Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1268880 | sp|Q9FNQ1|DEXHE_ARATH | 86.325 | 117 | 12 | 1 | 157 | 273 | 1494 | 1606 | 1.04e-60 | 212 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1268880 | I3SDS4 | 94.366 | 142 | 8 | 0 | 1 | 142 | 1 | 142 | 1.50e-87 | 272 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006110 | Msa1268880 | 0.813219 | 2.859354e-51 | -8.615850e-47 |
| Msa0007990 | Msa1268880 | 0.803015 | 4.264839e-49 | -8.615850e-47 |
| Msa0015390 | Msa1268880 | 0.805985 | 1.024694e-49 | -8.615850e-47 |
| Msa0015400 | Msa1268880 | 0.814281 | 1.669084e-51 | -8.615850e-47 |
| Msa0026450 | Msa1268880 | 0.814158 | 1.776124e-51 | -8.615850e-47 |
| Msa0043560 | Msa1268880 | 0.804961 | 1.679802e-49 | -8.615850e-47 |
| Msa0105070 | Msa1268880 | 0.800330 | 1.516200e-48 | -8.615850e-47 |
| Msa0117710 | Msa1268880 | 0.809662 | 1.693475e-50 | -8.615850e-47 |
| Msa0622170 | Msa1268880 | -0.802548 | 5.325736e-49 | -8.615850e-47 |
| Msa0625190 | Msa1268880 | 0.808320 | 3.281085e-50 | -8.615850e-47 |
| Msa0640860 | Msa1268880 | 0.800214 | 1.600464e-48 | -8.615850e-47 |
| Msa0661650 | Msa1268880 | 0.804385 | 2.215944e-49 | -8.615850e-47 |
| Msa0685900 | Msa1268880 | 0.800034 | 1.741215e-48 | -8.615850e-47 |
| Msa0693380 | Msa1268880 | 0.802529 | 5.373699e-49 | -8.615850e-47 |
| Msa0703780 | Msa1268880 | 0.800972 | 1.121232e-48 | -8.615850e-47 |
| Msa0731940 | Msa1268880 | 0.826313 | 2.905724e-54 | -8.615850e-47 |
| Msa0735170 | Msa1268880 | 0.811160 | 8.045620e-51 | -8.615850e-47 |
| Msa0753720 | Msa1268880 | 0.818195 | 2.225318e-52 | -8.615850e-47 |
| Msa0756320 | Msa1268880 | 0.834226 | 3.387109e-56 | -8.615850e-47 |
| Msa0760130 | Msa1268880 | 0.809137 | 2.195447e-50 | -8.615850e-47 |
| Msa0762360 | Msa1268880 | 0.829313 | 5.521652e-55 | -8.615850e-47 |
| Msa0766630 | Msa1268880 | 0.825641 | 4.196461e-54 | -8.615850e-47 |
| Msa0768370 | Msa1268880 | 0.807354 | 5.265460e-50 | -8.615850e-47 |
| Msa0800210 | Msa1268880 | 0.811677 | 6.211119e-51 | -8.615850e-47 |
| Msa0810220 | Msa1268880 | 0.808016 | 3.808761e-50 | -8.615850e-47 |
| Msa0831850 | Msa1268880 | 0.804235 | 2.381205e-49 | -8.615850e-47 |
| Msa0832340 | Msa1268880 | 0.801062 | 1.074826e-48 | -8.615850e-47 |
| Msa0130970 | Msa1268880 | 0.802276 | 6.057622e-49 | -8.615850e-47 |
| Msa0131770 | Msa1268880 | 0.841663 | 4.144981e-58 | -8.615850e-47 |
| Msa0142220 | Msa1268880 | 0.825697 | 4.070617e-54 | -8.615850e-47 |
| Msa0145260 | Msa1268880 | 0.806530 | 7.865961e-50 | -8.615850e-47 |
| Msa0149300 | Msa1268880 | 0.801728 | 7.852283e-49 | -8.615850e-47 |
| Msa0153830 | Msa1268880 | 0.800822 | 1.203320e-48 | -8.615850e-47 |
| Msa0165520 | Msa1268880 | 0.818465 | 1.932329e-52 | -8.615850e-47 |
| Msa0187830 | Msa1268880 | 0.802531 | 5.369019e-49 | -8.615850e-47 |
| Msa0190530 | Msa1268880 | 0.810567 | 1.080798e-50 | -8.615850e-47 |
| Msa0212990 | Msa1268880 | 0.809023 | 2.322749e-50 | -8.615850e-47 |
| Msa0218370 | Msa1268880 | 0.804542 | 2.055152e-49 | -8.615850e-47 |
| Msa0218810 | Msa1268880 | 0.828521 | 8.582581e-55 | -8.615850e-47 |
| Msa0233080 | Msa1268880 | 0.820586 | 6.344308e-53 | -8.615850e-47 |
| Msa0233300 | Msa1268880 | 0.801251 | 9.832702e-49 | -8.615850e-47 |
| Msa1248310 | Msa1268880 | 0.806105 | 9.668947e-50 | -8.615850e-47 |
| Msa1248370 | Msa1268880 | 0.816501 | 5.354180e-52 | -8.615850e-47 |
| Msa1268880 | Msa1284680 | 0.834465 | 2.950160e-56 | -8.615850e-47 |
| Msa1268880 | Msa1304890 | -0.802471 | 5.524157e-49 | -8.615850e-47 |
| Msa1268880 | Msa1353470 | 0.834863 | 2.343066e-56 | -8.615850e-47 |
| Msa1268880 | Msa1360610 | 0.803247 | 3.818715e-49 | -8.615850e-47 |
| Msa1268880 | Msa1376930 | 0.801366 | 9.313399e-49 | -8.615850e-47 |
| Msa1268880 | Msa1379500 | 0.801013 | 1.099846e-48 | -8.615850e-47 |
| Msa1268880 | Msa1388930 | 0.814627 | 1.398889e-51 | -8.615850e-47 |
| Msa1268880 | Msa1394380 | 0.801487 | 8.799568e-49 | -8.615850e-47 |
| Msa1268880 | Msa1410680 | 0.811808 | 5.818314e-51 | -8.615850e-47 |
| Msa1268880 | Msa1420820 | 0.804491 | 2.106096e-49 | -8.615850e-47 |
| Msa1268880 | Msa1435270 | 0.821017 | 5.048372e-53 | -8.615850e-47 |
| Msa1268880 | Msa1453320 | 0.806369 | 8.506421e-50 | -8.615850e-47 |
| Msa1268880 | Msa1466540 | 0.809102 | 2.234029e-50 | -8.615850e-47 |
| Msa0376590 | Msa1268880 | 0.800955 | 1.130261e-48 | -8.615850e-47 |
| Msa0381610 | Msa1268880 | -0.804315 | 2.291817e-49 | -8.615850e-47 |
| Msa0388960 | Msa1268880 | 0.804604 | 1.994792e-49 | -8.615850e-47 |
| Msa0411390 | Msa1268880 | 0.819198 | 1.316904e-52 | -8.615850e-47 |
| Msa0413410 | Msa1268880 | 0.802757 | 4.821027e-49 | -8.615850e-47 |
| Msa0436800 | Msa1268880 | 0.813513 | 2.464398e-51 | -8.615850e-47 |
| Msa0455760 | Msa1268880 | 0.816934 | 4.280983e-52 | -8.615850e-47 |
| Msa0469940 | Msa1268880 | -0.800891 | 1.165002e-48 | -8.615850e-47 |
| Msa0479340 | Msa1268880 | 0.851768 | 7.156989e-61 | -8.615850e-47 |
| Msa1002360 | Msa1268880 | 0.800523 | 1.384904e-48 | -8.615850e-47 |
| Msa1014540 | Msa1268880 | 0.811171 | 8.001088e-51 | -8.615850e-47 |
| Msa1014990 | Msa1268880 | 0.805177 | 1.514150e-49 | -8.615850e-47 |
| Msa1015490 | Msa1268880 | 0.829992 | 3.773290e-55 | -8.615850e-47 |
| Msa1016320 | Msa1268880 | 0.812276 | 4.600388e-51 | -8.615850e-47 |
| Msa1019150 | Msa1268880 | 0.809576 | 1.767323e-50 | -8.615850e-47 |
| Msa1039710 | Msa1268880 | -0.809072 | 2.267188e-50 | -8.615850e-47 |
| Msa1075220 | Msa1268880 | -0.810408 | 1.169703e-50 | -8.615850e-47 |
| Msa1079430 | Msa1268880 | 0.817117 | 3.893403e-52 | -8.615850e-47 |
| Msa1082500 | Msa1268880 | 0.810948 | 8.940664e-51 | -8.615850e-47 |
| Msa1083840 | Msa1268880 | 0.811357 | 7.289766e-51 | -8.615850e-47 |
| Msa1101090 | Msa1268880 | 0.805166 | 1.522144e-49 | -8.615850e-47 |
| Msa0264830 | Msa1268880 | 0.807569 | 4.740644e-50 | -8.615850e-47 |
| Msa0273100 | Msa1268880 | 0.832983 | 6.921275e-56 | -8.615850e-47 |
| Msa0275000 | Msa1268880 | 0.800790 | 1.221550e-48 | -8.615850e-47 |
| Msa0290870 | Msa1268880 | 0.846146 | 2.608463e-59 | -8.615850e-47 |
| Msa0302870 | Msa1268880 | 0.802785 | 4.758054e-49 | -8.615850e-47 |
| Msa0307540 | Msa1268880 | 0.832981 | 6.929253e-56 | -8.615850e-47 |
| Msa0319170 | Msa1268880 | 0.815159 | 1.066287e-51 | -8.615850e-47 |
| Msa0321080 | Msa1268880 | 0.804133 | 2.500858e-49 | -8.615850e-47 |
| Msa0321310 | Msa1268880 | 0.816979 | 4.182313e-52 | -8.615850e-47 |
| Msa0330340 | Msa1268880 | 0.803953 | 2.725156e-49 | -8.615850e-47 |
| Msa0340340 | Msa1268880 | 0.808600 | 2.859398e-50 | -8.615850e-47 |
| Msa0344690 | Msa1268880 | -0.803305 | 3.714956e-49 | -8.615850e-47 |
| Msa0363790 | Msa1268880 | 0.800231 | 1.588214e-48 | -8.615850e-47 |
| Msa1117150 | Msa1268880 | 0.808179 | 3.517084e-50 | -8.615850e-47 |
| Msa1121480 | Msa1268880 | 0.851523 | 8.394900e-61 | -8.615850e-47 |
| Msa1121490 | Msa1268880 | 0.856729 | 2.642694e-62 | -8.615850e-47 |
| Msa1135220 | Msa1268880 | 0.816732 | 4.751324e-52 | -8.615850e-47 |
| Msa1137570 | Msa1268880 | 0.837023 | 6.635674e-57 | -8.615850e-47 |
| Msa1147740 | Msa1268880 | 0.812255 | 4.647323e-51 | -8.615850e-47 |
| Msa1158310 | Msa1268880 | 0.803239 | 3.832539e-49 | -8.615850e-47 |
| Msa1162550 | Msa1268880 | -0.815980 | 7.000743e-52 | -8.615850e-47 |
| Msa1188710 | Msa1268880 | 0.808180 | 3.514688e-50 | -8.615850e-47 |
| Msa0493000 | Msa1268880 | 0.821026 | 5.023794e-53 | -8.615850e-47 |
| Msa0495330 | Msa1268880 | 0.807806 | 4.222833e-50 | -8.615850e-47 |
| Msa0512750 | Msa1268880 | 0.801069 | 1.071239e-48 | -8.615850e-47 |
| Msa0526070 | Msa1268880 | -0.801618 | 8.270517e-49 | -8.615850e-47 |
| Msa0532350 | Msa1268880 | 0.801061 | 1.075497e-48 | -8.615850e-47 |
| Msa0559500 | Msa1268880 | 0.804670 | 1.932777e-49 | -8.615850e-47 |
| Msa0565350 | Msa1268880 | 0.807508 | 4.885583e-50 | -8.615850e-47 |
| Msa0585230 | Msa1268880 | 0.806396 | 8.397301e-50 | -8.615850e-47 |
| Msa0600700 | Msa1268880 | 0.802519 | 5.398978e-49 | -8.615850e-47 |
| Msa0842650 | Msa1268880 | 0.805103 | 1.568807e-49 | -8.615850e-47 |
| Msa0842710 | Msa1268880 | 0.810596 | 1.065533e-50 | -8.615850e-47 |
| Msa0844490 | Msa1268880 | 0.808968 | 2.386451e-50 | -8.615850e-47 |
| Msa0861130 | Msa1268880 | 0.800919 | 1.149709e-48 | -8.615850e-47 |
| Msa0864070 | Msa1268880 | 0.816505 | 5.341689e-52 | -8.615850e-47 |
| Msa0897330 | Msa1268880 | 0.802165 | 6.386492e-49 | -8.615850e-47 |
| Msa0899430 | Msa1268880 | 0.800425 | 1.449886e-48 | -8.615850e-47 |
| Msa0914270 | Msa1268880 | 0.836595 | 8.535875e-57 | -8.615850e-47 |
| Msa0924310 | Msa1268880 | 0.803627 | 3.184851e-49 | -8.615850e-47 |
| Msa0927380 | Msa1268880 | 0.823953 | 1.049322e-53 | -8.615850e-47 |
| Msa0933100 | Msa1268880 | 0.807901 | 4.029438e-50 | -8.615850e-47 |
| Msa0936390 | Msa1268880 | 0.830683 | 2.558590e-55 | -8.615850e-47 |
| Msa0953120 | Msa1268880 | 0.800802 | 1.214903e-48 | -8.615850e-47 |
| Msa0966750 | Msa1268880 | 0.807961 | 3.914526e-50 | -8.615850e-47 |
| Msa0967280 | Msa1268880 | 0.803264 | 3.786993e-49 | -8.615850e-47 |
| Msa0969450 | Msa1268880 | 0.831746 | 1.401739e-55 | -8.615850e-47 |
| Msa0969520 | Msa1268880 | 0.841390 | 4.891761e-58 | -8.615850e-47 |
| Msa0974080 | Msa1268880 | 0.800498 | 1.401364e-48 | -8.615850e-47 |
| Msa0975220 | Msa1268880 | 0.803988 | 2.679598e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1268880 | MtrunA17_Chr4g0038571 | 94.366 | 142 | 8 | 0 | 1 | 142 | 1 | 142 | 2.89e-91 | 272 |
| Msa1268880 | MtrunA17_Chr3g0142691 | 70.130 | 154 | 42 | 1 | 1 | 150 | 1 | 154 | 4.08e-73 | 226 |
| Msa1268880 | MtrunA17_Chr3g0086711 | 89.744 | 117 | 8 | 1 | 157 | 273 | 1424 | 1536 | 9.52e-65 | 220 |
| Msa1268880 | MtrunA17_Chr2g0312441 | 49.573 | 117 | 54 | 2 | 157 | 272 | 1511 | 1623 | 1.06e-28 | 116 |
| Msa1268880 | MtrunA17_Chr4g0003841 | 46.610 | 118 | 58 | 2 | 156 | 272 | 1465 | 1578 | 7.92e-28 | 113 |
| Msa1268880 | MtrunA17_Chr8g0339351 | 43.382 | 136 | 76 | 1 | 1 | 135 | 1 | 136 | 1.89e-25 | 102 |
| Msa1268880 | MtrunA17_Chr8g0339421 | 49.275 | 69 | 35 | 0 | 74 | 142 | 65 | 133 | 2.81e-14 | 71.2 |
| Msa1268880 | MtrunA17_Chr8g0339371 | 45.588 | 68 | 37 | 0 | 75 | 142 | 16 | 83 | 3.04e-13 | 64.3 |
| Msa1268880 | MtrunA17_Chr8g0339391 | 40.000 | 70 | 42 | 0 | 6 | 75 | 7 | 76 | 1.92e-12 | 62.4 |
| Msa1268880 | MtrunA17_Chr2g0312351 | 39.394 | 99 | 52 | 3 | 176 | 273 | 541 | 632 | 2.24e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1268880 | AT2G21190.1 | 84.892 | 139 | 21 | 0 | 5 | 143 | 2 | 140 | 4.02e-81 | 246 |
| Msa1268880 | AT4G38790.1 | 81.295 | 139 | 26 | 0 | 5 | 143 | 6 | 144 | 1.29e-77 | 238 |
| Msa1268880 | AT1G75760.3 | 79.577 | 142 | 29 | 0 | 1 | 142 | 1 | 142 | 2.38e-76 | 233 |
| Msa1268880 | AT1G75760.1 | 74.839 | 155 | 35 | 1 | 1 | 151 | 1 | 155 | 1.20e-75 | 233 |
| Msa1268880 | AT1G75760.2 | 75.325 | 154 | 34 | 1 | 1 | 150 | 1 | 154 | 1.28e-75 | 232 |
| Msa1268880 | AT1G19970.2 | 68.310 | 142 | 45 | 0 | 1 | 142 | 1 | 142 | 2.28e-68 | 213 |
| Msa1268880 | AT1G19970.1 | 68.310 | 142 | 45 | 0 | 1 | 142 | 1 | 142 | 5.82e-68 | 213 |
| Msa1268880 | AT5G61140.1 | 86.325 | 117 | 12 | 1 | 157 | 273 | 1483 | 1595 | 1.00e-61 | 212 |
| Msa1268880 | AT5G61140.2 | 86.325 | 117 | 12 | 1 | 157 | 273 | 1494 | 1606 | 1.06e-61 | 212 |
| Msa1268880 | AT3G25160.1 | 51.773 | 141 | 68 | 0 | 2 | 142 | 4 | 144 | 3.92e-45 | 154 |
| Msa1268880 | AT1G20960.1 | 48.718 | 117 | 55 | 2 | 157 | 272 | 1491 | 1603 | 1.54e-27 | 113 |
| Msa1268880 | AT1G20960.2 | 48.718 | 117 | 55 | 2 | 157 | 272 | 1491 | 1603 | 1.54e-27 | 113 |
| Msa1268880 | AT2G42270.1 | 47.863 | 117 | 56 | 2 | 157 | 272 | 1492 | 1604 | 2.43e-27 | 112 |
Find 70 sgRNAs with CRISPR-Local
Find 263 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTCACACCATACTTGATT+TGG | 0.298660 | 8_3:+2015855 | Msa1268880:CDS |
| AAAATATAGTTGTCAATTCC+TGG | 0.319606 | 8_3:-2015792 | None:intergenic |
| CGTGGGCAGTAATACTTTCC+AGG | 0.403893 | 8_3:-2018029 | None:intergenic |
| CTAGGGCAGTAAGTCTTGTT+TGG | 0.406347 | 8_3:-2018139 | None:intergenic |
| TGTTGGCCTTTCTACAGCTC+TGG | 0.407571 | 8_3:+2017452 | Msa1268880:CDS |
| AAGTGTGAGGCCTGTACCTT+TGG | 0.408204 | 8_3:+2017746 | Msa1268880:CDS |
| TACTGCCCTAGATCTAATTC+AGG | 0.411987 | 8_3:+2018151 | Msa1268880:CDS |
| AAAAGTCGCCAAATCAAGTA+TGG | 0.420484 | 8_3:-2015863 | None:intergenic |
| TCTACAGCTCTGGCAAATGC+TGG | 0.420777 | 8_3:+2017462 | Msa1268880:CDS |
| GCGAGAAAATCCTTGACCTT+TGG | 0.425408 | 8_3:-2015172 | None:intergenic |
| TTTAGGATGAAACAAACAAT+TGG | 0.430492 | 8_3:-2015983 | None:intergenic |
| GTCTTCTTATAGGGATATCC+TGG | 0.432204 | 8_3:+2018011 | Msa1268880:intron |
| GCTGAAGCTGTTCACTCGCT+TGG | 0.434191 | 8_3:+2015268 | Msa1268880:CDS |
| TATGTACCTGAATTAGATCT+AGG | 0.435118 | 8_3:-2018157 | None:intergenic |
| TCCTATCTATAAACTCTTGA+AGG | 0.435616 | 8_3:+2015300 | Msa1268880:CDS |
| CTAAACTTACAGGAAGAAAC+AGG | 0.444412 | 8_3:+2018579 | Msa1268880:intron |
| TGTGATCATGAACGATAAAT+CGG | 0.448285 | 8_3:-2015228 | None:intergenic |
| AGAAAATCCTTGACCTTTGG+TGG | 0.452552 | 8_3:-2015169 | None:intergenic |
| TCCTTCAAGAGTTTATAGAT+AGG | 0.454719 | 8_3:-2015301 | None:intergenic |
| TGCTACTGAGATGCGAAAGA+AGG | 0.460175 | 8_3:+2018604 | Msa1268880:CDS |
| TTTGTAGTGATCTAGCTGAT+TGG | 0.466143 | 8_3:+2017685 | Msa1268880:intron |
| AAACAACATATCCACTTGCC+TGG | 0.467925 | 8_3:-2017779 | None:intergenic |
| GATGAGACAAATATAAGAAC+TGG | 0.468051 | 8_3:-2018110 | None:intergenic |
| GAGCGTCCAGTACGGTTTGT+TGG | 0.472268 | 8_3:+2017435 | Msa1268880:CDS |
| ACGCCATCTCCACATGGGTC+AGG | 0.477787 | 8_3:+2015140 | Msa1268880:CDS |
| TTGAAGGAGAAGACTTGTGC+TGG | 0.478513 | 8_3:+2015316 | Msa1268880:CDS |
| TCTCGCCGTTGTTTCCGGTA+TGG | 0.487407 | 8_3:+2015189 | Msa1268880:CDS |
| AAATATAGTTGTCAATTCCT+GGG | 0.492306 | 8_3:-2015791 | None:intergenic |
| GAGAACAAGAGCGGCCATAC+CGG | 0.503947 | 8_3:-2015203 | None:intergenic |
| AGTGATCTAGCTGATTGGTT+AGG | 0.504892 | 8_3:+2017690 | Msa1268880:intron |
| ACCTTTGGAAGTTCATATCC+AGG | 0.507922 | 8_3:+2017761 | Msa1268880:CDS |
| TAAATTGAAGGCAAGTTACA+TGG | 0.508529 | 8_3:+2015921 | Msa1268880:CDS |
| AATATAAGAACTGGTTTCGC+AGG | 0.515638 | 8_3:-2018101 | None:intergenic |
| TTCTTATATTTGTCTCATCA+CGG | 0.519247 | 8_3:+2018114 | Msa1268880:CDS |
| TCGCCTGACCCATGTGGAGA+TGG | 0.520457 | 8_3:-2015143 | None:intergenic |
| TAACTTTGCAATTTACTATG+TGG | 0.522735 | 8_3:+2015954 | Msa1268880:CDS |
| TGGTTAGGCGTGGAGGAGAT+CGG | 0.532554 | 8_3:+2017705 | Msa1268880:CDS |
| GAAAGGCCAACAAACCGTAC+TGG | 0.536063 | 8_3:-2017441 | None:intergenic |
| ATGGCGTGGATCGATGTTCT+CGG | 0.536699 | 8_3:-2015124 | None:intergenic |
| CGATCCACGCCATCTCCACA+TGG | 0.539860 | 8_3:+2015134 | Msa1268880:CDS |
| GAGATGCGAAAGAAGGGAGT+TGG | 0.540849 | 8_3:+2018611 | Msa1268880:CDS |
| AAAGGTACAGGCCTCACACT+TGG | 0.541345 | 8_3:-2017744 | None:intergenic |
| ATATGAACTTCCAAAGGTAC+AGG | 0.545498 | 8_3:-2017756 | None:intergenic |
| GGCAAGTTACATGGAAGAGA+AGG | 0.551103 | 8_3:+2015930 | Msa1268880:CDS |
| GTGCATATTGCAGCATATGC+TGG | 0.555234 | 8_3:-2018071 | None:intergenic |
| CTACAGCTCTGGCAAATGCT+GGG | 0.557502 | 8_3:+2017463 | Msa1268880:CDS |
| CATTTGCCAGAGCTGTAGAA+AGG | 0.558833 | 8_3:-2017458 | None:intergenic |
| TTATTCACACTGTTCATCCG+TGG | 0.568315 | 8_3:-2018047 | None:intergenic |
| GAAGTTCATATCCAGGCAAG+TGG | 0.568778 | 8_3:+2017768 | Msa1268880:CDS |
| GCTACTGAGATGCGAAAGAA+GGG | 0.574228 | 8_3:+2018605 | Msa1268880:CDS |
| AGGATTATCACTCAAATCCC+AGG | 0.579664 | 8_3:+2015774 | Msa1268880:intron |
| ATGTACCTGAATTAGATCTA+GGG | 0.582500 | 8_3:-2018156 | None:intergenic |
| AGCTGATTGGTTAGGCGTGG+AGG | 0.586078 | 8_3:+2017698 | Msa1268880:CDS |
| AGCGGCCATACCGGAAACAA+CGG | 0.587869 | 8_3:-2015194 | None:intergenic |
| CTGGAAAGTATTACTGCCCA+CGG | 0.593472 | 8_3:+2018030 | Msa1268880:CDS |
| TCTAGCTGATTGGTTAGGCG+TGG | 0.605833 | 8_3:+2017695 | Msa1268880:CDS |
| TGACCCATGTGGAGATGGCG+TGG | 0.610245 | 8_3:-2015138 | None:intergenic |
| GCCTGGATATGAACTTCCAA+AGG | 0.610548 | 8_3:-2017762 | None:intergenic |
| CACAAACTGAGCGTCCAGTA+CGG | 0.614755 | 8_3:+2017427 | Msa1268880:CDS |
| AAATTACCTTCCCCTTAGAG+TGG | 0.617889 | 8_3:-2018663 | None:intergenic |
| TATTCACACTGTTCATCCGT+GGG | 0.619058 | 8_3:-2018046 | None:intergenic |
| GCGACAACCACCAAAGGTCA+AGG | 0.619702 | 8_3:+2015162 | Msa1268880:CDS |
| GGTCAGGCGACAACCACCAA+AGG | 0.628509 | 8_3:+2015156 | Msa1268880:CDS |
| TCAATTTCAAGCCAAGTGTG+AGG | 0.634593 | 8_3:+2017733 | Msa1268880:CDS |
| GATCCACGCCATCTCCACAT+GGG | 0.685742 | 8_3:+2015135 | Msa1268880:CDS |
| GATCATGAACGATAAATCGG+AGG | 0.693672 | 8_3:-2015225 | None:intergenic |
| AAATCGGAGGAGAACAAGAG+CGG | 0.713382 | 8_3:-2015212 | None:intergenic |
| GCGTGGATCGATGTTCTCGG+AGG | 0.719860 | 8_3:-2015121 | None:intergenic |
| TGGTTGTCGCCTGACCCATG+TGG | 0.729979 | 8_3:-2015149 | None:intergenic |
| CATGTATATAACCCACACCG+TGG | 0.788770 | 8_3:-2015890 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAGAATTGAATTTTTT+TGG | + | chr8_3:2015369-2015388 | Msa1268880:intron | 10.0% |
| !!! | AAAAAGAATTGAATTTTTTT+GGG | + | chr8_3:2015370-2015389 | Msa1268880:intron | 10.0% |
| !!! | ACATAAAGAATTTTTTTTTT+GGG | + | chr8_3:2016930-2016949 | Msa1268880:intron | 10.0% |
| !!! | AATTTTGAAACAAATTATTT+TGG | - | chr8_3:2017081-2017100 | None:intergenic | 10.0% |
| !!! | TAGTTTTAAAAGTAATATTT+TGG | - | chr8_3:2017174-2017193 | None:intergenic | 10.0% |
| !! | AAATAATATTTGATTCATTA+TGG | + | chr8_3:2018196-2018215 | Msa1268880:intron | 10.0% |
| !! | ATATATATATATATATTTGG+AGG | + | chr8_3:2018486-2018505 | Msa1268880:intron | 10.0% |
| !! | TGAATGATAAAACATAAAAA+GGG | - | chr8_3:2015462-2015481 | None:intergenic | 15.0% |
| !! | TTGAATGATAAAACATAAAA+AGG | - | chr8_3:2015463-2015482 | None:intergenic | 15.0% |
| !!! | TTTTATGTTTTATCATTCAA+AGG | + | chr8_3:2015463-2015482 | Msa1268880:intron | 15.0% |
| !!! | AGGTTAGTTTTTTTAATAAT+TGG | + | chr8_3:2015483-2015502 | Msa1268880:intron | 15.0% |
| !!! | ATGAAAAAGATCAATTTTTT+GGG | + | chr8_3:2015548-2015567 | Msa1268880:intron | 15.0% |
| !!! | ATTTTTTTCCTACTTTTTTA+TGG | + | chr8_3:2016051-2016070 | Msa1268880:intron | 15.0% |
| !!! | CACATAAAGAATTTTTTTTT+TGG | + | chr8_3:2016929-2016948 | Msa1268880:intron | 15.0% |
| !!! | CATAAAGAATTTTTTTTTTG+GGG | + | chr8_3:2016931-2016950 | Msa1268880:intron | 15.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | - | chr8_3:2017198-2017217 | None:intergenic | 15.0% |
| !! | AATAGTTAATAAGGATAATT+TGG | + | chr8_3:2017197-2017216 | Msa1268880:intron | 15.0% |
| !! | AATGATTAAAAGAAAGATAA+TGG | - | chr8_3:2017231-2017250 | None:intergenic | 15.0% |
| !!! | TCTTTTTTTGTAAAATCGAA+GGG | - | chr8_3:2015357-2015376 | None:intergenic | 20.0% |
| !!! | TTCTTTTTTTGTAAAATCGA+AGG | - | chr8_3:2015358-2015377 | None:intergenic | 20.0% |
| !!! | TTTGAATCTTTTTGTTTTCT+TGG | + | chr8_3:2015405-2015424 | Msa1268880:intron | 20.0% |
| !!! | TTGAATCTTTTTGTTTTCTT+GGG | + | chr8_3:2015406-2015425 | Msa1268880:intron | 20.0% |
| !! | GAATGATAAAACATAAAAAG+GGG | - | chr8_3:2015461-2015480 | None:intergenic | 20.0% |
| !!! | CATGAAAAAGATCAATTTTT+TGG | + | chr8_3:2015547-2015566 | Msa1268880:intron | 20.0% |
| !! | ATTGCTCTTAAAAAATTACA+TGG | + | chr8_3:2015607-2015626 | Msa1268880:intron | 20.0% |
| !! | TTGCTCTTAAAAAATTACAT+GGG | + | chr8_3:2015608-2015627 | Msa1268880:intron | 20.0% |
| !!! | CATGATTCATTTTAAATTGA+AGG | + | chr8_3:2015909-2015928 | Msa1268880:CDS | 20.0% |
| !! | AGAACAAATAGTTAAAGATT+CGG | - | chr8_3:2016214-2016233 | None:intergenic | 20.0% |
| !! | ACCAGAAACAATAAAATTAA+AGG | + | chr8_3:2016758-2016777 | Msa1268880:intron | 20.0% |
| !! | CCAGAAACAATAAAATTAAA+GGG | + | chr8_3:2016759-2016778 | Msa1268880:intron | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | - | chr8_3:2017111-2017130 | None:intergenic | 20.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | + | chr8_3:2017188-2017207 | Msa1268880:intron | 20.0% |
| !! | ATCAAAAACCAAACAAAAAA+CGG | - | chr8_3:2017829-2017848 | None:intergenic | 20.0% |
| !! | AGATCAAGATATAAGATTTA+AGG | - | chr8_3:2018561-2018580 | None:intergenic | 20.0% |
| !!! | TTTTTTTGTAAAATCGAAGG+GGG | - | chr8_3:2015355-2015374 | None:intergenic | 25.0% |
| !!! | CTTTTTTTGTAAAATCGAAG+GGG | - | chr8_3:2015356-2015375 | None:intergenic | 25.0% |
| ! | AAAAAACATAAAACGTTGCA+TGG | + | chr8_3:2015522-2015541 | Msa1268880:intron | 25.0% |
| ! | AAAAACATAAAACGTTGCAT+GGG | + | chr8_3:2015523-2015542 | Msa1268880:intron | 25.0% |
| !! | AGATTTTTATCCCTTTAGAT+TGG | + | chr8_3:2015583-2015602 | Msa1268880:intron | 25.0% |
| !!! | GTTAATTTGATTTGTGTTTG+TGG | + | chr8_3:2015649-2015668 | Msa1268880:intron | 25.0% |
| !!! | TTGGCTTAATGTGTTATTTT+TGG | + | chr8_3:2015672-2015691 | Msa1268880:intron | 25.0% |
| ! | AAATATAGTTGTCAATTCCT+GGG | - | chr8_3:2015794-2015813 | None:intergenic | 25.0% |
| ! | AAAATATAGTTGTCAATTCC+TGG | - | chr8_3:2015795-2015814 | None:intergenic | 25.0% |
| !!! | CAACTATATTTTTAGCTGTT+AGG | + | chr8_3:2015803-2015822 | Msa1268880:CDS | 25.0% |
| ! | TAACTTTGCAATTTACTATG+TGG | + | chr8_3:2015954-2015973 | Msa1268880:CDS | 25.0% |
| !! | TTTAGGATGAAACAAACAAT+TGG | - | chr8_3:2015986-2016005 | None:intergenic | 25.0% |
| !! | AAGGCAATGCTTTTAAATTT+AGG | - | chr8_3:2016003-2016022 | None:intergenic | 25.0% |
| ! | TTGACACAAAAACATCAATA+AGG | - | chr8_3:2016022-2016041 | None:intergenic | 25.0% |
| !!! | TATTGATGTTTTTGTGTCAA+TGG | + | chr8_3:2016022-2016041 | Msa1268880:CDS | 25.0% |
| ! | CATCTTTACCATAAAAAAGT+AGG | - | chr8_3:2016062-2016081 | None:intergenic | 25.0% |
| ! | TAGAATACTGAGATATTTGA+TGG | - | chr8_3:2016540-2016559 | None:intergenic | 25.0% |
| !!! | TGATTTTAATGATGTCAAGA+TGG | - | chr8_3:2016712-2016731 | None:intergenic | 25.0% |
| !!! | CCCTTTAATTTTATTGTTTC+TGG | - | chr8_3:2016762-2016781 | None:intergenic | 25.0% |
| !!! | AAAGAATTTTTTTTTTGGGG+AGG | + | chr8_3:2016934-2016953 | Msa1268880:intron | 25.0% |
| !!! | AAGAATTTTTTTTTTGGGGA+GGG | + | chr8_3:2016935-2016954 | Msa1268880:intron | 25.0% |
| ! | AGTATTACTTGAGAAGAAAT+GGG | - | chr8_3:2017002-2017021 | None:intergenic | 25.0% |
| !!! | GTTTTTAGGTTATTGTTTCT+AGG | + | chr8_3:2017388-2017407 | Msa1268880:intron | 25.0% |
| ! | AAAACATACACGAATAATAG+TGG | - | chr8_3:2017562-2017581 | None:intergenic | 25.0% |
| ! | AATAGAAGGGGAAAAAAATA+AGG | - | chr8_3:2017667-2017686 | None:intergenic | 25.0% |
| ! | TTACAAATATGCTAACTACT+TGG | + | chr8_3:2017989-2018008 | Msa1268880:intron | 25.0% |
| ! | TTCTTATATTTGTCTCATCA+CGG | + | chr8_3:2018114-2018133 | Msa1268880:CDS | 25.0% |
| ! | ATTATTTCCCAAAAGAGATT+GGG | - | chr8_3:2018183-2018202 | None:intergenic | 25.0% |
| ! | TATTATTTCCCAAAAGAGAT+TGG | - | chr8_3:2018184-2018203 | None:intergenic | 25.0% |
| !! | TTTTAATCATGTTTGATTCC+TGG | + | chr8_3:2018269-2018288 | Msa1268880:intron | 25.0% |
| !! | TCATTTTGGACAAGTTAAAT+AGG | - | chr8_3:2018351-2018370 | None:intergenic | 25.0% |
| !! | TAACTTGTCCAAAATGATAA+TGG | + | chr8_3:2018354-2018373 | Msa1268880:intron | 25.0% |
| ! | TGTGTGTGCTTTAATATATT+TGG | + | chr8_3:2018431-2018450 | Msa1268880:intron | 25.0% |
| ! | ATATCTTGATCTAAACTTAC+AGG | + | chr8_3:2018569-2018588 | Msa1268880:intron | 25.0% |
| TGTGATCATGAACGATAAAT+CGG | - | chr8_3:2015231-2015250 | None:intergenic | 30.0% | |
| TCCTATCTATAAACTCTTGA+AGG | + | chr8_3:2015300-2015319 | Msa1268880:CDS | 30.0% | |
| TCCTTCAAGAGTTTATAGAT+AGG | - | chr8_3:2015304-2015323 | None:intergenic | 30.0% | |
| TTTCTTGGGTCTTTGTTAAT+TGG | + | chr8_3:2015420-2015439 | Msa1268880:intron | 30.0% | |
| TTCTTGGGTCTTTGTTAATT+GGG | + | chr8_3:2015421-2015440 | Msa1268880:intron | 30.0% | |
| CTTAAAAAATTACATGGGTC+AGG | + | chr8_3:2015613-2015632 | Msa1268880:intron | 30.0% | |
| !! | ATTTGATTTGTGTTTGTGGT+TGG | + | chr8_3:2015653-2015672 | Msa1268880:intron | 30.0% |
| !!! | GTGTGTTTTTGTTTTGATGA+TGG | + | chr8_3:2015735-2015754 | Msa1268880:intron | 30.0% |
| ATGGTTATGAATGATGTAAC+AGG | + | chr8_3:2015754-2015773 | Msa1268880:intron | 30.0% | |
| TAAATTGAAGGCAAGTTACA+TGG | + | chr8_3:2015921-2015940 | Msa1268880:CDS | 30.0% | |
| TAGATATGGTACAAATGTCA+GGG | - | chr8_3:2016410-2016429 | None:intergenic | 30.0% | |
| TCTTAAAGAATAGACCTTTC+TGG | + | chr8_3:2016506-2016525 | Msa1268880:intron | 30.0% | |
| CTTAAAGAATAGACCTTTCT+GGG | + | chr8_3:2016507-2016526 | Msa1268880:intron | 30.0% | |
| TTAAAGAATAGACCTTTCTG+GGG | + | chr8_3:2016508-2016527 | Msa1268880:intron | 30.0% | |
| !!! | AGAATTTTTTTTTTGGGGAG+GGG | + | chr8_3:2016936-2016955 | Msa1268880:intron | 30.0% |
| CAGTATTACTTGAGAAGAAA+TGG | - | chr8_3:2017003-2017022 | None:intergenic | 30.0% | |
| TTCTCAAGTAATACTGCAAA+AGG | + | chr8_3:2017007-2017026 | Msa1268880:intron | 30.0% | |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | - | chr8_3:2017279-2017298 | None:intergenic | 30.0% |
| !! | AAACGACACTCATTTTGAAA+CGG | + | chr8_3:2017280-2017299 | Msa1268880:intron | 30.0% |
| !! | CTGAGGAAATTTCTGTTTTT+AGG | + | chr8_3:2017374-2017393 | Msa1268880:intron | 30.0% |
| TAGATCACTACAAATAGAAG+GGG | - | chr8_3:2017679-2017698 | None:intergenic | 30.0% | |
| CTAGATCACTACAAATAGAA+GGG | - | chr8_3:2017680-2017699 | None:intergenic | 30.0% | |
| !!! | TTACATGTCCGTTTTTTGTT+TGG | + | chr8_3:2017818-2017837 | Msa1268880:intron | 30.0% |
| GTAGTAAAATTGATGAATCG+AGG | + | chr8_3:2017853-2017872 | Msa1268880:intron | 30.0% | |
| ATGAATCGAGGAATGAAATT+TGG | + | chr8_3:2017865-2017884 | Msa1268880:intron | 30.0% | |
| TAAACGGGTAAAGGTTTATA+TGG | - | chr8_3:2017921-2017940 | None:intergenic | 30.0% | |
| GTTTCTTAATAGGAGTAAAC+GGG | - | chr8_3:2017936-2017955 | None:intergenic | 30.0% | |
| GGTTTCTTAATAGGAGTAAA+CGG | - | chr8_3:2017937-2017956 | None:intergenic | 30.0% | |
| ! | TAACTACTTGGTCTTCTTAT+AGG | + | chr8_3:2018001-2018020 | Msa1268880:intron | 30.0% |
| ! | AACTACTTGGTCTTCTTATA+GGG | + | chr8_3:2018002-2018021 | Msa1268880:intron | 30.0% |
| GATGAGACAAATATAAGAAC+TGG | - | chr8_3:2018113-2018132 | None:intergenic | 30.0% | |
| ATGTACCTGAATTAGATCTA+GGG | - | chr8_3:2018159-2018178 | None:intergenic | 30.0% | |
| TATGTACCTGAATTAGATCT+AGG | - | chr8_3:2018160-2018179 | None:intergenic | 30.0% | |
| ! | AAAAGGATCGGATTTGTTTA+AGG | + | chr8_3:2018295-2018314 | Msa1268880:intron | 30.0% |
| !! | AAGTTAAATAGGTTTTGGTC+TGG | - | chr8_3:2018340-2018359 | None:intergenic | 30.0% |
| ! | TGGACAAGTTAAATAGGTTT+TGG | - | chr8_3:2018345-2018364 | None:intergenic | 30.0% |
| ! | GAAATCGTCCATTATCATTT+TGG | - | chr8_3:2018365-2018384 | None:intergenic | 30.0% |
| !! | TTGGTTTTCAGCAATCAAAA+GGG | + | chr8_3:2018630-2018649 | Msa1268880:CDS | 30.0% |
| AAGAGCAATGCCAATCTAAA+GGG | - | chr8_3:2015596-2015615 | None:intergenic | 35.0% | |
| TAAGAGCAATGCCAATCTAA+AGG | - | chr8_3:2015597-2015616 | None:intergenic | 35.0% | |
| ATGGGTCAGGAAAAATTACA+TGG | + | chr8_3:2015626-2015645 | Msa1268880:intron | 35.0% | |
| TGGGTCAGGAAAAATTACAT+GGG | + | chr8_3:2015627-2015646 | Msa1268880:intron | 35.0% | |
| !!! | GCTGTATTGTAGTTTTGTCA+TGG | + | chr8_3:2015825-2015844 | Msa1268880:CDS | 35.0% |
| CATTCACACCATACTTGATT+TGG | + | chr8_3:2015855-2015874 | Msa1268880:CDS | 35.0% | |
| AAAAGTCGCCAAATCAAGTA+TGG | - | chr8_3:2015866-2015885 | None:intergenic | 35.0% | |
| AGATATGGTACAAATGTCAG+GGG | - | chr8_3:2016409-2016428 | None:intergenic | 35.0% | |
| CTAGATATGGTACAAATGTC+AGG | - | chr8_3:2016411-2016430 | None:intergenic | 35.0% | |
| GACATTTGTACCATATCTAG+AGG | + | chr8_3:2016411-2016430 | Msa1268880:intron | 35.0% | |
| TTTGTACCATATCTAGAGGT+CGG | + | chr8_3:2016415-2016434 | Msa1268880:intron | 35.0% | |
| CTATCTTTACGTATGCAGAA+GGG | - | chr8_3:2016465-2016484 | None:intergenic | 35.0% | |
| TCTATCTTTACGTATGCAGA+AGG | - | chr8_3:2016466-2016485 | None:intergenic | 35.0% | |
| TAAAGAATAGACCTTTCTGG+GGG | + | chr8_3:2016509-2016528 | Msa1268880:intron | 35.0% | |
| !! | TGTTTCTGGTACTTAGTCTA+AGG | - | chr8_3:2016748-2016767 | None:intergenic | 35.0% |
| AAGGGTAGTGAACAAAGTTA+AGG | + | chr8_3:2016777-2016796 | Msa1268880:intron | 35.0% | |
| CAAAGTTAAGGCTTGAAAGA+AGG | + | chr8_3:2016789-2016808 | Msa1268880:intron | 35.0% | |
| ! | AACCGACTCATCTTAATGAA+TGG | + | chr8_3:2016855-2016874 | Msa1268880:intron | 35.0% |
| ! | ACCGACTCATCTTAATGAAT+GGG | + | chr8_3:2016856-2016875 | Msa1268880:intron | 35.0% |
| ACCCATTCATTAAGATGAGT+CGG | - | chr8_3:2016860-2016879 | None:intergenic | 35.0% | |
| ACTCATCTTAATGAATGGGT+AGG | + | chr8_3:2016860-2016879 | Msa1268880:intron | 35.0% | |
| CTCATCTTAATGAATGGGTA+GGG | + | chr8_3:2016861-2016880 | Msa1268880:intron | 35.0% | |
| !!! | GAATTTTTTTTTTGGGGAGG+GGG | + | chr8_3:2016937-2016956 | Msa1268880:intron | 35.0% |
| !!! | AATTTTTTTTTTGGGGAGGG+GGG | + | chr8_3:2016938-2016957 | Msa1268880:intron | 35.0% |
| !! | AAGCGACACTCATTTTGAAA+CGG | - | chr8_3:2017055-2017074 | None:intergenic | 35.0% |
| ! | TGTGCAGAGTATTAATTGGA+GGG | - | chr8_3:2017145-2017164 | None:intergenic | 35.0% |
| ! | GTAGTGTGCAGAGTATTAAT+TGG | - | chr8_3:2017149-2017168 | None:intergenic | 35.0% |
| ! | ATACACGAATAATAGTGGAG+TGG | - | chr8_3:2017557-2017576 | None:intergenic | 35.0% |
| TCTTTCTCTCTCCTTAAGTT+GGG | - | chr8_3:2017609-2017628 | None:intergenic | 35.0% | |
| GCTAGATCACTACAAATAGA+AGG | - | chr8_3:2017681-2017700 | None:intergenic | 35.0% | |
| TTTGTAGTGATCTAGCTGAT+TGG | + | chr8_3:2017685-2017704 | Msa1268880:intron | 35.0% | |
| ! | ATATGAACTTCCAAAGGTAC+AGG | - | chr8_3:2017759-2017778 | None:intergenic | 35.0% |
| TAATAGGAGTAAACGGGTAA+AGG | - | chr8_3:2017930-2017949 | None:intergenic | 35.0% | |
| TCACTTAGGGGTTTCTTAAT+AGG | - | chr8_3:2017946-2017965 | None:intergenic | 35.0% | |
| ! | AATATAAGAACTGGTTTCGC+AGG | - | chr8_3:2018104-2018123 | None:intergenic | 35.0% |
| ! | GTACATACCCAATCTCTTTT+GGG | + | chr8_3:2018173-2018192 | Msa1268880:intron | 35.0% |
| TGTTTGATTCCTGGACTAAA+AGG | + | chr8_3:2018278-2018297 | Msa1268880:intron | 35.0% | |
| ! | ATCGGATTTGTTTAAGGTAG+TGG | + | chr8_3:2018301-2018320 | Msa1268880:intron | 35.0% |
| CTAAACTTACAGGAAGAAAC+AGG | + | chr8_3:2018579-2018598 | Msa1268880:intron | 35.0% | |
| !!! | GTTGGTTTTCAGCAATCAAA+AGG | + | chr8_3:2018629-2018648 | Msa1268880:CDS | 35.0% |
| AGAAAATCCTTGACCTTTGG+TGG | - | chr8_3:2015172-2015191 | None:intergenic | 40.0% | |
| GATCATGAACGATAAATCGG+AGG | - | chr8_3:2015228-2015247 | None:intergenic | 40.0% | |
| TGGGTCTTTGTTAATTGGGT+AGG | + | chr8_3:2015425-2015444 | Msa1268880:intron | 40.0% | |
| AGGATTATCACTCAAATCCC+AGG | + | chr8_3:2015774-2015793 | Msa1268880:intron | 40.0% | |
| TGTATACTACCATTGCACAC+AGG | - | chr8_3:2016167-2016186 | None:intergenic | 40.0% | |
| ATGGATCTACAAAGTCATCG+AGG | - | chr8_3:2016291-2016310 | None:intergenic | 40.0% | |
| AGGGAAATTGTGAAGGTCTA+TGG | - | chr8_3:2016310-2016329 | None:intergenic | 40.0% | |
| AAGTTTAGCACTATGGCTCA+GGG | - | chr8_3:2016329-2016348 | None:intergenic | 40.0% | |
| AGAAGCCAAGTTTAGCACTA+TGG | - | chr8_3:2016336-2016355 | None:intergenic | 40.0% | |
| CAAATGTCAGGGGAAATCTT+GGG | - | chr8_3:2016399-2016418 | None:intergenic | 40.0% | |
| ACAAATGTCAGGGGAAATCT+TGG | - | chr8_3:2016400-2016419 | None:intergenic | 40.0% | |
| AGAATACCGACCTCTAGATA+TGG | - | chr8_3:2016424-2016443 | None:intergenic | 40.0% | |
| AAAGAATAGACCTTTCTGGG+GGG | + | chr8_3:2016510-2016529 | Msa1268880:intron | 40.0% | |
| AGAGTGCGTAAATTGAGTCA+CGG | + | chr8_3:2016580-2016599 | Msa1268880:intron | 40.0% | |
| GTACTTAGTCTAAGGATACG+TGG | - | chr8_3:2016740-2016759 | None:intergenic | 40.0% | |
| GTAGGGACATTATCATCTAC+CGG | + | chr8_3:2016878-2016897 | Msa1268880:intron | 40.0% | |
| !!! | ATTTTTTTTTTGGGGAGGGG+GGG | + | chr8_3:2016939-2016958 | Msa1268880:intron | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | chr8_3:2017284-2017303 | None:intergenic | 40.0% |
| ! | GTGTGCAGAGTATTAATTGG+AGG | - | chr8_3:2017146-2017165 | None:intergenic | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr8_3:2017284-2017303 | Msa1268880:intron | 40.0% |
| ! | ATAGTGGAGTGGAGAAGATA+TGG | - | chr8_3:2017546-2017565 | None:intergenic | 40.0% |
| CTCTTTCTCTCTCCTTAAGT+TGG | - | chr8_3:2017610-2017629 | None:intergenic | 40.0% | |
| ! | AGTGATCTAGCTGATTGGTT+AGG | + | chr8_3:2017690-2017709 | Msa1268880:intron | 40.0% |
| TCAATTTCAAGCCAAGTGTG+AGG | + | chr8_3:2017733-2017752 | Msa1268880:CDS | 40.0% | |
| ! | ACCTTTGGAAGTTCATATCC+AGG | + | chr8_3:2017761-2017780 | Msa1268880:CDS | 40.0% |
| AAACAACATATCCACTTGCC+TGG | - | chr8_3:2017782-2017801 | None:intergenic | 40.0% | |
| TCAAGACTACGCATCACTTA+GGG | - | chr8_3:2017959-2017978 | None:intergenic | 40.0% | |
| TTCAAGACTACGCATCACTT+AGG | - | chr8_3:2017960-2017979 | None:intergenic | 40.0% | |
| GTCTTCTTATAGGGATATCC+TGG | + | chr8_3:2018011-2018030 | Msa1268880:intron | 40.0% | |
| TATTCACACTGTTCATCCGT+GGG | - | chr8_3:2018049-2018068 | None:intergenic | 40.0% | |
| TTATTCACACTGTTCATCCG+TGG | - | chr8_3:2018050-2018069 | None:intergenic | 40.0% | |
| TACTGCCCTAGATCTAATTC+AGG | + | chr8_3:2018151-2018170 | Msa1268880:CDS | 40.0% | |
| ! | GGTACATACCCAATCTCTTT+TGG | + | chr8_3:2018172-2018191 | Msa1268880:intron | 40.0% |
| GATTCCTGGACTAAAAGGAT+CGG | + | chr8_3:2018283-2018302 | Msa1268880:intron | 40.0% | |
| ! | AAATCCGATCCTTTTAGTCC+AGG | - | chr8_3:2018290-2018309 | None:intergenic | 40.0% |
| ! | GGATTTGTTTAAGGTAGTGG+AGG | + | chr8_3:2018304-2018323 | Msa1268880:intron | 40.0% |
| !! | TTTAAGGTAGTGGAGGCTAA+TGG | + | chr8_3:2018311-2018330 | Msa1268880:intron | 40.0% |
| CTTCATGTTGTGCACTAAGT+TGG | + | chr8_3:2018384-2018403 | Msa1268880:intron | 40.0% | |
| ! | TGTGCACTAAGTTGGAGATT+TGG | + | chr8_3:2018392-2018411 | Msa1268880:intron | 40.0% |
| TAAAGCACACACACACTTCA+TGG | - | chr8_3:2018424-2018443 | None:intergenic | 40.0% | |
| GCGAGAAAATCCTTGACCTT+TGG | - | chr8_3:2015175-2015194 | None:intergenic | 45.0% | |
| !! | GATTTTCTCGCCGTTGTTTC+CGG | + | chr8_3:2015184-2015203 | Msa1268880:CDS | 45.0% |
| AAATCGGAGGAGAACAAGAG+CGG | - | chr8_3:2015215-2015234 | None:intergenic | 45.0% | |
| TTGAAGGAGAAGACTTGTGC+TGG | + | chr8_3:2015316-2015335 | Msa1268880:CDS | 45.0% | |
| CATGTATATAACCCACACCG+TGG | - | chr8_3:2015893-2015912 | None:intergenic | 45.0% | |
| GGCAAGTTACATGGAAGAGA+AGG | + | chr8_3:2015930-2015949 | Msa1268880:CDS | 45.0% | |
| ATGGCTCAGGGAAATTGTGA+AGG | - | chr8_3:2016317-2016336 | None:intergenic | 45.0% | |
| CAAGTTTAGCACTATGGCTC+AGG | - | chr8_3:2016330-2016349 | None:intergenic | 45.0% | |
| CTGAGCCATAGTGCTAAACT+TGG | + | chr8_3:2016328-2016347 | Msa1268880:intron | 45.0% | |
| GAGAAGAAGCAAGGAGTTGT+AGG | - | chr8_3:2016371-2016390 | None:intergenic | 45.0% | |
| ! | AAGAATAGACCTTTCTGGGG+GGG | + | chr8_3:2016511-2016530 | Msa1268880:intron | 45.0% |
| CTGATTGAGATGGCAATGTC+AGG | + | chr8_3:2016605-2016624 | Msa1268880:intron | 45.0% | |
| GGACATTATCATCTACCGGT+GGG | + | chr8_3:2016882-2016901 | Msa1268880:intron | 45.0% | |
| TCATCTACCGGTGGGATATT+TGG | + | chr8_3:2016890-2016909 | Msa1268880:intron | 45.0% | |
| CTGTTGTCCAAATATCCCAC+CGG | - | chr8_3:2016900-2016919 | None:intergenic | 45.0% | |
| ! | TTTGAAACGGAGGGAGTAGT+AGG | - | chr8_3:2017042-2017061 | None:intergenic | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | - | chr8_3:2017283-2017302 | None:intergenic | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr8_3:2017283-2017302 | Msa1268880:intron | 45.0% |
| GCTGTTTGAATGCTCAACTG+AGG | + | chr8_3:2017357-2017376 | Msa1268880:intron | 45.0% | |
| CATTTGCCAGAGCTGTAGAA+AGG | - | chr8_3:2017461-2017480 | None:intergenic | 45.0% | |
| CTCTAGACTCTCCCAACTTA+AGG | + | chr8_3:2017595-2017614 | Msa1268880:intron | 45.0% | |
| GCCTGGATATGAACTTCCAA+AGG | - | chr8_3:2017765-2017784 | None:intergenic | 45.0% | |
| GAAGTTCATATCCAGGCAAG+TGG | + | chr8_3:2017768-2017787 | Msa1268880:CDS | 45.0% | |
| CAAGACTACGCATCACTTAG+GGG | - | chr8_3:2017958-2017977 | None:intergenic | 45.0% | |
| !! | CTGGAAAGTATTACTGCCCA+CGG | + | chr8_3:2018030-2018049 | Msa1268880:CDS | 45.0% |
| GTGCATATTGCAGCATATGC+TGG | - | chr8_3:2018074-2018093 | None:intergenic | 45.0% | |
| !! | CTAGGGCAGTAAGTCTTGTT+TGG | - | chr8_3:2018142-2018161 | None:intergenic | 45.0% |
| TGCTACTGAGATGCGAAAGA+AGG | + | chr8_3:2018604-2018623 | Msa1268880:CDS | 45.0% | |
| GCTACTGAGATGCGAAAGAA+GGG | + | chr8_3:2018605-2018624 | Msa1268880:CDS | 45.0% | |
| !! | CATATATATATATATATATT+TGG | + | chr8_3:2018483-2018502 | Msa1268880:intron | 5.0% |
| ATGGCGTGGATCGATGTTCT+CGG | - | chr8_3:2015127-2015146 | None:intergenic | 50.0% | |
| ! | TTTGGCGACTTTTGCGACCA+CGG | + | chr8_3:2015873-2015892 | Msa1268880:CDS | 50.0% |
| GACATGTCACCTGTGTGCAA+TGG | + | chr8_3:2016155-2016174 | Msa1268880:intron | 50.0% | |
| TCATCGAGGATGAGAAGACG+AGG | - | chr8_3:2016277-2016296 | None:intergenic | 50.0% | |
| TGGGACATGGAGAAGAAGCA+AGG | - | chr8_3:2016380-2016399 | None:intergenic | 50.0% | |
| TCAGGGGAAATCTTGGGACA+TGG | - | chr8_3:2016393-2016412 | None:intergenic | 50.0% | |
| GGTCGGTATTCTGTCTACGA+TGG | + | chr8_3:2016432-2016451 | Msa1268880:intron | 50.0% | |
| TACGCACTCTCAACGTCATG+AGG | - | chr8_3:2016570-2016589 | None:intergenic | 50.0% | |
| !! | AGTCACGGCACTGATTGAGA+TGG | + | chr8_3:2016595-2016614 | Msa1268880:intron | 50.0% |
| GATACTTCAACCCCGATGCT+AGG | + | chr8_3:2016678-2016697 | Msa1268880:intron | 50.0% | |
| ATGGAGCTCTTGCCTAGCAT+CGG | - | chr8_3:2016693-2016712 | None:intergenic | 50.0% | |
| GGGACATTATCATCTACCGG+TGG | + | chr8_3:2016881-2016900 | Msa1268880:intron | 50.0% | |
| CACAAACTGAGCGTCCAGTA+CGG | + | chr8_3:2017427-2017446 | Msa1268880:CDS | 50.0% | |
| GAAAGGCCAACAAACCGTAC+TGG | - | chr8_3:2017444-2017463 | None:intergenic | 50.0% | |
| !! | TGTTGGCCTTTCTACAGCTC+TGG | + | chr8_3:2017452-2017471 | Msa1268880:CDS | 50.0% |
| ! | TCTACAGCTCTGGCAAATGC+TGG | + | chr8_3:2017462-2017481 | Msa1268880:CDS | 50.0% |
| ! | CTACAGCTCTGGCAAATGCT+GGG | + | chr8_3:2017463-2017482 | Msa1268880:CDS | 50.0% |
| TTGGGAGAGTCTAGAGAGTG+CGG | - | chr8_3:2017591-2017610 | None:intergenic | 50.0% | |
| ! | TCTAGCTGATTGGTTAGGCG+TGG | + | chr8_3:2017695-2017714 | Msa1268880:CDS | 50.0% |
| ! | AAAGGTACAGGCCTCACACT+TGG | - | chr8_3:2017747-2017766 | None:intergenic | 50.0% |
| AAGTGTGAGGCCTGTACCTT+TGG | + | chr8_3:2017746-2017765 | Msa1268880:CDS | 50.0% | |
| CGTGGGCAGTAATACTTTCC+AGG | - | chr8_3:2018032-2018051 | None:intergenic | 50.0% | |
| GAGATGCGAAAGAAGGGAGT+TGG | + | chr8_3:2018611-2018630 | Msa1268880:CDS | 50.0% | |
| GATCCACGCCATCTCCACAT+GGG | + | chr8_3:2015135-2015154 | Msa1268880:CDS | 55.0% | |
| GCGACAACCACCAAAGGTCA+AGG | + | chr8_3:2015162-2015181 | Msa1268880:CDS | 55.0% | |
| ! | TCTCGCCGTTGTTTCCGGTA+TGG | + | chr8_3:2015189-2015208 | Msa1268880:CDS | 55.0% |
| AGCGGCCATACCGGAAACAA+CGG | - | chr8_3:2015197-2015216 | None:intergenic | 55.0% | |
| GAGAACAAGAGCGGCCATAC+CGG | - | chr8_3:2015206-2015225 | None:intergenic | 55.0% | |
| GCTGAAGCTGTTCACTCGCT+TGG | + | chr8_3:2015268-2015287 | Msa1268880:CDS | 55.0% | |
| ! | GACTTTTGCGACCACGGTGT+GGG | + | chr8_3:2015879-2015898 | Msa1268880:CDS | 55.0% |
| GAGAAGACGAGGCTCACTGA+AGG | - | chr8_3:2016266-2016285 | None:intergenic | 55.0% | |
| ! | AATAGACCTTTCTGGGGGGG+TGG | + | chr8_3:2016514-2016533 | Msa1268880:intron | 55.0% |
| TGGAGCTCTTGCCTAGCATC+GGG | - | chr8_3:2016692-2016711 | None:intergenic | 55.0% | |
| GAGCGTCCAGTACGGTTTGT+TGG | + | chr8_3:2017435-2017454 | Msa1268880:CDS | 55.0% | |
| ! | AGCTGATTGGTTAGGCGTGG+AGG | + | chr8_3:2017698-2017717 | Msa1268880:CDS | 55.0% |
| TGGTTAGGCGTGGAGGAGAT+CGG | + | chr8_3:2017705-2017724 | Msa1268880:CDS | 55.0% | |
| GCGTGGATCGATGTTCTCGG+AGG | - | chr8_3:2015124-2015143 | None:intergenic | 60.0% | |
| CGATCCACGCCATCTCCACA+TGG | + | chr8_3:2015134-2015153 | Msa1268880:CDS | 60.0% | |
| TGACCCATGTGGAGATGGCG+TGG | - | chr8_3:2015141-2015160 | None:intergenic | 60.0% | |
| ACGCCATCTCCACATGGGTC+AGG | + | chr8_3:2015140-2015159 | Msa1268880:CDS | 60.0% | |
| TCGCCTGACCCATGTGGAGA+TGG | - | chr8_3:2015146-2015165 | None:intergenic | 60.0% | |
| TGGTTGTCGCCTGACCCATG+TGG | - | chr8_3:2015152-2015171 | None:intergenic | 60.0% | |
| GGTCAGGCGACAACCACCAA+AGG | + | chr8_3:2015156-2015175 | Msa1268880:CDS | 60.0% | |
| ! | CGACTTTTGCGACCACGGTG+TGG | + | chr8_3:2015878-2015897 | Msa1268880:CDS | 60.0% |
| GGAGCTCTTGCCTAGCATCG+GGG | - | chr8_3:2016691-2016710 | None:intergenic | 60.0% | |
| GGGAGGGGGGGTCTCTTAAT+AGG | + | chr8_3:2016951-2016970 | Msa1268880:intron | 60.0% | |
| TGATGGCCACCCCCCCAGAA+AGG | - | chr8_3:2016523-2016542 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 2015115 | 2018671 | 2015115 | ID=Msa1268880;Name=Msa1268880 |
| chr8_3 | mRNA | 2015115 | 2018671 | 2015115 | ID=Msa1268880-mRNA-1;Parent=Msa1268880;Name=Msa1268880-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|0.2|0|0.33|0.8|0.83|6|0|299 |
| chr8_3 | exon | 2015115 | 2015337 | 2015115 | ID=Msa1268880-mRNA-1:exon:601;Parent=Msa1268880-mRNA-1 |
| chr8_3 | exon | 2015776 | 2016043 | 2015776 | ID=Msa1268880-mRNA-1:exon:602;Parent=Msa1268880-mRNA-1 |
| chr8_3 | exon | 2017410 | 2017484 | 2017410 | ID=Msa1268880-mRNA-1:exon:603;Parent=Msa1268880-mRNA-1 |
| chr8_3 | exon | 2017692 | 2017794 | 2017692 | ID=Msa1268880-mRNA-1:exon:604;Parent=Msa1268880-mRNA-1 |
| chr8_3 | exon | 2018023 | 2018172 | 2018023 | ID=Msa1268880-mRNA-1:exon:605;Parent=Msa1268880-mRNA-1 |
| chr8_3 | exon | 2018591 | 2018671 | 2018591 | ID=Msa1268880-mRNA-1:exon:606;Parent=Msa1268880-mRNA-1 |
| chr8_3 | CDS | 2015115 | 2015337 | 2015115 | ID=Msa1268880-mRNA-1:cds;Parent=Msa1268880-mRNA-1 |
| chr8_3 | CDS | 2015776 | 2016043 | 2015776 | ID=Msa1268880-mRNA-1:cds;Parent=Msa1268880-mRNA-1 |
| chr8_3 | CDS | 2017410 | 2017484 | 2017410 | ID=Msa1268880-mRNA-1:cds;Parent=Msa1268880-mRNA-1 |
| chr8_3 | CDS | 2017692 | 2017794 | 2017692 | ID=Msa1268880-mRNA-1:cds;Parent=Msa1268880-mRNA-1 |
| chr8_3 | CDS | 2018023 | 2018172 | 2018023 | ID=Msa1268880-mRNA-1:cds;Parent=Msa1268880-mRNA-1 |
| chr8_3 | CDS | 2018591 | 2018671 | 2018591 | ID=Msa1268880-mRNA-1:cds;Parent=Msa1268880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
