AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0698110

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0698110 MtrunA17_Chr4g0051181 94.130 494 20 5 1 492 1 487 0.0 873
Msa0698110 MtrunA17_Chr7g0216891 36.307 482 219 18 65 484 33 488 5.99e-54 191
Msa0698110 MtrunA17_Chr4g0060271 39.869 306 161 8 21 309 17 316 1.07e-51 185
Msa0698110 MtrunA17_Chr7g0270831 41.107 253 102 6 230 481 198 404 6.73e-49 174
Msa0698110 MtrunA17_Chr3g0099641 42.742 248 103 8 232 478 235 444 1.51e-48 173
Msa0698110 MtrunA17_Chr2g0322391 33.700 454 225 15 55 478 148 555 3.13e-48 175
Msa0698110 MtrunA17_Chr2g0288871 40.408 245 122 5 69 308 140 365 3.41e-48 174
Msa0698110 MtrunA17_Chr4g0075201 32.458 419 223 13 55 468 103 466 2.12e-42 157
Msa0698110 MtrunA17_Chr2g0302391 51.974 152 62 3 232 380 195 338 9.00e-41 151
Msa0698110 MtrunA17_Chr4g0025051 62.376 101 38 0 233 333 320 420 1.78e-39 150
Msa0698110 MtrunA17_Chr4g0025061 60.396 101 40 0 233 333 345 445 2.47e-37 145
Msa0698110 MtrunA17_Chr4g0024391 44.366 142 70 3 197 333 177 314 1.34e-32 130
Msa0698110 MtrunA17_Chr4g0001361 54.762 84 31 2 231 308 140 222 3.95e-26 108
Msa0698110 MtrunA17_Chr3g0136961 45.045 111 51 2 205 305 85 195 1.53e-25 106
Msa0698110 MtrunA17_Chr1g0150271 36.496 137 84 2 174 308 26 161 7.42e-25 103
Msa0698110 MtrunA17_Chr1g0150281 43.810 105 59 0 228 332 120 224 1.52e-24 103
Msa0698110 MtrunA17_Chr5g0445311 50.526 95 46 1 230 324 346 439 2.11e-24 106
Msa0698110 MtrunA17_Chr5g0445311 52.459 61 27 2 248 308 200 258 3.99e-12 68.6
Msa0698110 MtrunA17_Chr2g0333851 53.086 81 33 2 233 308 149 229 2.15e-23 100
Msa0698110 MtrunA17_Chr3g0106491 53.846 78 35 1 232 309 349 425 3.07e-23 102
Msa0698110 MtrunA17_Chr3g0106491 53.226 62 27 2 248 309 198 257 9.57e-15 76.6
Msa0698110 MtrunA17_Chr4g0004911 51.899 79 37 1 232 310 320 397 3.45e-23 102
Msa0698110 MtrunA17_Chr4g0004911 44.872 78 40 2 231 308 169 243 6.27e-15 77.0
Msa0698110 MtrunA17_Chr7g0218081 44.444 117 58 3 229 339 387 502 5.68e-23 102
Msa0698110 MtrunA17_Chr7g0218081 51.724 58 26 2 248 305 228 283 3.27e-11 65.5
Msa0698110 MtrunA17_Chr3g0101131 55.000 80 35 1 230 309 397 475 8.10e-23 102
Msa0698110 MtrunA17_Chr3g0101131 33.333 147 90 4 248 393 243 382 4.07e-12 68.6
Msa0698110 MtrunA17_Chr3g0079691 50.000 90 44 1 232 321 479 567 1.22e-22 101
Msa0698110 MtrunA17_Chr3g0079691 51.667 60 27 2 249 308 281 338 2.63e-12 69.3
Msa0698110 MtrunA17_Chr7g0243891 53.165 79 36 1 232 310 358 435 1.41e-22 100
Msa0698110 MtrunA17_Chr7g0243891 37.398 123 71 4 187 308 157 274 2.78e-14 75.1
Msa0698110 MtrunA17_Chr5g0432161 53.846 78 35 1 232 309 405 481 1.47e-22 100
Msa0698110 MtrunA17_Chr5g0432161 54.098 61 26 2 248 308 244 302 3.63e-14 75.1
Msa0698110 MtrunA17_Chr5g0419241 82.979 47 8 0 232 278 61 107 2.09e-22 92.0
Msa0698110 MtrunA17_Chr5g0447701 50.000 86 42 1 233 318 237 321 3.17e-22 98.6
Msa0698110 MtrunA17_Chr5g0418191 45.192 104 52 2 220 323 296 394 5.72e-22 98.2
Msa0698110 MtrunA17_Chr5g0418191 39.623 106 51 4 214 308 106 209 7.54e-14 73.6
Msa0698110 MtrunA17_Chr7g0270191 44.944 89 48 1 232 320 129 216 1.71e-21 94.7
Msa0698110 MtrunA17_Chr2g0294231 46.237 93 49 1 232 324 187 278 1.96e-21 95.9
Msa0698110 MtrunA17_Chr4g0042831 48.276 87 44 1 233 319 263 348 3.88e-21 95.1
Msa0698110 MtrunA17_Chr7g0249301 50.633 79 38 1 232 310 276 353 4.03e-21 95.1
Msa0698110 MtrunA17_Chr7g0249301 49.206 63 30 2 246 308 60 120 9.07e-11 63.5
Msa0698110 MtrunA17_Chr7g0249311 50.633 79 38 1 232 310 376 453 4.41e-21 96.7
Msa0698110 MtrunA17_Chr1g0150801 51.351 74 35 1 233 306 87 159 5.52e-21 89.7
Msa0698110 MtrunA17_Chr4g0074001 51.250 80 38 1 230 309 341 419 7.67e-21 95.5
Msa0698110 MtrunA17_Chr7g0263531 50.649 77 37 1 236 312 349 424 1.99e-20 93.6
Msa0698110 MtrunA17_Chr7g0263531 46.250 80 37 3 249 328 190 263 2.90e-13 71.6
Msa0698110 MtrunA17_Chr7g0270051 54.054 74 31 1 248 321 53 123 2.60e-20 90.5
Msa0698110 MtrunA17_Chr4g0053281 38.095 126 49 2 205 330 242 338 2.91e-20 92.0
Msa0698110 MtrunA17_Chr4g0051881 40.385 104 57 2 235 338 165 263 5.21e-20 91.3
Msa0698110 MtrunA17_Chr1g0194481 50.649 77 37 1 232 308 142 217 9.53e-20 90.1
Msa0698110 MtrunA17_Chr7g0224801 50.704 71 34 1 237 307 82 151 1.00e-19 86.7
Msa0698110 MtrunA17_Chr8g0383251 41.237 97 50 2 235 331 95 184 6.76e-19 84.3
Msa0698110 MtrunA17_Chr5g0401821 61.818 55 21 0 253 307 204 258 1.02e-18 86.3
Msa0698110 MtrunA17_Chr8g0379461 56.923 65 28 0 248 312 76 140 1.16e-18 85.5
Msa0698110 MtrunA17_Chr4g0068541 48.718 78 39 1 232 309 192 268 1.46e-18 87.8
Msa0698110 MtrunA17_Chr1g0184691 57.895 57 24 0 249 305 294 350 2.29e-18 86.7
Msa0698110 MtrunA17_Chr1g0188941 46.154 78 41 1 231 308 34 110 2.36e-18 80.9
Msa0698110 MtrunA17_Chr5g0443131 49.333 75 37 1 235 309 144 217 4.00e-18 85.1
Msa0698110 MtrunA17_Chr2g0319961 49.367 79 40 0 239 317 71 149 4.22e-18 84.3
Msa0698110 MtrunA17_Chr1g0147881 39.796 98 40 1 208 305 241 319 8.26e-18 84.7
Msa0698110 MtrunA17_Chr8g0348311 40.625 96 54 1 225 317 129 224 1.20e-17 84.3
Msa0698110 MtrunA17_Chr2g0293481 48.000 75 39 0 249 323 268 342 1.93e-17 84.7
Msa0698110 MtrunA17_Chr8g0386241 44.000 75 41 1 233 307 88 161 3.49e-17 79.7
Msa0698110 MtrunA17_Chr5g0418781 44.086 93 50 2 232 323 108 199 5.64e-17 81.3
Msa0698110 MtrunA17_Chr3g0129321 45.455 77 41 1 235 311 105 180 1.55e-16 78.2
Msa0698110 MtrunA17_Chr8g0335811 47.297 74 38 1 232 305 138 210 1.56e-16 79.0
Msa0698110 MtrunA17_Chr7g0228941 54.386 57 26 0 249 305 53 109 2.94e-16 75.1
Msa0698110 MtrunA17_Chr4g0071521 46.154 78 33 1 248 325 245 313 3.83e-16 79.3
Msa0698110 MtrunA17_Chr7g0248721 51.389 72 33 2 235 306 128 197 4.22e-16 77.4
Msa0698110 MtrunA17_Chr2g0284321 52.459 61 29 0 248 308 35 95 4.55e-16 77.4
Msa0698110 MtrunA17_Chr7g0248691 50.769 65 32 0 253 317 159 223 5.25e-16 79.0
Msa0698110 MtrunA17_Chr2g0289181 38.000 100 48 2 249 334 15 114 8.65e-16 76.6
Msa0698110 MtrunA17_Chr8g0387501 43.836 73 41 0 245 317 126 198 8.89e-16 77.4
Msa0698110 MtrunA17_Chr3g0129361 44.595 74 40 1 232 305 128 200 1.37e-15 75.9
Msa0698110 MtrunA17_Chr3g0139021 48.000 75 35 1 235 305 297 371 1.84e-15 78.2
Msa0698110 MtrunA17_Chr5g0432071 36.458 96 59 2 248 343 104 197 1.02e-14 73.2
Msa0698110 MtrunA17_Chr7g0238921 47.222 72 36 2 235 305 110 180 1.42e-14 74.7
Msa0698110 MtrunA17_Chr8g0383351 51.667 60 28 1 246 305 158 216 2.33e-14 72.8
Msa0698110 MtrunA17_Chr1g0202461 47.761 67 35 0 249 315 262 328 1.23e-13 72.4
Msa0698110 MtrunA17_Chr6g0485431 46.250 80 41 2 231 309 137 215 1.82e-13 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0698110 AT1G68150.1 46.457 381 141 13 10 374 27 360 2.24e-85 268
Msa0698110 AT5G15130.1 41.946 298 136 8 52 322 14 301 9.47e-55 192
Msa0698110 AT5G15130.2 43.866 269 115 7 80 322 1 259 4.12e-53 187
Msa0698110 AT4G04450.2 45.736 258 113 5 225 478 175 409 2.87e-52 183
Msa0698110 AT4G04450.1 45.736 258 113 5 225 478 269 503 1.50e-51 183
Msa0698110 AT1G62300.1 32.485 511 257 16 13 479 73 539 3.80e-48 174
Msa0698110 AT1G18860.1 41.379 290 124 6 232 478 223 509 8.37e-47 170
Msa0698110 AT4G01720.1 46.559 247 107 5 230 475 221 443 6.54e-45 164
Msa0698110 AT4G22070.4 35.238 315 171 6 19 308 51 357 4.92e-43 160
Msa0698110 AT4G22070.3 35.238 315 171 6 19 308 51 357 4.92e-43 160
Msa0698110 AT4G22070.2 35.238 315 171 6 19 308 51 357 4.92e-43 160
Msa0698110 AT4G22070.1 35.238 315 171 6 19 308 51 357 4.92e-43 160
Msa0698110 AT1G69810.1 34.559 272 145 8 69 322 22 278 2.33e-36 139
Msa0698110 AT1G69810.2 63.043 92 33 1 232 322 129 220 3.67e-35 134
Msa0698110 AT4G31800.1 50.962 104 45 3 233 331 156 258 7.68e-26 107
Msa0698110 AT4G31800.2 50.962 104 45 3 233 331 91 193 7.96e-26 106
Msa0698110 AT1G80840.1 58.462 65 27 0 244 308 142 206 9.19e-25 104
Msa0698110 AT2G25000.2 61.905 63 24 0 246 308 101 163 2.02e-23 99.0
Msa0698110 AT2G25000.4 61.905 63 24 0 246 308 101 163 2.02e-23 99.0
Msa0698110 AT2G38470.1 41.463 123 71 1 232 354 346 467 3.57e-23 103
Msa0698110 AT2G38470.1 48.101 79 37 4 230 308 168 242 6.28e-14 74.3
Msa0698110 AT2G25000.3 61.905 63 24 0 246 308 123 185 3.96e-23 99.0
Msa0698110 AT2G25000.1 61.905 63 24 0 246 308 144 206 4.16e-23 99.4
Msa0698110 AT5G56270.1 55.128 78 34 1 232 309 471 547 7.20e-23 102
Msa0698110 AT5G56270.1 48.438 64 31 2 245 308 270 331 5.08e-11 65.5
Msa0698110 AT5G49520.1 34.884 172 73 5 232 380 205 360 9.95e-23 100
Msa0698110 AT4G26640.5 53.750 80 36 1 230 309 187 265 1.30e-22 99.8
Msa0698110 AT4G26640.5 45.714 70 36 2 239 308 26 93 1.11e-11 67.0
Msa0698110 AT4G26640.6 53.750 80 36 1 230 309 187 265 1.30e-22 99.8
Msa0698110 AT4G26640.6 45.714 70 36 2 239 308 26 93 1.11e-11 67.0
Msa0698110 AT4G26640.4 53.750 80 36 1 230 309 187 265 1.30e-22 99.8
Msa0698110 AT4G26640.4 45.714 70 36 2 239 308 26 93 1.11e-11 67.0
Msa0698110 AT4G26640.3 53.750 80 36 1 230 309 187 265 1.30e-22 99.8
Msa0698110 AT4G26640.3 45.714 70 36 2 239 308 26 93 1.11e-11 67.0
Msa0698110 AT5G26170.1 54.167 72 32 1 234 305 99 169 1.74e-22 94.7
Msa0698110 AT1G13960.2 48.352 91 42 2 218 308 230 315 2.87e-22 98.6
Msa0698110 AT1G13960.2 54.098 61 26 2 248 308 76 134 8.32e-14 73.2
Msa0698110 AT4G26640.1 53.750 80 36 1 230 309 291 369 3.33e-22 99.8
Msa0698110 AT4G26640.1 45.714 70 36 2 239 308 130 197 1.78e-11 66.6
Msa0698110 AT4G26640.7 53.750 80 36 1 230 309 323 401 3.41e-22 100
Msa0698110 AT4G26640.7 45.714 70 36 2 239 308 162 229 1.72e-11 67.0
Msa0698110 AT1G29860.1 53.247 77 35 1 232 308 120 195 3.52e-22 96.7
Msa0698110 AT2G04880.2 53.247 77 35 1 234 310 269 344 3.55e-22 99.8
Msa0698110 AT2G04880.2 36.000 100 49 3 246 332 109 206 5.58e-13 71.2
Msa0698110 AT1G13960.1 47.917 96 44 3 213 308 379 468 4.42e-22 99.8
Msa0698110 AT1G13960.1 54.098 61 26 2 248 308 229 287 1.00e-13 73.9
Msa0698110 AT4G26640.2 53.750 80 36 1 230 309 363 441 4.55e-22 99.8
Msa0698110 AT4G26640.2 45.714 70 36 2 239 308 202 269 1.95e-11 66.6
Msa0698110 AT2G04880.1 53.247 77 35 1 234 310 293 368 5.74e-22 99.0
Msa0698110 AT2G04880.1 45.588 68 35 2 246 313 109 174 8.19e-13 70.9
Msa0698110 AT5G46350.1 45.536 112 56 3 235 345 170 277 6.92e-22 97.1
Msa0698110 AT3G01080.1 45.833 96 47 2 213 308 275 365 1.69e-21 97.1
Msa0698110 AT4G30935.1 43.810 105 53 2 226 325 309 412 2.08e-21 97.4
Msa0698110 AT3G01080.2 45.833 96 47 2 213 308 313 403 2.10e-21 97.4
Msa0698110 AT4G18170.1 51.282 78 37 1 232 309 156 232 3.85e-21 94.7
Msa0698110 AT2G03340.1 45.745 94 46 2 220 313 391 479 4.40e-21 96.7
Msa0698110 AT2G03340.1 54.098 61 26 2 248 308 250 308 4.50e-14 75.1
Msa0698110 AT5G13080.1 50.685 73 35 1 235 307 54 125 5.25e-21 89.7
Msa0698110 AT5G07100.2 50.649 77 37 1 232 308 125 200 1.82e-20 90.1
Msa0698110 AT5G07100.2 40.860 93 50 2 246 338 22 109 1.54e-13 70.1
Msa0698110 AT5G07100.4 50.649 77 37 1 232 308 125 200 1.82e-20 90.1
Msa0698110 AT5G07100.4 40.860 93 50 2 246 338 22 109 1.54e-13 70.1
Msa0698110 AT5G07100.5 50.649 77 37 1 232 308 125 200 1.82e-20 90.1
Msa0698110 AT5G07100.5 40.860 93 50 2 246 338 22 109 1.54e-13 70.1
Msa0698110 AT5G07100.3 50.649 77 37 1 232 308 125 200 1.82e-20 90.1
Msa0698110 AT5G07100.3 40.860 93 50 2 246 338 22 109 1.54e-13 70.1
Msa0698110 AT5G07100.1 50.649 77 37 1 232 308 218 293 2.97e-20 91.7
Msa0698110 AT5G07100.1 40.860 93 50 2 246 338 115 202 7.27e-13 69.7
Msa0698110 AT3G62340.1 42.105 114 61 2 235 344 105 217 4.59e-20 90.5
Msa0698110 AT2G47260.1 44.898 98 48 3 232 324 158 254 6.47e-20 91.3
Msa0698110 AT1G29280.1 50.704 71 35 0 239 309 65 135 8.47e-20 89.4
Msa0698110 AT3G04670.1 66.038 53 18 0 253 305 267 319 2.29e-19 89.7
Msa0698110 AT5G41570.1 51.389 72 34 1 235 306 85 155 2.35e-19 86.3
Msa0698110 AT4G26440.1 32.984 191 92 7 231 415 355 515 3.39e-19 91.3
Msa0698110 AT4G24240.1 48.315 89 40 2 232 314 259 347 3.53e-19 89.4
Msa0698110 AT2G23320.1 51.899 79 34 1 233 307 221 299 3.73e-19 88.6
Msa0698110 AT5G64810.1 50.704 71 34 1 235 305 97 166 8.43e-19 85.1
Msa0698110 AT1G64000.1 51.389 72 34 1 235 306 101 171 1.14e-18 84.7
Msa0698110 AT2G30590.1 61.404 57 21 1 253 308 318 374 1.26e-18 88.2
Msa0698110 AT4G31550.1 40.594 101 41 1 205 305 222 303 1.55e-18 87.0
Msa0698110 AT5G28650.1 62.264 53 20 0 253 305 267 319 1.73e-18 87.0
Msa0698110 AT2G30250.1 48.718 78 39 1 232 309 312 388 1.93e-18 87.8
Msa0698110 AT2G24570.1 41.584 101 40 1 205 305 219 300 2.07e-18 86.7
Msa0698110 AT4G31550.2 40.816 98 39 1 208 305 224 302 2.23e-18 86.7
Msa0698110 AT1G55600.1 45.455 77 41 1 232 308 291 366 2.42e-18 88.2
Msa0698110 AT2G46130.1 52.778 72 33 1 235 306 17 87 3.02e-18 80.9
Msa0698110 AT1G69310.4 50.000 74 36 1 232 305 131 203 4.36e-18 85.1
Msa0698110 AT1G69310.2 50.000 74 36 1 232 305 131 203 4.36e-18 85.1
Msa0698110 AT1G69310.1 50.000 74 36 1 232 305 131 203 4.36e-18 85.1
Msa0698110 AT3G58710.1 45.652 92 47 1 239 330 62 150 8.11e-18 84.0
Msa0698110 AT3G58710.2 45.161 93 48 1 239 331 61 150 8.37e-18 84.0
Msa0698110 AT3G01970.1 50.000 72 35 1 234 305 51 121 8.46e-18 80.9
Msa0698110 AT2G37260.2 56.923 65 27 1 243 307 262 325 5.65e-17 82.8
Msa0698110 AT2G37260.2 40.566 106 55 4 223 324 56 157 2.36e-14 74.7
Msa0698110 AT2G37260.3 56.923 65 27 1 243 307 264 327 5.76e-17 82.8
Msa0698110 AT2G37260.3 40.566 106 55 4 223 324 58 159 2.23e-14 74.7
Msa0698110 AT1G30650.1 53.968 63 29 0 253 315 222 284 9.56e-17 82.8
Msa0698110 AT2G37260.1 56.923 65 27 1 243 307 344 407 1.19e-16 82.4
Msa0698110 AT2G37260.1 42.857 98 45 4 230 318 143 238 5.38e-14 74.3
Msa0698110 AT2G34830.1 52.239 67 32 0 249 315 216 282 1.20e-16 82.4
Msa0698110 AT2G34830.2 52.239 67 32 0 249 315 225 291 1.45e-16 82.4
Msa0698110 AT4G01250.1 48.571 70 36 0 248 317 128 197 1.66e-16 80.5
Msa0698110 AT2G44745.1 45.946 74 39 1 232 305 129 201 2.02e-16 78.6
Msa0698110 AT4G39410.1 47.297 74 38 1 232 305 207 279 2.67e-16 80.1
Msa0698110 AT5G52830.1 45.783 83 42 1 239 318 153 235 9.21e-16 79.0
Msa0698110 AT2G21900.1 45.455 66 35 1 243 308 104 168 1.58e-15 75.9
Msa0698110 AT4G23550.1 40.860 93 54 1 231 323 124 215 2.72e-15 77.0
Msa0698110 AT4G31800.3 56.897 58 20 2 233 285 156 213 2.42e-14 73.2
Msa0698110 AT5G43290.1 55.172 58 25 1 248 305 114 170 1.20e-13 71.6
Msa0698110 AT5G45050.2 49.206 63 32 0 253 315 1157 1219 2.03e-13 73.6
Msa0698110 AT5G45050.1 47.059 68 36 0 248 315 1180 1247 2.10e-13 73.6
Msa0698110 AT2G46130.2 48.611 72 32 2 235 306 17 83 2.25e-13 66.6
Msa0698110 AT5G45050.4 48.438 64 33 0 253 316 1046 1109 2.49e-13 73.2
Msa0698110 AT1G69310.3 45.946 74 35 2 232 305 131 199 3.46e-13 70.5
Msa0698110 AT5G24110.1 43.836 73 38 2 233 303 99 170 1.39e-11 65.9
Msa0698110 AT5G45260.1 43.590 78 42 1 248 323 1208 1285 3.98e-11 66.2
Msa0698110 AT2G40740.1 46.667 75 35 2 248 317 173 247 8.34e-11 63.5

Find 86 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGAGTTCATTATTATTAT+TGG 0.182204 4_4:-68300523 None:intergenic
AATCCTAATATTTCAGATTA+TGG 0.198452 4_4:+68300375 Msa0698110:CDS
ATTATTAGTGTAAGGATTAA+AGG 0.199622 4_4:-68300415 None:intergenic
ATATTTGAAGATTGGTTTAA+TGG 0.231617 4_4:-68300450 None:intergenic
AGCGGCTTCATTTATGTTAC+TGG 0.242571 4_4:+68300344 Msa0698110:CDS
GAAACCCTAGCCTTTCTATT+AGG 0.250513 4_4:-68299758 None:intergenic
AAACCATAATCTGAAATATT+AGG 0.280244 4_4:-68300378 None:intergenic
ACTTTCCATCTCCATTTCTA+AGG 0.281935 4_4:-68299142 None:intergenic
ATATATACTTGTTTCCTAAC+TGG 0.294382 4_4:-68300007 None:intergenic
AGTATAAGTGAGAGTGATTT+GGG 0.310766 4_4:+68299572 Msa0698110:CDS
GGATGTCAATGGAGAAAATA+TGG 0.317894 4_4:+68299917 Msa0698110:CDS
AGGTTGATCAGTTGAATTAT+TGG 0.319022 4_4:-68300583 None:intergenic
TGCTTCTAATATTTGAAGAT+TGG 0.335707 4_4:-68300458 None:intergenic
TATTTGAAGATTGGTTTAAT+GGG 0.337890 4_4:-68300449 None:intergenic
GTAATATTGTTTGGTGGTAA+TGG 0.353117 4_4:-68299539 None:intergenic
AATTCCTTGGGATGGATCAT+TGG 0.353833 4_4:-68300487 None:intergenic
TGGATATTCATGATAGGGTT+TGG 0.367522 4_4:+68300700 Msa0698110:CDS
ATTCCTTGGGATGGATCATT+GGG 0.374431 4_4:-68300486 None:intergenic
ATCTCATGAAATGATCTTGA+TGG 0.384052 4_4:-68299485 None:intergenic
TAGTATAAGTGAGAGTGATT+TGG 0.391243 4_4:+68299571 Msa0698110:CDS
TTGCATCAGATCCTAAGTTT+AGG 0.396218 4_4:+68300763 Msa0698110:CDS
TGTAAGGATTAAAGGATTGT+TGG 0.404802 4_4:-68300407 None:intergenic
ATCAGTTGAATTATTGGAGC+TGG 0.405735 4_4:-68300577 None:intergenic
TCATCATCAGTAATATTGTT+TGG 0.412086 4_4:-68299548 None:intergenic
TCTGACACGTGTTTATTGTC+TGG 0.415932 4_4:-68299610 None:intergenic
GCCATTGCAGTTGCACCAAC+AGG 0.427583 4_4:-68300306 None:intergenic
ACAGTTAAGTGCCTTAGAAA+TGG 0.427630 4_4:+68299131 Msa0698110:intron
GTAAGGATTAAAGGATTGTT+GGG 0.431662 4_4:-68300406 None:intergenic
TTGCTCCAGGCTGTCCAGTT+AGG 0.435647 4_4:+68299993 Msa0698110:CDS
TGAAAGCTATTATTAGTGTA+AGG 0.448252 4_4:-68300423 None:intergenic
TACCACTGGATATTCATGAT+AGG 0.448415 4_4:+68300694 Msa0698110:CDS
TGAATATCCAGTGGTACTCT+AGG 0.457880 4_4:-68300687 None:intergenic
GTGATTTGGGTTTGTCATTG+AGG 0.459521 4_4:+68299585 Msa0698110:CDS
CGATAGTAGGCACGTGGACA+TGG 0.470350 4_4:-68299962 None:intergenic
ATCTTCTATTTCACCAGCTG+TGG 0.470676 4_4:-68298650 None:intergenic
TGATGGTCCTTCACCACTTG+TGG 0.487925 4_4:-68299468 None:intergenic
ACCCTAGCCTTTCTATTAGG+AGG 0.495222 4_4:-68299755 None:intergenic
AGACGACACGAAAATAAAAC+AGG 0.495687 4_4:+68298705 Msa0698110:CDS
CCCTCCTAATAGAAAGGCTA+GGG 0.503705 4_4:+68299754 Msa0698110:CDS
AGAAAATAATAATAAAAGAA+AGG 0.505035 4_4:+68299254 Msa0698110:CDS
TGTTTCCTAACTGGACAGCC+TGG 0.509897 4_4:-68299998 None:intergenic
ATACTAATTACAACATATGA+AGG 0.514191 4_4:+68300264 Msa0698110:CDS
TGCTAGTACTACTCTGCTGT+TGG 0.516325 4_4:-68300632 None:intergenic
ACCACTGGATATTCATGATA+GGG 0.516884 4_4:+68300695 Msa0698110:CDS
TATGGACAGAAAATAGCAAA+AGG 0.518587 4_4:+68299935 Msa0698110:CDS
TGTGAAAGAGAATGATGAGA+AGG 0.524014 4_4:+68298612 Msa0698110:CDS
CCCTAGCCTTTCTATTAGGA+GGG 0.524327 4_4:-68299754 None:intergenic
GATACTGAGGGAAATAAAGA+AGG 0.534250 4_4:+68299635 Msa0698110:CDS
GCAGTTGCACCAACAGGTAG+TGG 0.543336 4_4:-68300300 None:intergenic
TTATTCCCCTCCTAATAGAA+AGG 0.546213 4_4:+68299748 Msa0698110:CDS
GCAACAGCAAGCCTAAACTT+AGG 0.549893 4_4:-68300774 None:intergenic
TCATAACCCTAGAGTACCAC+TGG 0.551641 4_4:+68300680 Msa0698110:CDS
GACAATAATGCAGCCACAAG+TGG 0.553171 4_4:+68299455 Msa0698110:CDS
AGATGAATGATGGATGTCAA+TGG 0.556326 4_4:+68299906 Msa0698110:intron
AGCAACAGTACAACGATAGT+AGG 0.557840 4_4:-68299975 None:intergenic
AGTGCAGAATAAAATGCAAA+GGG 0.560508 4_4:+68299688 Msa0698110:CDS
CCCCTCCTAATAGAAAGGCT+AGG 0.560534 4_4:+68299753 Msa0698110:CDS
TATCGTTGTACTGTTGCTCC+AGG 0.560802 4_4:+68299980 Msa0698110:CDS
ACCTGTTGGTGCAACTGCAA+TGG 0.566391 4_4:+68300305 Msa0698110:CDS
AATGCAGCCACAAGTGGTGA+AGG 0.567792 4_4:+68299461 Msa0698110:CDS
TCATCAGTAATATTGTTTGG+TGG 0.568590 4_4:-68299545 None:intergenic
CCTAGCCTTTCTATTAGGAG+GGG 0.569534 4_4:-68299753 None:intergenic
GTTCATTATTATTATTGGTG+AGG 0.569658 4_4:-68300518 None:intergenic
GAATATCCAGTGGTACTCTA+GGG 0.576532 4_4:-68300686 None:intergenic
GAAGTACATGAAGCCACAGC+TGG 0.577747 4_4:+68298637 Msa0698110:CDS
AAACAAAGCATTGAGGAAAG+TGG 0.581597 4_4:+68299176 Msa0698110:CDS
CAGTGCAGAATAAAATGCAA+AGG 0.585438 4_4:+68299687 Msa0698110:CDS
TAAAATGCAAAGGGTACATG+AGG 0.591092 4_4:+68299697 Msa0698110:CDS
CATAACCATCCACTACCTGT+TGG 0.598750 4_4:+68300291 Msa0698110:CDS
AAGTGCCTTAGAAATGGAGA+TGG 0.601274 4_4:+68299137 Msa0698110:CDS
GGAGCTGGAGCTACCTGCAG+TGG 0.606765 4_4:-68300562 None:intergenic
ATTCATGATAGGGTTTGGAA+AGG 0.609091 4_4:+68300705 Msa0698110:CDS
GGCTTCAACAGCTTCAGCAG+CGG 0.619613 4_4:+68300326 Msa0698110:CDS
AAGAAGAAAACAAAGCATTG+AGG 0.626884 4_4:+68299169 Msa0698110:CDS
CAAAGCATTGAGGAAAGTGG+TGG 0.629030 4_4:+68299179 Msa0698110:CDS
TTGCACCAACAGGTAGTGGA+TGG 0.629935 4_4:-68300296 None:intergenic
TTGAAGATTGGTTTAATGGG+TGG 0.629949 4_4:-68300446 None:intergenic
AACCCCAATGATCCATCCCA+AGG 0.633360 4_4:+68300483 Msa0698110:CDS
GCATGAGTAGTAGTAACACT+AGG 0.638304 4_4:-68299722 None:intergenic
CACGTGTCAGAGAGATACTG+AGG 0.656234 4_4:+68299622 Msa0698110:CDS
TTCCTTGGGATGGATCATTG+GGG 0.675100 4_4:-68300485 None:intergenic
ACCCTATCATGAATATCCAG+TGG 0.685743 4_4:-68300696 None:intergenic
AGCAACAACACTACTACACG+TGG 0.698919 4_4:+68300828 Msa0698110:CDS
GTACAACGATAGTAGGCACG+TGG 0.706885 4_4:-68299968 None:intergenic
ACGTGTCAGAGAGATACTGA+GGG 0.717249 4_4:+68299623 Msa0698110:CDS
CCTGCAGTGGAAAATCGTCG+CGG 0.769202 4_4:-68300549 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCTTTTATTATTATTTTCT+TGG - chr4_4:68299254-68299273 None:intergenic 10.0%
!! AGAAAATAATAATAAAAGAA+AGG + chr4_4:68299254-68299273 Msa0698110:CDS 10.0%
!! TTATTATATTAAACACAATA+GGG - chr4_4:68299382-68299401 None:intergenic 10.0%
!! ATTATTATATTAAACACAAT+AGG - chr4_4:68299383-68299402 None:intergenic 10.0%
!!! CAACTATTATTAATTTTATT+TGG + chr4_4:68300041-68300060 Msa0698110:intron 10.0%
!! AATATATTAATTCTTAAGAT+CGG - chr4_4:68300195-68300214 None:intergenic 10.0%
!!! TTCTTTTATTATTATTTTCT+TGG - chr4_4:68299254-68299273 None:intergenic 10.0%
!! AGAAAATAATAATAAAAGAA+AGG + chr4_4:68299254-68299273 Msa0698110:CDS 10.0%
!! TTATTATATTAAACACAATA+GGG - chr4_4:68299382-68299401 None:intergenic 10.0%
!! ATTATTATATTAAACACAAT+AGG - chr4_4:68299383-68299402 None:intergenic 10.0%
!!! CAACTATTATTAATTTTATT+TGG + chr4_4:68300041-68300060 Msa0698110:intron 10.0%
!! AATATATTAATTCTTAAGAT+CGG - chr4_4:68300195-68300214 None:intergenic 10.0%
!! TAACTCTTGAAAATTAAAAT+AGG + chr4_4:68299058-68299077 Msa0698110:intron 15.0%
!! TAACTCTTGAAAATTAAAAT+AGG + chr4_4:68299058-68299077 Msa0698110:intron 15.0%
!! ATAAGCAACAATATCAATAT+TGG - chr4_4:68298786-68298805 None:intergenic 20.0%
!! TGAAAAATTTGTCTCATTAA+AGG - chr4_4:68298832-68298851 None:intergenic 20.0%
!! ATACTATTGAAGAGAAAAAA+TGG - chr4_4:68298870-68298889 None:intergenic 20.0%
!!! TAGATGAAGAGTATAATTAA+GGG - chr4_4:68298912-68298931 None:intergenic 20.0%
!!! TTAGATGAAGAGTATAATTA+AGG - chr4_4:68298913-68298932 None:intergenic 20.0%
!! GAAAATTAAAATAGGTATCT+AGG + chr4_4:68299066-68299085 Msa0698110:intron 20.0%
!! ATACTAATTACAACATATGA+AGG + chr4_4:68300264-68300283 Msa0698110:CDS 20.0%
!! AATCCTAATATTTCAGATTA+TGG + chr4_4:68300375-68300394 Msa0698110:CDS 20.0%
!!! AAACCATAATCTGAAATATT+AGG - chr4_4:68300381-68300400 None:intergenic 20.0%
!! ATTATTAGTGTAAGGATTAA+AGG - chr4_4:68300418-68300437 None:intergenic 20.0%
!!! TATTTGAAGATTGGTTTAAT+GGG - chr4_4:68300452-68300471 None:intergenic 20.0%
!!! ATATTTGAAGATTGGTTTAA+TGG - chr4_4:68300453-68300472 None:intergenic 20.0%
!! GTTGAGTTCATTATTATTAT+TGG - chr4_4:68300526-68300545 None:intergenic 20.0%
!! ATAAGCAACAATATCAATAT+TGG - chr4_4:68298786-68298805 None:intergenic 20.0%
!! TGAAAAATTTGTCTCATTAA+AGG - chr4_4:68298832-68298851 None:intergenic 20.0%
!! ATACTATTGAAGAGAAAAAA+TGG - chr4_4:68298870-68298889 None:intergenic 20.0%
!!! TAGATGAAGAGTATAATTAA+GGG - chr4_4:68298912-68298931 None:intergenic 20.0%
!!! TTAGATGAAGAGTATAATTA+AGG - chr4_4:68298913-68298932 None:intergenic 20.0%
!! GAAAATTAAAATAGGTATCT+AGG + chr4_4:68299066-68299085 Msa0698110:intron 20.0%
!! ATACTAATTACAACATATGA+AGG + chr4_4:68300264-68300283 Msa0698110:CDS 20.0%
!! AATCCTAATATTTCAGATTA+TGG + chr4_4:68300375-68300394 Msa0698110:CDS 20.0%
!!! AAACCATAATCTGAAATATT+AGG - chr4_4:68300381-68300400 None:intergenic 20.0%
!! ATTATTAGTGTAAGGATTAA+AGG - chr4_4:68300418-68300437 None:intergenic 20.0%
!!! TATTTGAAGATTGGTTTAAT+GGG - chr4_4:68300452-68300471 None:intergenic 20.0%
!!! ATATTTGAAGATTGGTTTAA+TGG - chr4_4:68300453-68300472 None:intergenic 20.0%
!! GTTGAGTTCATTATTATTAT+TGG - chr4_4:68300526-68300545 None:intergenic 20.0%
! TTAAATCTACTTGTCTTCAA+TGG - chr4_4:68298752-68298771 None:intergenic 25.0%
! TCTTCAATAGTATCTATGTT+TGG + chr4_4:68298877-68298896 Msa0698110:intron 25.0%
! CTTCAATAGTATCTATGTTT+GGG + chr4_4:68298878-68298897 Msa0698110:intron 25.0%
!! AGATGAAGAGTATAATTAAG+GGG - chr4_4:68298911-68298930 None:intergenic 25.0%
! TCATCATCAGTAATATTGTT+TGG - chr4_4:68299551-68299570 None:intergenic 25.0%
! GATGAAACTAATTATTCTCA+TGG + chr4_4:68299874-68299893 Msa0698110:intron 25.0%
!!! GTTTTTTGAAAGATGAATGA+TGG + chr4_4:68299896-68299915 Msa0698110:intron 25.0%
! ATATATACTTGTTTCCTAAC+TGG - chr4_4:68300010-68300029 None:intergenic 25.0%
!!! AATTTTATTTGGATCTTCTG+CGG + chr4_4:68300052-68300071 Msa0698110:intron 25.0%
! TGAAAGCTATTATTAGTGTA+AGG - chr4_4:68300426-68300445 None:intergenic 25.0%
! TGCTTCTAATATTTGAAGAT+TGG - chr4_4:68300461-68300480 None:intergenic 25.0%
! GTTCATTATTATTATTGGTG+AGG - chr4_4:68300521-68300540 None:intergenic 25.0%
! TTAAATCTACTTGTCTTCAA+TGG - chr4_4:68298752-68298771 None:intergenic 25.0%
! TCTTCAATAGTATCTATGTT+TGG + chr4_4:68298877-68298896 Msa0698110:intron 25.0%
! CTTCAATAGTATCTATGTTT+GGG + chr4_4:68298878-68298897 Msa0698110:intron 25.0%
!! AGATGAAGAGTATAATTAAG+GGG - chr4_4:68298911-68298930 None:intergenic 25.0%
! TCATCATCAGTAATATTGTT+TGG - chr4_4:68299551-68299570 None:intergenic 25.0%
! GATGAAACTAATTATTCTCA+TGG + chr4_4:68299874-68299893 Msa0698110:intron 25.0%
!!! GTTTTTTGAAAGATGAATGA+TGG + chr4_4:68299896-68299915 Msa0698110:intron 25.0%
! ATATATACTTGTTTCCTAAC+TGG - chr4_4:68300010-68300029 None:intergenic 25.0%
!!! AATTTTATTTGGATCTTCTG+CGG + chr4_4:68300052-68300071 Msa0698110:intron 25.0%
! TGAAAGCTATTATTAGTGTA+AGG - chr4_4:68300426-68300445 None:intergenic 25.0%
! TGCTTCTAATATTTGAAGAT+TGG - chr4_4:68300461-68300480 None:intergenic 25.0%
! GTTCATTATTATTATTGGTG+AGG - chr4_4:68300521-68300540 None:intergenic 25.0%
AGAAGAAGAATCCAAAAAGA+TGG + chr4_4:68298519-68298538 Msa0698110:CDS 30.0%
! GAGATCAATTTCCATCTTTT+TGG - chr4_4:68298533-68298552 None:intergenic 30.0%
!! AAGAAGAAAACAAAGCATTG+AGG + chr4_4:68299169-68299188 Msa0698110:CDS 30.0%
ATCTCATGAAATGATCTTGA+TGG - chr4_4:68299488-68299507 None:intergenic 30.0%
! GTAATATTGTTTGGTGGTAA+TGG - chr4_4:68299542-68299561 None:intergenic 30.0%
TCATCAGTAATATTGTTTGG+TGG - chr4_4:68299548-68299567 None:intergenic 30.0%
TAGTATAAGTGAGAGTGATT+TGG + chr4_4:68299571-68299590 Msa0698110:CDS 30.0%
AGTATAAGTGAGAGTGATTT+GGG + chr4_4:68299572-68299591 Msa0698110:CDS 30.0%
AGAAGGCAAAAAAGAACAAT+TGG + chr4_4:68299652-68299671 Msa0698110:CDS 30.0%
GAAGGCAAAAAAGAACAATT+GGG + chr4_4:68299653-68299672 Msa0698110:CDS 30.0%
AGTGCAGAATAAAATGCAAA+GGG + chr4_4:68299688-68299707 Msa0698110:CDS 30.0%
AAAGAACTTTAAACTCACTG+TGG - chr4_4:68299807-68299826 None:intergenic 30.0%
TATGGACAGAAAATAGCAAA+AGG + chr4_4:68299935-68299954 Msa0698110:CDS 30.0%
GTAAGGATTAAAGGATTGTT+GGG - chr4_4:68300409-68300428 None:intergenic 30.0%
TGTAAGGATTAAAGGATTGT+TGG - chr4_4:68300410-68300429 None:intergenic 30.0%
! AGGTTGATCAGTTGAATTAT+TGG - chr4_4:68300586-68300605 None:intergenic 30.0%
AGAAGAAGAATCCAAAAAGA+TGG + chr4_4:68298519-68298538 Msa0698110:CDS 30.0%
! GAGATCAATTTCCATCTTTT+TGG - chr4_4:68298533-68298552 None:intergenic 30.0%
!! AAGAAGAAAACAAAGCATTG+AGG + chr4_4:68299169-68299188 Msa0698110:CDS 30.0%
ATCTCATGAAATGATCTTGA+TGG - chr4_4:68299488-68299507 None:intergenic 30.0%
! GTAATATTGTTTGGTGGTAA+TGG - chr4_4:68299542-68299561 None:intergenic 30.0%
TCATCAGTAATATTGTTTGG+TGG - chr4_4:68299548-68299567 None:intergenic 30.0%
TAGTATAAGTGAGAGTGATT+TGG + chr4_4:68299571-68299590 Msa0698110:CDS 30.0%
AGTATAAGTGAGAGTGATTT+GGG + chr4_4:68299572-68299591 Msa0698110:CDS 30.0%
AGAAGGCAAAAAAGAACAAT+TGG + chr4_4:68299652-68299671 Msa0698110:CDS 30.0%
GAAGGCAAAAAAGAACAATT+GGG + chr4_4:68299653-68299672 Msa0698110:CDS 30.0%
AGTGCAGAATAAAATGCAAA+GGG + chr4_4:68299688-68299707 Msa0698110:CDS 30.0%
AAAGAACTTTAAACTCACTG+TGG - chr4_4:68299807-68299826 None:intergenic 30.0%
TATGGACAGAAAATAGCAAA+AGG + chr4_4:68299935-68299954 Msa0698110:CDS 30.0%
GTAAGGATTAAAGGATTGTT+GGG - chr4_4:68300409-68300428 None:intergenic 30.0%
TGTAAGGATTAAAGGATTGT+TGG - chr4_4:68300410-68300429 None:intergenic 30.0%
! AGGTTGATCAGTTGAATTAT+TGG - chr4_4:68300586-68300605 None:intergenic 30.0%
TGTGAAAGAGAATGATGAGA+AGG + chr4_4:68298612-68298631 Msa0698110:CDS 35.0%
AGACGACACGAAAATAAAAC+AGG + chr4_4:68298705-68298724 Msa0698110:CDS 35.0%
ACAGTTAAGTGCCTTAGAAA+TGG + chr4_4:68299131-68299150 Msa0698110:intron 35.0%
ACTTTCCATCTCCATTTCTA+AGG - chr4_4:68299145-68299164 None:intergenic 35.0%
!! AAACAAAGCATTGAGGAAAG+TGG + chr4_4:68299176-68299195 Msa0698110:CDS 35.0%
GATACTGAGGGAAATAAAGA+AGG + chr4_4:68299635-68299654 Msa0698110:CDS 35.0%
CAGTGCAGAATAAAATGCAA+AGG + chr4_4:68299687-68299706 Msa0698110:CDS 35.0%
! TAAAATGCAAAGGGTACATG+AGG + chr4_4:68299697-68299716 Msa0698110:CDS 35.0%
TTATTCCCCTCCTAATAGAA+AGG + chr4_4:68299748-68299767 Msa0698110:CDS 35.0%
!! AGATGAATGATGGATGTCAA+TGG + chr4_4:68299906-68299925 Msa0698110:intron 35.0%
GGATGTCAATGGAGAAAATA+TGG + chr4_4:68299917-68299936 Msa0698110:CDS 35.0%
ACTACTTTGCAACCAATACA+AGG - chr4_4:68300091-68300110 None:intergenic 35.0%
!! TGTATTGGTTGCAAAGTAGT+TGG + chr4_4:68300091-68300110 Msa0698110:intron 35.0%
!! TTGAAGATTGGTTTAATGGG+TGG - chr4_4:68300449-68300468 None:intergenic 35.0%
TCAAAAACAATTCCTTGGGA+TGG - chr4_4:68300498-68300517 None:intergenic 35.0%
GAGGTCAAAAACAATTCCTT+GGG - chr4_4:68300502-68300521 None:intergenic 35.0%
TGAGGTCAAAAACAATTCCT+TGG - chr4_4:68300503-68300522 None:intergenic 35.0%
ATCAGTTGAATTATTGGAGC+TGG - chr4_4:68300580-68300599 None:intergenic 35.0%
! TTTTGCATCCAAGAAAAACG+AGG - chr4_4:68300606-68300625 None:intergenic 35.0%
TACCACTGGATATTCATGAT+AGG + chr4_4:68300694-68300713 Msa0698110:CDS 35.0%
ACCACTGGATATTCATGATA+GGG + chr4_4:68300695-68300714 Msa0698110:CDS 35.0%
TGGATATTCATGATAGGGTT+TGG + chr4_4:68300700-68300719 Msa0698110:CDS 35.0%
ATTCATGATAGGGTTTGGAA+AGG + chr4_4:68300705-68300724 Msa0698110:CDS 35.0%
TTGCATCAGATCCTAAGTTT+AGG + chr4_4:68300763-68300782 Msa0698110:CDS 35.0%
TGTGAAAGAGAATGATGAGA+AGG + chr4_4:68298612-68298631 Msa0698110:CDS 35.0%
AGACGACACGAAAATAAAAC+AGG + chr4_4:68298705-68298724 Msa0698110:CDS 35.0%
ACAGTTAAGTGCCTTAGAAA+TGG + chr4_4:68299131-68299150 Msa0698110:intron 35.0%
ACTTTCCATCTCCATTTCTA+AGG - chr4_4:68299145-68299164 None:intergenic 35.0%
!! AAACAAAGCATTGAGGAAAG+TGG + chr4_4:68299176-68299195 Msa0698110:CDS 35.0%
GATACTGAGGGAAATAAAGA+AGG + chr4_4:68299635-68299654 Msa0698110:CDS 35.0%
CAGTGCAGAATAAAATGCAA+AGG + chr4_4:68299687-68299706 Msa0698110:CDS 35.0%
! TAAAATGCAAAGGGTACATG+AGG + chr4_4:68299697-68299716 Msa0698110:CDS 35.0%
TTATTCCCCTCCTAATAGAA+AGG + chr4_4:68299748-68299767 Msa0698110:CDS 35.0%
!! AGATGAATGATGGATGTCAA+TGG + chr4_4:68299906-68299925 Msa0698110:intron 35.0%
GGATGTCAATGGAGAAAATA+TGG + chr4_4:68299917-68299936 Msa0698110:CDS 35.0%
ACTACTTTGCAACCAATACA+AGG - chr4_4:68300091-68300110 None:intergenic 35.0%
!! TGTATTGGTTGCAAAGTAGT+TGG + chr4_4:68300091-68300110 Msa0698110:intron 35.0%
!! TTGAAGATTGGTTTAATGGG+TGG - chr4_4:68300449-68300468 None:intergenic 35.0%
TCAAAAACAATTCCTTGGGA+TGG - chr4_4:68300498-68300517 None:intergenic 35.0%
GAGGTCAAAAACAATTCCTT+GGG - chr4_4:68300502-68300521 None:intergenic 35.0%
TGAGGTCAAAAACAATTCCT+TGG - chr4_4:68300503-68300522 None:intergenic 35.0%
ATCAGTTGAATTATTGGAGC+TGG - chr4_4:68300580-68300599 None:intergenic 35.0%
! TTTTGCATCCAAGAAAAACG+AGG - chr4_4:68300606-68300625 None:intergenic 35.0%
TACCACTGGATATTCATGAT+AGG + chr4_4:68300694-68300713 Msa0698110:CDS 35.0%
ACCACTGGATATTCATGATA+GGG + chr4_4:68300695-68300714 Msa0698110:CDS 35.0%
TGGATATTCATGATAGGGTT+TGG + chr4_4:68300700-68300719 Msa0698110:CDS 35.0%
ATTCATGATAGGGTTTGGAA+AGG + chr4_4:68300705-68300724 Msa0698110:CDS 35.0%
TTGCATCAGATCCTAAGTTT+AGG + chr4_4:68300763-68300782 Msa0698110:CDS 35.0%
ATCTTCTATTTCACCAGCTG+TGG - chr4_4:68298653-68298672 None:intergenic 40.0%
AAGTGCCTTAGAAATGGAGA+TGG + chr4_4:68299137-68299156 Msa0698110:CDS 40.0%
! GTGATTTGGGTTTGTCATTG+AGG + chr4_4:68299585-68299604 Msa0698110:CDS 40.0%
TCTGACACGTGTTTATTGTC+TGG - chr4_4:68299613-68299632 None:intergenic 40.0%
GCATGAGTAGTAGTAACACT+AGG - chr4_4:68299725-68299744 None:intergenic 40.0%
! GAAACCCTAGCCTTTCTATT+AGG - chr4_4:68299761-68299780 None:intergenic 40.0%
AGCAACAGTACAACGATAGT+AGG - chr4_4:68299978-68299997 None:intergenic 40.0%
TTTATTTGGATCTTCTGCGG+TGG + chr4_4:68300055-68300074 Msa0698110:intron 40.0%
GACTGCATAGTTGTTAGGTT+AGG - chr4_4:68300138-68300157 None:intergenic 40.0%
TGAGTGACTGCATAGTTGTT+AGG - chr4_4:68300143-68300162 None:intergenic 40.0%
AGCGGCTTCATTTATGTTAC+TGG + chr4_4:68300344-68300363 Msa0698110:CDS 40.0%
ATTCCTTGGGATGGATCATT+GGG - chr4_4:68300489-68300508 None:intergenic 40.0%
AATTCCTTGGGATGGATCAT+TGG - chr4_4:68300490-68300509 None:intergenic 40.0%
!! CTGATCAACCTCGTTTTTCT+TGG + chr4_4:68300595-68300614 Msa0698110:CDS 40.0%
GAATATCCAGTGGTACTCTA+GGG - chr4_4:68300689-68300708 None:intergenic 40.0%
TGAATATCCAGTGGTACTCT+AGG - chr4_4:68300690-68300709 None:intergenic 40.0%
ACCCTATCATGAATATCCAG+TGG - chr4_4:68300699-68300718 None:intergenic 40.0%
ATCTTCTATTTCACCAGCTG+TGG - chr4_4:68298653-68298672 None:intergenic 40.0%
AAGTGCCTTAGAAATGGAGA+TGG + chr4_4:68299137-68299156 Msa0698110:CDS 40.0%
! GTGATTTGGGTTTGTCATTG+AGG + chr4_4:68299585-68299604 Msa0698110:CDS 40.0%
TCTGACACGTGTTTATTGTC+TGG - chr4_4:68299613-68299632 None:intergenic 40.0%
GCATGAGTAGTAGTAACACT+AGG - chr4_4:68299725-68299744 None:intergenic 40.0%
! GAAACCCTAGCCTTTCTATT+AGG - chr4_4:68299761-68299780 None:intergenic 40.0%
AGCAACAGTACAACGATAGT+AGG - chr4_4:68299978-68299997 None:intergenic 40.0%
TTTATTTGGATCTTCTGCGG+TGG + chr4_4:68300055-68300074 Msa0698110:intron 40.0%
GACTGCATAGTTGTTAGGTT+AGG - chr4_4:68300138-68300157 None:intergenic 40.0%
TGAGTGACTGCATAGTTGTT+AGG - chr4_4:68300143-68300162 None:intergenic 40.0%
AGCGGCTTCATTTATGTTAC+TGG + chr4_4:68300344-68300363 Msa0698110:CDS 40.0%
ATTCCTTGGGATGGATCATT+GGG - chr4_4:68300489-68300508 None:intergenic 40.0%
AATTCCTTGGGATGGATCAT+TGG - chr4_4:68300490-68300509 None:intergenic 40.0%
!! CTGATCAACCTCGTTTTTCT+TGG + chr4_4:68300595-68300614 Msa0698110:CDS 40.0%
GAATATCCAGTGGTACTCTA+GGG - chr4_4:68300689-68300708 None:intergenic 40.0%
TGAATATCCAGTGGTACTCT+AGG - chr4_4:68300690-68300709 None:intergenic 40.0%
ACCCTATCATGAATATCCAG+TGG - chr4_4:68300699-68300718 None:intergenic 40.0%
!! CAAAGCATTGAGGAAAGTGG+TGG + chr4_4:68299179-68299198 Msa0698110:CDS 45.0%
TGATAGAGATCTCACTCAGC+AGG + chr4_4:68299406-68299425 Msa0698110:intron 45.0%
GACAATAATGCAGCCACAAG+TGG + chr4_4:68299455-68299474 Msa0698110:CDS 45.0%
ACGTGTCAGAGAGATACTGA+GGG + chr4_4:68299623-68299642 Msa0698110:CDS 45.0%
! CCTAGCCTTTCTATTAGGAG+GGG - chr4_4:68299756-68299775 None:intergenic 45.0%
! CCCTAGCCTTTCTATTAGGA+GGG - chr4_4:68299757-68299776 None:intergenic 45.0%
CCCTCCTAATAGAAAGGCTA+GGG + chr4_4:68299754-68299773 Msa0698110:CDS 45.0%
! ACCCTAGCCTTTCTATTAGG+AGG - chr4_4:68299758-68299777 None:intergenic 45.0%
TATCGTTGTACTGTTGCTCC+AGG + chr4_4:68299980-68299999 Msa0698110:CDS 45.0%
GGTTGCAAAGTAGTTGGATC+AGG + chr4_4:68300097-68300116 Msa0698110:intron 45.0%
CATAACCATCCACTACCTGT+TGG + chr4_4:68300291-68300310 Msa0698110:CDS 45.0%
TTCCTTGGGATGGATCATTG+GGG - chr4_4:68300488-68300507 None:intergenic 45.0%
TGCTAGTACTACTCTGCTGT+TGG - chr4_4:68300635-68300654 None:intergenic 45.0%
! TCATAACCCTAGAGTACCAC+TGG + chr4_4:68300680-68300699 Msa0698110:CDS 45.0%
GCAACAGCAAGCCTAAACTT+AGG - chr4_4:68300777-68300796 None:intergenic 45.0%
AGCAACAACACTACTACACG+TGG + chr4_4:68300828-68300847 Msa0698110:CDS 45.0%
!! CAAAGCATTGAGGAAAGTGG+TGG + chr4_4:68299179-68299198 Msa0698110:CDS 45.0%
TGATAGAGATCTCACTCAGC+AGG + chr4_4:68299406-68299425 Msa0698110:intron 45.0%
GACAATAATGCAGCCACAAG+TGG + chr4_4:68299455-68299474 Msa0698110:CDS 45.0%
ACGTGTCAGAGAGATACTGA+GGG + chr4_4:68299623-68299642 Msa0698110:CDS 45.0%
! CCTAGCCTTTCTATTAGGAG+GGG - chr4_4:68299756-68299775 None:intergenic 45.0%
! CCCTAGCCTTTCTATTAGGA+GGG - chr4_4:68299757-68299776 None:intergenic 45.0%
CCCTCCTAATAGAAAGGCTA+GGG + chr4_4:68299754-68299773 Msa0698110:CDS 45.0%
! ACCCTAGCCTTTCTATTAGG+AGG - chr4_4:68299758-68299777 None:intergenic 45.0%
TATCGTTGTACTGTTGCTCC+AGG + chr4_4:68299980-68299999 Msa0698110:CDS 45.0%
GGTTGCAAAGTAGTTGGATC+AGG + chr4_4:68300097-68300116 Msa0698110:intron 45.0%
CATAACCATCCACTACCTGT+TGG + chr4_4:68300291-68300310 Msa0698110:CDS 45.0%
TTCCTTGGGATGGATCATTG+GGG - chr4_4:68300488-68300507 None:intergenic 45.0%
TGCTAGTACTACTCTGCTGT+TGG - chr4_4:68300635-68300654 None:intergenic 45.0%
! TCATAACCCTAGAGTACCAC+TGG + chr4_4:68300680-68300699 Msa0698110:CDS 45.0%
GCAACAGCAAGCCTAAACTT+AGG - chr4_4:68300777-68300796 None:intergenic 45.0%
AGCAACAACACTACTACACG+TGG + chr4_4:68300828-68300847 Msa0698110:CDS 45.0%
!!! TTTTAATTTTTGTTTAATAT+AGG + chr4_4:68300215-68300234 Msa0698110:intron 5.0%
!!! TTTTAATTTTTGTTTAATAT+AGG + chr4_4:68300215-68300234 Msa0698110:intron 5.0%
GAAGTACATGAAGCCACAGC+TGG + chr4_4:68298637-68298656 Msa0698110:CDS 50.0%
AATGCAGCCACAAGTGGTGA+AGG + chr4_4:68299461-68299480 Msa0698110:CDS 50.0%
TGATGGTCCTTCACCACTTG+TGG - chr4_4:68299471-68299490 None:intergenic 50.0%
CACGTGTCAGAGAGATACTG+AGG + chr4_4:68299622-68299641 Msa0698110:CDS 50.0%
CCCCTCCTAATAGAAAGGCT+AGG + chr4_4:68299753-68299772 Msa0698110:CDS 50.0%
GTACAACGATAGTAGGCACG+TGG - chr4_4:68299971-68299990 None:intergenic 50.0%
TGTTTCCTAACTGGACAGCC+TGG - chr4_4:68300001-68300020 None:intergenic 50.0%
!! TTGCACCAACAGGTAGTGGA+TGG - chr4_4:68300299-68300318 None:intergenic 50.0%
ACCTGTTGGTGCAACTGCAA+TGG + chr4_4:68300305-68300324 Msa0698110:CDS 50.0%
AACCCCAATGATCCATCCCA+AGG + chr4_4:68300483-68300502 Msa0698110:CDS 50.0%
GAAGTACATGAAGCCACAGC+TGG + chr4_4:68298637-68298656 Msa0698110:CDS 50.0%
AATGCAGCCACAAGTGGTGA+AGG + chr4_4:68299461-68299480 Msa0698110:CDS 50.0%
TGATGGTCCTTCACCACTTG+TGG - chr4_4:68299471-68299490 None:intergenic 50.0%
CACGTGTCAGAGAGATACTG+AGG + chr4_4:68299622-68299641 Msa0698110:CDS 50.0%
CCCCTCCTAATAGAAAGGCT+AGG + chr4_4:68299753-68299772 Msa0698110:CDS 50.0%
GTACAACGATAGTAGGCACG+TGG - chr4_4:68299971-68299990 None:intergenic 50.0%
TGTTTCCTAACTGGACAGCC+TGG - chr4_4:68300001-68300020 None:intergenic 50.0%
!! TTGCACCAACAGGTAGTGGA+TGG - chr4_4:68300299-68300318 None:intergenic 50.0%
ACCTGTTGGTGCAACTGCAA+TGG + chr4_4:68300305-68300324 Msa0698110:CDS 50.0%
AACCCCAATGATCCATCCCA+AGG + chr4_4:68300483-68300502 Msa0698110:CDS 50.0%
CGATAGTAGGCACGTGGACA+TGG - chr4_4:68299965-68299984 None:intergenic 55.0%
TTGCTCCAGGCTGTCCAGTT+AGG + chr4_4:68299993-68300012 Msa0698110:CDS 55.0%
GCAGTTGCACCAACAGGTAG+TGG - chr4_4:68300303-68300322 None:intergenic 55.0%
GCCATTGCAGTTGCACCAAC+AGG - chr4_4:68300309-68300328 None:intergenic 55.0%
GGCTTCAACAGCTTCAGCAG+CGG + chr4_4:68300326-68300345 Msa0698110:CDS 55.0%
CCTGCAGTGGAAAATCGTCG+CGG - chr4_4:68300552-68300571 None:intergenic 55.0%
CGATAGTAGGCACGTGGACA+TGG - chr4_4:68299965-68299984 None:intergenic 55.0%
TTGCTCCAGGCTGTCCAGTT+AGG + chr4_4:68299993-68300012 Msa0698110:CDS 55.0%
GCAGTTGCACCAACAGGTAG+TGG - chr4_4:68300303-68300322 None:intergenic 55.0%
GCCATTGCAGTTGCACCAAC+AGG - chr4_4:68300309-68300328 None:intergenic 55.0%
GGCTTCAACAGCTTCAGCAG+CGG + chr4_4:68300326-68300345 Msa0698110:CDS 55.0%
CCTGCAGTGGAAAATCGTCG+CGG - chr4_4:68300552-68300571 None:intergenic 55.0%
TTGGATCTTCTGCGGTGGCG+CGG + chr4_4:68300060-68300079 Msa0698110:intron 60.0%
! CCGCGACGATTTTCCACTGC+AGG + chr4_4:68300549-68300568 Msa0698110:CDS 60.0%
TTGGATCTTCTGCGGTGGCG+CGG + chr4_4:68300060-68300079 Msa0698110:intron 60.0%
! CCGCGACGATTTTCCACTGC+AGG + chr4_4:68300549-68300568 Msa0698110:CDS 60.0%
GGCGCGGCTGCACCTTGTAT+TGG + chr4_4:68300076-68300095 Msa0698110:intron 65.0%
GGAGCTGGAGCTACCTGCAG+TGG - chr4_4:68300565-68300584 None:intergenic 65.0%
GGCGCGGCTGCACCTTGTAT+TGG + chr4_4:68300076-68300095 Msa0698110:intron 65.0%
GGAGCTGGAGCTACCTGCAG+TGG - chr4_4:68300565-68300584 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 68298511 68300863 68298511 ID=Msa0698110;Name=Msa0698110
chr4_4 mRNA 68298511 68300863 68298511 ID=Msa0698110-mRNA-1;Parent=Msa0698110;Name=Msa0698110-mRNA-1;_AED=0.05;_eAED=0.06;_QI=0|0.25|0|1|1|1|5|0|492
chr4_4 exon 68298511 68298726 68298511 ID=Msa0698110-mRNA-1:exon:20287;Parent=Msa0698110-mRNA-1
chr4_4 exon 68299135 68299275 68299135 ID=Msa0698110-mRNA-1:exon:20288;Parent=Msa0698110-mRNA-1
chr4_4 exon 68299428 68299808 68299428 ID=Msa0698110-mRNA-1:exon:20289;Parent=Msa0698110-mRNA-1
chr4_4 exon 68299908 68300021 68299908 ID=Msa0698110-mRNA-1:exon:20290;Parent=Msa0698110-mRNA-1
chr4_4 exon 68300237 68300863 68300237 ID=Msa0698110-mRNA-1:exon:20291;Parent=Msa0698110-mRNA-1
chr4_4 CDS 68298511 68298726 68298511 ID=Msa0698110-mRNA-1:cds;Parent=Msa0698110-mRNA-1
chr4_4 CDS 68299135 68299275 68299135 ID=Msa0698110-mRNA-1:cds;Parent=Msa0698110-mRNA-1
chr4_4 CDS 68299428 68299808 68299428 ID=Msa0698110-mRNA-1:cds;Parent=Msa0698110-mRNA-1
chr4_4 CDS 68299908 68300021 68299908 ID=Msa0698110-mRNA-1:cds;Parent=Msa0698110-mRNA-1
chr4_4 CDS 68300237 68300863 68300237 ID=Msa0698110-mRNA-1:cds;Parent=Msa0698110-mRNA-1
Gene Sequence

>Msa0698110

ATGGGTAGAGAAGAAGAATCCAAAAAGATGGAAATTGATCTCTCTTTGAAGATAGATAGTGATGATGAGCGAAAAGAAGAAGAAGAAGTAGATCATGAGCTTGTGAAAGAGAATGATGAGAAGGAAGAAGTACATGAAGCCACAGCTGGTGAAATAGAAGATGATGATGCTTCAGTTATACAACTATCTTTGCAAGACGACACGAAAATAAAACAGTTAAGTGCCTTAGAAATGGAGATGGAAAGTATGAAAGAAGAAAACAAAGCATTGAGGAAAGTGGTGGAACAAACAATGAAAGACTACTATGATCTGCAAACAAAATTTTCAGTCATCCAAGAAAATAATAATAAAAGAAAGGATCGTCAACTTTCTCTCTCACTACAAGACAATAATGCAGCCACAAGTGGTGAAGGACCATCAAGATCATTTCATGAGATCTTTAGTCAAAAAATTAAAAGATCTTCATCTCCATTACCACCAAACAATATTACTGATGATGATAGTATAAGTGAGAGTGATTTGGGTTTGTCATTGAGGATCCAGACAATAAACACGTGTCAGAGAGATACTGAGGGAAATAAAGAAGGCAAAAAAGAACAATTGGGAAGTTTTGAATCAGTGCAGAATAAAATGCAAAGGGTACATGAGGTGCCTAGTGTTACTACTACTCATGCTGCTTATTCCCCTCCTAATAGAAAGGCTAGGGTTTCTGTTAGAGCAAGATGTGAAACTGCCACAATGAATGATGGATGTCAATGGAGAAAATATGGACAGAAAATAGCAAAAGGAAATCCATGTCCACGTGCCTACTATCGTTGTACTGTTGCTCCAGGCTGTCCAGTTAGGAAACAAGTGCAAAGATGTATAGATGACATGTCTATACTAATTACAACATATGAAGGAACACATAACCATCCACTACCTGTTGGTGCAACTGCAATGGCTTCAACAGCTTCAGCAGCGGCTTCATTTATGTTACTGGATTCAAGCAATCCTAATATTTCAGATTATGGTTTCACAACCCAACAATCCTTTAATCCTTACACTAATAATAGCTTTCACCACCCATTAAACCAATCTTCAAATATTAGAAGCATAAACCCCAATGATCCATCCCAAGGAATTGTTTTTGACCTCACCAATAATAATAATGAACTCAACGAACCGCGACGATTTTCCACTGCAGGTAGCTCCAGCTCCAATAATTCAACTGATCAACCTCGTTTTTCTTGGATGCAAAACAAATACCAACAGCAGAGTAGTACTAGCAATGCTAATATTGCAATGAACAATTTTCATAACCCTAGAGTACCACTGGATATTCATGATAGGGTTTGGAAAGGATCAGAAGAAAATAATAACAACAATGTGTCTGCAATTGCATCAGATCCTAAGTTTAGGCTTGCTGTTGCAGCTGCAATTTCATCACTCATGAATAAAGAAAGCAACAACACTACTACACGTGGTAGCAACAATTGA
Protein sequence

>Msa0698110

MGREEESKKMEIDLSLKIDSDDERKEEEEVDHELVKENDEKEEVHEATAGEIEDDDASVIQLSLQDDTKIKQLSALEMEMESMKEENKALRKVVEQTMKDYYDLQTKFSVIQENNNKRKDRQLSLSLQDNNAATSGEGPSRSFHEIFSQKIKRSSSPLPPNNITDDDSISESDLGLSLRIQTINTCQRDTEGNKEGKKEQLGSFESVQNKMQRVHEVPSVTTTHAAYSPPNRKARVSVRARCETATMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCIDDMSILITTYEGTHNHPLPVGATAMASTASAAASFMLLDSSNPNISDYGFTTQQSFNPYTNNSFHHPLNQSSNIRSINPNDPSQGIVFDLTNNNNELNEPRRFSTAGSSSSNNSTDQPRFSWMQNKYQQQSSTSNANIAMNNFHNPRVPLDIHDRVWKGSEENNNNNVSAIASDPKFRLAVAAAISSLMNKESNNTTTRGSNN*