Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0131600 | sp|Q84J78|SSBP_ARATH | 65.094 | 212 | 63 | 1 | 1 | 212 | 1 | 201 | 7.02e-96 | 280 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0131600 | G7I9F0 | 99.057 | 212 | 2 | 0 | 1 | 212 | 1 | 212 | 3.88e-154 | 434 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003890 | Msa0131600 | 0.806185 | 9.301050e-50 | -8.615850e-47 |
| Msa0011960 | Msa0131600 | 0.812552 | 4.004062e-51 | -8.615850e-47 |
| Msa0017510 | Msa0131600 | 0.811547 | 6.630678e-51 | -8.615850e-47 |
| Msa0029270 | Msa0131600 | 0.800765 | 1.236069e-48 | -8.615850e-47 |
| Msa0032430 | Msa0131600 | 0.809454 | 1.877127e-50 | -8.615850e-47 |
| Msa0032580 | Msa0131600 | 0.806486 | 8.036638e-50 | -8.615850e-47 |
| Msa0054480 | Msa0131600 | 0.823707 | 1.198540e-53 | -8.615850e-47 |
| Msa0061080 | Msa0131600 | 0.813731 | 2.205968e-51 | -8.615850e-47 |
| Msa0080200 | Msa0131600 | 0.824292 | 8.736255e-54 | -8.615850e-47 |
| Msa0084380 | Msa0131600 | 0.801714 | 7.902795e-49 | -8.615850e-47 |
| Msa0101700 | Msa0131600 | 0.810580 | 1.073889e-50 | -8.615850e-47 |
| Msa0105620 | Msa0131600 | 0.804101 | 2.539318e-49 | -8.615850e-47 |
| Msa0119960 | Msa0131600 | 0.802702 | 4.949092e-49 | -8.615850e-47 |
| Msa0127050 | Msa0131600 | 0.801993 | 6.926115e-49 | -8.615850e-47 |
| Msa0131600 | Msa0136070 | 0.819841 | 9.396229e-53 | -8.615850e-47 |
| Msa0131600 | Msa0136100 | 0.802486 | 5.482838e-49 | -8.615850e-47 |
| Msa0131600 | Msa0145440 | 0.812716 | 3.685444e-51 | -8.615850e-47 |
| Msa0131600 | Msa0150820 | 0.827698 | 1.354798e-54 | -8.615850e-47 |
| Msa0131600 | Msa0157290 | 0.811023 | 8.613741e-51 | -8.615850e-47 |
| Msa0131600 | Msa0160550 | 0.816233 | 6.144853e-52 | -8.615850e-47 |
| Msa0131600 | Msa0169310 | 0.810406 | 1.171359e-50 | -8.615850e-47 |
| Msa0131600 | Msa0171540 | 0.806533 | 7.856693e-50 | -8.615850e-47 |
| Msa0131600 | Msa0172070 | 0.811031 | 8.580932e-51 | -8.615850e-47 |
| Msa0131600 | Msa0187120 | 0.819432 | 1.164911e-52 | -8.615850e-47 |
| Msa0131600 | Msa0197660 | 0.813775 | 2.157856e-51 | -8.615850e-47 |
| Msa0131600 | Msa0228070 | 0.806273 | 8.911035e-50 | -8.615850e-47 |
| Msa0131600 | Msa0239800 | 0.806631 | 7.490898e-50 | -8.615850e-47 |
| Msa0131600 | Msa0244810 | 0.801031 | 1.090846e-48 | -8.615850e-47 |
| Msa0131600 | Msa0260680 | 0.822825 | 1.925836e-53 | -8.615850e-47 |
| Msa0131600 | Msa0264150 | 0.809074 | 2.264854e-50 | -8.615850e-47 |
| Msa0131600 | Msa0271530 | 0.805801 | 1.120231e-49 | -8.615850e-47 |
| Msa0131600 | Msa0273900 | 0.803433 | 3.494722e-49 | -8.615850e-47 |
| Msa0131600 | Msa0279220 | 0.813733 | 2.203764e-51 | -8.615850e-47 |
| Msa0131600 | Msa0280090 | 0.814632 | 1.395432e-51 | -8.615850e-47 |
| Msa0131600 | Msa0299870 | 0.808584 | 2.883323e-50 | -8.615850e-47 |
| Msa0131600 | Msa0309770 | 0.819665 | 1.030807e-52 | -8.615850e-47 |
| Msa0131600 | Msa0317510 | 0.817238 | 3.658303e-52 | -8.615850e-47 |
| Msa0131600 | Msa0318980 | 0.812408 | 4.304588e-51 | -8.615850e-47 |
| Msa0131600 | Msa0337620 | 0.804279 | 2.331199e-49 | -8.615850e-47 |
| Msa0131600 | Msa0385580 | 0.811228 | 7.776408e-51 | -8.615850e-47 |
| Msa0131600 | Msa0388700 | 0.804215 | 2.404471e-49 | -8.615850e-47 |
| Msa0131600 | Msa0395820 | 0.801000 | 1.106562e-48 | -8.615850e-47 |
| Msa0131600 | Msa0395970 | 0.802019 | 6.842898e-49 | -8.615850e-47 |
| Msa0131600 | Msa0402650 | 0.813210 | 2.872655e-51 | -8.615850e-47 |
| Msa0131600 | Msa0433640 | 0.808157 | 3.554675e-50 | -8.615850e-47 |
| Msa0131600 | Msa0439200 | 0.809750 | 1.621827e-50 | -8.615850e-47 |
| Msa0131600 | Msa0449210 | 0.800756 | 1.241611e-48 | -8.615850e-47 |
| Msa0131600 | Msa0479660 | 0.800122 | 1.671126e-48 | -8.615850e-47 |
| Msa0131600 | Msa0479970 | 0.802221 | 6.218169e-49 | -8.615850e-47 |
| Msa0131600 | Msa0481530 | 0.831523 | 1.590428e-55 | -8.615850e-47 |
| Msa0131600 | Msa0497490 | 0.811646 | 6.308272e-51 | -8.615850e-47 |
| Msa0131600 | Msa0521500 | 0.802596 | 5.203623e-49 | -8.615850e-47 |
| Msa0131600 | Msa0521540 | 0.805410 | 1.352801e-49 | -8.615850e-47 |
| Msa0131600 | Msa0529890 | 0.823662 | 1.227767e-53 | -8.615850e-47 |
| Msa0131600 | Msa0577500 | 0.808159 | 3.550840e-50 | -8.615850e-47 |
| Msa0131600 | Msa0585560 | 0.831012 | 2.124313e-55 | -8.615850e-47 |
| Msa0131600 | Msa0607050 | 0.834113 | 3.615737e-56 | -8.615850e-47 |
| Msa0131600 | Msa0610430 | 0.823869 | 1.098231e-53 | -8.615850e-47 |
| Msa0131600 | Msa0625720 | 0.820259 | 7.538489e-53 | -8.615850e-47 |
| Msa0131600 | Msa0647500 | 0.812978 | 3.230041e-51 | -8.615850e-47 |
| Msa0131600 | Msa0649490 | 0.802359 | 5.824681e-49 | -8.615850e-47 |
| Msa0131600 | Msa0657970 | 0.816415 | 5.595311e-52 | -8.615850e-47 |
| Msa0131600 | Msa0662500 | 0.808917 | 2.447044e-50 | -8.615850e-47 |
| Msa0131600 | Msa0663390 | 0.835262 | 1.859040e-56 | -8.615850e-47 |
| Msa0131600 | Msa0663810 | 0.821105 | 4.819655e-53 | -8.615850e-47 |
| Msa0131600 | Msa0673460 | 0.809462 | 1.869839e-50 | -8.615850e-47 |
| Msa0131600 | Msa0689260 | 0.819561 | 1.088650e-52 | -8.615850e-47 |
| Msa0131600 | Msa0690150 | 0.829018 | 6.510326e-55 | -8.615850e-47 |
| Msa0131600 | Msa0692830 | 0.826417 | 2.744869e-54 | -8.615850e-47 |
| Msa0131600 | Msa0692950 | 0.829187 | 5.923720e-55 | -8.615850e-47 |
| Msa0131600 | Msa0693380 | 0.807965 | 3.906622e-50 | -8.615850e-47 |
| Msa0131600 | Msa0708520 | 0.804231 | 2.385558e-49 | -8.615850e-47 |
| Msa0131600 | Msa0709400 | 0.803429 | 3.500205e-49 | -8.615850e-47 |
| Msa0131600 | Msa0709500 | 0.814535 | 1.466164e-51 | -8.615850e-47 |
| Msa0131600 | Msa0711780 | 0.826681 | 2.373340e-54 | -8.615850e-47 |
| Msa0131600 | Msa0715700 | 0.813204 | 2.881354e-51 | -8.615850e-47 |
| Msa0131600 | Msa0720820 | 0.803234 | 3.842850e-49 | -8.615850e-47 |
| Msa0131600 | Msa0743950 | 0.806265 | 8.947690e-50 | -8.615850e-47 |
| Msa0131600 | Msa0750880 | 0.807715 | 4.413654e-50 | -8.615850e-47 |
| Msa0131600 | Msa0762970 | 0.805293 | 1.431432e-49 | -8.615850e-47 |
| Msa0131600 | Msa0788850 | 0.803221 | 3.865382e-49 | -8.615850e-47 |
| Msa0131600 | Msa0790850 | 0.807642 | 4.575622e-50 | -8.615850e-47 |
| Msa0131600 | Msa0793800 | 0.824131 | 9.532917e-54 | -8.615850e-47 |
| Msa0131600 | Msa0793810 | 0.804871 | 1.753954e-49 | -8.615850e-47 |
| Msa0131600 | Msa0794670 | 0.824723 | 6.914376e-54 | -8.615850e-47 |
| Msa0131600 | Msa0803890 | 0.813674 | 2.271662e-51 | -8.615850e-47 |
| Msa0131600 | Msa0808080 | 0.818186 | 2.234883e-52 | -8.615850e-47 |
| Msa0131600 | Msa0841940 | 0.801355 | 9.361871e-49 | -8.615850e-47 |
| Msa0131600 | Msa0864250 | 0.805767 | 1.138537e-49 | -8.615850e-47 |
| Msa0131600 | Msa0867220 | 0.816417 | 5.588819e-52 | -8.615850e-47 |
| Msa0131600 | Msa0871270 | 0.805197 | 1.499436e-49 | -8.615850e-47 |
| Msa0131600 | Msa0880020 | 0.817716 | 2.854624e-52 | -8.615850e-47 |
| Msa0131600 | Msa0880140 | 0.808277 | 3.351686e-50 | -8.615850e-47 |
| Msa0131600 | Msa0902760 | 0.815700 | 8.083682e-52 | -8.615850e-47 |
| Msa0131600 | Msa0938220 | 0.812909 | 3.343150e-51 | -8.615850e-47 |
| Msa0131600 | Msa0968590 | 0.806567 | 7.724854e-50 | -8.615850e-47 |
| Msa0131600 | Msa0974070 | 0.804971 | 1.672238e-49 | -8.615850e-47 |
| Msa0131600 | Msa0993290 | 0.810944 | 8.957856e-51 | -8.615850e-47 |
| Msa0131600 | Msa0993600 | 0.810039 | 1.405354e-50 | -8.615850e-47 |
| Msa0131600 | Msa1003620 | 0.806039 | 9.980214e-50 | -8.615850e-47 |
| Msa0131600 | Msa1012320 | 0.807691 | 4.466260e-50 | -8.615850e-47 |
| Msa0131600 | Msa1013400 | 0.819719 | 1.002034e-52 | -8.615850e-47 |
| Msa0131600 | Msa1014540 | 0.819594 | 1.069798e-52 | -8.615850e-47 |
| Msa0131600 | Msa1051200 | 0.803198 | 3.907811e-49 | -8.615850e-47 |
| Msa0131600 | Msa1061680 | 0.822657 | 2.107216e-53 | -8.615850e-47 |
| Msa0131600 | Msa1075540 | 0.825485 | 4.569234e-54 | -8.615850e-47 |
| Msa0131600 | Msa1075650 | 0.800107 | 1.683099e-48 | -8.615850e-47 |
| Msa0131600 | Msa1079590 | 0.802244 | 6.150889e-49 | -8.615850e-47 |
| Msa0131600 | Msa1082500 | 0.809782 | 1.595971e-50 | -8.615850e-47 |
| Msa0131600 | Msa1093530 | 0.818477 | 1.920792e-52 | -8.615850e-47 |
| Msa0131600 | Msa1121440 | 0.805464 | 1.318388e-49 | -8.615850e-47 |
| Msa0131600 | Msa1124960 | 0.801599 | 8.343940e-49 | -8.615850e-47 |
| Msa0131600 | Msa1125760 | 0.807907 | 4.018559e-50 | -8.615850e-47 |
| Msa0131600 | Msa1154280 | 0.808660 | 2.776351e-50 | -8.615850e-47 |
| Msa0131600 | Msa1160590 | 0.816847 | 4.477991e-52 | -8.615850e-47 |
| Msa0131600 | Msa1167340 | 0.812913 | 3.336428e-51 | -8.615850e-47 |
| Msa0131600 | Msa1171360 | 0.813798 | 2.132881e-51 | -8.615850e-47 |
| Msa0131600 | Msa1208880 | 0.816329 | 5.848602e-52 | -8.615850e-47 |
| Msa0131600 | Msa1218600 | 0.812275 | 4.602293e-51 | -8.615850e-47 |
| Msa0131600 | Msa1245930 | 0.812032 | 5.200068e-51 | -8.615850e-47 |
| Msa0131600 | Msa1253020 | 0.803804 | 2.926797e-49 | -8.615850e-47 |
| Msa0131600 | Msa1259060 | 0.805779 | 1.131848e-49 | -8.615850e-47 |
| Msa0131600 | Msa1277660 | 0.809585 | 1.759950e-50 | -8.615850e-47 |
| Msa0131600 | Msa1306840 | 0.808267 | 3.369021e-50 | -8.615850e-47 |
| Msa0131600 | Msa1353060 | 0.807404 | 5.139444e-50 | -8.615850e-47 |
| Msa0131600 | Msa1353330 | 0.813817 | 2.112274e-51 | -8.615850e-47 |
| Msa0131600 | Msa1358250 | 0.820872 | 5.451481e-53 | -8.615850e-47 |
| Msa0131600 | Msa1386780 | 0.804157 | 2.471863e-49 | -8.615850e-47 |
| Msa0131600 | Msa1389800 | 0.805863 | 1.087254e-49 | -8.615850e-47 |
| Msa0131600 | Msa1392780 | 0.808184 | 3.509045e-50 | -8.615850e-47 |
| Msa0131600 | Msa1424750 | 0.809374 | 1.952982e-50 | -8.615850e-47 |
| Msa0131600 | Msa1451160 | 0.801439 | 9.001454e-49 | -8.615850e-47 |
| Msa0131600 | Msa1454480 | 0.835799 | 1.360043e-56 | -8.615850e-47 |
| Msa0131600 | Msa1457920 | 0.823563 | 1.294784e-53 | -8.615850e-47 |
| Msa0131600 | Msa1466540 | 0.805577 | 1.247985e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0131600 | MtrunA17_Chr1g0192461 | 99.057 | 212 | 2 | 0 | 1 | 212 | 1 | 212 | 7.47e-158 | 434 |
| Msa0131600 | MtrunA17_Chr4g0062401 | 37.838 | 111 | 56 | 2 | 70 | 174 | 96 | 199 | 2.94e-20 | 85.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0131600 | AT4G11060.1 | 65.094 | 212 | 63 | 1 | 1 | 212 | 1 | 201 | 7.14e-97 | 280 |
| Msa0131600 | AT3G18580.1 | 34.328 | 134 | 82 | 1 | 81 | 208 | 79 | 212 | 4.50e-25 | 98.2 |
Find 67 sgRNAs with CRISPR-Local
Find 353 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGAAATCTGCCCATTTAA+TGG | 0.180670 | 1_3:-62475379 | Msa0131600:three_prime_UTR |
| GTTTATAATGATAGTATTAA+TGG | 0.220262 | 1_3:-62479718 | Msa0131600:CDS |
| ACTCATGGACCTAACAATAT+TGG | 0.261279 | 1_3:+62481740 | None:intergenic |
| CTCCTGTACAGAAGATATTA+AGG | 0.303441 | 1_3:-62480017 | Msa0131600:CDS |
| CAGCCTTCACGTGATAATAA+TGG | 0.318951 | 1_3:-62481321 | Msa0131600:CDS |
| TTGTTGCAGTTCCTCGTTGC+TGG | 0.323440 | 1_3:-62481667 | Msa0131600:five_prime_UTR |
| CTCATGGACCTAACAATATT+GGG | 0.356820 | 1_3:+62481741 | None:intergenic |
| TTACGAAGCCCAATATTGTT+AGG | 0.357246 | 1_3:-62481749 | Msa0131600:five_prime_UTR |
| CGATGCCACTGAGCAGGTTT+AGG | 0.364625 | 1_3:+62479916 | None:intergenic |
| TAGCATAACACCGCGCTTCT+CGG | 0.377100 | 1_3:+62481375 | None:intergenic |
| CAGGGAAACTTCGCCTCATC+AGG | 0.382684 | 1_3:-62475635 | Msa0131600:CDS |
| ACCATCTTTACAGTTGGAAC+GGG | 0.406475 | 1_3:-62479979 | Msa0131600:CDS |
| TGCCGTGCATAATGAAGTAC+TGG | 0.409402 | 1_3:-62479890 | Msa0131600:CDS |
| CGAAATCCCCAACCTCTACT+TGG | 0.413564 | 1_3:+62481219 | None:intergenic |
| GCAATTATTTGTGGTAAAGT+TGG | 0.423042 | 1_3:-62480045 | Msa0131600:CDS |
| CTTGTATGGGAGAGGTGTAC+AGG | 0.434045 | 1_3:-62475257 | Msa0131600:three_prime_UTR |
| GATTAGTACGATCATATTTG+AGG | 0.436437 | 1_3:+62475198 | None:intergenic |
| TACAGAAGATATTAAGGAAT+GGG | 0.441398 | 1_3:-62480011 | Msa0131600:CDS |
| TGTTGATCCAAGTAGAGGTT+GGG | 0.441845 | 1_3:-62481226 | Msa0131600:CDS |
| AGCCTTCACGTGATAATAAT+GGG | 0.443255 | 1_3:-62481320 | Msa0131600:CDS |
| TCAAAACAGGCAATTATTTG+TGG | 0.443764 | 1_3:-62480054 | Msa0131600:intron |
| GAGCGTTGATAAAACTTCCT+TGG | 0.447768 | 1_3:-62475604 | Msa0131600:CDS |
| ATGTATGACCAGAGAATTGT+AGG | 0.461425 | 1_3:-62479952 | Msa0131600:CDS |
| CCTTTGATCCTACAATTCTC+TGG | 0.461876 | 1_3:+62479944 | None:intergenic |
| TCACGACGAACGCATATCTC+TGG | 0.465546 | 1_3:+62479679 | None:intergenic |
| TTCCTTAATATCTTCTGTAC+AGG | 0.466214 | 1_3:+62480015 | None:intergenic |
| GATGAGTTTGATGATTTCCT+TGG | 0.477482 | 1_3:-62481276 | Msa0131600:CDS |
| GAGATATGCGTTCGTCGTGA+TGG | 0.485219 | 1_3:-62479676 | Msa0131600:intron |
| AACTGCAACAACTTCTTGCA+AGG | 0.494380 | 1_3:+62481679 | None:intergenic |
| CCCCGTTCCAACTGTAAAGA+TGG | 0.496834 | 1_3:+62479978 | None:intergenic |
| AGAAGAGCTTCGAAGATGCT+TGG | 0.502926 | 1_3:+62481617 | None:intergenic |
| TTGATGATTTCCTTGGTGGA+AGG | 0.507897 | 1_3:-62481269 | Msa0131600:CDS |
| AACACCTTGTAGCTGTAACT+CGG | 0.509173 | 1_3:+62481245 | None:intergenic |
| ATCTTTACAGTTGGAACGGG+GGG | 0.528265 | 1_3:-62479976 | Msa0131600:CDS |
| GCAATGCGATGCCACTGAGC+AGG | 0.530428 | 1_3:+62479910 | None:intergenic |
| CGCTCTCTCCACTCCTGATG+AGG | 0.530931 | 1_3:+62475622 | None:intergenic |
| AGTTCTTCAGTATATGTTGA+GGG | 0.531436 | 1_3:-62479757 | Msa0131600:CDS |
| CCAGAGAATTGTAGGATCAA+AGG | 0.533594 | 1_3:-62479944 | Msa0131600:CDS |
| AGTAGAGGTTGGGGATTTCG+CGG | 0.536424 | 1_3:-62481216 | Msa0131600:CDS |
| AATGTGACCATCTTTACAGT+TGG | 0.540656 | 1_3:-62479985 | Msa0131600:CDS |
| GTGTTGATCCAAGTAGAGGT+TGG | 0.553639 | 1_3:-62481227 | Msa0131600:CDS |
| GAGTTTGATGATTTCCTTGG+TGG | 0.553736 | 1_3:-62481273 | Msa0131600:CDS |
| GACCATCTTTACAGTTGGAA+CGG | 0.555814 | 1_3:-62479980 | Msa0131600:CDS |
| GTTGATCCAAGTAGAGGTTG+GGG | 0.557542 | 1_3:-62481225 | Msa0131600:CDS |
| GGGATTTCGCGGTGTGCACA+AGG | 0.560350 | 1_3:-62481205 | Msa0131600:intron |
| GTACAGAAGATATTAAGGAA+TGG | 0.564034 | 1_3:-62480012 | Msa0131600:CDS |
| AGCCCATTATTATCACGTGA+AGG | 0.565033 | 1_3:+62481318 | None:intergenic |
| CAGTTCTTCAGTATATGTTG+AGG | 0.578487 | 1_3:-62479758 | Msa0131600:CDS |
| ACACCTTGTAGCTGTAACTC+GGG | 0.580151 | 1_3:+62481246 | None:intergenic |
| CCATCTTTACAGTTGGAACG+GGG | 0.580438 | 1_3:-62479978 | Msa0131600:CDS |
| ACTGCAACAACTTCTTGCAA+GGG | 0.583777 | 1_3:+62481680 | None:intergenic |
| TTTACGTCTGAAACTGATGC+TGG | 0.584180 | 1_3:-62481345 | Msa0131600:CDS |
| TCCCAGTACTTCATTATGCA+CGG | 0.590680 | 1_3:+62479888 | None:intergenic |
| GAACTTACTAAATTCATCCA+AGG | 0.592834 | 1_3:+62475587 | None:intergenic |
| GTGGGTTTAAGCAATACTCA+TGG | 0.599065 | 1_3:+62481725 | None:intergenic |
| TCTTTACAGTTGGAACGGGG+GGG | 0.613675 | 1_3:-62479975 | Msa0131600:CDS |
| CATCTTTACAGTTGGAACGG+GGG | 0.616404 | 1_3:-62479977 | Msa0131600:CDS |
| AAACTTCGCCTCATCAGGAG+TGG | 0.617457 | 1_3:-62475630 | Msa0131600:CDS |
| TGATAATAATGGGCTAAACA+AGG | 0.618206 | 1_3:-62481310 | Msa0131600:CDS |
| AGGCCCGAGTTACAGCTACA+AGG | 0.618480 | 1_3:-62481249 | Msa0131600:CDS |
| CAAGGTGTTGATCCAAGTAG+AGG | 0.630475 | 1_3:-62481231 | Msa0131600:CDS |
| CATCTTCGAAGCTCTTCTCA+CGG | 0.640689 | 1_3:-62481612 | Msa0131600:intron |
| AGCTTCTGTTCCGAGAAGCG+CGG | 0.677520 | 1_3:-62481385 | Msa0131600:CDS |
| GCCGTGCATAATGAAGTACT+GGG | 0.685850 | 1_3:-62479889 | Msa0131600:CDS |
| GTAACTCGGGCCTTCCACCA+AGG | 0.696325 | 1_3:+62481259 | None:intergenic |
| AGAATTCATTTCCAGCAACG+AGG | 0.711573 | 1_3:+62481656 | None:intergenic |
| ATTTGCCTAAACCTGCTCAG+TGG | 0.717014 | 1_3:-62479921 | Msa0131600:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATATATATA+TGG | - | chr1_3:62477504-62477523 | Msa0131600:intron | 0.0% |
| !! | ATATATATATATATATATAT+GGG | - | chr1_3:62477503-62477522 | Msa0131600:intron | 0.0% |
| !! | ATATATATATATATATATAT+GGG | + | chr1_3:62477503-62477522 | None:intergenic | 0.0% |
| !! | TATATATATATATATATATA+TGG | + | chr1_3:62477504-62477523 | None:intergenic | 0.0% |
| !! | TATATATATATATATATATA+TGG | - | chr1_3:62477504-62477523 | Msa0131600:intron | 0.0% |
| !! | ATATATATATATATATATAT+GGG | - | chr1_3:62477503-62477522 | Msa0131600:intron | 0.0% |
| !! | TATATATATATATATATATA+GGG | + | chr1_3:62477504-62477523 | None:intergenic | 0.0% |
| !! | ATATATATATATATATATAT+AGG | + | chr1_3:62477503-62477522 | None:intergenic | 0.0% |
| !! | ATATATATATATATATATAT+AGG | - | chr1_3:62477503-62477522 | Msa0131600:intron | 0.0% |
| !! | TATATATATATATATATATA+GGG | - | chr1_3:62477504-62477523 | Msa0131600:intron | 0.0% |
| !! | ATATATATATATATATATAT+GGG | + | chr1_3:62477503-62477522 | None:intergenic | 0.0% |
| !! | TATATATATATATATATATA+TGG | + | chr1_3:62477504-62477523 | None:intergenic | 0.0% |
| !! | ATATATATATATATATATAA+AGG | - | chr1_3:62479788-62479807 | Msa0131600:intron | 0.0% |
| !! | AAAAATAAATAATTTAAAAA+AGG | + | chr1_3:62480017-62480036 | None:intergenic | 0.0% |
| !! | TATATATATATATATATGAG+AGG | - | chr1_3:62478337-62478356 | Msa0131600:intron | 10.0% |
| !! | TTAATCAATATTGAAATTAA+AGG | + | chr1_3:62478412-62478431 | None:intergenic | 10.0% |
| !!! | TTAATTTCAATATTGATTAA+TGG | - | chr1_3:62478412-62478431 | Msa0131600:intron | 10.0% |
| !!! | TTTTTACAACATATTTTATT+TGG | - | chr1_3:62478909-62478928 | Msa0131600:intron | 10.0% |
| !! | ATATATATATATATATAGAG+GGG | + | chr1_3:62479401-62479420 | None:intergenic | 10.0% |
| !! | TAAAAATGCTATTAAAATTA+AGG | + | chr1_3:62480711-62480730 | None:intergenic | 10.0% |
| !!! | TAAGTAATTTTTTTTTTGTA+GGG | + | chr1_3:62480331-62480350 | None:intergenic | 10.0% |
| !!! | ATAAGTAATTTTTTTTTTGT+AGG | + | chr1_3:62480332-62480351 | None:intergenic | 10.0% |
| !!! | TTTACTCATTTTATTTAATT+TGG | - | chr1_3:62480933-62480952 | Msa0131600:intron | 10.0% |
| !!! | TTACTCATTTTATTTAATTT+GGG | - | chr1_3:62480934-62480953 | Msa0131600:intron | 10.0% |
| !! | TTAAAAGAATAACTTATGTT+TGG | - | chr1_3:62475871-62475890 | Msa0131600:intron | 15.0% |
| !!! | ATATTGGTCAAATTATTTTT+CGG | + | chr1_3:62476811-62476830 | None:intergenic | 15.0% |
| !! | GTTTATAATGATAGTATTAA+TGG | - | chr1_3:62477176-62477195 | Msa0131600:intron | 15.0% |
| !! | TGTTTATAATAGAAAAACAT+GGG | + | chr1_3:62477728-62477747 | None:intergenic | 15.0% |
| !! | TTGTTTATAATAGAAAAACA+TGG | + | chr1_3:62477729-62477748 | None:intergenic | 15.0% |
| !! | TGTTTATAATAGAAAAACAT+GGG | + | chr1_3:62477728-62477747 | None:intergenic | 15.0% |
| !! | TTGTTTATAATAGAAAAACA+TGG | + | chr1_3:62477729-62477748 | None:intergenic | 15.0% |
| !! | TTGTAAAAAAAACAAGTAAA+GGG | + | chr1_3:62478898-62478917 | None:intergenic | 15.0% |
| !! | GTTTACAAAAAATATAAGAA+AGG | + | chr1_3:62478956-62478975 | None:intergenic | 15.0% |
| !! | TGCATAGAAAATAAATAAAT+TGG | - | chr1_3:62479040-62479059 | Msa0131600:intron | 15.0% |
| !!! | TTAATTTCGATATTGATTAA+TGG | + | chr1_3:62479326-62479345 | None:intergenic | 15.0% |
| !! | TTAATCAATATCGAAATTAA+AGG | - | chr1_3:62479326-62479345 | Msa0131600:intron | 15.0% |
| !! | TATATATATATATATAGAGG+GGG | + | chr1_3:62479400-62479419 | None:intergenic | 15.0% |
| !! | GCATAAAATTCAATAATAAA+AGG | + | chr1_3:62480122-62480141 | None:intergenic | 15.0% |
| !! | ATAATAGTAAATCAATAATG+AGG | + | chr1_3:62480172-62480191 | None:intergenic | 15.0% |
| !!! | AAACAAAATTTATTTTAGCA+GGG | + | chr1_3:62480364-62480383 | None:intergenic | 15.0% |
| !!! | TAAACAAAATTTATTTTAGC+AGG | + | chr1_3:62480365-62480384 | None:intergenic | 15.0% |
| !! | AGATATAAGTAACAAAAATA+TGG | - | chr1_3:62480524-62480543 | Msa0131600:intron | 15.0% |
| !!! | AATTTTTGCGATATTTTTTT+CGG | - | chr1_3:62480559-62480578 | Msa0131600:intron | 15.0% |
| !! | AAGCATAAATTAAACAAATT+TGG | - | chr1_3:62480643-62480662 | Msa0131600:intron | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+AGG | - | chr1_3:62480715-62480734 | Msa0131600:intron | 15.0% |
| !!! | TACTCATTTTATTTAATTTG+GGG | - | chr1_3:62480935-62480954 | Msa0131600:intron | 15.0% |
| !! | ATCAGTTTATCTTATATTTA+TGG | - | chr1_3:62481148-62481167 | Msa0131600:intron | 15.0% |
| !! | AAGTTAGAAGTTAAATAAGA+AGG | + | chr1_3:62476191-62476210 | None:intergenic | 20.0% |
| !! | AAATGTTGTTATAAACACAT+TGG | + | chr1_3:62476222-62476241 | None:intergenic | 20.0% |
| !! | ATATATCTCAACATAAAACA+AGG | + | chr1_3:62476323-62476342 | None:intergenic | 20.0% |
| !! | ATATATCTCAACATAAAACA+AGG | + | chr1_3:62476323-62476342 | None:intergenic | 20.0% |
| !!! | TATTGGTCAAATTATTTTTC+GGG | + | chr1_3:62476810-62476829 | None:intergenic | 20.0% |
| !! | GAAAAATAATTTGACCAATA+TGG | - | chr1_3:62476810-62476829 | Msa0131600:intron | 20.0% |
| !!! | CTTACTTTTTAAAAAGTTGT+TGG | + | chr1_3:62477043-62477062 | None:intergenic | 20.0% |
| !! | AAAACCCTATATGTATATAT+AGG | - | chr1_3:62477624-62477643 | Msa0131600:intron | 20.0% |
| !! | AAACCCTATATGTATATATA+GGG | - | chr1_3:62477625-62477644 | Msa0131600:intron | 20.0% |
| !! | AAAGTTTAATAGAGACAAAA+TGG | - | chr1_3:62477792-62477811 | Msa0131600:intron | 20.0% |
| !! | TAAAGTTTAATAGAGACAAA+AGG | - | chr1_3:62477791-62477810 | Msa0131600:intron | 20.0% |
| !! | AAAGTTTAATAGAGACAAAA+GGG | - | chr1_3:62477792-62477811 | Msa0131600:intron | 20.0% |
| !! | ATGGTTTAGATTAATTGATT+TGG | - | chr1_3:62478431-62478450 | Msa0131600:intron | 20.0% |
| !!! | TTTAGATTAATTGATTTGGT+AGG | - | chr1_3:62478435-62478454 | Msa0131600:intron | 20.0% |
| !! | ACACTAAAAGAAATTGAAAA+AGG | - | chr1_3:62478565-62478584 | Msa0131600:intron | 20.0% |
| !! | CACTAAAAGAAATTGAAAAA+GGG | - | chr1_3:62478566-62478585 | Msa0131600:intron | 20.0% |
| !!! | GAATGAGTGTTTATTTTAAA+AGG | + | chr1_3:62478648-62478667 | None:intergenic | 20.0% |
| !! | GCGTTAAAAAAAAAAGTAAA+GGG | + | chr1_3:62478724-62478743 | None:intergenic | 20.0% |
| !! | AGCGTTAAAAAAAAAAGTAA+AGG | + | chr1_3:62478725-62478744 | None:intergenic | 20.0% |
| !! | GTGTAACAAAAAAAACTAAA+GGG | + | chr1_3:62478803-62478822 | None:intergenic | 20.0% |
| !! | AGTGTAACAAAAAAAACTAA+AGG | + | chr1_3:62478804-62478823 | None:intergenic | 20.0% |
| !! | GTTGTAAAAAAAACAAGTAA+AGG | + | chr1_3:62478899-62478918 | None:intergenic | 20.0% |
| !!! | AGTTTTTTTTGTTTGTTTGA+GGG | - | chr1_3:62479114-62479133 | Msa0131600:intron | 20.0% |
| !! | ATATATATATATATAGAGGG+GGG | + | chr1_3:62479399-62479418 | None:intergenic | 20.0% |
| !! | TATATATATAAAGGAACAGA+CGG | - | chr1_3:62479797-62479816 | Msa0131600:intron | 20.0% |
| !!! | ATCATATTAACATTGATGAT+GGG | + | chr1_3:62479891-62479910 | None:intergenic | 20.0% |
| !! | AATCATATTAACATTGATGA+TGG | + | chr1_3:62479892-62479911 | None:intergenic | 20.0% |
| !! | AATGCTATTAAAATTAAGGA+AGG | + | chr1_3:62480302-62480321 | None:intergenic | 20.0% |
| !!! | GTTTTTCAAGAATTTTTTAC+AGG | + | chr1_3:62480613-62480632 | None:intergenic | 20.0% |
| !!! | AATAGGGTTAATTATGTTTT+TGG | + | chr1_3:62480773-62480792 | None:intergenic | 20.0% |
| !! | TAAAATGAGTAAAATAAGCT+CGG | + | chr1_3:62480926-62480945 | None:intergenic | 20.0% |
| !!! | ATGAGTATTGGAATTAATTA+AGG | - | chr1_3:62481097-62481116 | Msa0131600:intron | 20.0% |
| !! | GATATGTTATCTATTTAAGT+GGG | + | chr1_3:62481131-62481150 | None:intergenic | 20.0% |
| !! | TGATATGTTATCTATTTAAG+TGG | + | chr1_3:62481132-62481151 | None:intergenic | 20.0% |
| !!! | TTTTTATGCTTCCATTAAAT+GGG | + | chr1_3:62481529-62481548 | None:intergenic | 20.0% |
| !!! | ATTTTTATGCTTCCATTAAA+TGG | + | chr1_3:62481530-62481549 | None:intergenic | 20.0% |
| !! | GCATAAAAATCTGTAATAAT+TGG | - | chr1_3:62481540-62481559 | Msa0131600:intron | 20.0% |
| !! | TAAAAATCTGTAATAATTGG+AGG | - | chr1_3:62481543-62481562 | Msa0131600:intron | 20.0% |
| !!! | CTTTCTTAATTTTCTTGTAT+GGG | - | chr1_3:62481624-62481643 | Msa0131600:CDS | 20.0% |
| !!! | TTTTTCATTTCTAGTTTCAC+TGG | - | chr1_3:62475367-62475386 | Msa0131600:three_prime_UTR | 25.0% |
| !!! | TAAGTTATTTCTGTCTCAAA+AGG | - | chr1_3:62475952-62475971 | Msa0131600:intron | 25.0% |
| ! | TCAAAAAAGTTAATCCAAAC+AGG | - | chr1_3:62476122-62476141 | Msa0131600:intron | 25.0% |
| ! | ATAGAAGCTAATTTCAACTT+GGG | + | chr1_3:62476148-62476167 | None:intergenic | 25.0% |
| ! | AATAGAAGCTAATTTCAACT+TGG | + | chr1_3:62476149-62476168 | None:intergenic | 25.0% |
| ! | TGAATTAGTAGAATCAATTC+TGG | - | chr1_3:62476684-62476703 | Msa0131600:intron | 25.0% |
| ! | ACAAACTATCTTCTATTCTA+AGG | + | chr1_3:62476766-62476785 | None:intergenic | 25.0% |
| ! | TACAGAAGATATTAAGGAAT+GGG | - | chr1_3:62476883-62476902 | Msa0131600:intron | 25.0% |
| ! | AAAGTAAGTGTTTATACTAG+AGG | - | chr1_3:62477055-62477074 | Msa0131600:intron | 25.0% |
| !!! | TAACCTAATAAAAGGCATTA+CGG | + | chr1_3:62477367-62477386 | None:intergenic | 25.0% |
| ! | AACCCTATATGTATATATAG+GGG | - | chr1_3:62477626-62477645 | Msa0131600:intron | 25.0% |
| !!! | TGTTTTGGTAAATAACTAGT+AGG | + | chr1_3:62477705-62477724 | None:intergenic | 25.0% |
| !!! | TGTTTTAGTAAAGTACAAGT+AGG | - | chr1_3:62477815-62477834 | Msa0131600:intron | 25.0% |
| !!! | TGTTTTGGTAAATAACTAGT+AGG | + | chr1_3:62477705-62477724 | None:intergenic | 25.0% |
| !!! | TGTTTTAGTAAAGTACAAGT+AGG | - | chr1_3:62477815-62477834 | Msa0131600:intron | 25.0% |
| !! | ATAGAAGACATCTTTTATGA+AGG | - | chr1_3:62478150-62478169 | Msa0131600:intron | 25.0% |
| ! | AAAGTGAAAATCACACATTA+AGG | - | chr1_3:62478260-62478279 | Msa0131600:intron | 25.0% |
| ! | TGAAATTAAAGGTCATGATT+TGG | + | chr1_3:62478401-62478420 | None:intergenic | 25.0% |
| !!! | TTAATTGCTTTGTTGTTTTG+TGG | + | chr1_3:62478498-62478517 | None:intergenic | 25.0% |
| !!! | CTTAGATTAATTGATTTGGT+AGG | + | chr1_3:62479303-62479322 | None:intergenic | 25.0% |
| ! | ATGGCTTAGATTAATTGATT+TGG | + | chr1_3:62479307-62479326 | None:intergenic | 25.0% |
| ! | AAGTAGTTAAATACACCTTA+AGG | + | chr1_3:62479514-62479533 | None:intergenic | 25.0% |
| !! | ACACCTTCTAAAAAATAAGT+GGG | + | chr1_3:62479621-62479640 | None:intergenic | 25.0% |
| ! | AAGTTGTTAAATACACCTTA+AGG | + | chr1_3:62479660-62479679 | None:intergenic | 25.0% |
| ! | ACACCTTAATAAAAACTAGT+GGG | - | chr1_3:62479703-62479722 | Msa0131600:CDS | 25.0% |
| !!! | ATTTAATCAAAGCCCTTTTT+TGG | - | chr1_3:62480038-62480057 | Msa0131600:CDS | 25.0% |
| !!! | TAATGGGTTAATTATGTTGT+TGG | - | chr1_3:62480244-62480263 | Msa0131600:intron | 25.0% |
| ! | GTGTTAAGAACGTTATTAAA+AGG | + | chr1_3:62480589-62480608 | None:intergenic | 25.0% |
| ! | AAACAAATTTGGATTGAGTA+AGG | - | chr1_3:62480654-62480673 | Msa0131600:intron | 25.0% |
| ! | TTACAAAACCTCAATTTAGT+AGG | - | chr1_3:62480745-62480764 | Msa0131600:intron | 25.0% |
| ! | TACAAAACCTCAATTTAGTA+GGG | - | chr1_3:62480746-62480765 | Msa0131600:intron | 25.0% |
| ! | TTCAACTATTATTTGAACTG+TGG | + | chr1_3:62480815-62480834 | None:intergenic | 25.0% |
| !! | TGATTTTATCTTTGTGAAGA+GGG | - | chr1_3:62481045-62481064 | Msa0131600:intron | 25.0% |
| !! | GTTACAATTTTCATGAGTAT+TGG | - | chr1_3:62481085-62481104 | Msa0131600:intron | 25.0% |
| !! | GCTTTCTTAATTTTCTTGTA+TGG | - | chr1_3:62481623-62481642 | Msa0131600:CDS | 25.0% |
| ! | CAAGGGTTTAACTTCAAAAA+CGG | + | chr1_3:62475200-62475219 | None:intergenic | 30.0% |
| ! | CATTTTGTCAAACACTTGTT+AGG | - | chr1_3:62475392-62475411 | Msa0131600:exon | 30.0% |
| !! | TGATAATAATGGGCTAAACA+AGG | - | chr1_3:62475584-62475603 | Msa0131600:intron | 30.0% |
| !! | GCTGTTTTCATAAGTTATCT+TGG | - | chr1_3:62476011-62476030 | Msa0131600:intron | 30.0% |
| AAGTTATCTTGGAGAGTTTA+TGG | - | chr1_3:62476022-62476041 | Msa0131600:intron | 30.0% | |
| ! | ACAAGGTTCAGTTTGAAATT+TGG | + | chr1_3:62476306-62476325 | None:intergenic | 30.0% |
| !!! | GGTTTTTATTTTTCAGTGCA+AGG | - | chr1_3:62476400-62476419 | Msa0131600:intron | 30.0% |
| ! | ATTCAAACTCGTAAAAGTAC+TGG | + | chr1_3:62476457-62476476 | None:intergenic | 30.0% |
| ! | ACAAGGTTCAGTTTGAAATT+TGG | + | chr1_3:62476306-62476325 | None:intergenic | 30.0% |
| !!! | GGTTTTTATTTTTCAGTGCA+AGG | - | chr1_3:62476400-62476419 | Msa0131600:intron | 30.0% |
| ! | ATTCAAACTCGTAAAAGTAC+TGG | + | chr1_3:62476457-62476476 | None:intergenic | 30.0% |
| !! | GTTTTGAATCACTACCATAT+TGG | + | chr1_3:62476827-62476846 | None:intergenic | 30.0% |
| ! | ATATGGTAGTGATTCAAAAC+AGG | - | chr1_3:62476827-62476846 | Msa0131600:intron | 30.0% |
| TCAAAACAGGCAATTATTTG+TGG | - | chr1_3:62476840-62476859 | Msa0131600:intron | 30.0% | |
| GCAATTATTTGTGGTAAAGT+TGG | - | chr1_3:62476849-62476868 | Msa0131600:intron | 30.0% | |
| TTCCTTAATATCTTCTGTAC+AGG | + | chr1_3:62476882-62476901 | None:intergenic | 30.0% | |
| GTACAGAAGATATTAAGGAA+TGG | - | chr1_3:62476882-62476901 | Msa0131600:intron | 30.0% | |
| AGTTCTTCAGTATATGTTGA+GGG | - | chr1_3:62477137-62477156 | Msa0131600:intron | 30.0% | |
| ! | TATCCGTAATGCCTTTTATT+AGG | - | chr1_3:62477361-62477380 | Msa0131600:intron | 30.0% |
| GATGCTTCTAACCTAATAAA+AGG | + | chr1_3:62477375-62477394 | None:intergenic | 30.0% | |
| AAAACCCAGACAAAAAAATG+AGG | + | chr1_3:62477403-62477422 | None:intergenic | 30.0% | |
| !!! | TCATTTTTTTGTCTGGGTTT+TGG | - | chr1_3:62477402-62477421 | Msa0131600:intron | 30.0% |
| !!! | CATTTTTTTGTCTGGGTTTT+GGG | - | chr1_3:62477403-62477422 | Msa0131600:intron | 30.0% |
| ! | ATAGAAGACACCTTTTATGA+AGG | - | chr1_3:62477541-62477560 | Msa0131600:intron | 30.0% |
| ! | GTGATTTTCACCTTCATAAA+AGG | + | chr1_3:62477554-62477573 | None:intergenic | 30.0% |
| ! | TTTTAACAAGTCACACCTTA+AGG | + | chr1_3:62477578-62477597 | None:intergenic | 30.0% |
| ACCCTATATGTATATATAGG+GGG | - | chr1_3:62477627-62477646 | Msa0131600:intron | 30.0% | |
| ! | ATAGAAAAACATGGGTGTTT+TGG | + | chr1_3:62477720-62477739 | None:intergenic | 30.0% |
| ! | ATAGAAAAACATGGGTGTTT+TGG | + | chr1_3:62477720-62477739 | None:intergenic | 30.0% |
| !! | AAAGACACCAACTTACTTTT+AGG | - | chr1_3:62478208-62478227 | Msa0131600:intron | 30.0% |
| TAAGTTAACACACTTACTCT+TGG | + | chr1_3:62479362-62479381 | None:intergenic | 30.0% | |
| GAAGAATGAAAACAAAATCG+TGG | + | chr1_3:62478779-62478798 | None:intergenic | 30.0% | |
| CGCTACAAGAAATTGAATAA+AGG | + | chr1_3:62479164-62479183 | None:intergenic | 30.0% | |
| ! | GCTTTAATTTCATGCTCTAT+TGG | + | chr1_3:62479281-62479300 | None:intergenic | 30.0% |
| CGAAATTAAAGGTCATGATT+TGG | - | chr1_3:62479337-62479356 | Msa0131600:intron | 30.0% | |
| TAAGTTAACACACTTACTCT+TGG | - | chr1_3:62479362-62479381 | Msa0131600:intron | 30.0% | |
| ! | CACACCTTCTAAAAAATAAG+CGG | - | chr1_3:62479555-62479574 | Msa0131600:intron | 30.0% |
| ! | ACACCTTCTAAAAAATAAGC+GGG | - | chr1_3:62479556-62479575 | Msa0131600:intron | 30.0% |
| !!! | ACACCCACTTATTTTTTAGA+AGG | - | chr1_3:62479615-62479634 | Msa0131600:intron | 30.0% |
| ! | CACACCTTCTAAAAAATAAG+TGG | + | chr1_3:62479555-62479574 | None:intergenic | 30.0% |
| ! | TTTTAGCAACATTCACCTTA+AGG | - | chr1_3:62479642-62479661 | Msa0131600:intron | 30.0% |
| CACACCTTAATAAAAACTAG+TGG | - | chr1_3:62479702-62479721 | Msa0131600:CDS | 30.0% | |
| !!! | ACACCCACTAGTTTTTATTA+AGG | + | chr1_3:62479709-62479728 | None:intergenic | 30.0% |
| ! | ATATATATATGGGGTTTGCT+AGG | + | chr1_3:62479734-62479753 | None:intergenic | 30.0% |
| CTTCATATGTCTCCAAAAAA+GGG | + | chr1_3:62480053-62480072 | None:intergenic | 30.0% | |
| ! | CATATGAAGGTATGCATTTA+AGG | - | chr1_3:62480064-62480083 | Msa0131600:intron | 30.0% |
| CTAAGTAAACCATCTATATG+CGG | + | chr1_3:62480099-62480118 | None:intergenic | 30.0% | |
| ! | CAAGTTTAGAACACTATGAA+AGG | - | chr1_3:62480427-62480446 | Msa0131600:intron | 30.0% |
| !!! | TTTTGCGATATTTTTTTCGG+AGG | - | chr1_3:62480562-62480581 | Msa0131600:intron | 30.0% |
| !!! | TGAGTGCAGAAATTTTTTGT+AGG | - | chr1_3:62480685-62480704 | Msa0131600:intron | 30.0% |
| !!! | GAGTGCAGAAATTTTTTGTA+GGG | - | chr1_3:62480686-62480705 | Msa0131600:intron | 30.0% |
| !!! | ACGTTGCTTATTTTTATCTC+TGG | - | chr1_3:62480877-62480896 | Msa0131600:intron | 30.0% |
| !!! | CGTTGCTTATTTTTATCTCT+GGG | - | chr1_3:62480878-62480897 | Msa0131600:intron | 30.0% |
| TGTGCAAAGAATACATGTTT+GGG | + | chr1_3:62481018-62481037 | None:intergenic | 30.0% | |
| ! | CTGATTTTATCTTTGTGAAG+AGG | - | chr1_3:62481044-62481063 | Msa0131600:intron | 30.0% |
| GAACTTACTAAATTCATCCA+AGG | + | chr1_3:62481310-62481329 | None:intergenic | 30.0% | |
| ACATAGTAAAGTGACTGAAA+AGG | + | chr1_3:62481373-62481392 | None:intergenic | 30.0% | |
| CCAATAGAACTCCAAAAATA+CGG | + | chr1_3:62481405-62481424 | None:intergenic | 30.0% | |
| !!! | CGTATTTTTGGAGTTCTATT+GGG | - | chr1_3:62481403-62481422 | Msa0131600:intron | 30.0% |
| ACTGACTAATAAATTCATGC+TGG | - | chr1_3:62481473-62481492 | Msa0131600:intron | 30.0% | |
| ! | TTAATTTTCTTGTATGGGAG+AGG | - | chr1_3:62481629-62481648 | Msa0131600:CDS | 30.0% |
| GATTAGTACGATCATATTTG+AGG | + | chr1_3:62481699-62481718 | None:intergenic | 30.0% | |
| TTACGAAGCCCAATATTGTT+AGG | - | chr1_3:62475145-62475164 | Msa0131600:three_prime_UTR | 35.0% | |
| CTCATGGACCTAACAATATT+GGG | + | chr1_3:62475156-62475175 | None:intergenic | 35.0% | |
| ACTCATGGACCTAACAATAT+TGG | + | chr1_3:62475157-62475176 | None:intergenic | 35.0% | |
| ACTTCAAAAACGGTAAGTGT+GGG | + | chr1_3:62475190-62475209 | None:intergenic | 35.0% | |
| AACTTCAAAAACGGTAAGTG+TGG | + | chr1_3:62475191-62475210 | None:intergenic | 35.0% | |
| AGCCTTCACGTGATAATAAT+GGG | - | chr1_3:62475574-62475593 | Msa0131600:intron | 35.0% | |
| ! | GATGAGTTTGATGATTTCCT+TGG | - | chr1_3:62475618-62475637 | Msa0131600:CDS | 35.0% |
| AGATGTCAATGAACAACACA+CGG | + | chr1_3:62475717-62475736 | None:intergenic | 35.0% | |
| GTTCATTGACATCTCTATGA+CGG | - | chr1_3:62475723-62475742 | Msa0131600:intron | 35.0% | |
| ! | TGCTTCTAAGTTCACTGATT+AGG | + | chr1_3:62475784-62475803 | None:intergenic | 35.0% |
| TGGAGACAGCTTATGAATTT+CGG | + | chr1_3:62476055-62476074 | None:intergenic | 35.0% | |
| AGATTGTTTGAGAGAGCTTA+TGG | + | chr1_3:62476075-62476094 | None:intergenic | 35.0% | |
| CTCCTGTACAGAAGATATTA+AGG | - | chr1_3:62476877-62476896 | Msa0131600:intron | 35.0% | |
| AATGTGACCATCTTTACAGT+TGG | - | chr1_3:62476909-62476928 | Msa0131600:intron | 35.0% | |
| ATGTATGACCAGAGAATTGT+AGG | - | chr1_3:62476942-62476961 | Msa0131600:intron | 35.0% | |
| CATTAAAGTTTCAAGCGTCA+GGG | + | chr1_3:62477116-62477135 | None:intergenic | 35.0% | |
| CAGTTCTTCAGTATATGTTG+AGG | - | chr1_3:62477136-62477155 | Msa0131600:intron | 35.0% | |
| ACAGTAGAGCTTAATGTTGT+TGG | + | chr1_3:62477304-62477323 | None:intergenic | 35.0% | |
| !!! | AAGCTCCTCATTTTTTTGTC+TGG | - | chr1_3:62477395-62477414 | Msa0131600:intron | 35.0% |
| !!! | AGCTCCTCATTTTTTTGTCT+GGG | - | chr1_3:62477396-62477415 | Msa0131600:intron | 35.0% |
| ! | ACATTGTAGTGGAGAAACAT+AGG | - | chr1_3:62477435-62477454 | Msa0131600:intron | 35.0% |
| ! | CATTGTAGTGGAGAAACATA+GGG | - | chr1_3:62477436-62477455 | Msa0131600:intron | 35.0% |
| AAGGTGAAAATCACACCTTA+AGG | - | chr1_3:62477560-62477579 | Msa0131600:intron | 35.0% | |
| TTGTTAAAAGACACCACCAA+AGG | - | chr1_3:62477589-62477608 | Msa0131600:intron | 35.0% | |
| TGTTAAAAGACACCACCAAA+GGG | - | chr1_3:62477590-62477609 | Msa0131600:intron | 35.0% | |
| GCCCCCTATATATACATATA+GGG | + | chr1_3:62477631-62477650 | None:intergenic | 35.0% | |
| AGCCCCCTATATATACATAT+AGG | + | chr1_3:62477632-62477651 | None:intergenic | 35.0% | |
| ! | ACTTGCACCTTAGTGTTTTT+AGG | + | chr1_3:62478005-62478024 | None:intergenic | 35.0% |
| ! | ACTTGCACCTTAGTGTTTTT+AGG | - | chr1_3:62478005-62478024 | Msa0131600:intron | 35.0% |
| !! | ACACCAACTTACTTTTAGGA+AGG | - | chr1_3:62478212-62478231 | Msa0131600:intron | 35.0% |
| ACACCTTCCTAAAAGTAAGT+TGG | + | chr1_3:62478218-62478237 | None:intergenic | 35.0% | |
| GTGATGACTTCAATAGAACA+TGG | + | chr1_3:62478469-62478488 | None:intergenic | 35.0% | |
| TCACGAAAAAAACACGATAG+AGG | - | chr1_3:62478997-62479016 | Msa0131600:intron | 35.0% | |
| ! | ACACCCACTAGTTTATATGT+GGG | - | chr1_3:62479469-62479488 | Msa0131600:intron | 35.0% |
| ACTCCCACATATAAACTAGT+GGG | + | chr1_3:62479475-62479494 | None:intergenic | 35.0% | |
| ! | TTTTAGCAAGCTACACCTTA+AGG | - | chr1_3:62479496-62479515 | Msa0131600:intron | 35.0% |
| !!! | ACACCCGCTTATTTTTTAGA+AGG | + | chr1_3:62479562-62479581 | None:intergenic | 35.0% |
| TGTATGTTAGCAACTCCTAT+AGG | + | chr1_3:62479598-62479617 | None:intergenic | 35.0% | |
| GATTGGGAAACTTATCAAAC+TGG | - | chr1_3:62479971-62479990 | Msa0131600:CDS | 35.0% | |
| CCTTCATATGTCTCCAAAAA+AGG | + | chr1_3:62480054-62480073 | None:intergenic | 35.0% | |
| !!! | CCTTTTTTGGAGACATATGA+AGG | - | chr1_3:62480051-62480070 | Msa0131600:intron | 35.0% |
| GATCATAATTTATGTCCTGC+AGG | + | chr1_3:62480150-62480169 | None:intergenic | 35.0% | |
| ! | TACAAGGTCGCAATTTTGTA+GGG | + | chr1_3:62480271-62480290 | None:intergenic | 35.0% |
| ! | TTACAAGGTCGCAATTTTGT+AGG | + | chr1_3:62480272-62480291 | None:intergenic | 35.0% |
| AAGGAAGGACTAAACTTACA+AGG | + | chr1_3:62480287-62480306 | None:intergenic | 35.0% | |
| ! | TTTTGGTCCCTACTAAATTG+AGG | + | chr1_3:62480756-62480775 | None:intergenic | 35.0% |
| CTGTGCAAAGAATACATGTT+TGG | + | chr1_3:62481019-62481038 | None:intergenic | 35.0% | |
| CATGTATTCTTTGCACAGAA+AGG | - | chr1_3:62481021-62481040 | Msa0131600:intron | 35.0% | |
| TTCTCCATGTTATCTCTTCA+GGG | - | chr1_3:62481241-62481260 | Msa0131600:CDS | 35.0% | |
| !!! | CCGTATTTTTGGAGTTCTAT+TGG | - | chr1_3:62481402-62481421 | Msa0131600:intron | 35.0% |
| ACTAATAAATTCATGCTGGC+AGG | - | chr1_3:62481477-62481496 | Msa0131600:intron | 35.0% | |
| GAAGAAATCTGCCCATTTAA+TGG | - | chr1_3:62481515-62481534 | Msa0131600:intron | 35.0% | |
| GTGGGTTTAAGCAATACTCA+TGG | + | chr1_3:62475172-62475191 | None:intergenic | 40.0% | |
| ACTGCAACAACTTCTTGCAA+GGG | + | chr1_3:62475217-62475236 | None:intergenic | 40.0% | |
| AACTGCAACAACTTCTTGCA+AGG | + | chr1_3:62475218-62475237 | None:intergenic | 40.0% | |
| AGAATTCATTTCCAGCAACG+AGG | + | chr1_3:62475241-62475260 | None:intergenic | 40.0% | |
| ! | TTTACGTCTGAAACTGATGC+TGG | - | chr1_3:62475549-62475568 | Msa0131600:intron | 40.0% |
| CAGCCTTCACGTGATAATAA+TGG | - | chr1_3:62475573-62475592 | Msa0131600:intron | 40.0% | |
| AGCCCATTATTATCACGTGA+AGG | + | chr1_3:62475579-62475598 | None:intergenic | 40.0% | |
| ! | GAGTTTGATGATTTCCTTGG+TGG | - | chr1_3:62475621-62475640 | Msa0131600:CDS | 40.0% |
| ! | TTGATGATTTCCTTGGTGGA+AGG | - | chr1_3:62475625-62475644 | Msa0131600:CDS | 40.0% |
| AACACCTTGTAGCTGTAACT+CGG | + | chr1_3:62475652-62475671 | None:intergenic | 40.0% | |
| TGTTGATCCAAGTAGAGGTT+GGG | - | chr1_3:62475668-62475687 | Msa0131600:intron | 40.0% | |
| ! | TTGACATCTCTATGACGGAA+TGG | - | chr1_3:62475728-62475747 | Msa0131600:intron | 40.0% |
| GCTCTCTCAAACAATCTTAC+AGG | - | chr1_3:62476078-62476097 | Msa0131600:intron | 40.0% | |
| AATTTCAACTTGGGCCTGTT+TGG | + | chr1_3:62476139-62476158 | None:intergenic | 40.0% | |
| TGTCTGCTATGATCGTATAG+AGG | - | chr1_3:62476379-62476398 | Msa0131600:intron | 40.0% | |
| !! | ACTCGTAAAAGTACTGGTTC+TGG | + | chr1_3:62476451-62476470 | None:intergenic | 40.0% |
| TGTCTGCTATGATCGTATAG+AGG | - | chr1_3:62476379-62476398 | Msa0131600:intron | 40.0% | |
| !! | ACTCGTAAAAGTACTGGTTC+TGG | + | chr1_3:62476451-62476470 | None:intergenic | 40.0% |
| GACCATCTTTACAGTTGGAA+CGG | - | chr1_3:62476914-62476933 | Msa0131600:intron | 40.0% | |
| ACCATCTTTACAGTTGGAAC+GGG | - | chr1_3:62476915-62476934 | Msa0131600:intron | 40.0% | |
| CCTTTGATCCTACAATTCTC+TGG | + | chr1_3:62476953-62476972 | None:intergenic | 40.0% | |
| CCAGAGAATTGTAGGATCAA+AGG | - | chr1_3:62476950-62476969 | Msa0131600:intron | 40.0% | |
| TCCCAGTACTTCATTATGCA+CGG | + | chr1_3:62477009-62477028 | None:intergenic | 40.0% | |
| GCATTAAAGTTTCAAGCGTC+AGG | + | chr1_3:62477117-62477136 | None:intergenic | 40.0% | |
| CAACATTAAGCTCTACTGTG+TGG | - | chr1_3:62477305-62477324 | Msa0131600:intron | 40.0% | |
| !! | TAGCTTGTTTCTGCATTCAG+AGG | - | chr1_3:62477464-62477483 | Msa0131600:intron | 40.0% |
| !! | AGCTTGTTTCTGCATTCAGA+GGG | - | chr1_3:62477465-62477484 | Msa0131600:intron | 40.0% |
| ! | TTTTGTTACAAGCCACCCTT+TGG | + | chr1_3:62477608-62477627 | None:intergenic | 40.0% |
| !!! | GCACCTTAGTGTTTTTAGGT+GGG | + | chr1_3:62478009-62478028 | None:intergenic | 40.0% |
| !!! | TGCACCTTAGTGTTTTTAGG+TGG | + | chr1_3:62478008-62478027 | None:intergenic | 40.0% |
| !!! | TGCACCTTAGTGTTTTTAGG+TGG | - | chr1_3:62478008-62478027 | Msa0131600:intron | 40.0% |
| !!! | GCACCTTAGTGTTTTTAGGT+GGG | - | chr1_3:62478009-62478028 | Msa0131600:intron | 40.0% |
| TTGATGAAAGACACCACCAA+AGG | - | chr1_3:62478289-62478308 | Msa0131600:intron | 40.0% | |
| TGATGAAAGACACCACCAAA+GGG | - | chr1_3:62478290-62478309 | Msa0131600:intron | 40.0% | |
| TTATGTTACAAGCCACCCTT+TGG | + | chr1_3:62478308-62478327 | None:intergenic | 40.0% | |
| ! | CACACCCACTAGTTTATATG+TGG | - | chr1_3:62479468-62479487 | Msa0131600:intron | 40.0% |
| CACTCCCACATATAAACTAG+TGG | + | chr1_3:62479476-62479495 | None:intergenic | 40.0% | |
| GTATCCTAGCAAATGCCTAT+AGG | - | chr1_3:62479580-62479599 | Msa0131600:intron | 40.0% | |
| AACTCCTATAGGCATTTGCT+AGG | + | chr1_3:62479587-62479606 | None:intergenic | 40.0% | |
| CACTTAACCTGACCATGATT+TGG | - | chr1_3:62479856-62479875 | Msa0131600:intron | 40.0% | |
| AGTTGATCCAAATCATGGTC+AGG | + | chr1_3:62479866-62479885 | None:intergenic | 40.0% | |
| ! | GGGAAAGTTGATCCAAATCA+TGG | + | chr1_3:62479871-62479890 | None:intergenic | 40.0% |
| ! | ATTAGAAGTGTGAACCGAAC+TGG | - | chr1_3:62479919-62479938 | Msa0131600:CDS | 40.0% |
| TTGTACTCAAACTGCCAGTT+CGG | + | chr1_3:62479936-62479955 | None:intergenic | 40.0% | |
| TGAGTACAAATCAGCAACGA+TGG | - | chr1_3:62479947-62479966 | Msa0131600:CDS | 40.0% | |
| GAGTACAAATCAGCAACGAT+GGG | - | chr1_3:62479948-62479967 | Msa0131600:CDS | 40.0% | |
| AGTACAAATCAGCAACGATG+GGG | - | chr1_3:62479949-62479968 | Msa0131600:CDS | 40.0% | |
| TAAACCATCTATATGCGGAC+AGG | + | chr1_3:62480094-62480113 | None:intergenic | 40.0% | |
| ! | AATTTTATGCTGTAGCCTGC+AGG | - | chr1_3:62480132-62480151 | Msa0131600:intron | 40.0% |
| CATTGCAATACAAATGCCAC+AGG | + | chr1_3:62480977-62480996 | None:intergenic | 40.0% | |
| CTGTGGCATTTGTATTGCAA+TGG | - | chr1_3:62480975-62480994 | Msa0131600:intron | 40.0% | |
| !! | TAGTTTGTTGTTGCCCATGT+TGG | - | chr1_3:62481200-62481219 | Msa0131600:intron | 40.0% |
| !! | AGTTTGTTGTTGCCCATGTT+GGG | - | chr1_3:62481201-62481220 | Msa0131600:intron | 40.0% |
| ACTCAGTATGATCCCAACAT+GGG | + | chr1_3:62481216-62481235 | None:intergenic | 40.0% | |
| AACTCAGTATGATCCCAACA+TGG | + | chr1_3:62481217-62481236 | None:intergenic | 40.0% | |
| GTTCTCCATGTTATCTCTTC+AGG | - | chr1_3:62481240-62481259 | Msa0131600:CDS | 40.0% | |
| GTTTCCCTGAAGAGATAACA+TGG | + | chr1_3:62481248-62481267 | None:intergenic | 40.0% | |
| !! | GAGCGTTGATAAAACTTCCT+TGG | - | chr1_3:62481290-62481309 | Msa0131600:CDS | 40.0% |
| ! | GTGAGTTGTGACCGTATTTT+TGG | - | chr1_3:62481391-62481410 | Msa0131600:intron | 40.0% |
| ! | GGTGTACAGGAACACATTTT+TGG | - | chr1_3:62481650-62481669 | Msa0131600:exon | 40.0% |
| AGAAGAGCTTCGAAGATGCT+TGG | + | chr1_3:62475280-62475299 | None:intergenic | 45.0% | |
| CATCTTCGAAGCTCTTCTCA+CGG | - | chr1_3:62475282-62475301 | Msa0131600:three_prime_UTR | 45.0% | |
| ACACCTTGTAGCTGTAACTC+GGG | + | chr1_3:62475651-62475670 | None:intergenic | 45.0% | |
| !! | CAAGGTGTTGATCCAAGTAG+AGG | - | chr1_3:62475663-62475682 | Msa0131600:intron | 45.0% |
| ! | GTGTTGATCCAAGTAGAGGT+TGG | - | chr1_3:62475667-62475686 | Msa0131600:intron | 45.0% |
| GTTGATCCAAGTAGAGGTTG+GGG | - | chr1_3:62475669-62475688 | Msa0131600:intron | 45.0% | |
| CCATCTTTACAGTTGGAACG+GGG | - | chr1_3:62476916-62476935 | Msa0131600:intron | 45.0% | |
| CATCTTTACAGTTGGAACGG+GGG | - | chr1_3:62476917-62476936 | Msa0131600:intron | 45.0% | |
| ATCTTTACAGTTGGAACGGG+GGG | - | chr1_3:62476918-62476937 | Msa0131600:intron | 45.0% | |
| ATTTGCCTAAACCTGCTCAG+TGG | - | chr1_3:62476973-62476992 | Msa0131600:intron | 45.0% | |
| TGCCGTGCATAATGAAGTAC+TGG | - | chr1_3:62477004-62477023 | Msa0131600:intron | 45.0% | |
| ! | GCCGTGCATAATGAAGTACT+GGG | - | chr1_3:62477005-62477024 | Msa0131600:intron | 45.0% |
| GGAGAGTAGGAACATTGTAG+TGG | - | chr1_3:62477424-62477443 | Msa0131600:intron | 45.0% | |
| TAAAAGACACCACCAAAGGG+TGG | - | chr1_3:62477593-62477612 | Msa0131600:intron | 45.0% | |
| GCACCCACCTAAAAACACTA+AGG | - | chr1_3:62477660-62477679 | Msa0131600:intron | 45.0% | |
| GCACCCACCTAAAAACACTA+AGG | + | chr1_3:62477660-62477679 | None:intergenic | 45.0% | |
| ! | ACAGACGGTGTGCTTTTACA+CGG | - | chr1_3:62479812-62479831 | Msa0131600:intron | 45.0% |
| AAATCAGCAACGATGGGGAT+TGG | - | chr1_3:62479954-62479973 | Msa0131600:CDS | 45.0% | |
| AATCAGCAACGATGGGGATT+GGG | - | chr1_3:62479955-62479974 | Msa0131600:CDS | 45.0% | |
| TTCACCTGTCCGCATATAGA+TGG | - | chr1_3:62480087-62480106 | Msa0131600:intron | 45.0% | |
| !! | TGGGTTTGTTGTGCTGTATG+AGG | - | chr1_3:62480897-62480916 | Msa0131600:intron | 45.0% |
| TAAATTCATGCTGGCAGGAG+AGG | - | chr1_3:62481482-62481501 | Msa0131600:intron | 45.0% | |
| AAATTCATGCTGGCAGGAGA+GGG | - | chr1_3:62481483-62481502 | Msa0131600:intron | 45.0% | |
| !!! | TAAACTTTATTTTAATTAAA+AGG | + | chr1_3:62477780-62477799 | None:intergenic | 5.0% |
| !!! | TAAACTTTATTTTAATTAAA+AGG | + | chr1_3:62477780-62477799 | None:intergenic | 5.0% |
| !! | TATATATATATATATATAGA+GGG | + | chr1_3:62479402-62479421 | None:intergenic | 5.0% |
| !! | ATATATATATATATATATAG+AGG | + | chr1_3:62479435-62479454 | None:intergenic | 5.0% |
| !! | TATATATATATATATATATG+GGG | + | chr1_3:62477514-62477533 | None:intergenic | 5.0% |
| !!! | ATTTAATCATTATATTTTAA+TGG | - | chr1_3:62480227-62480246 | Msa0131600:intron | 5.0% |
| !!! | TTTAATCATTATATTTTAAT+GGG | - | chr1_3:62480228-62480247 | Msa0131600:intron | 5.0% |
| !! | AACAAATAATAATTAAAATA+GGG | + | chr1_3:62480789-62480808 | None:intergenic | 5.0% |
| !! | AAACAAATAATAATTAAAAT+AGG | + | chr1_3:62480790-62480809 | None:intergenic | 5.0% |
| TTGTTGCAGTTCCTCGTTGC+TGG | - | chr1_3:62475227-62475246 | Msa0131600:three_prime_UTR | 50.0% | |
| TAGCATAACACCGCGCTTCT+CGG | + | chr1_3:62475522-62475541 | None:intergenic | 50.0% | |
| CGAAATCCCCAACCTCTACT+TGG | + | chr1_3:62475678-62475697 | None:intergenic | 50.0% | |
| AGTAGAGGTTGGGGATTTCG+CGG | - | chr1_3:62475678-62475697 | Msa0131600:intron | 50.0% | |
| CCCCGTTCCAACTGTAAAGA+TGG | + | chr1_3:62476919-62476938 | None:intergenic | 50.0% | |
| TCTTTACAGTTGGAACGGGG+GGG | - | chr1_3:62476919-62476938 | Msa0131600:intron | 50.0% | |
| TCACGACGAACGCATATCTC+TGG | + | chr1_3:62477218-62477237 | None:intergenic | 50.0% | |
| GAGATATGCGTTCGTCGTGA+TGG | - | chr1_3:62477218-62477237 | Msa0131600:intron | 50.0% | |
| ATGCGTTCGTCGTGATGGTA+CGG | - | chr1_3:62477223-62477242 | Msa0131600:intron | 50.0% | |
| !!! | TGTCTGGGTTTTGGGAGAGT+AGG | - | chr1_3:62477411-62477430 | Msa0131600:intron | 50.0% |
| TGTTACAAGCCACCCTTTGG+TGG | + | chr1_3:62477605-62477624 | None:intergenic | 50.0% | |
| TGAAAGACACCACCAAAGGG+TGG | - | chr1_3:62478293-62478312 | Msa0131600:intron | 50.0% | |
| TGTTACAAGCCACCCTTTGG+TGG | + | chr1_3:62477605-62477624 | None:intergenic | 50.0% | |
| ATTTGGGGACAAATGCGCTG+TGG | - | chr1_3:62480950-62480969 | Msa0131600:intron | 50.0% | |
| TTTGGGGACAAATGCGCTGT+GGG | - | chr1_3:62480951-62480970 | Msa0131600:intron | 50.0% | |
| AAACTTCGCCTCATCAGGAG+TGG | - | chr1_3:62481264-62481283 | Msa0131600:CDS | 50.0% | |
| ! | CTTGTATGGGAGAGGTGTAC+AGG | - | chr1_3:62481637-62481656 | Msa0131600:CDS | 50.0% |
| AGCTTCTGTTCCGAGAAGCG+CGG | - | chr1_3:62475509-62475528 | Msa0131600:intron | 55.0% | |
| AGGCCCGAGTTACAGCTACA+AGG | - | chr1_3:62475645-62475664 | Msa0131600:intron | 55.0% | |
| CGATGCCACTGAGCAGGTTT+AGG | + | chr1_3:62476981-62477000 | None:intergenic | 55.0% | |
| CAGGGAAACTTCGCCTCATC+AGG | - | chr1_3:62481259-62481278 | Msa0131600:CDS | 55.0% | |
| GTAACTCGGGCCTTCCACCA+AGG | + | chr1_3:62475638-62475657 | None:intergenic | 60.0% | |
| GGGATTTCGCGGTGTGCACA+AGG | - | chr1_3:62475689-62475708 | Msa0131600:intron | 60.0% | |
| GCAATGCGATGCCACTGAGC+AGG | + | chr1_3:62476987-62477006 | None:intergenic | 60.0% | |
| ACAAATGCGCTGTGGGCCTG+TGG | - | chr1_3:62480958-62480977 | Msa0131600:intron | 60.0% | |
| CGCTCTCTCCACTCCTGATG+AGG | + | chr1_3:62481275-62481294 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 62475114 | 62481802 | 62475114 | ID=Msa0131600;Name=Msa0131600 |
| chr1_3 | mRNA | 62475114 | 62481802 | 62475114 | ID=Msa0131600-mRNA-1;Parent=Msa0131600;Name=Msa0131600-mRNA-1;_AED=0.04;_eAED=0.04;_QI=138|1|1|1|0.8|0.66|6|287|212 |
| chr1_3 | exon | 62475114 | 62475417 | 62475114 | ID=Msa0131600-mRNA-1:exon:20857;Parent=Msa0131600-mRNA-1 |
| chr1_3 | exon | 62475595 | 62475654 | 62475595 | ID=Msa0131600-mRNA-1:exon:20856;Parent=Msa0131600-mRNA-1 |
| chr1_3 | exon | 62479677 | 62479777 | 62479677 | ID=Msa0131600-mRNA-1:exon:20855;Parent=Msa0131600-mRNA-1 |
| chr1_3 | exon | 62479859 | 62480067 | 62479859 | ID=Msa0131600-mRNA-1:exon:20854;Parent=Msa0131600-mRNA-1 |
| chr1_3 | exon | 62481206 | 62481405 | 62481206 | ID=Msa0131600-mRNA-1:exon:20853;Parent=Msa0131600-mRNA-1 |
| chr1_3 | exon | 62481613 | 62481802 | 62481613 | ID=Msa0131600-mRNA-1:exon:20852;Parent=Msa0131600-mRNA-1 |
| chr1_3 | five_prime_UTR | 62481665 | 62481802 | 62481665 | ID=Msa0131600-mRNA-1:five_prime_utr;Parent=Msa0131600-mRNA-1 |
| chr1_3 | CDS | 62481613 | 62481664 | 62481613 | ID=Msa0131600-mRNA-1:cds;Parent=Msa0131600-mRNA-1 |
| chr1_3 | CDS | 62481206 | 62481405 | 62481206 | ID=Msa0131600-mRNA-1:cds;Parent=Msa0131600-mRNA-1 |
| chr1_3 | CDS | 62479859 | 62480067 | 62479859 | ID=Msa0131600-mRNA-1:cds;Parent=Msa0131600-mRNA-1 |
| chr1_3 | CDS | 62479677 | 62479777 | 62479677 | ID=Msa0131600-mRNA-1:cds;Parent=Msa0131600-mRNA-1 |
| chr1_3 | CDS | 62475595 | 62475654 | 62475595 | ID=Msa0131600-mRNA-1:cds;Parent=Msa0131600-mRNA-1 |
| chr1_3 | CDS | 62475401 | 62475417 | 62475401 | ID=Msa0131600-mRNA-1:cds;Parent=Msa0131600-mRNA-1 |
| chr1_3 | three_prime_UTR | 62475114 | 62475400 | 62475114 | ID=Msa0131600-mRNA-1:three_prime_utr;Parent=Msa0131600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
