 MsG0780039806.01.T01:intron 40.0%
CCAAATAGTTGTGGAAGTTG+TGG - Chr7:69277005-69277024 MsG0780039806.01.T01:CDS 40.0%
CCACAACTTCCACAACTATT+TGG + Chr7:69277008-69277027 None:intergenic 40.0%
CCCACACATTATGTTAGAGT+GGG - Chr7:69277814-69277833 MsG0780039806.01.T01:intron 40.0%
CCCACTCTAACATAATGTGT+GGG + Chr7:69277817-69277836 None:intergenic 40.0%
CTCATTTATTGCTCGCTTGT+CGG - Chr7:69278145-69278164 MsG0780039806.01.T01:intron 40.0%
CTGATGCACGACATTGTAAA+TGG - Chr7:69279021-69279040 MsG0780039806.01.T01:intron 40.0%
GAACAGATGATGAGGGAAAT+GGG + Chr7:69278034-69278053 None:intergenic 40.0%
GAGACGGTAAAGAAAAGACT+AGG + Chr7:69278784-69278803 None:intergenic 40.0%
GATGAGGGAGAGATTTACAT+TGG + Chr7:69279973-69279992 None:intergenic 40.0%
GCTGAAAAAAACTGGTAGAC+AGG + Chr7:69278172-69278191 None:intergenic 40.0%
GGGAAATGGGAAGAAGTAAA+GGG + Chr7:69278021-69278040 None:intergenic 40.0%
GTGGCATTGTGAACAAGAAT+TGG + Chr7:69278202-69278221 None:intergenic 40.0%
TCCCACACATTATGTTAGAG+TGG - Chr7:69277813-69277832 MsG0780039806.01.T01:intron 40.0%
TCCCACTCTAACATAATGTG+TGG + Chr7:69277818-69277837 None:intergenic 40.0%
TGAGTAGGAACAGATGATGA+GGG + Chr7:69278041-69278060 None:intergenic 40.0%
TGTCTTTATCCTACCTTGAC+TGG - Chr7:69279131-69279150 MsG0780039806.01.T01:intron 40.0%
TGTGGTTTACTCATATGGTC+TGG - Chr7:69276805-69276824 MsG0780039806.01.T01:CDS 40.0%
TGTTTCAGGAAAGAGGAAAC+CGG - Chr7:69279750-69279769 MsG0780039806.01.T01:CDS 40.0%
TTGGGAAATGTTCAGTATGG+TGG + Chr7:69278445-69278464 None:intergenic 40.0%
TTGTGGGGTGAATTATTCAG+TGG + Chr7:69277732-69277751 None:intergenic 40.0%
TTTGTTCGTGTACACTTGGT+AGG - Chr7:69279564-69279583 MsG0780039806.01.T01:intron 40.0%
! AGATATGGGCCTGTTTGTTT+TGG - Chr7:69277070-69277089 MsG0780039806.01.T01:intron 40.0%
! CAATCTTCTCAAGTGTTGTG+GGG + Chr7:69277747-69277766 None:intergenic 40.0%
! CCAATCTTCTCAAGTGTTGT+GGG + Chr7:69277748-69277767 None:intergenic 40.0%
! GTGAACAAGAATTGGTTCAG+CGG + Chr7:69278194-69278213 None:intergenic 40.0%
! GTGGCAGAATTTTACACGAA+AGG + Chr7:69277639-69277658 None:intergenic 40.0%
! GTTTGTGGAAATTTTGCAGC+TGG + Chr7:69277483-69277502 None:intergenic 40.0%
! TCCAATCTTCTCAAGTGTTG+TGG + Chr7:69277749-69277768 None:intergenic 40.0%
!! ACGTTTTGTTCGTGTACACT+TGG - Chr7:69279560-69279579 MsG0780039806.01.T01:intron 40.0%
!! GTGGTTGACAGTTTTAGTCT+TGG + Chr7:69278394-69278413 None:intergenic 40.0%
AGCTCCTGTTCCATCATCAA+TGG + Chr7:69278089-69278108 None:intergenic 45.0%
AGTATCCCTTTCACGTGAGT+AGG + Chr7:69278056-69278075 None:intergenic 45.0%
AGTGTGTAGTGAAAAGGCTG+AGG + Chr7:69278562-69278581 None:intergenic 45.0%
AGTTACGTCCGATGAGAAAG+GGG + Chr7:69277695-69277714 None:intergenic 45.0%
ATATCAAAAGAGAGGGGGCT+TGG + Chr7:69279263-69279282 None:intergenic 45.0%
CAGTTACGTCCGATGAGAAA+GGG + Chr7:69277696-69277715 None:intergenic 45.0%
CCCACAACACTTGAGAAGAT+TGG - Chr7:69277745-69277764 MsG0780039806.01.T01:intron 45.0%
CGATGAGAAAGGGGATCATT+TGG + Chr7:69277686-69277705 None:intergenic 45.0%
CGGTAAAGAAAAGACTAGGG+TGG + Chr7:69278780-69278799 None:intergenic 45.0%
CGTGAAGAACTGTCATCGAT+GGG - Chr7:69280186-69280205 MsG0780039806.01.T01:CDS 45.0%
CTGTTCCTACTCACGTGAAA+GGG - Chr7:69278048-69278067 MsG0780039806.01.T01:intron 45.0%
GAAATTGCTAGAGGGAAGCT+TGG + Chr7:69278464-69278483 None:intergenic 45.0%
GATCTCAAATATGGGTCGTG+TGG + Chr7:69278488-69278507 None:intergenic 45.0%
GATGGAACAGGAGCTGTATT+AGG - Chr7:69278094-69278113 MsG0780039806.01.T01:intron 45.0%
GGAACAGATGATGAGGGAAA+TGG + Chr7:69278035-69278054 None:intergenic 45.0%
GGCAAGAGAGATACCTCTTA+AGG + Chr7:69278306-69278325 None:intergenic 45.0%
GGGAAGAGCAAATACTTGAC+AGG - Chr7:69278660-69278679 MsG0780039806.01.T01:intron 45.0%
GGGTGAATTATTCAGTGGCT+AGG + Chr7:69277727-69277746 None:intergenic 45.0%
GTGAAGAACTGTCATCGATG+GGG - Chr7:69280187-69280206 MsG0780039806.01.T01:CDS 45.0%
GTGAGTAGGAACAGATGATG+AGG + Chr7:69278042-69278061 None:intergenic 45.0%
GTGTGTAGTGAAAAGGCTGA+GGG + Chr7:69278561-69278580 None:intergenic 45.0%
GTTCAGCGGCTGAAAAAAAC+TGG + Chr7:69278180-69278199 None:intergenic 45.0%
TACTGAAGCGGAAATTCTGC+AGG + Chr7:69277545-69277564 None:intergenic 45.0%
TCACTTCTACCTTCCACAAC+CGG - Chr7:69278222-69278241 MsG0780039806.01.T01:intron 45.0%
TCAGTTACGTCCGATGAGAA+AGG + Chr7:69277697-69277716 None:intergenic 45.0%
TCTCAAATATGGGTCGTGTG+GGG + Chr7:69278486-69278505 None:intergenic 45.0%
TCTGTTCCTACTCACGTGAA+AGG - Chr7:69278047-69278066 MsG0780039806.01.T01:intron 45.0%
TGAAGAACTGTCATCGATGG+GGG - Chr7:69280188-69280207 MsG0780039806.01.T01:CDS 45.0%
TGCAAGCCCAAAACCTGTAT+TGG + Chr7:69278900-69278919 None:intergenic 45.0%
TGCTTAATTAGAGGTGAGGC+AGG + Chr7:69279995-69280014 None:intergenic 45.0%
TTGTGGAAGGTAGAAGTGAG+TGG + Chr7:69278221-69278240 None:intergenic 45.0%
! CTGCTGCTTAATTAGAGGTG+AGG + Chr7:69279999-69280018 None:intergenic 45.0%
!! TTGGCCATTGATGATGGAAC+AGG - Chr7:69278082-69278101 MsG0780039806.01.T01:intron 45.0%
!!! GCTGCTGCTTGCACATTTTT+TGG + Chr7:69280120-69280139 None:intergenic 45.0%
!!! AATTTAATTATATATTTTTG+GGG + Chr7:69275891-69275910 None:intergenic 5.0%
!!! CAATTTAATTATATATTTTT+GGG + Chr7:69275892-69275911 None:intergenic 5.0%
AACAGGAGCTGTATTAGGCG+TGG - Chr7:69278099-69278118 MsG0780039806.01.T01:intron 50.0%
AAGGTATGTCCGGTTGTGGA+AGG + Chr7:69278234-69278253 None:intergenic 50.0%
AGCAGCTGAAGTTGGGATCA+AGG - Chr7:69280134-69280153 MsG0780039806.01.T01:CDS 50.0%
ATTAGAGGTGAGGCAGGATG+AGG + Chr7:69279989-69280008 None:intergenic 50.0%
CAGCAAGGGTAAGGTATGTC+CGG + Chr7:69278244-69278263 None:intergenic 50.0%
CGTGTGGGGAAATTGCTAGA+GGG + Chr7:69278472-69278491 None:intergenic 50.0%
GAAGGACATTCGACTGCCTA+TGG - Chr7:69278739-69278758 MsG0780039806.01.T01:intron 50.0%
GCAGCTGAAGTTGGGATCAA+GGG - Chr7:69280135-69280154 MsG0780039806.01.T01:CDS 50.0%
GCGTGAAGAACTGTCATCGA+TGG - Chr7:69280185-69280204 MsG0780039806.01.T01:CDS 50.0%
TCGTGTGGGGAAATTGCTAG+AGG + Chr7:69278473-69278492 None:intergenic 50.0%
TGCAAGCAGCAGCTGAAGTT+GGG - Chr7:69280127-69280146 MsG0780039806.01.T01:CDS 50.0%
TTAGAGGTGAGGCAGGATGA+GGG + Chr7:69279988-69280007 None:intergenic 50.0%
GGGGTAAGAGTGAGTTAGCG+AGG + Chr7:69278613-69278632 None:intergenic 55.0%
GGGTAAGGTATGTCCGGTTG+TGG + Chr7:69278238-69278257 None:intergenic 55.0%
GTGCAAGCAGCAGCTGAAGT+TGG - Chr7:69280126-69280145 MsG0780039806.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
Chr7 gene 69275874 69280510 69275874 ID=MsG0780039806.01;Name=MsG0780039806.01
Chr7 mRNA 69275874 69280510 69275874 ID=MsG0780039806.01.T01;Parent=MsG0780039806.01;Name=MsG0780039806.01.T01;_AED=0.43;_eAED=0.43;_QI=147|1|1|1|0.83|0.71|7|189|258
Chr7 exon 69275874 69275921 69275874 ID=MsG0780039806.01.T01:exon:12446;Parent=MsG0780039806.01.T01
Chr7 exon 69276004 69276268 69276004 ID=MsG0780039806.01.T01:exon:12445;Parent=MsG0780039806.01.T01
Chr7 five_prime_UTR 69280364 69280510 69280364 ID=MsG0780039806.01.T01:five_prime_utr;Parent=MsG0780039806.01.T01
Chr7 CDS 69280037 69280363 69280037 ID=MsG0780039806.01.T01:cds;Parent=MsG0780039806.01.T01
Chr7 CDS 69279724 69279775 69279724 ID=MsG0780039806.01.T01:cds;Parent=MsG0780039806.01.T01
Chr7 CDS 69276948 69277062 69276948 ID=MsG0780039806.01.T01:cds;Parent=MsG0780039806.01.T01
Chr7 CDS 69276803 69276873 69276803 ID=MsG0780039806.01.T01:cds;Parent=MsG0780039806.01.T01
Chr7 CDS 69276539 69276626 69276539 ID=MsG0780039806.01.T01:cds;Parent=MsG0780039806.01.T01
Chr7 CDS 69276145 69276268 69276145 ID=MsG0780039806.01.T01:cds;Parent=MsG0780039806.01.T01
Chr7 three_prime_UTR 69276004 69276144 69276004 ID=MsG0780039806.01.T01:three_prime_utr;Parent=MsG0780039806.01.T01
Chr7 three_prime_UTR 69275874 69275921 69275874 ID=MsG0780039806.01.T01:three_prime_utr;Parent=MsG0780039806.01.T01
Chr7 mRNA 69275955 69280510 69275955 ID=MsG0780039806.01.T02;Parent=MsG0780039806.01;Name=MsG0780039806.01.T02;_AED=0.43;_eAED=0.43;_QI=147|1|1|1|1|1|6|190|258
Chr7 exon 69275955 69276268 69275955 ID=MsG0780039806.01.T02:exon:12447;Parent=MsG0780039806.01.T02
Chr7 five_prime_UTR 69280364 69280510 69280364 ID=MsG0780039806.01.T02:five_prime_utr;Parent=MsG0780039806.01.T02
Chr7 CDS 69280037 69280363 69280037 ID=MsG0780039806.01.T02:cds;Parent=MsG0780039806.01.T02
Chr7 CDS 69279724 69279775 69279724 ID=MsG0780039806.01.T02:cds;Parent=MsG0780039806.01.T02
Chr7 CDS 69276948 69277062 69276948 ID=MsG0780039806.01.T02:cds;Parent=MsG0780039806.01.T02
Chr7 CDS 69276803 69276873 69276803 ID=MsG0780039806.01.T02:cds;Parent=MsG0780039806.01.T02
Chr7 CDS 69276539 69276626 69276539 ID=MsG0780039806.01.T02:cds;Parent=MsG0780039806.01.T02
Chr7 CDS 69276145 69276268 69276145 ID=MsG0780039806.01.T02:cds;Parent=MsG0780039806.01.T02
Chr7 three_prime_UTR 69275955 69276144 69275955 ID=MsG0780039806.01.T02:three_prime_utr;Parent=MsG0780039806.01.T02
Gene Sequence

>MsG0780039806.01.T01

ATGAAAACAATTGCAAAAATGGTGTTACCAAATGTTACAACACCATTCTCTTCATTCTCAATCCACAAAACACTTAGAACACAAACACCACCAACAACAACAAATTACTTAAAACCTTCACTTTCAAATTCAATCACAAACATGTCATCATTCCCCAAAAACACAAACAGAAAACTTCCAATTCTGTTATTTGACATCATGGACACAATTGTTCGTGACCCTTTTTACAAAGACATTCCAGAATTCTTTGGAATGTCTTTCAATGAACTCATAGATTGCAAACATCCAACATCATGGATTGAATTTGAAAAGGGTCTTATTGATGAGGCGGAGCTAGAAAGAAAGTTTTTTAAGGATGGAAGGGATTTTGATTTACAAGGCCTTAAAACTTGTATGAGAAATGGGTATTCATACATAGAAGGGGTTGAACAATTGCTTCTTGCCTTAAAGAAAAATAACTTTGAGATGCATGCTTTTACTAATTATCCTATATGGTATCAGTTGATCGAAGACAAGTTAAAGCTATCAAAATATTTATCTTGGACGTTTTGTTCGTGTACACTTGGAAAGAGGAAACCGGATACTGAATTCTATAAGGAAGTTGTGAGGCATCTTGAAGTTGATCCAGAATATTGTATTTTCATAGATGACAGGCCAAAAAATGTGCAAGCAGCAGCTGAAGTTGGGATCAAGGGTGTACATTTCAAGAATGTCAATTTACTGCGTGAAGAACTGTCATCGATGGGGGTTGACATTTCAACTGACGAAGATCAATAG

>MsG0780039806.01.T02

ATGAAAACAATTGCAAAAATGGTGTTACCAAATGTTACAACACCATTCTCTTCATTCTCAATCCACAAAACACTTAGAACACAAACACCACCAACAACAACAAATTACTTAAAACCTTCACTTTCAAATTCAATCACAAACATGTCATCATTCCCCAAAAACACAAACAGAAAACTTCCAATTCTGTTATTTGACATCATGGACACAATTGTTCGTGACCCTTTTTACAAAGACATTCCAGAATTCTTTGGAATGTCTTTCAATGAACTCATAGATTGCAAACATCCAACATCATGGATTGAATTTGAAAAGGGTCTTATTGATGAGGCGGAGCTAGAAAGAAAGTTTTTTAAGGATGGAAGGGATTTTGATTTACAAGGCCTTAAAACTTGTATGAGAAATGGGTATTCATACATAGAAGGGGTTGAACAATTGCTTCTTGCCTTAAAGAAAAATAACTTTGAGATGCATGCTTTTACTAATTATCCTATATGGTATCAGTTGATCGAAGACAAGTTAAAGCTATCAAAATATTTATCTTGGACGTTTTGTTCGTGTACACTTGGAAAGAGGAAACCGGATACTGAATTCTATAAGGAAGTTGTGAGGCATCTTGAAGTTGATCCAGAATATTGTATTTTCATAGATGACAGGCCAAAAAATGTGCAAGCAGCAGCTGAAGTTGGGATCAAGGGTGTACATTTCAAGAATGTCAATTTACTGCGTGAAGAACTGTCATCGATGGGGGTTGACATTTCAACTGACGAAGATCAATAG

Protein sequence

>MsG0780039806.01.T01

MKTIAKMVLPNVTTPFSSFSIHKTLRTQTPPTTTNYLKPSLSNSITNMSSFPKNTNRKLPILLFDIMDTIVRDPFYKDIPEFFGMSFNELIDCKHPTSWIEFEKGLIDEAELERKFFKDGRDFDLQGLKTCMRNGYSYIEGVEQLLLALKKNNFEMHAFTNYPIWYQLIEDKLKLSKYLSWTFCSCTLGKRKPDTEFYKEVVRHLEVDPEYCIFIDDRPKNVQAAAEVGIKGVHFKNVNLLREELSSMGVDISTDEDQ*

>MsG0780039806.01.T02

MKTIAKMVLPNVTTPFSSFSIHKTLRTQTPPTTTNYLKPSLSNSITNMSSFPKNTNRKLPILLFDIMDTIVRDPFYKDIPEFFGMSFNELIDCKHPTSWIEFEKGLIDEAELERKFFKDGRDFDLQGLKTCMRNGYSYIEGVEQLLLALKKNNFEMHAFTNYPIWYQLIEDKLKLSKYLSWTFCSCTLGKRKPDTEFYKEVVRHLEVDPEYCIFIDDRPKNVQAAAEVGIKGVHFKNVNLLREELSSMGVDISTDEDQ*