Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0726650 | XP_003614002.1 | 87.432 | 366 | 13 | 3 | 1 | 366 | 1 | 333 | 0.0 | 634 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0726650 | sp|Q9LLY4|LPAT1_BRANA | 53.203 | 359 | 114 | 6 | 30 | 364 | 13 | 341 | 8.46e-127 | 370 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0726650 | G7JXV9 | 87.432 | 366 | 13 | 3 | 1 | 366 | 1 | 333 | 0.0 | 634 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005690 | Msa0726650 | 0.816678 | 4.886680e-52 | -8.615850e-47 |
| Msa0021710 | Msa0726650 | 0.805112 | 1.562431e-49 | -8.615850e-47 |
| Msa0022960 | Msa0726650 | 0.811309 | 7.466586e-51 | -8.615850e-47 |
| Msa0030400 | Msa0726650 | 0.801342 | 9.420630e-49 | -8.615850e-47 |
| Msa0030740 | Msa0726650 | 0.808495 | 3.011727e-50 | -8.615850e-47 |
| Msa0045660 | Msa0726650 | 0.802132 | 6.486592e-49 | -8.615850e-47 |
| Msa0046360 | Msa0726650 | 0.802392 | 5.732596e-49 | -8.615850e-47 |
| Msa0046670 | Msa0726650 | 0.801575 | 8.439919e-49 | -8.615850e-47 |
| Msa0050360 | Msa0726650 | 0.816738 | 4.737405e-52 | -8.615850e-47 |
| Msa0052550 | Msa0726650 | 0.814299 | 1.653251e-51 | -8.615850e-47 |
| Msa0056130 | Msa0726650 | 0.818458 | 1.939689e-52 | -8.615850e-47 |
| Msa0056160 | Msa0726650 | 0.811178 | 7.970503e-51 | -8.615850e-47 |
| Msa0062750 | Msa0726650 | 0.801147 | 1.032584e-48 | -8.615850e-47 |
| Msa0065690 | Msa0726650 | 0.830516 | 2.810280e-55 | -8.615850e-47 |
| Msa0072910 | Msa0726650 | 0.801175 | 1.019247e-48 | -8.615850e-47 |
| Msa0090760 | Msa0726650 | 0.817144 | 3.839205e-52 | -8.615850e-47 |
| Msa0091550 | Msa0726650 | 0.806146 | 9.479327e-50 | -8.615850e-47 |
| Msa0092750 | Msa0726650 | 0.800983 | 1.115588e-48 | -8.615850e-47 |
| Msa0096510 | Msa0726650 | 0.815250 | 1.018081e-51 | -8.615850e-47 |
| Msa0612730 | Msa0726650 | 0.817190 | 3.750134e-52 | -8.615850e-47 |
| Msa0635350 | Msa0726650 | 0.807599 | 4.672416e-50 | -8.615850e-47 |
| Msa0645820 | Msa0726650 | 0.801953 | 7.060924e-49 | -8.615850e-47 |
| Msa0659130 | Msa0726650 | 0.803634 | 3.173926e-49 | -8.615850e-47 |
| Msa0672350 | Msa0726650 | 0.808360 | 3.218257e-50 | -8.615850e-47 |
| Msa0688760 | Msa0726650 | 0.804363 | 2.239423e-49 | -8.615850e-47 |
| Msa0698860 | Msa0726650 | 0.818403 | 1.996346e-52 | -8.615850e-47 |
| Msa0702070 | Msa0726650 | 0.811434 | 7.014123e-51 | -8.615850e-47 |
| Msa0702120 | Msa0726650 | 0.823946 | 1.052973e-53 | -8.615850e-47 |
| Msa0705610 | Msa0726650 | 0.809816 | 1.569697e-50 | -8.615850e-47 |
| Msa0710950 | Msa0726650 | 0.816445 | 5.508694e-52 | -8.615850e-47 |
| Msa0712670 | Msa0726650 | 0.801607 | 8.315038e-49 | -8.615850e-47 |
| Msa0726000 | Msa0726650 | 0.804243 | 2.371799e-49 | -8.615850e-47 |
| Msa0726640 | Msa0726650 | 0.811538 | 6.660104e-51 | -8.615850e-47 |
| Msa0726650 | Msa0761930 | 0.806098 | 9.701776e-50 | -8.615850e-47 |
| Msa0726650 | Msa0789800 | 0.808729 | 2.684442e-50 | -8.615850e-47 |
| Msa0726650 | Msa0840450 | 0.806453 | 8.166318e-50 | -8.615850e-47 |
| Msa0726650 | Msa0880310 | 0.824888 | 6.324454e-54 | -8.615850e-47 |
| Msa0726650 | Msa0906150 | 0.814593 | 1.423888e-51 | -8.615850e-47 |
| Msa0726650 | Msa0926090 | 0.821754 | 3.412477e-53 | -8.615850e-47 |
| Msa0726650 | Msa0938370 | 0.801167 | 1.023004e-48 | -8.615850e-47 |
| Msa0726650 | Msa0967940 | 0.810214 | 1.288645e-50 | -8.615850e-47 |
| Msa0726650 | Msa0970120 | 0.814631 | 1.395987e-51 | -8.615850e-47 |
| Msa0726650 | Msa1028720 | 0.801134 | 1.038979e-48 | -8.615850e-47 |
| Msa0726650 | Msa1030440 | 0.808250 | 3.396241e-50 | -8.615850e-47 |
| Msa0726650 | Msa1055490 | 0.828356 | 9.407544e-55 | -8.615850e-47 |
| Msa0726650 | Msa1056520 | 0.822443 | 2.362450e-53 | -8.615850e-47 |
| Msa0726650 | Msa1067430 | 0.806468 | 8.106601e-50 | -8.615850e-47 |
| Msa0726650 | Msa1068880 | 0.803367 | 3.605980e-49 | -8.615850e-47 |
| Msa0726650 | Msa1069450 | 0.824184 | 9.263238e-54 | -8.615850e-47 |
| Msa0726650 | Msa1083140 | 0.802269 | 6.078103e-49 | -8.615850e-47 |
| Msa0726650 | Msa1106830 | 0.805392 | 1.364645e-49 | -8.615850e-47 |
| Msa0726650 | Msa1130070 | 0.809334 | 1.991506e-50 | -8.615850e-47 |
| Msa0726650 | Msa1130650 | 0.808846 | 2.534029e-50 | -8.615850e-47 |
| Msa0726650 | Msa1130660 | 0.824551 | 7.590653e-54 | -8.615850e-47 |
| Msa0726650 | Msa1130730 | 0.847869 | 8.801148e-60 | -8.615850e-47 |
| Msa0726650 | Msa1156270 | 0.801360 | 9.339867e-49 | -8.615850e-47 |
| Msa0726650 | Msa1193680 | 0.823856 | 1.105587e-53 | -8.615850e-47 |
| Msa0726650 | Msa1196990 | 0.809761 | 1.612411e-50 | -8.615850e-47 |
| Msa0726650 | Msa1223600 | 0.820562 | 6.425148e-53 | -8.615850e-47 |
| Msa0726650 | Msa1254990 | 0.803467 | 3.438427e-49 | -8.615850e-47 |
| Msa0726650 | Msa1258100 | 0.801152 | 1.030387e-48 | -8.615850e-47 |
| Msa0726650 | Msa1277830 | 0.816374 | 5.716304e-52 | -8.615850e-47 |
| Msa0726650 | Msa1277930 | 0.807893 | 4.047162e-50 | -8.615850e-47 |
| Msa0726650 | Msa1279340 | 0.865624 | 5.161441e-65 | -8.615850e-47 |
| Msa0726650 | Msa1300880 | 0.806347 | 8.595935e-50 | -8.615850e-47 |
| Msa0726650 | Msa1316720 | 0.803487 | 3.405515e-49 | -8.615850e-47 |
| Msa0726650 | Msa1318180 | 0.800954 | 1.130895e-48 | -8.615850e-47 |
| Msa0726650 | Msa1319520 | 0.814869 | 1.236665e-51 | -8.615850e-47 |
| Msa0726650 | Msa1331900 | 0.803076 | 4.143136e-49 | -8.615850e-47 |
| Msa0726650 | Msa1353270 | 0.816332 | 5.840615e-52 | -8.615850e-47 |
| Msa0726650 | Msa1364650 | 0.801166 | 1.023361e-48 | -8.615850e-47 |
| Msa0726650 | Msa1380720 | 0.800690 | 1.280618e-48 | -8.615850e-47 |
| Msa0726650 | Msa1392680 | 0.814531 | 1.469262e-51 | -8.615850e-47 |
| Msa0726650 | Msa1414280 | 0.800800 | 1.216077e-48 | -8.615850e-47 |
| Msa0726650 | Msa1415250 | 0.808235 | 3.421523e-50 | -8.615850e-47 |
| Msa0726650 | Msa1422500 | 0.825770 | 3.910018e-54 | -8.615850e-47 |
| Msa0726650 | Msa1430940 | 0.812078 | 5.081080e-51 | -8.615850e-47 |
| Msa0726650 | Msa1431240 | 0.816884 | 4.392191e-52 | -8.615850e-47 |
| Msa0726650 | Msa1432350 | 0.802103 | 6.574807e-49 | -8.615850e-47 |
| Msa0726650 | Msa1438780 | 0.802476 | 5.510916e-49 | -8.615850e-47 |
| Msa0726650 | Msa1449510 | 0.823034 | 1.721144e-53 | -8.615850e-47 |
| Msa0726650 | Msa1464800 | 0.800159 | 1.642547e-48 | -8.615850e-47 |
| Msa0127080 | Msa0726650 | 0.816367 | 5.735221e-52 | -8.615850e-47 |
| Msa0131390 | Msa0726650 | 0.814383 | 1.584060e-51 | -8.615850e-47 |
| Msa0147800 | Msa0726650 | 0.802065 | 6.694827e-49 | -8.615850e-47 |
| Msa0153640 | Msa0726650 | 0.803424 | 3.510179e-49 | -8.615850e-47 |
| Msa0173850 | Msa0726650 | 0.804244 | 2.370985e-49 | -8.615850e-47 |
| Msa0177490 | Msa0726650 | 0.809673 | 1.684555e-50 | -8.615850e-47 |
| Msa0181020 | Msa0726650 | 0.801860 | 7.376687e-49 | -8.615850e-47 |
| Msa0193000 | Msa0726650 | 0.807707 | 4.431029e-50 | -8.615850e-47 |
| Msa0213020 | Msa0726650 | 0.816891 | 4.376313e-52 | -8.615850e-47 |
| Msa0214730 | Msa0726650 | 0.800211 | 1.602957e-48 | -8.615850e-47 |
| Msa0226800 | Msa0726650 | 0.833253 | 5.930620e-56 | -8.615850e-47 |
| Msa0378570 | Msa0726650 | 0.811469 | 6.894141e-51 | -8.615850e-47 |
| Msa0385620 | Msa0726650 | 0.830211 | 3.336150e-55 | -8.615850e-47 |
| Msa0441180 | Msa0726650 | 0.800998 | 1.108022e-48 | -8.615850e-47 |
| Msa0243160 | Msa0726650 | 0.814828 | 1.262562e-51 | -8.615850e-47 |
| Msa0256070 | Msa0726650 | 0.813340 | 2.690146e-51 | -8.615850e-47 |
| Msa0256120 | Msa0726650 | 0.813223 | 2.854287e-51 | -8.615850e-47 |
| Msa0258380 | Msa0726650 | 0.841448 | 4.722377e-58 | -8.615850e-47 |
| Msa0258410 | Msa0726650 | 0.845975 | 2.904105e-59 | -8.615850e-47 |
| Msa0280120 | Msa0726650 | 0.814490 | 1.500701e-51 | -8.615850e-47 |
| Msa0288360 | Msa0726650 | 0.811840 | 5.724213e-51 | -8.615850e-47 |
| Msa0304870 | Msa0726650 | 0.810275 | 1.249641e-50 | -8.615850e-47 |
| Msa0307750 | Msa0726650 | 0.803872 | 2.832713e-49 | -8.615850e-47 |
| Msa0321230 | Msa0726650 | 0.818790 | 1.630894e-52 | -8.615850e-47 |
| Msa0327900 | Msa0726650 | 0.815180 | 1.054980e-51 | -8.615850e-47 |
| Msa0334780 | Msa0726650 | 0.817395 | 3.371732e-52 | -8.615850e-47 |
| Msa0335740 | Msa0726650 | 0.841179 | 5.559999e-58 | -8.615850e-47 |
| Msa0335860 | Msa0726650 | 0.831191 | 1.920220e-55 | -8.615850e-47 |
| Msa0341260 | Msa0726650 | 0.810081 | 1.375929e-50 | -8.615850e-47 |
| Msa0352200 | Msa0726650 | 0.817558 | 3.097904e-52 | -8.615850e-47 |
| Msa0354490 | Msa0726650 | 0.810288 | 1.241835e-50 | -8.615850e-47 |
| Msa0484890 | Msa0726650 | 0.820680 | 6.034545e-53 | -8.615850e-47 |
| Msa0485350 | Msa0726650 | 0.800271 | 1.558647e-48 | -8.615850e-47 |
| Msa0488900 | Msa0726650 | 0.805262 | 1.452914e-49 | -8.615850e-47 |
| Msa0489620 | Msa0726650 | 0.811561 | 6.584036e-51 | -8.615850e-47 |
| Msa0500510 | Msa0726650 | 0.801498 | 8.751220e-49 | -8.615850e-47 |
| Msa0524510 | Msa0726650 | 0.814348 | 1.612442e-51 | -8.615850e-47 |
| Msa0528170 | Msa0726650 | 0.804784 | 1.829691e-49 | -8.615850e-47 |
| Msa0572820 | Msa0726650 | 0.807074 | 6.037223e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0726650 | MtrunA17_Chr5g0418531 | 87.432 | 366 | 13 | 3 | 1 | 366 | 1 | 333 | 0.0 | 634 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0726650 | AT4G30580.1 | 60.410 | 293 | 84 | 2 | 73 | 363 | 92 | 354 | 2.86e-126 | 367 |
Find 131 sgRNAs with CRISPR-Local
Find 255 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACACATTTCTTTGCTTATTT+TGG | 0.064584 | 5_1:+27929386 | None:intergenic |
| TCCCTTCCTGCTGGCATGAT+TGG | 0.116245 | 5_1:+27927501 | None:intergenic |
| TCCACACAAGTCGTTGAATT+TGG | 0.150006 | 5_1:+27929345 | None:intergenic |
| CTTAATTGCCTCTTCTTCTA+TGG | 0.199821 | 5_1:+27929962 | None:intergenic |
| ATTATTTCGTCGCCAAACTA+TGG | 0.237348 | 5_1:-27929072 | Msa0726650:CDS |
| AGGTACTAATTGTCCTTAAC+TGG | 0.242292 | 5_1:+27927260 | None:intergenic |
| CCCAACCAATTATCGGAAAA+AGG | 0.254352 | 5_1:+27928879 | None:intergenic |
| TGTTCCGCGTAATCCAATTC+TGG | 0.255579 | 5_1:+27929807 | None:intergenic |
| GTTGTACCAATCACCCTTAT+TGG | 0.257776 | 5_1:-27927531 | Msa0726650:CDS |
| CCCTTCCTGCTGGCATGATT+GGG | 0.266985 | 5_1:+27927502 | None:intergenic |
| TGAAACAATTGCAGAATAAA+AGG | 0.278366 | 5_1:+27929897 | None:intergenic |
| CGTACTAAAGATGGAAAATT+AGG | 0.280561 | 5_1:-27928644 | Msa0726650:CDS |
| CCTTATACCTTGAAATGAAT+TGG | 0.284178 | 5_1:-27927307 | Msa0726650:intron |
| ACATAGACGGCGGGAGTATC+TGG | 0.286390 | 5_1:+27928986 | None:intergenic |
| TATCATCCATTTCTAACATT+TGG | 0.288500 | 5_1:+27926780 | None:intergenic |
| CTATGAGTTTGCAGCTCTTC+AGG | 0.294414 | 5_1:-27926995 | Msa0726650:three_prime_UTR |
| TCATTCTTTGTCAGTCATAT+TGG | 0.297175 | 5_1:-27926956 | Msa0726650:three_prime_UTR |
| TGGTTGGGCAATGTTTCTTT+TGG | 0.301779 | 5_1:-27928864 | Msa0726650:CDS |
| ACATTGTTCGTTTAGTACTA+TGG | 0.307985 | 5_1:-27926926 | Msa0726650:three_prime_UTR |
| GGTTAGTTGGATTGTATCTA+TGG | 0.311817 | 5_1:+27929934 | None:intergenic |
| CCACACAAGTCGTTGAATTT+GGG | 0.325398 | 5_1:+27929346 | None:intergenic |
| ATGATAAATCAGCCTGTTTA+CGG | 0.336770 | 5_1:-27926620 | Msa0726650:three_prime_UTR |
| TGATTGGGCCAGTTCCAATA+AGG | 0.339469 | 5_1:+27927517 | None:intergenic |
| AATGAATTGGAAGGGTAAAA+TGG | 0.347427 | 5_1:-27927294 | Msa0726650:three_prime_UTR |
| TGGGAATGTGCAAACTAAAA+TGG | 0.354941 | 5_1:-27926807 | Msa0726650:three_prime_UTR |
| ATTTAAAGACAGGATAAAAC+TGG | 0.359279 | 5_1:+27930008 | None:intergenic |
| AACATTGCCCAACCAATTAT+CGG | 0.364019 | 5_1:+27928872 | None:intergenic |
| CAAAATTGAATACCAAGGTT+TGG | 0.366202 | 5_1:-27929023 | Msa0726650:CDS |
| TACCCTTCCAATTCATTTCA+AGG | 0.368503 | 5_1:+27927300 | None:intergenic |
| GACTTGTGTGGAACTGGAAT+TGG | 0.369457 | 5_1:-27929334 | Msa0726650:CDS |
| TCTCGCCAACAACCCAGAAT+TGG | 0.370143 | 5_1:-27929820 | Msa0726650:CDS |
| TTTAAATTTATAAGTAAGAC+TGG | 0.370330 | 5_1:-27928908 | Msa0726650:CDS |
| CAATTTGTTGTAACAGAAAC+GGG | 0.371977 | 5_1:+27929306 | None:intergenic |
| TGCGGATTGGAATGTTTCTT+TGG | 0.373809 | 5_1:-27927120 | Msa0726650:three_prime_UTR |
| GGCCGCCTCTTTCCCAGTTA+AGG | 0.373821 | 5_1:-27927273 | Msa0726650:three_prime_UTR |
| ATCTAGAAAACTCTGATGAT+TGG | 0.382445 | 5_1:+27928961 | None:intergenic |
| GTTATACATAAACCTATTGA+TGG | 0.384287 | 5_1:-27927447 | Msa0726650:CDS |
| TTCAACGACTTGTGTGGAAC+TGG | 0.388456 | 5_1:-27929340 | Msa0726650:CDS |
| AACATTCACATGCCGTAAAC+AGG | 0.391123 | 5_1:+27926608 | None:intergenic |
| TTTGCTTCGAATTTGGGTTC+AGG | 0.395320 | 5_1:+27929211 | None:intergenic |
| TCAGCATCATTTCCATCAAT+AGG | 0.398266 | 5_1:+27927435 | None:intergenic |
| GTTACCAGTACCAGATTGAT+TGG | 0.402261 | 5_1:+27928235 | None:intergenic |
| GGCCGTCCAAATGTTAGAAA+TGG | 0.403839 | 5_1:-27926786 | Msa0726650:three_prime_UTR |
| ACAGGATAAAACTGGATTGC+GGG | 0.404194 | 5_1:+27930016 | None:intergenic |
| ATTGCAGAATAAAAGGTAAA+CGG | 0.406600 | 5_1:+27929904 | None:intergenic |
| CGCAGTAAATCGACGCTTTG+AGG | 0.407828 | 5_1:+27926866 | None:intergenic |
| TGGAAAATTAGGTGCATTCA+AGG | 0.408568 | 5_1:-27928633 | Msa0726650:intron |
| CGATCAAAGAGGAGCACAAA+TGG | 0.416683 | 5_1:+27929112 | None:intergenic |
| TACCAAAATTTCCTTGCAAA+AGG | 0.425689 | 5_1:+27927240 | None:intergenic |
| AGTGAGTGTAGCCCATAGTT+TGG | 0.431953 | 5_1:+27929060 | None:intergenic |
| TCTTTAGTACGTGTTCCCTC+CGG | 0.433745 | 5_1:+27928656 | None:intergenic |
| CCAATCACCCTTATTGGAAC+TGG | 0.434071 | 5_1:-27927525 | Msa0726650:CDS |
| TCAATTTGTTGTAACAGAAA+CGG | 0.436103 | 5_1:+27929305 | None:intergenic |
| CCAAATTCGAAGCAAAACTT+AGG | 0.437800 | 5_1:-27929204 | Msa0726650:CDS |
| TCGTTTAGTACTATGGAGAA+TGG | 0.446545 | 5_1:-27926919 | Msa0726650:three_prime_UTR |
| TTTAATGTTCTCTTGCTATC+GGG | 0.449897 | 5_1:+27926704 | None:intergenic |
| CCCAATCATGCCAGCAGGAA+GGG | 0.451522 | 5_1:-27927502 | Msa0726650:CDS |
| GTAATCCAATTCTGGGTTGT+TGG | 0.451811 | 5_1:+27929815 | None:intergenic |
| CGGCTGTCCATGCGCTTCAA+AGG | 0.453922 | 5_1:+27928833 | None:intergenic |
| TTTATGTATAACAACTTTCA+CGG | 0.455862 | 5_1:+27927458 | None:intergenic |
| AAACGGGAAAGAAGGTTAGT+TGG | 0.455879 | 5_1:+27929921 | None:intergenic |
| TTGCAGAATAAAAGGTAAAC+GGG | 0.457813 | 5_1:+27929905 | None:intergenic |
| GTTCCGCGTAATCCAATTCT+GGG | 0.460240 | 5_1:+27929808 | None:intergenic |
| GTCGTTGAATTTGGGAGTAA+AGG | 0.464488 | 5_1:+27929354 | None:intergenic |
| ATAAGGGTGATTGGTACAAC+TGG | 0.467577 | 5_1:+27927534 | None:intergenic |
| TTATTTCGTCGCCAAACTAT+GGG | 0.485372 | 5_1:-27929071 | Msa0726650:CDS |
| CTTTAGTACGTGTTCCCTCC+GGG | 0.487779 | 5_1:+27928657 | None:intergenic |
| CCAGTTCCAATAAGGGTGAT+TGG | 0.489847 | 5_1:+27927525 | None:intergenic |
| CTCTCATTTAATTCTTCTGT+AGG | 0.491475 | 5_1:+27926830 | None:intergenic |
| TCTCATTTAATTCTTCTGTA+GGG | 0.493276 | 5_1:+27926831 | None:intergenic |
| AGGGAGGGTATATTGAACTT+AGG | 0.500285 | 5_1:-27927483 | Msa0726650:CDS |
| CTCTGATCAGTCACAACAGT+CGG | 0.502072 | 5_1:-27928264 | Msa0726650:CDS |
| TAAAAGGTAAACGGGAAAGA+AGG | 0.504754 | 5_1:+27929913 | None:intergenic |
| AATATACCCTCCCTTCCTGC+TGG | 0.506546 | 5_1:+27927492 | None:intergenic |
| CGAAATAATGAAACTTTCTA+CGG | 0.510151 | 5_1:+27929086 | None:intergenic |
| CAAATTCGAAGCAAAACTTA+GGG | 0.510545 | 5_1:-27929203 | Msa0726650:CDS |
| TCGGGATACTCCAATCAATC+TGG | 0.513485 | 5_1:-27928245 | Msa0726650:intron |
| ATACCTTGAAATGAATTGGA+AGG | 0.517248 | 5_1:-27927303 | Msa0726650:intron |
| TAGAGACAACGATGATGGAT+TGG | 0.518714 | 5_1:+27929853 | None:intergenic |
| GATTGGGCCAGTTCCAATAA+GGG | 0.518993 | 5_1:+27927518 | None:intergenic |
| GAGGGAACACGTACTAAAGA+TGG | 0.519060 | 5_1:-27928653 | Msa0726650:CDS |
| TTTCAGTCTTGTGTGCGGAT+TGG | 0.521385 | 5_1:-27927133 | Msa0726650:three_prime_UTR |
| CTCAGTTTCATGCCTTTGTG+TGG | 0.524773 | 5_1:-27926750 | Msa0726650:three_prime_UTR |
| CAACGATTCCATAGAAGAAG+AGG | 0.525945 | 5_1:-27929970 | Msa0726650:five_prime_UTR |
| TGTAATTCCTTTGAAGCGCA+TGG | 0.527397 | 5_1:-27928840 | Msa0726650:CDS |
| AGAGATAGAGACAACGATGA+TGG | 0.529836 | 5_1:+27929848 | None:intergenic |
| ATCCATTTCTAACATTTGGA+CGG | 0.535933 | 5_1:+27926784 | None:intergenic |
| GCAGTCATAAGTTGTTTCAT+CGG | 0.542355 | 5_1:-27927053 | Msa0726650:three_prime_UTR |
| TCTGATCAGTCACAACAGTC+GGG | 0.542843 | 5_1:-27928263 | Msa0726650:CDS |
| CCCAAATTCAACGACTTGTG+TGG | 0.542928 | 5_1:-27929346 | Msa0726650:CDS |
| CTTATAACAGTAACGAAATG+TGG | 0.547490 | 5_1:+27927170 | None:intergenic |
| ACTACCATACCATCTGGCTT+CGG | 0.548408 | 5_1:+27928813 | None:intergenic |
| TACCTTGAAATGAATTGGAA+GGG | 0.549444 | 5_1:-27927302 | Msa0726650:three_prime_UTR |
| ATATATACTCTTCTTACTCT+CGG | 0.551443 | 5_1:-27928938 | Msa0726650:CDS |
| ACAGAAGAATTAAATGAGAG+TGG | 0.551681 | 5_1:-27926827 | Msa0726650:three_prime_UTR |
| GATTGGAGAAGCAACTTCCA+TGG | 0.555134 | 5_1:+27929870 | None:intergenic |
| ACATGCTATGCAAAGAAGCT+AGG | 0.561771 | 5_1:-27927413 | Msa0726650:CDS |
| CTTAAATCAATGATATCAGA+TGG | 0.574964 | 5_1:+27928310 | None:intergenic |
| TTGATTCATATTGAAGCACC+AGG | 0.577624 | 5_1:-27927024 | Msa0726650:three_prime_UTR |
| ACTGGCCCAATCATGCCAGC+AGG | 0.578766 | 5_1:-27927507 | Msa0726650:CDS |
| CATGGACAGCCGAAGCCAGA+TGG | 0.578811 | 5_1:-27928822 | Msa0726650:intron |
| GCCCAATCATGCCAGCAGGA+AGG | 0.586079 | 5_1:-27927503 | Msa0726650:CDS |
| ACAACTTATGACTGCACTAG+AGG | 0.588669 | 5_1:+27927061 | None:intergenic |
| GACAGGATAAAACTGGATTG+CGG | 0.589419 | 5_1:+27930015 | None:intergenic |
| ATGGTAGATTCTCCAAACCT+TGG | 0.591226 | 5_1:+27929011 | None:intergenic |
| ATTGTCCTTAACTGGGAAAG+AGG | 0.591954 | 5_1:+27927268 | None:intergenic |
| TAAGTAATGTTTCCACACAA+AGG | 0.591976 | 5_1:+27926738 | None:intergenic |
| CAGAAGAATTAAATGAGAGT+GGG | 0.595284 | 5_1:-27926826 | Msa0726650:three_prime_UTR |
| CAACCCAGAATTGGATTACG+CGG | 0.595300 | 5_1:-27929811 | Msa0726650:CDS |
| ATCATGCCAGCAGGAAGGGA+GGG | 0.597193 | 5_1:-27927498 | Msa0726650:CDS |
| GCAAACTCATAGCTAGTACC+TGG | 0.602005 | 5_1:+27927006 | None:intergenic |
| GACTGATCAGAGGAAGCAAA+GGG | 0.602959 | 5_1:+27928275 | None:intergenic |
| ATTACTGCTGCATCGAGAGA+CGG | 0.604857 | 5_1:-27929244 | Msa0726650:CDS |
| TTGCATTTCAGTCTTGTGTG+CGG | 0.606982 | 5_1:-27927138 | Msa0726650:three_prime_UTR |
| TGACTGATCAGAGGAAGCAA+AGG | 0.609626 | 5_1:+27928274 | None:intergenic |
| GCTGCATCGAGAGACGGAGA+CGG | 0.609897 | 5_1:-27929238 | Msa0726650:CDS |
| TTAAATTTATAAGTAAGACT+GGG | 0.618128 | 5_1:-27928907 | Msa0726650:CDS |
| GGTACTAATTGTCCTTAACT+GGG | 0.618994 | 5_1:+27927261 | None:intergenic |
| AATCATGCCAGCAGGAAGGG+AGG | 0.620185 | 5_1:-27927499 | Msa0726650:CDS |
| TGATTGGAAACATAGACGGC+GGG | 0.620368 | 5_1:+27928977 | None:intergenic |
| CGACTGTTGTGACTGATCAG+AGG | 0.620610 | 5_1:+27928265 | None:intergenic |
| CTGATGATTGGAAACATAGA+CGG | 0.622115 | 5_1:+27928973 | None:intergenic |
| ACGGCGGGAGTATCTGGAGA+TGG | 0.622338 | 5_1:+27928992 | None:intergenic |
| TTTAGTACTATGGAGAATGG+AGG | 0.631415 | 5_1:-27926916 | Msa0726650:three_prime_UTR |
| ATAAGCAAAGAAATGTGTTG+AGG | 0.633011 | 5_1:-27929381 | Msa0726650:CDS |
| GTACTAAACGAACAATGTTG+AGG | 0.633786 | 5_1:+27926931 | None:intergenic |
| GTCCTTAACTGGGAAAGAGG+CGG | 0.658330 | 5_1:+27927271 | None:intergenic |
| ATGATTGGAAACATAGACGG+CGG | 0.672168 | 5_1:+27928976 | None:intergenic |
| AAATTCGAAGCAAAACTTAG+GGG | 0.693042 | 5_1:-27929202 | Msa0726650:CDS |
| ATCTTACAATGACATCTCTG+CGG | 0.702894 | 5_1:+27929272 | None:intergenic |
| TTCTACGGTAACGATCAAAG+AGG | 0.708489 | 5_1:+27929101 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGATTTTATTAAATTAATAG+CGG | + | chr5_1:27927075-27927094 | None:intergenic | 10.0% |
| !!! | ATTTTCTACTAAATAAAAAT+AGG | + | chr5_1:27928994-27929013 | None:intergenic | 10.0% |
| !! | TTTAAATTTATAAGTAAGAC+TGG | - | chr5_1:27927728-27927747 | Msa0726650:intron | 15.0% |
| !! | TTAAATTTATAAGTAAGACT+GGG | - | chr5_1:27927729-27927748 | Msa0726650:intron | 15.0% |
| !! | TCAAATTAATAGTTCTTAAT+GGG | - | chr5_1:27928807-27928826 | Msa0726650:intron | 15.0% |
| !!! | ATGTTTTTACATTTAAAGAC+AGG | + | chr5_1:27926641-27926660 | None:intergenic | 20.0% |
| !! | TGTCTTTAAATGTAAAAACA+TGG | - | chr5_1:27926640-27926659 | Msa0726650:three_prime_UTR | 20.0% |
| !!! | TGGTATTCAATTTTGAAAAA+CGG | + | chr5_1:27927608-27927627 | None:intergenic | 20.0% |
| !!! | TTTTTCAAAATTGAATACCA+AGG | - | chr5_1:27927608-27927627 | Msa0726650:intron | 20.0% |
| !!! | ACCTAATTTTAACAACTTAT+TGG | - | chr5_1:27927878-27927897 | Msa0726650:intron | 20.0% |
| !! | ACCAATAAGTTGTTAAAATT+AGG | + | chr5_1:27927882-27927901 | None:intergenic | 20.0% |
| !! | ACTCAATTATCTATAATTGT+TGG | + | chr5_1:27928090-27928109 | None:intergenic | 20.0% |
| !! | ATTAAGTCCTATATTTCATA+TGG | - | chr5_1:27928253-27928272 | Msa0726650:CDS | 20.0% |
| !!! | TCTAGCACATATTAAATTTT+AGG | - | chr5_1:27928774-27928793 | Msa0726650:intron | 20.0% |
| !! | GTCAAATTAATAGTTCTTAA+TGG | - | chr5_1:27928806-27928825 | Msa0726650:intron | 20.0% |
| !! | TTTATGTATAACAACTTTCA+CGG | + | chr5_1:27929181-27929200 | None:intergenic | 20.0% |
| !!! | AGGAAATTTTGGTATTTTAT+AGG | - | chr5_1:27929405-27929424 | Msa0726650:intron | 20.0% |
| !! | TATGCAAAAAAAAACTAGTT+GGG | + | chr5_1:27929963-27929982 | None:intergenic | 20.0% |
| ! | ATTTAAAGACAGGATAAAAC+TGG | + | chr5_1:27926631-27926650 | None:intergenic | 25.0% |
| ! | ATTGCAGAATAAAAGGTAAA+CGG | + | chr5_1:27926735-27926754 | None:intergenic | 25.0% |
| ! | TGAAACAATTGCAGAATAAA+AGG | + | chr5_1:27926742-27926761 | None:intergenic | 25.0% |
| !!! | TTCTTTCAATCTTTGAAGTA+TGG | - | chr5_1:27926876-27926895 | Msa0726650:three_prime_UTR | 25.0% |
| !! | TGATTTTCTCAAATTAACAG+CGG | + | chr5_1:27926931-27926950 | None:intergenic | 25.0% |
| ! | TATTAAATTAATAGCGGTGT+TGG | + | chr5_1:27927069-27927088 | None:intergenic | 25.0% |
| !! | ACACATTTCTTTGCTTATTT+TGG | + | chr5_1:27927253-27927272 | None:intergenic | 25.0% |
| !!! | TCAATTTGTTGTAACAGAAA+CGG | + | chr5_1:27927334-27927353 | None:intergenic | 25.0% |
| ! | AAAAAGAAATATAGCAGCAA+AGG | + | chr5_1:27927483-27927502 | None:intergenic | 25.0% |
| ! | CGAAATAATGAAACTTTCTA+CGG | + | chr5_1:27927553-27927572 | None:intergenic | 25.0% |
| ! | ATATATACTCTTCTTACTCT+CGG | - | chr5_1:27927698-27927717 | Msa0726650:intron | 25.0% |
| !! | ATATTCCTTTTTCCGATAAT+TGG | - | chr5_1:27927752-27927771 | Msa0726650:intron | 25.0% |
| ! | TTAAATGCTTCTTCATGTAT+AGG | - | chr5_1:27927901-27927920 | Msa0726650:intron | 25.0% |
| ! | TTATCTTATCTACTCTACAA+AGG | + | chr5_1:27928053-27928072 | None:intergenic | 25.0% |
| ! | CTTAAATCAATGATATCAGA+TGG | + | chr5_1:27928329-27928348 | None:intergenic | 25.0% |
| !! | AGAACTATTAATTTGACAGT+TGG | + | chr5_1:27928803-27928822 | None:intergenic | 25.0% |
| !!! | TCAACTTTTATTTTTCCTCT+GGG | - | chr5_1:27929034-27929053 | Msa0726650:CDS | 25.0% |
| ! | GTTATACATAAACCTATTGA+TGG | - | chr5_1:27929189-27929208 | Msa0726650:CDS | 25.0% |
| ! | TCTCATTTAATTCTTCTGTA+GGG | + | chr5_1:27929808-27929827 | None:intergenic | 25.0% |
| ! | TATCATCCATTTCTAACATT+TGG | + | chr5_1:27929859-27929878 | None:intergenic | 25.0% |
| !!! | TTTTAATGTTCTCTTGCTAT+CGG | + | chr5_1:27929936-27929955 | None:intergenic | 25.0% |
| ! | CTATGCAAAAAAAAACTAGT+TGG | + | chr5_1:27929964-27929983 | None:intergenic | 25.0% |
| TTGCAGAATAAAAGGTAAAC+GGG | + | chr5_1:27926734-27926753 | None:intergenic | 30.0% | |
| ! | TGCAATTGTTTCATTTTCCA+TGG | - | chr5_1:27926749-27926768 | Msa0726650:three_prime_UTR | 30.0% |
| AAGAATCACTTACCGAAAAA+AGG | + | chr5_1:27926861-27926880 | None:intergenic | 30.0% | |
| TTGAAGTATGGATACAAACA+CGG | - | chr5_1:27926888-27926907 | Msa0726650:three_prime_UTR | 30.0% | |
| GATTTCACATAACATAAGCA+CGG | + | chr5_1:27927174-27927193 | None:intergenic | 30.0% | |
| ATAAGCAAAGAAATGTGTTG+AGG | - | chr5_1:27927255-27927274 | Msa0726650:three_prime_UTR | 30.0% | |
| !! | CAATTTGTTGTAACAGAAAC+GGG | + | chr5_1:27927333-27927352 | None:intergenic | 30.0% |
| ! | CTAAGTTTTGCTTCGAATTT+GGG | + | chr5_1:27927434-27927453 | None:intergenic | 30.0% |
| CAAATTCGAAGCAAAACTTA+GGG | - | chr5_1:27927433-27927452 | Msa0726650:CDS | 30.0% | |
| AAATTCGAAGCAAAACTTAG+GGG | - | chr5_1:27927434-27927453 | Msa0726650:CDS | 30.0% | |
| CAAAATTGAATACCAAGGTT+TGG | - | chr5_1:27927613-27927632 | Msa0726650:intron | 30.0% | |
| ATCTAGAAAACTCTGATGAT+TGG | + | chr5_1:27927678-27927697 | None:intergenic | 30.0% | |
| AAAAGAAAAACAACGGTTGA+AGG | + | chr5_1:27927854-27927873 | None:intergenic | 30.0% | |
| GGTGCAAAAAAGAAAAACAA+CGG | + | chr5_1:27927861-27927880 | None:intergenic | 30.0% | |
| CGTACTAAAGATGGAAAATT+AGG | - | chr5_1:27927992-27928011 | Msa0726650:intron | 30.0% | |
| TAGAGTAGATAAGATAATCG+TGG | - | chr5_1:27928056-27928075 | Msa0726650:intron | 30.0% | |
| AGGTTATTTATTTGTGTTCC+AGG | + | chr5_1:27928156-27928175 | None:intergenic | 30.0% | |
| !! | CCTTCGACTATAATTTTGAT+AGG | + | chr5_1:27928176-27928195 | None:intergenic | 30.0% |
| CCTATCAAAATTATAGTCGA+AGG | - | chr5_1:27928173-27928192 | Msa0726650:intron | 30.0% | |
| TCAAAATTATAGTCGAAGGA+TGG | - | chr5_1:27928177-27928196 | Msa0726650:intron | 30.0% | |
| ATTGCAGCCATATGAAATAT+AGG | + | chr5_1:27928263-27928282 | None:intergenic | 30.0% | |
| !! | CTGAATATTTTGTGAGTTGA+AGG | + | chr5_1:27928674-27928693 | None:intergenic | 30.0% |
| GGACGATAATTAACCTATAT+AGG | - | chr5_1:27928902-27928921 | Msa0726650:CDS | 30.0% | |
| !!! | GTCAACTTTTATTTTTCCTC+TGG | - | chr5_1:27929033-27929052 | Msa0726650:CDS | 30.0% |
| !!! | CAACTTTTATTTTTCCTCTG+GGG | - | chr5_1:27929035-27929054 | Msa0726650:CDS | 30.0% |
| CCAATTCATTTCAAGGTATA+AGG | + | chr5_1:27929332-27929351 | None:intergenic | 30.0% | |
| CCTTATACCTTGAAATGAAT+TGG | - | chr5_1:27929329-27929348 | Msa0726650:CDS | 30.0% | |
| ATACCTTGAAATGAATTGGA+AGG | - | chr5_1:27929333-27929352 | Msa0726650:CDS | 30.0% | |
| TACCTTGAAATGAATTGGAA+GGG | - | chr5_1:27929334-27929353 | Msa0726650:CDS | 30.0% | |
| AATGAATTGGAAGGGTAAAA+TGG | - | chr5_1:27929342-27929361 | Msa0726650:CDS | 30.0% | |
| ! | TACCTTTTGCAAGGAAATTT+TGG | - | chr5_1:27929394-27929413 | Msa0726650:CDS | 30.0% |
| TACCAAAATTTCCTTGCAAA+AGG | + | chr5_1:27929399-27929418 | None:intergenic | 30.0% | |
| CTTATAACAGTAACGAAATG+TGG | + | chr5_1:27929469-27929488 | None:intergenic | 30.0% | |
| TCATTCTTTGTCAGTCATAT+TGG | - | chr5_1:27929680-27929699 | Msa0726650:intron | 30.0% | |
| ACATTGTTCGTTTAGTACTA+TGG | - | chr5_1:27929710-27929729 | Msa0726650:intron | 30.0% | |
| CTCTCATTTAATTCTTCTGT+AGG | + | chr5_1:27929809-27929828 | None:intergenic | 30.0% | |
| ACAGAAGAATTAAATGAGAG+TGG | - | chr5_1:27929809-27929828 | Msa0726650:CDS | 30.0% | |
| CAGAAGAATTAAATGAGAGT+GGG | - | chr5_1:27929810-27929829 | Msa0726650:CDS | 30.0% | |
| ATCCATTTCTAACATTTGGA+CGG | + | chr5_1:27929855-27929874 | None:intergenic | 30.0% | |
| TAAGTAATGTTTCCACACAA+AGG | + | chr5_1:27929901-27929920 | None:intergenic | 30.0% | |
| ! | TTTAATGTTCTCTTGCTATC+GGG | + | chr5_1:27929935-27929954 | None:intergenic | 30.0% |
| CTTAATTGCCTCTTCTTCTA+TGG | + | chr5_1:27926677-27926696 | None:intergenic | 35.0% | |
| ! | GGTTAGTTGGATTGTATCTA+TGG | + | chr5_1:27926705-27926724 | None:intergenic | 35.0% |
| TAAAAGGTAAACGGGAAAGA+AGG | + | chr5_1:27926726-27926745 | None:intergenic | 35.0% | |
| AATCACTTACCGAAAAAAGG+AGG | + | chr5_1:27926858-27926877 | None:intergenic | 35.0% | |
| GCTGACACATATAATTACAC+TGG | + | chr5_1:27926960-27926979 | None:intergenic | 35.0% | |
| TTGTATCCATGCTTCAAACA+TGG | + | chr5_1:27927029-27927048 | None:intergenic | 35.0% | |
| ATCTTACAATGACATCTCTG+CGG | + | chr5_1:27927367-27927386 | None:intergenic | 35.0% | |
| ! | CCTAAGTTTTGCTTCGAATT+TGG | + | chr5_1:27927435-27927454 | None:intergenic | 35.0% |
| CCAAATTCGAAGCAAAACTT+AGG | - | chr5_1:27927432-27927451 | Msa0726650:CDS | 35.0% | |
| ! | CTTTTTATCTTCATGCTGCT+TGG | - | chr5_1:27927497-27927516 | Msa0726650:CDS | 35.0% |
| ATTATTTCGTCGCCAAACTA+TGG | - | chr5_1:27927564-27927583 | Msa0726650:CDS | 35.0% | |
| TTATTTCGTCGCCAAACTAT+GGG | - | chr5_1:27927565-27927584 | Msa0726650:CDS | 35.0% | |
| CTGATGATTGGAAACATAGA+CGG | + | chr5_1:27927666-27927685 | None:intergenic | 35.0% | |
| ! | TCCTTTTTCCGATAATTGGT+TGG | - | chr5_1:27927756-27927775 | Msa0726650:intron | 35.0% |
| ! | CCTTTTTCCGATAATTGGTT+GGG | - | chr5_1:27927757-27927776 | Msa0726650:intron | 35.0% |
| AACATTGCCCAACCAATTAT+CGG | + | chr5_1:27927767-27927786 | None:intergenic | 35.0% | |
| ! | TGCATCGATCTGATCAAAAA+AGG | - | chr5_1:27927938-27927957 | Msa0726650:intron | 35.0% |
| TGGAAAATTAGGTGCATTCA+AGG | - | chr5_1:27928003-27928022 | Msa0726650:intron | 35.0% | |
| ! | ACAAAAAAGAGCACATAACC+TGG | - | chr5_1:27928135-27928154 | Msa0726650:intron | 35.0% |
| ! | TGTCATGTTTGCCATGATTT+TGG | - | chr5_1:27928292-27928311 | Msa0726650:CDS | 35.0% |
| ! | GTCATGTTTGCCATGATTTT+GGG | - | chr5_1:27928293-27928312 | Msa0726650:CDS | 35.0% |
| ! | GAAAGAAGAGTGCATATCAA+AGG | + | chr5_1:27928560-27928579 | None:intergenic | 35.0% |
| ATTCTGCTAGCTCAATTAAC+TGG | - | chr5_1:27928617-27928636 | Msa0726650:intron | 35.0% | |
| TGATGTGAAGCTACTGAATT+TGG | + | chr5_1:27928646-27928665 | None:intergenic | 35.0% | |
| TATTCAGCAAATCTCCTTGA+AGG | - | chr5_1:27928687-27928706 | Msa0726650:CDS | 35.0% | |
| ATTCAGCAAATCTCCTTGAA+GGG | - | chr5_1:27928688-27928707 | Msa0726650:CDS | 35.0% | |
| ! | TTAATGGGTGCAAATACTCT+TGG | - | chr5_1:27928822-27928841 | Msa0726650:intron | 35.0% |
| ! | TAATGGGTGCAAATACTCTT+GGG | - | chr5_1:27928823-27928842 | Msa0726650:CDS | 35.0% |
| TCAGCATCATTTCCATCAAT+AGG | + | chr5_1:27929204-27929223 | None:intergenic | 35.0% | |
| TACCCTTCCAATTCATTTCA+AGG | + | chr5_1:27929339-27929358 | None:intergenic | 35.0% | |
| GGTACTAATTGTCCTTAACT+GGG | + | chr5_1:27929378-27929397 | None:intergenic | 35.0% | |
| AGGTACTAATTGTCCTTAAC+TGG | + | chr5_1:27929379-27929398 | None:intergenic | 35.0% | |
| ! | GACAATTAGTACCTTTTGCA+AGG | - | chr5_1:27929385-27929404 | Msa0726650:CDS | 35.0% |
| ! | GCAGTCATAAGTTGTTTCAT+CGG | - | chr5_1:27929583-27929602 | Msa0726650:intron | 35.0% |
| ! | TTGATTCATATTGAAGCACC+AGG | - | chr5_1:27929612-27929631 | Msa0726650:intron | 35.0% |
| GTACTAAACGAACAATGTTG+AGG | + | chr5_1:27929708-27929727 | None:intergenic | 35.0% | |
| TCGTTTAGTACTATGGAGAA+TGG | - | chr5_1:27929717-27929736 | Msa0726650:intron | 35.0% | |
| TTTAGTACTATGGAGAATGG+AGG | - | chr5_1:27929720-27929739 | Msa0726650:intron | 35.0% | |
| TGGGAATGTGCAAACTAAAA+TGG | - | chr5_1:27929829-27929848 | Msa0726650:CDS | 35.0% | |
| ACAGGATAAAACTGGATTGC+GGG | + | chr5_1:27926623-27926642 | None:intergenic | 40.0% | |
| GACAGGATAAAACTGGATTG+CGG | + | chr5_1:27926624-27926643 | None:intergenic | 40.0% | |
| CAACGATTCCATAGAAGAAG+AGG | - | chr5_1:27926666-27926685 | Msa0726650:three_prime_UTR | 40.0% | |
| AAACGGGAAAGAAGGTTAGT+TGG | + | chr5_1:27926718-27926737 | None:intergenic | 40.0% | |
| !! | TAGAGACAACGATGATGGAT+TGG | + | chr5_1:27926786-27926805 | None:intergenic | 40.0% |
| AGAGATAGAGACAACGATGA+TGG | + | chr5_1:27926791-27926810 | None:intergenic | 40.0% | |
| GTAATCCAATTCTGGGTTGT+TGG | + | chr5_1:27926824-27926843 | None:intergenic | 40.0% | |
| TCTCAAATTAACAGCGGTGT+CGG | + | chr5_1:27926925-27926944 | None:intergenic | 40.0% | |
| GTCGTTGAATTTGGGAGTAA+AGG | + | chr5_1:27927285-27927304 | None:intergenic | 40.0% | |
| CCACACAAGTCGTTGAATTT+GGG | + | chr5_1:27927293-27927312 | None:intergenic | 40.0% | |
| TCCACACAAGTCGTTGAATT+TGG | + | chr5_1:27927294-27927313 | None:intergenic | 40.0% | |
| ! | TTTGCTTCGAATTTGGGTTC+AGG | + | chr5_1:27927428-27927447 | None:intergenic | 40.0% |
| TTCTACGGTAACGATCAAAG+AGG | + | chr5_1:27927538-27927557 | None:intergenic | 40.0% | |
| ATGGTAGATTCTCCAAACCT+TGG | + | chr5_1:27927628-27927647 | None:intergenic | 40.0% | |
| ATGATTGGAAACATAGACGG+CGG | + | chr5_1:27927663-27927682 | None:intergenic | 40.0% | |
| CCCAACCAATTATCGGAAAA+AGG | + | chr5_1:27927760-27927779 | None:intergenic | 40.0% | |
| ! | TGGTTGGGCAATGTTTCTTT+TGG | - | chr5_1:27927772-27927791 | Msa0726650:intron | 40.0% |
| ! | GGTTGGGCAATGTTTCTTTT+GGG | - | chr5_1:27927773-27927792 | Msa0726650:intron | 40.0% |
| !! | TGTAATTCCTTTGAAGCGCA+TGG | - | chr5_1:27927796-27927815 | Msa0726650:intron | 40.0% |
| AAGCTTCATGCCCAAAATCA+TGG | + | chr5_1:27928306-27928325 | None:intergenic | 40.0% | |
| TACTCCAATCAATCTGGTAC+TGG | - | chr5_1:27928397-27928416 | Msa0726650:intron | 40.0% | |
| GTTACCAGTACCAGATTGAT+TGG | + | chr5_1:27928404-27928423 | None:intergenic | 40.0% | |
| ! | TGTCATGGTGCTGAATATTG+AGG | + | chr5_1:27928433-27928452 | None:intergenic | 40.0% |
| ! | ATAAGCATTGTAGTGAGGCA+TGG | + | chr5_1:27928515-27928534 | None:intergenic | 40.0% |
| ! | AAGGAAGGCATGAAACTATG+AGG | + | chr5_1:27928541-27928560 | None:intergenic | 40.0% |
| ! | GAAGAGTGCATATCAAAGGA+AGG | + | chr5_1:27928556-27928575 | None:intergenic | 40.0% |
| CTGCCAATAATTATCTGGTC+AGG | + | chr5_1:27928714-27928733 | None:intergenic | 40.0% | |
| GACCAGATAATTATTGGCAG+TGG | - | chr5_1:27928714-27928733 | Msa0726650:CDS | 40.0% | |
| TGCCACTGCCAATAATTATC+TGG | + | chr5_1:27928719-27928738 | None:intergenic | 40.0% | |
| ACGTCACACGCGTATATATA+GGG | - | chr5_1:27928881-27928900 | Msa0726650:CDS | 40.0% | |
| CTGCGTAATGCTACCTATAT+AGG | + | chr5_1:27928918-27928937 | None:intergenic | 40.0% | |
| ATAAGGGTGATTGGTACAAC+TGG | + | chr5_1:27929105-27929124 | None:intergenic | 40.0% | |
| GTTGTACCAATCACCCTTAT+TGG | - | chr5_1:27929105-27929124 | Msa0726650:CDS | 40.0% | |
| ! | AGGGAGGGTATATTGAACTT+AGG | - | chr5_1:27929153-27929172 | Msa0726650:CDS | 40.0% |
| ACATGCTATGCAAAGAAGCT+AGG | - | chr5_1:27929223-27929242 | Msa0726650:CDS | 40.0% | |
| ATTGTCCTTAACTGGGAAAG+AGG | + | chr5_1:27929371-27929390 | None:intergenic | 40.0% | |
| ! | TTGCATTTCAGTCTTGTGTG+CGG | - | chr5_1:27929498-27929517 | Msa0726650:intron | 40.0% |
| !! | TGCGGATTGGAATGTTTCTT+TGG | - | chr5_1:27929516-27929535 | Msa0726650:intron | 40.0% |
| ACAACTTATGACTGCACTAG+AGG | + | chr5_1:27929578-27929597 | None:intergenic | 40.0% | |
| GATTGGAGAAGCAACTTCCA+TGG | + | chr5_1:27926769-27926788 | None:intergenic | 45.0% | |
| CAACCCAGAATTGGATTACG+CGG | - | chr5_1:27926825-27926844 | Msa0726650:three_prime_UTR | 45.0% | |
| GTTCCGCGTAATCCAATTCT+GGG | + | chr5_1:27926831-27926850 | None:intergenic | 45.0% | |
| TGTTCCGCGTAATCCAATTC+TGG | + | chr5_1:27926832-27926851 | None:intergenic | 45.0% | |
| !!! | GGAACACCTCCTCCTTTTTT+CGG | - | chr5_1:27926846-27926865 | Msa0726650:three_prime_UTR | 45.0% |
| CACTTACCGAAAAAAGGAGG+AGG | + | chr5_1:27926855-27926874 | None:intergenic | 45.0% | |
| TTGTACACGACATCTCACAC+TGG | - | chr5_1:27926981-27927000 | Msa0726650:three_prime_UTR | 45.0% | |
| CTTCAAACATGGACACTCCT+CGG | + | chr5_1:27927018-27927037 | None:intergenic | 45.0% | |
| ! | GAGTGTCCATGTTTGAAGCA+TGG | - | chr5_1:27927020-27927039 | Msa0726650:three_prime_UTR | 45.0% |
| ACTCGTACACTCTGAATGTG+AGG | - | chr5_1:27927143-27927162 | Msa0726650:three_prime_UTR | 45.0% | |
| CCCAAATTCAACGACTTGTG+TGG | - | chr5_1:27927290-27927309 | Msa0726650:three_prime_UTR | 45.0% | |
| TTCAACGACTTGTGTGGAAC+TGG | - | chr5_1:27927296-27927315 | Msa0726650:three_prime_UTR | 45.0% | |
| GACTTGTGTGGAACTGGAAT+TGG | - | chr5_1:27927302-27927321 | Msa0726650:three_prime_UTR | 45.0% | |
| ATTACTGCTGCATCGAGAGA+CGG | - | chr5_1:27927392-27927411 | Msa0726650:CDS | 45.0% | |
| ! | CGATCAAAGAGGAGCACAAA+TGG | + | chr5_1:27927527-27927546 | None:intergenic | 45.0% |
| AGTGAGTGTAGCCCATAGTT+TGG | + | chr5_1:27927579-27927598 | None:intergenic | 45.0% | |
| TGATTGGAAACATAGACGGC+GGG | + | chr5_1:27927662-27927681 | None:intergenic | 45.0% | |
| ! | ACTACCATACCATCTGGCTT+CGG | + | chr5_1:27927826-27927845 | None:intergenic | 45.0% |
| GACACTACTACCATACCATC+TGG | + | chr5_1:27927832-27927851 | None:intergenic | 45.0% | |
| ! | AGCCTCTGTCTTTTTCTTCC+CGG | - | chr5_1:27927961-27927980 | Msa0726650:intron | 45.0% |
| ! | TCTGTCTTTTTCTTCCCGGA+GGG | - | chr5_1:27927965-27927984 | Msa0726650:intron | 45.0% |
| TCTTTAGTACGTGTTCCCTC+CGG | + | chr5_1:27927983-27928002 | None:intergenic | 45.0% | |
| GAGGGAACACGTACTAAAGA+TGG | - | chr5_1:27927983-27928002 | Msa0726650:intron | 45.0% | |
| GACTGATCAGAGGAAGCAAA+GGG | + | chr5_1:27928364-27928383 | None:intergenic | 45.0% | |
| TGACTGATCAGAGGAAGCAA+AGG | + | chr5_1:27928365-27928384 | None:intergenic | 45.0% | |
| CTCTGATCAGTCACAACAGT+CGG | - | chr5_1:27928372-27928391 | Msa0726650:intron | 45.0% | |
| TCTGATCAGTCACAACAGTC+GGG | - | chr5_1:27928373-27928392 | Msa0726650:intron | 45.0% | |
| TCGGGATACTCCAATCAATC+TGG | - | chr5_1:27928391-27928410 | Msa0726650:intron | 45.0% | |
| !! | GGGCAAGAATTAGCTTGTCA+TGG | + | chr5_1:27928448-27928467 | None:intergenic | 45.0% |
| ! | GGAGGATAAGCATTGTAGTG+AGG | + | chr5_1:27928520-27928539 | None:intergenic | 45.0% |
| ! | GAAGGCATGAAACTATGAGG+AGG | + | chr5_1:27928538-27928557 | None:intergenic | 45.0% |
| GGGCCTGACCAGATAATTAT+TGG | - | chr5_1:27928708-27928727 | Msa0726650:CDS | 45.0% | |
| CACGTCACACGCGTATATAT+AGG | - | chr5_1:27928880-27928899 | Msa0726650:CDS | 45.0% | |
| CCAGTTCCAATAAGGGTGAT+TGG | + | chr5_1:27929114-27929133 | None:intergenic | 45.0% | |
| CCAATCACCCTTATTGGAAC+TGG | - | chr5_1:27929111-27929130 | Msa0726650:CDS | 45.0% | |
| GATTGGGCCAGTTCCAATAA+GGG | + | chr5_1:27929121-27929140 | None:intergenic | 45.0% | |
| TGATTGGGCCAGTTCCAATA+AGG | + | chr5_1:27929122-27929141 | None:intergenic | 45.0% | |
| ! | TTTCAGTCTTGTGTGCGGAT+TGG | - | chr5_1:27929503-27929522 | Msa0726650:intron | 45.0% |
| GCAAACTCATAGCTAGTACC+TGG | + | chr5_1:27929633-27929652 | None:intergenic | 45.0% | |
| CTATGAGTTTGCAGCTCTTC+AGG | - | chr5_1:27929641-27929660 | Msa0726650:intron | 45.0% | |
| GGCCGTCCAAATGTTAGAAA+TGG | - | chr5_1:27929850-27929869 | Msa0726650:CDS | 45.0% | |
| CTCAGTTTCATGCCTTTGTG+TGG | - | chr5_1:27929886-27929905 | Msa0726650:exon | 45.0% | |
| TCTCGCCAACAACCCAGAAT+TGG | - | chr5_1:27926816-27926835 | Msa0726650:three_prime_UTR | 50.0% | |
| CACTGGTACACCTTAATCCG+AGG | - | chr5_1:27926998-27927017 | Msa0726650:three_prime_UTR | 50.0% | |
| CATGGACACTCCTCGGATTA+AGG | + | chr5_1:27927011-27927030 | None:intergenic | 50.0% | |
| CTCCGGGAAGAAAAAGACAG+AGG | + | chr5_1:27927966-27927985 | None:intergenic | 50.0% | |
| ! | CTCTGTCTTTTTCTTCCCGG+AGG | - | chr5_1:27927964-27927983 | Msa0726650:intron | 50.0% |
| CTTTAGTACGTGTTCCCTCC+GGG | + | chr5_1:27927982-27928001 | None:intergenic | 50.0% | |
| CGACTGTTGTGACTGATCAG+AGG | + | chr5_1:27928374-27928393 | None:intergenic | 50.0% | |
| GGAGGTTGAGGAAAACCTCT+GGG | + | chr5_1:27928484-27928503 | None:intergenic | 50.0% | |
| AGGAGGTTGAGGAAAACCTC+TGG | + | chr5_1:27928485-27928504 | None:intergenic | 50.0% | |
| ATGGACAGAGTAGGAGGTTG+AGG | + | chr5_1:27928496-27928515 | None:intergenic | 50.0% | |
| TAGTGAGGCATGGACAGAGT+AGG | + | chr5_1:27928505-27928524 | None:intergenic | 50.0% | |
| GAGCATGTGGATGAGCAGAA+GGG | + | chr5_1:27928582-27928601 | None:intergenic | 50.0% | |
| AGAGCATGTGGATGAGCAGA+AGG | + | chr5_1:27928583-27928602 | None:intergenic | 50.0% | |
| TGCTCATCCACATGCTCTGA+TGG | - | chr5_1:27928585-27928604 | Msa0726650:intron | 50.0% | |
| GAGTTAGCCATCAGAGCATG+TGG | + | chr5_1:27928595-27928614 | None:intergenic | 50.0% | |
| TTATCTGGTCAGGCCCTTCA+AGG | + | chr5_1:27928704-27928723 | None:intergenic | 50.0% | |
| ATATACGCGTGTGACGTGTG+TGG | + | chr5_1:27928878-27928897 | None:intergenic | 50.0% | |
| AATATACCCTCCCTTCCTGC+TGG | + | chr5_1:27929147-27929166 | None:intergenic | 50.0% | |
| GTCCTTAACTGGGAAAGAGG+CGG | + | chr5_1:27929368-27929387 | None:intergenic | 50.0% | |
| CGCAGTAAATCGACGCTTTG+AGG | + | chr5_1:27929773-27929792 | None:intergenic | 50.0% | |
| !! | CGGTGTTGGTGTGTCAGTGT+CGG | + | chr5_1:27927055-27927074 | None:intergenic | 55.0% |
| !! | ACATAGACGGCGGGAGTATC+TGG | + | chr5_1:27927653-27927672 | None:intergenic | 55.0% |
| ACAGCCGAAGCCAGATGGTA+TGG | - | chr5_1:27927819-27927838 | Msa0726650:intron | 55.0% | |
| CTCTGGGTGGAGATTGCACA+GGG | + | chr5_1:27928468-27928487 | None:intergenic | 55.0% | |
| GGTTGAGGAAAACCTCTGGG+TGG | + | chr5_1:27928481-27928500 | None:intergenic | 55.0% | |
| TGAGGCATGGACAGAGTAGG+AGG | + | chr5_1:27928502-27928521 | None:intergenic | 55.0% | |
| ! | TTCCTCTGGGGATGCACAGA+AGG | - | chr5_1:27929047-27929066 | Msa0726650:CDS | 55.0% |
| ! | TCCTCTGGGGATGCACAGAA+GGG | - | chr5_1:27929048-27929067 | Msa0726650:CDS | 55.0% |
| CCCTTCCTGCTGGCATGATT+GGG | + | chr5_1:27929137-27929156 | None:intergenic | 55.0% | |
| CCCAATCATGCCAGCAGGAA+GGG | - | chr5_1:27929134-27929153 | Msa0726650:CDS | 55.0% | |
| TCCCTTCCTGCTGGCATGAT+TGG | + | chr5_1:27929138-27929157 | None:intergenic | 55.0% | |
| AATCATGCCAGCAGGAAGGG+AGG | - | chr5_1:27929137-27929156 | Msa0726650:CDS | 55.0% | |
| ATCATGCCAGCAGGAAGGGA+GGG | - | chr5_1:27929138-27929157 | Msa0726650:CDS | 55.0% | |
| GCTGCATCGAGAGACGGAGA+CGG | - | chr5_1:27927398-27927417 | Msa0726650:CDS | 60.0% | |
| !! | ACGGCGGGAGTATCTGGAGA+TGG | + | chr5_1:27927647-27927666 | None:intergenic | 60.0% |
| CGGCTGTCCATGCGCTTCAA+AGG | + | chr5_1:27927806-27927825 | None:intergenic | 60.0% | |
| CATGGACAGCCGAAGCCAGA+TGG | - | chr5_1:27927814-27927833 | Msa0726650:intron | 60.0% | |
| CCTCTGGGTGGAGATTGCAC+AGG | + | chr5_1:27928469-27928488 | None:intergenic | 60.0% | |
| CCTGTGCAATCTCCACCCAG+AGG | - | chr5_1:27928466-27928485 | Msa0726650:intron | 60.0% | |
| TGTGACGTGTGTGGAGGGGT+GGG | + | chr5_1:27928869-27928888 | None:intergenic | 60.0% | |
| ACGCGTGTGACGTGTGTGGA+GGG | + | chr5_1:27928874-27928893 | None:intergenic | 60.0% | |
| TACGCGTGTGACGTGTGTGG+AGG | + | chr5_1:27928875-27928894 | None:intergenic | 60.0% | |
| TCCCTTCTGTGCATCCCCAG+AGG | + | chr5_1:27929052-27929071 | None:intergenic | 60.0% | |
| ACTGGCCCAATCATGCCAGC+AGG | - | chr5_1:27929129-27929148 | Msa0726650:CDS | 60.0% | |
| GCCCAATCATGCCAGCAGGA+AGG | - | chr5_1:27929133-27929152 | Msa0726650:CDS | 60.0% | |
| GGCCGCCTCTTTCCCAGTTA+AGG | - | chr5_1:27929363-27929382 | Msa0726650:CDS | 60.0% | |
| TGACGTGTGTGGAGGGGTGG+GGG | + | chr5_1:27928867-27928886 | None:intergenic | 65.0% | |
| GTGACGTGTGTGGAGGGGTG+GGG | + | chr5_1:27928868-27928887 | None:intergenic | 65.0% | |
| GTGTGACGTGTGTGGAGGGG+TGG | + | chr5_1:27928870-27928889 | None:intergenic | 65.0% | |
| CGCGTGTGACGTGTGTGGAG+GGG | + | chr5_1:27928873-27928892 | None:intergenic | 65.0% | |
| TGTGTGGAGGGGTGGGGGGA+GGG | + | chr5_1:27928862-27928881 | None:intergenic | 70.0% | |
| GACGTGTGTGGAGGGGTGGG+GGG | + | chr5_1:27928866-27928885 | None:intergenic | 70.0% | |
| GTGTGGAGGGGTGGGGGGAG+GGG | + | chr5_1:27928861-27928880 | None:intergenic | 75.0% | |
| GTGTGTGGAGGGGTGGGGGG+AGG | + | chr5_1:27928863-27928882 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 27926620 | 27930038 | 27926620 | ID=Msa0726650;Name=Msa0726650 |
| chr5_1 | mRNA | 27926620 | 27930038 | 27926620 | ID=Msa0726650-mRNA-1;Parent=Msa0726650;Name=Msa0726650-mRNA-1;_AED=0.05;_eAED=0.05;_QI=148|0.6|0.83|0.83|0.8|0.66|6|740|366 |
| chr5_1 | exon | 27926620 | 27927321 | 27926620 | ID=Msa0726650-mRNA-1:exon:9746;Parent=Msa0726650-mRNA-1 |
| chr5_1 | exon | 27927342 | 27927592 | 27927342 | ID=Msa0726650-mRNA-1:exon:9745;Parent=Msa0726650-mRNA-1 |
| chr5_1 | exon | 27928246 | 27928335 | 27928246 | ID=Msa0726650-mRNA-1:exon:9744;Parent=Msa0726650-mRNA-1 |
| chr5_1 | exon | 27928634 | 27928735 | 27928634 | ID=Msa0726650-mRNA-1:exon:9743;Parent=Msa0726650-mRNA-1 |
| chr5_1 | exon | 27928823 | 27929418 | 27928823 | ID=Msa0726650-mRNA-1:exon:9742;Parent=Msa0726650-mRNA-1 |
| chr5_1 | exon | 27929791 | 27930038 | 27929791 | ID=Msa0726650-mRNA-1:exon:9741;Parent=Msa0726650-mRNA-1 |
| chr5_1 | five_prime_UTR | 27929891 | 27930038 | 27929891 | ID=Msa0726650-mRNA-1:five_prime_utr;Parent=Msa0726650-mRNA-1 |
| chr5_1 | CDS | 27929791 | 27929890 | 27929791 | ID=Msa0726650-mRNA-1:cds;Parent=Msa0726650-mRNA-1 |
| chr5_1 | CDS | 27928823 | 27929418 | 27928823 | ID=Msa0726650-mRNA-1:cds;Parent=Msa0726650-mRNA-1 |
| chr5_1 | CDS | 27928634 | 27928735 | 27928634 | ID=Msa0726650-mRNA-1:cds;Parent=Msa0726650-mRNA-1 |
| chr5_1 | CDS | 27928246 | 27928335 | 27928246 | ID=Msa0726650-mRNA-1:cds;Parent=Msa0726650-mRNA-1 |
| chr5_1 | CDS | 27927380 | 27927592 | 27927380 | ID=Msa0726650-mRNA-1:cds;Parent=Msa0726650-mRNA-1 |
| chr5_1 | three_prime_UTR | 27927342 | 27927379 | 27927342 | ID=Msa0726650-mRNA-1:three_prime_utr;Parent=Msa0726650-mRNA-1 |
| chr5_1 | three_prime_UTR | 27926620 | 27927321 | 27926620 | ID=Msa0726650-mRNA-1:three_prime_utr;Parent=Msa0726650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
