AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0127080

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0127080 MtrunA17_Chr1g0185581 99.180 122 1 0 17 138 795 916 4.19e-77 245
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0127080 AT1G03160.4 60.976 123 48 0 16 138 755 877 9.71e-47 161
Msa0127080 AT1G03160.1 60.976 123 48 0 16 138 784 906 1.33e-46 161

Find 253 sgRNAs with CRISPR-Local

Find 409 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGGGTTGGGCTTGGGCCTT+AGG 0.170981 1_3:-56298108 None:intergenic
TTCTAGGCTGGGGTTGGGCT+TGG 0.177671 1_3:-56298116 None:intergenic
GACTGAAGCAGTAGAAAATT+TGG 0.183151 1_3:+56303138 Msa0127080:CDS
GATTGACGAGCCGTTCTTAT+TGG 0.192042 1_3:+56299158 Msa0127080:five_prime_UTR
TACTTGGAGATTACGAAAAT+TGG 0.200895 1_3:+56301567 Msa0127080:five_prime_UTR
CTCAGGACACATGAAGATTT+TGG 0.203758 1_3:-56303288 None:intergenic
GTTACTAGTTTGGAAAGTTT+TGG 0.211804 1_3:+56298729 Msa0127080:five_prime_UTR
AGACAATATTCATTCATATA+TGG 0.235462 1_3:-56302577 None:intergenic
ATAACCAGTGTGATTTATTC+AGG 0.236414 1_3:+56302360 Msa0127080:five_prime_UTR
TTAGCATTCAGAATGATTTC+TGG 0.241925 1_3:+56302246 Msa0127080:five_prime_UTR
CTCAAGCTCGTAAAAGCTAT+TGG 0.253669 1_3:-56300797 None:intergenic
TCTAGGCTGGGGTTGGGCTT+GGG 0.258533 1_3:-56298115 None:intergenic
TCCTTCTGTGTCATCTGTTC+AGG 0.271301 1_3:+56301301 Msa0127080:five_prime_UTR
CATACCTCACTTCCAGTTAA+AGG 0.273809 1_3:-56300176 None:intergenic
GCTTCGAGTTTACTTGCTTC+TGG 0.273889 1_3:+56298693 Msa0127080:five_prime_UTR
ATTAATGATTTCCTGGAATA+GGG 0.274023 1_3:-56303434 None:intergenic
GGAGAGGAAGGAGGGAGATA+TGG 0.277522 1_3:-56297882 None:intergenic
TTCATGTGTCCTGAGTTCTT+TGG 0.283565 1_3:+56303296 Msa0127080:exon
ACTGTGATTAATGCGCTTCT+TGG 0.287328 1_3:+56299782 Msa0127080:five_prime_UTR
TCATGTGTCCTGAGTTCTTT+GGG 0.289607 1_3:+56303297 Msa0127080:exon
CCTTGTATATTCTCCCTTGT+TGG 0.292272 1_3:-56301607 None:intergenic
GATTTGTTAAACTGGAAGAT+AGG 0.296689 1_3:+56298901 Msa0127080:five_prime_UTR
GGAAGCAATGTCCTTCATTA+AGG 0.301311 1_3:+56300627 Msa0127080:five_prime_UTR
AAAATCAGCACCTTCAGATT+TGG 0.302212 1_3:-56298547 None:intergenic
AGGGTGAAGAAGGGAGTAGG+AGG 0.308927 1_3:-56297980 None:intergenic
TGCTGAATCTCAACAAATTC+TGG 0.309212 1_3:+56299198 Msa0127080:five_prime_UTR
CTTATGGCTACCTCTAGTTT+CGG 0.318047 1_3:+56300727 Msa0127080:five_prime_UTR
AATCACAATTCCAACCGATT+TGG 0.321017 1_3:-56298262 None:intergenic
CTCCACAACACGTGATTTAG+TGG 0.321750 1_3:-56301165 None:intergenic
TTGGAAGATCTTCTTGCTCT+TGG 0.322078 1_3:+56302796 Msa0127080:CDS
TGACTTACTTCTCTAAGAAT+TGG 0.324069 1_3:-56299938 None:intergenic
TTCAGTCAAATCCCTCTTCA+TGG 0.324417 1_3:-56303122 None:intergenic
TGGAAAATGAGAGCCTTTCT+TGG 0.326351 1_3:+56301022 Msa0127080:five_prime_UTR
TCTCAACAAATTCTGGTTCC+TGG 0.328955 1_3:+56299205 Msa0127080:five_prime_UTR
GATTAATGATTTCCTGGAAT+AGG 0.331902 1_3:-56303435 None:intergenic
CTTGTTATATAGTAGCTTCC+AGG 0.333462 1_3:-56302472 None:intergenic
CCGCCGGGGAAGAGTGTTCT+AGG 0.335799 1_3:-56298132 None:intergenic
TTATGGCTACCTCTAGTTTC+GGG 0.345941 1_3:+56300728 Msa0127080:five_prime_UTR
TTATATGATTAATGATTTCC+TGG 0.345972 1_3:-56303441 None:intergenic
TCAGCTGATCGCCCTTTAAC+TGG 0.347584 1_3:+56300164 Msa0127080:five_prime_UTR
GGAGAAACAGTTAATAGAAA+TGG 0.348551 1_3:+56298923 Msa0127080:five_prime_UTR
CTTGTATATTCTCCCTTGTT+GGG 0.350679 1_3:-56301606 None:intergenic
TGCTCTTGAAGCAAAACTTA+TGG 0.354047 1_3:+56300711 Msa0127080:five_prime_UTR
GCCTATTCTGCGCCTGATCT+TGG 0.360092 1_3:-56303192 None:intergenic
GATACCTTTGTGAGAGTCAT+TGG 0.361581 1_3:+56303160 Msa0127080:CDS
TCAGTCTCTGGTTCTCAATA+TGG 0.366476 1_3:+56300772 Msa0127080:five_prime_UTR
TCGATATGCCAAGCAGGATT+TGG 0.369694 1_3:+56300951 Msa0127080:five_prime_UTR
GATGGTAGGGAGGGTGAAGA+AGG 0.370005 1_3:-56297990 None:intergenic
GAAATGGCGAGAAACATTAT+TGG 0.371244 1_3:-56298082 None:intergenic
AGGGGATCAAGCTGGCTATC+AGG 0.372164 1_3:+56301709 Msa0127080:five_prime_UTR
GGGTGTAAGGGATGGTAGGG+AGG 0.380250 1_3:-56298000 None:intergenic
AGGTGTGGATAGCGAGAGAA+GGG 0.383193 1_3:-56298022 None:intergenic
TGAAGGATTACATTAGTTCC+AGG 0.384158 1_3:-56300080 None:intergenic
AAGTCTAACAAAGACTAAAC+AGG 0.384986 1_3:-56302548 None:intergenic
AGAAGGGGTTGTTATGGAAC+AGG 0.385359 1_3:-56297949 None:intergenic
GTTGCTAGGAATACAATGTT+AGG 0.385672 1_3:+56298450 Msa0127080:five_prime_UTR
TGTGGGTGGATTTGTTAAAC+TGG 0.386432 1_3:+56298893 Msa0127080:five_prime_UTR
TCAAGCTCGTAAAAGCTATT+GGG 0.388699 1_3:-56300796 None:intergenic
GTGCCAGAAAACGTTACTAT+AGG 0.389850 1_3:-56302448 None:intergenic
AGAGTGTTCTAGGCTGGGGT+TGG 0.391496 1_3:-56298122 None:intergenic
AAGAACCACCAATTCGCTAT+TGG 0.400572 1_3:-56298475 None:intergenic
GGAATAAGAAGGGGTTGTTA+TGG 0.401637 1_3:-56297955 None:intergenic
CGGGGAAGAGTGTTCTAGGC+TGG 0.401981 1_3:-56298128 None:intergenic
GAGTGTTCTAGGCTGGGGTT+GGG 0.404490 1_3:-56298121 None:intergenic
AGAGTAGGGACTTTGAGTTC+AGG 0.404816 1_3:-56298165 None:intergenic
TAGCAAATATATTGACCATC+TGG 0.411722 1_3:-56299905 None:intergenic
GACAATATTCATTCATATAT+GGG 0.414266 1_3:-56302576 None:intergenic
ATGATGAATGATCAATCAAT+AGG 0.414369 1_3:+56302308 Msa0127080:five_prime_UTR
ATGTCCTTGAACCCTATTCC+AGG 0.418990 1_3:+56303423 Msa0127080:three_prime_UTR
GGAATGGAGGTGCGGCGAAA+AGG 0.419696 1_3:-56298046 None:intergenic
GAAGAATTGTTGTCAGTCTC+TGG 0.420560 1_3:+56300760 Msa0127080:five_prime_UTR
GGGGTTGGGCTTGGGCCTTA+GGG 0.425443 1_3:-56298107 None:intergenic
CATTCTGAATGCTAACCTTA+AGG 0.425518 1_3:-56302238 None:intergenic
GAATGGAGGTGCGGCGAAAA+GGG 0.427791 1_3:-56298045 None:intergenic
CGATAAAGCAGTTTCCAAAT+CGG 0.432609 1_3:+56298248 Msa0127080:five_prime_UTR
CTTTACGTTGTCCTTAATGA+AGG 0.432690 1_3:-56300638 None:intergenic
AGTAGGAGGGAGGAATAAGA+AGG 0.433949 1_3:-56297966 None:intergenic
CGAATTGGTGGTTCTTCCAT+TGG 0.436292 1_3:+56298482 Msa0127080:five_prime_UTR
GCTCTTGGAATTTGTTCTGT+TGG 0.439392 1_3:+56302811 Msa0127080:CDS
TGAGTTGGAGAATGAGAGTA+GGG 0.440641 1_3:-56298179 None:intergenic
TTCGTAAATTATTTGATGGT+GGG 0.440847 1_3:+56298772 Msa0127080:five_prime_UTR
GAAAGAAGGGAGAGGAAGGA+GGG 0.441173 1_3:-56297890 None:intergenic
CTTATTTATGGTGGTGGTGG+TGG 0.442147 1_3:+56298570 Msa0127080:five_prime_UTR
CATATGAGTTGCTAAAGAAA+GGG 0.444121 1_3:+56301690 Msa0127080:five_prime_UTR
GAGGTGTGGATAGCGAGAGA+AGG 0.445791 1_3:-56298023 None:intergenic
TTCAGGGCGTTTGTAACCGC+CGG 0.450932 1_3:-56298148 None:intergenic
ACCAAGATCAGGCGCAGAAT+AGG 0.452346 1_3:+56303191 Msa0127080:CDS
GCCGTTCTTATTGGTTATAG+TGG 0.454113 1_3:+56299167 Msa0127080:five_prime_UTR
CTAGATGGGTCGACGATCGC+AGG 0.455498 1_3:+56300838 Msa0127080:five_prime_UTR
GGGGAAGAGTGTTCTAGGCT+GGG 0.456730 1_3:-56298127 None:intergenic
CTTCGTAAATTATTTGATGG+TGG 0.456739 1_3:+56298771 Msa0127080:five_prime_UTR
GCAGAGTATAACAGAGGTTG+TGG 0.456855 1_3:+56298875 Msa0127080:five_prime_UTR
TTCTGAATTCTTGAGGTGGC+AGG 0.456958 1_3:-56301266 None:intergenic
TGATGGTGGGTTTGCAAATG+AGG 0.457041 1_3:+56298785 Msa0127080:five_prime_UTR
GAGTAGGGACTTTGAGTTCA+GGG 0.457331 1_3:-56298164 None:intergenic
GAGTTTGTTTCCTCCAAGAA+AGG 0.457846 1_3:-56301035 None:intergenic
GGGGAATGAAGATAGAAAGA+AGG 0.458157 1_3:-56297904 None:intergenic
ATACCTCACTTCCAGTTAAA+GGG 0.459106 1_3:-56300175 None:intergenic
TGCCAGAAAACGTTACTATA+GGG 0.463119 1_3:-56302447 None:intergenic
GTTAGGTTCCAATAGCGAAT+TGG 0.463663 1_3:+56298467 Msa0127080:five_prime_UTR
TTCTCGCCATTTCTTCCCTA+AGG 0.464182 1_3:+56298092 Msa0127080:five_prime_UTR
TTGCTTCGTAAATTATTTGA+TGG 0.465054 1_3:+56298768 Msa0127080:five_prime_UTR
GATAGAAAGAAGGGAGAGGA+AGG 0.467673 1_3:-56297894 None:intergenic
TATAAAGAAAGCTGCACCTC+TGG 0.469112 1_3:+56298977 Msa0127080:five_prime_UTR
ACATATGAGTTGCTAAAGAA+AGG 0.469855 1_3:+56301689 Msa0127080:five_prime_UTR
ATGTCTAAGATATTGCCTTA+AGG 0.470286 1_3:+56302223 Msa0127080:five_prime_UTR
CTCAACAAATTCTGGTTCCT+GGG 0.470832 1_3:+56299206 Msa0127080:five_prime_UTR
GGGAGGGTGAAGAAGGGAGT+AGG 0.471511 1_3:-56297983 None:intergenic
AGAAAGAAGGGAGAGGAAGG+AGG 0.471855 1_3:-56297891 None:intergenic
ATAGGTTTGTTTAAAAGTTG+AGG 0.472840 1_3:+56302326 Msa0127080:five_prime_UTR
AATGTGATCTCATTCGTTGT+TGG 0.473194 1_3:-56299833 None:intergenic
ATGGTAGGGAGGGTGAAGAA+GGG 0.480582 1_3:-56297989 None:intergenic
TTTCTTATTTATGGTGGTGG+TGG 0.481098 1_3:+56298567 Msa0127080:five_prime_UTR
TTGAGTTGGAGAATGAGAGT+AGG 0.481221 1_3:-56298180 None:intergenic
TTGGAATTTGTTCTGTTGGC+GGG 0.483032 1_3:+56302815 Msa0127080:CDS
AGAAACATTATTGGAAGTGA+TGG 0.485938 1_3:-56298073 None:intergenic
CACATGAAGCCAACGATAAG+TGG 0.486698 1_3:-56302422 None:intergenic
CGAATTTCCCATCTCGGAGG+CGG 0.487689 1_3:+56303041 Msa0127080:CDS
GGGAATGAAGATAGAAAGAA+GGG 0.487751 1_3:-56297903 None:intergenic
GGGTGAAGAAGGGAGTAGGA+GGG 0.489166 1_3:-56297979 None:intergenic
ATTTCCTGGAATAGGGTTCA+AGG 0.489984 1_3:-56303427 None:intergenic
GAGAAAGATATCTCAAAGAC+GGG 0.490849 1_3:+56299804 Msa0127080:five_prime_UTR
TCATTCTGTTATTGATGCAA+TGG 0.495631 1_3:+56303325 Msa0127080:three_prime_UTR
TGGCAAACCTTACCAAGATC+AGG 0.496944 1_3:+56303180 Msa0127080:CDS
TCTTGGTCAACTAGGAGTGC+TGG 0.497316 1_3:+56302733 Msa0127080:CDS
ATCACACGCCGCCTCCGAGA+TGG 0.500627 1_3:-56303049 None:intergenic
GATTGGACACAGAAAATACT+TGG 0.500788 1_3:+56301551 Msa0127080:intron
CGTAAAGAGATTGTTGAATA+CGG 0.501703 1_3:+56300654 Msa0127080:five_prime_UTR
CTTGGGCCTTAGGGAAGAAA+TGG 0.502374 1_3:-56298098 None:intergenic
TTAGGGACTCTTGGTCAACT+AGG 0.502895 1_3:+56302725 Msa0127080:CDS
TTCTGCGCCTGATCTTGGTA+AGG 0.503435 1_3:-56303187 None:intergenic
TGAAGAAGGGAGTAGGAGGG+AGG 0.504989 1_3:-56297976 None:intergenic
CTTAAACTTGAAACACCTGT+TGG 0.505262 1_3:+56300877 Msa0127080:five_prime_UTR
CTTGGAATTTGTTCTGTTGG+CGG 0.506769 1_3:+56302814 Msa0127080:CDS
AGTCTGTCTGCAATTCCAAC+AGG 0.507009 1_3:-56300892 None:intergenic
CTATTTCGAATTTCCCATCT+CGG 0.507858 1_3:+56303035 Msa0127080:CDS
TCAGGGCGTTTGTAACCGCC+GGG 0.508845 1_3:-56298147 None:intergenic
TTACTTGCTTCTGGTGCTAG+TGG 0.511768 1_3:+56298702 Msa0127080:five_prime_UTR
TTCTTCGTTATTCACAGCAA+TGG 0.512194 1_3:+56300309 Msa0127080:five_prime_UTR
GAATCTGATCGGAGTTGAGT+TGG 0.513592 1_3:-56298194 None:intergenic
ATTTGTTAAACTGGAAGATA+GGG 0.520690 1_3:+56298902 Msa0127080:five_prime_UTR
TTTGTATTGCCACTTATCGT+TGG 0.524728 1_3:+56302413 Msa0127080:five_prime_UTR
TACCATGGATTTGATTTGAA+GGG 0.526464 1_3:-56297925 None:intergenic
AAAGCAGTTTCCAAATCGGT+TGG 0.526653 1_3:+56298252 Msa0127080:five_prime_UTR
AAAATTGTTTAGTGACATAG+TGG 0.529094 1_3:-56302672 None:intergenic
GTACCATGGATTTGATTTGA+AGG 0.530377 1_3:-56297926 None:intergenic
GTGTGGATAGCGAGAGAAGG+GGG 0.530632 1_3:-56298020 None:intergenic
AAAATGAGAGCCTTTCTTGG+AGG 0.531067 1_3:+56301025 Msa0127080:five_prime_UTR
GTAGGAGGGAGGAATAAGAA+GGG 0.531691 1_3:-56297965 None:intergenic
TGGGTCGACGATCGCAGGGA+TGG 0.531906 1_3:+56300843 Msa0127080:five_prime_UTR
AGGTTCCAATAGCGAATTGG+TGG 0.531924 1_3:+56298470 Msa0127080:five_prime_UTR
CTGGTTCCTGGGATATACAT+TGG 0.532519 1_3:+56299217 Msa0127080:five_prime_UTR
TCACACGCCGCCTCCGAGAT+GGG 0.532753 1_3:-56303048 None:intergenic
TATTGCAGCCAAATCCTGCT+TGG 0.535558 1_3:-56300959 None:intergenic
CAGAGTATAACAGAGGTTGT+GGG 0.536041 1_3:+56298876 Msa0127080:five_prime_UTR
TTCTTCAAGTTCATTCGCCA+AGG 0.537920 1_3:-56303098 None:intergenic
TGGAAGTGATGGGAGAGGAA+TGG 0.537999 1_3:-56298062 None:intergenic
AGGAAGGAGGGAGATATGGA+TGG 0.538742 1_3:-56297878 None:intergenic
AAATTAGTCAATGAGAGTAA+TGG 0.541323 1_3:+56298849 Msa0127080:five_prime_UTR
GGTGTAAGGGATGGTAGGGA+GGG 0.548799 1_3:-56297999 None:intergenic
AACAGTAGGAAGACCTTGAT+CGG 0.550869 1_3:-56298427 None:intergenic
CCAACAAGGGAGAATATACA+AGG 0.551313 1_3:+56301607 Msa0127080:five_prime_UTR
GTCTTCCTACTGTTGTTGCT+AGG 0.559275 1_3:+56298436 Msa0127080:five_prime_UTR
TGAAATATCCCAAAGAACTC+AGG 0.564402 1_3:-56303305 None:intergenic
CTAAAGAAAGGGGATCAAGC+TGG 0.564620 1_3:+56301701 Msa0127080:five_prime_UTR
TGGAGGTGCGGCGAAAAGGG+AGG 0.564638 1_3:-56298042 None:intergenic
GTCCCTAAAATCTACACAGA+AGG 0.564823 1_3:-56302710 None:intergenic
ATCCACTAAATCACGTGTTG+TGG 0.567456 1_3:+56301163 Msa0127080:five_prime_UTR
GAAACATTATTGGAAGTGAT+GGG 0.567733 1_3:-56298072 None:intergenic
ACTTCTCTAAGAATTGGAGC+TGG 0.567788 1_3:-56299932 None:intergenic
AGGCCATGGCAAATTAAAAG+TGG 0.567870 1_3:-56303355 None:intergenic
TAAGACGCTGTTGTCTCTGA+AGG 0.569012 1_3:-56300097 None:intergenic
GAGGCGGCGTGTGATAGATA+AGG 0.570406 1_3:+56303057 Msa0127080:CDS
TATGTCATTCTGAATTCTTG+AGG 0.570562 1_3:-56301273 None:intergenic
GGGAAGAGTGTTCTAGGCTG+GGG 0.574285 1_3:-56298126 None:intergenic
TCTTGCTTAAAGAGAGGCCA+TGG 0.574910 1_3:-56303369 None:intergenic
AGGAGGGAGATATGGATGGA+TGG 0.575219 1_3:-56297874 None:intergenic
GTGTGATAGATAAGGTGAAA+AGG 0.575343 1_3:+56303065 Msa0127080:CDS
TAGTGACATAGTGGTGGTGG+TGG 0.575585 1_3:-56302663 None:intergenic
ATCTGTACTGCAAACCACAT+TGG 0.578353 1_3:+56302777 Msa0127080:CDS
GTTTAGTGACATAGTGGTGG+TGG 0.579472 1_3:-56302666 None:intergenic
TGAAGATAGAAAGAAGGGAG+AGG 0.581729 1_3:-56297898 None:intergenic
GAGGAAACAAACTCTATCCA+TGG 0.582861 1_3:+56301044 Msa0127080:five_prime_UTR
GGTGTGGATAGCGAGAGAAG+GGG 0.584107 1_3:-56298021 None:intergenic
CTCTAAGAATTGGAGCTGGA+AGG 0.584112 1_3:-56299928 None:intergenic
ATGACAATTGTTGATACACC+TGG 0.584916 1_3:+56300062 Msa0127080:five_prime_UTR
GAAAAGGAAAGCAGATACCT+TGG 0.585138 1_3:+56303081 Msa0127080:CDS
GGAGAAAGATATCTCAAAGA+CGG 0.586536 1_3:+56299803 Msa0127080:five_prime_UTR
GTTAATAGAAATGGAGAGGT+CGG 0.587179 1_3:+56298932 Msa0127080:five_prime_UTR
TGTTATGGAACAGGGTACCA+TGG 0.587563 1_3:-56297940 None:intergenic
TGGCCTCTCTTTAAGCAAGA+AGG 0.588310 1_3:+56303372 Msa0127080:three_prime_UTR
CAGCCTAGAACACTCTTCCC+CGG 0.588937 1_3:+56298129 Msa0127080:five_prime_UTR
AACTTGAAGAAGCCATGAAG+AGG 0.589676 1_3:+56303110 Msa0127080:CDS
ATCGGAGAGTAAAACGCCAC+TGG 0.590084 1_3:-56298409 None:intergenic
CTAATACCAATGTATATCCC+AGG 0.590992 1_3:-56299223 None:intergenic
ACCATGGATTTGATTTGAAG+GGG 0.592880 1_3:-56297924 None:intergenic
AGACTATCGATATGCCAAGC+AGG 0.596164 1_3:+56300945 Msa0127080:five_prime_UTR
AAGTGATGGGAGAGGAATGG+AGG 0.597078 1_3:-56298059 None:intergenic
CATGGCAAATTAAAAGTGGA+TGG 0.598743 1_3:-56303351 None:intergenic
GTTGAGTTTCCCGAAACTAG+AGG 0.599289 1_3:-56300737 None:intergenic
GATGGATGACTCTCCGTCAG+TGG 0.599652 1_3:-56297856 None:intergenic
ACTTGAAGAAGCCATGAAGA+GGG 0.600088 1_3:+56303111 Msa0127080:CDS
AACAGTTAATAGAAATGGAG+AGG 0.600267 1_3:+56298928 Msa0127080:five_prime_UTR
ATTATTGGAAGTGATGGGAG+AGG 0.603910 1_3:-56298067 None:intergenic
AACAACTCAGATTCCACTGA+CGG 0.605575 1_3:+56297843 None:intergenic
GTGCGGCGAAAAGGGAGGTG+TGG 0.608912 1_3:-56298037 None:intergenic
TAGGAGGGAGGAATAAGAAG+GGG 0.608955 1_3:-56297964 None:intergenic
TAGATGGGTCGACGATCGCA+GGG 0.610773 1_3:+56300839 Msa0127080:five_prime_UTR
TCGCAGGGATGGATAGAATG+AGG 0.611057 1_3:+56300854 Msa0127080:five_prime_UTR
TGTACAAATCTAGCGACCAA+TGG 0.613025 1_3:-56298498 None:intergenic
ACCACTATAACCAATAAGAA+CGG 0.613617 1_3:-56299168 None:intergenic
GCGCCTTCTTGCTTAAAGAG+AGG 0.614736 1_3:-56303375 None:intergenic
AAATATTATATTTACCGCTG+AGG 0.618759 1_3:-56302607 None:intergenic
CCATGGATTTGATTTGAAGG+GGG 0.619733 1_3:-56297923 None:intergenic
GTCATTCTGAATTCTTGAGG+TGG 0.619878 1_3:-56301270 None:intergenic
ATATGAGTTGCTAAAGAAAG+GGG 0.621951 1_3:+56301691 Msa0127080:five_prime_UTR
AGAGCAGATCGAGCAGACAC+AGG 0.622073 1_3:-56300694 None:intergenic
GCCACGTGTAAGAATCTGAT+CGG 0.628623 1_3:-56298205 None:intergenic
ACTTAATTGTTGATCAGACA+AGG 0.631148 1_3:-56302505 None:intergenic
GCTGCCGCTGCTGTTACCAG+TGG 0.632649 1_3:+56298393 Msa0127080:five_prime_UTR
ACAGCAATGGAAGAAGAAAG+TGG 0.636739 1_3:+56300322 Msa0127080:five_prime_UTR
CGCTGTGAAAGGTATCCAGA+TGG 0.637277 1_3:+56299890 Msa0127080:five_prime_UTR
ATGGGAGAGGAATGGAGGTG+CGG 0.637495 1_3:-56298054 None:intergenic
ACCTGAACAGATGACACAGA+AGG 0.647984 1_3:-56301302 None:intergenic
GTAAATGCATCCAAATCTGA+AGG 0.648586 1_3:+56298537 Msa0127080:five_prime_UTR
GGTGATCTATGATGCTAGAG+AGG 0.651814 1_3:+56302267 Msa0127080:five_prime_UTR
GAGAAACTTGTCATGCGATG+AGG 0.653040 1_3:+56298671 Msa0127080:five_prime_UTR
GTATTCCTAGCAACAACAGT+AGG 0.653665 1_3:-56298441 None:intergenic
AGTCTAACAAAGACTAAACA+GGG 0.653693 1_3:-56302547 None:intergenic
GAGACAACAGCGTCTTACAG+AGG 0.659308 1_3:+56300103 Msa0127080:five_prime_UTR
TGCAAATGAGGAGAGAACAC+TGG 0.663495 1_3:+56298797 Msa0127080:five_prime_UTR
TTTATCGATCAAGTCTAGTG+CGG 0.664777 1_3:-56298232 None:intergenic
AGTATAACAGAGGTTGTGGG+TGG 0.666437 1_3:+56298879 Msa0127080:five_prime_UTR
GTGTAACTTGATATATGCAA+TGG 0.666867 1_3:+56303479 Msa0127080:three_prime_UTR
CAAGTTTCTCCCCACAAACG+AGG 0.670479 1_3:-56298658 None:intergenic
TTTCGAATTTCCCATCTCGG+AGG 0.670630 1_3:+56303038 Msa0127080:CDS
AACGCCACTGGTAACAGCAG+CGG 0.672510 1_3:-56298397 None:intergenic
CTAACTAGTAATGAACAAAG+TGG 0.676424 1_3:+56298285 Msa0127080:five_prime_UTR
TGGTTTGCAGAGTATAACAG+AGG 0.684199 1_3:+56298869 Msa0127080:five_prime_UTR
AAAAGAAGCAAGTCTGCACG+AGG 0.688131 1_3:-56300134 None:intergenic
TCGCCCTTTAACTGGAAGTG+AGG 0.689500 1_3:+56300172 Msa0127080:five_prime_UTR
GAAGGGGTTGTTATGGAACA+GGG 0.689780 1_3:-56297948 None:intergenic
ACTAGTAATGAACAAAGTGG+TGG 0.690621 1_3:+56298288 Msa0127080:five_prime_UTR
AGCAAGAAGATCTTCCAATG+TGG 0.693565 1_3:-56302791 None:intergenic
GCAACCTGAATAAATCACAC+TGG 0.695359 1_3:-56302364 None:intergenic
ATTGTTTAGTGACATAGTGG+TGG 0.696243 1_3:-56302669 None:intergenic
CATTTATCAGAATAATCATG+AGG 0.697867 1_3:+56300367 Msa0127080:five_prime_UTR
TCCGATCAGATTCTTACACG+TGG 0.704174 1_3:+56298204 Msa0127080:five_prime_UTR
TTTGCCAATGACTCTCACAA+AGG 0.714611 1_3:-56303164 None:intergenic
CAGGGCGTTTGTAACCGCCG+GGG 0.722210 1_3:-56298146 None:intergenic
ATTGTCTGAGTCTTCCTCAG+CGG 0.731756 1_3:+56302593 Msa0127080:five_prime_UTR
AGAAAGATATCTCAAAGACG+GGG 0.744416 1_3:+56299805 Msa0127080:five_prime_UTR
CCTAGAACACTCTTCCCCGG+CGG 0.758498 1_3:+56298132 Msa0127080:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAGTAAACATTATTTTAAA+AGG + chr1_3:56303561-56303580 Msa0127080:three_prime_UTR 10.0%
!! AAAGTTAATAAATAGTAATG+TGG - chr1_3:56299636-56299655 None:intergenic 15.0%
!! ATTGTACATTAAACAAATAT+TGG + chr1_3:56300504-56300523 Msa0127080:intron 15.0%
!! TTGTACATTAAACAAATATT+GGG + chr1_3:56300505-56300524 Msa0127080:intron 15.0%
!!! AGTTTTTACATTATTTTACA+AGG - chr1_3:56301811-56301830 None:intergenic 15.0%
!!! TTATATGCTATTTTACTTAT+GGG - chr1_3:56302171-56302190 None:intergenic 15.0%
!!! TTTATATGCTATTTTACTTA+TGG - chr1_3:56302172-56302191 None:intergenic 15.0%
!! ATAGTAATGAAATAATATCT+AGG + chr1_3:56302940-56302959 Msa0127080:intron 15.0%
!!! TAAAAGGTTAATTAAGTTTT+TGG + chr1_3:56303577-56303596 Msa0127080:three_prime_UTR 15.0%
!! GTTAAAACTAGTTAACAAAT+AGG + chr1_3:56299285-56299304 Msa0127080:intron 20.0%
!! TTCCTATATTGTTATACTTA+TGG + chr1_3:56299519-56299538 Msa0127080:intron 20.0%
!! TTCCATAAGTATAACAATAT+AGG - chr1_3:56299524-56299543 None:intergenic 20.0%
!!! TTAGTCCTTTTTTTTTAGTA+TGG + chr1_3:56300200-56300219 Msa0127080:intron 20.0%
!!! TAGTCCTTTTTTTTTAGTAT+GGG + chr1_3:56300201-56300220 Msa0127080:intron 20.0%
!! TTATGTTTCATGATTCATAT+TGG + chr1_3:56300395-56300414 Msa0127080:intron 20.0%
!! TATGTTTCATGATTCATATT+GGG + chr1_3:56300396-56300415 Msa0127080:intron 20.0%
!! ATTTGTTTAATGTACAATAG+AGG - chr1_3:56300502-56300521 None:intergenic 20.0%
!! ATATATAACATAAGACTACT+TGG - chr1_3:56300586-56300605 None:intergenic 20.0%
!!! TTTTTATATAGCTTTCTAGA+TGG + chr1_3:56300823-56300842 Msa0127080:five_prime_UTR 20.0%
!!! TTTTATATAGCTTTCTAGAT+GGG + chr1_3:56300824-56300843 Msa0127080:five_prime_UTR 20.0%
!!! AAATGATTTTGCATTGAATA+TGG + chr1_3:56301002-56301021 Msa0127080:five_prime_UTR 20.0%
!! TTAAGAACATACTAATTAAG+AGG - chr1_3:56301115-56301134 None:intergenic 20.0%
!!! ATGTTTTGCTTAAATGTTTT+TGG + chr1_3:56301526-56301545 Msa0127080:intron 20.0%
!!! GTTTTATATAAGTTTGGTTT+CGG - chr1_3:56302081-56302100 None:intergenic 20.0%
!! GACAATATTCATTCATATAT+GGG - chr1_3:56302579-56302598 None:intergenic 20.0%
!! AGACAATATTCATTCATATA+TGG - chr1_3:56302580-56302599 None:intergenic 20.0%
!! ATTTCATTACTATCTCTTAA+AGG - chr1_3:56302933-56302952 None:intergenic 20.0%
!! TTATATGATTAATGATTTCC+TGG - chr1_3:56303444-56303463 None:intergenic 20.0%
!!! TGATTTGGAACTTTTAAATC+AGG + chr1_3:56298593-56298612 Msa0127080:five_prime_UTR 25.0%
!! GAACTTTTAAATCAGGAAAT+TGG + chr1_3:56298600-56298619 Msa0127080:five_prime_UTR 25.0%
!!! TTACTAGTTTGGAAAGTTTT+GGG + chr1_3:56298730-56298749 Msa0127080:five_prime_UTR 25.0%
! TTGCTTCGTAAATTATTTGA+TGG + chr1_3:56298768-56298787 Msa0127080:five_prime_UTR 25.0%
!! TTCGTAAATTATTTGATGGT+GGG + chr1_3:56298772-56298791 Msa0127080:five_prime_UTR 25.0%
! AAATTAGTCAATGAGAGTAA+TGG + chr1_3:56298849-56298868 Msa0127080:five_prime_UTR 25.0%
!! ATTTGTTAAACTGGAAGATA+GGG + chr1_3:56298902-56298921 Msa0127080:five_prime_UTR 25.0%
! ACACAAAGTAAACAATATAC+TGG - chr1_3:56299073-56299092 None:intergenic 25.0%
! TTGTTTACTTTGTGTTGAAT+TGG + chr1_3:56299078-56299097 Msa0127080:intron 25.0%
! AACTACTTTGAACAATATGT+TGG + chr1_3:56299476-56299495 Msa0127080:intron 25.0%
! ACTACTTTGAACAATATGTT+GGG + chr1_3:56299477-56299496 Msa0127080:intron 25.0%
! ATTTATTTGACTCTATTGTC+AGG + chr1_3:56299736-56299755 Msa0127080:intron 25.0%
! TTTATTTGACTCTATTGTCA+GGG + chr1_3:56299737-56299756 Msa0127080:intron 25.0%
!!! TTAGTTTTCTCCTTATGTTT+TGG + chr1_3:56299969-56299988 Msa0127080:intron 25.0%
! CAAACAGAAATTGTAATCAA+GGG - chr1_3:56299999-56300018 None:intergenic 25.0%
!!! AGTCCTTTTTTTTTAGTATG+GGG + chr1_3:56300202-56300221 Msa0127080:intron 25.0%
!!! GTTGTTTTATGTTCTTTTTC+AGG + chr1_3:56300280-56300299 Msa0127080:intron 25.0%
! CATTTATCAGAATAATCATG+AGG + chr1_3:56300367-56300386 Msa0127080:five_prime_UTR 25.0%
!! GTTCATAATTTTTGAATGTC+AGG + chr1_3:56301077-56301096 Msa0127080:intron 25.0%
! AGTATGTTCTTAAATTGCAA+TGG + chr1_3:56301122-56301141 Msa0127080:intron 25.0%
!! GTTGTATCATATGTTTTCAA+AGG + chr1_3:56301227-56301246 Msa0127080:five_prime_UTR 25.0%
! AAAATAGTAAACATGACTAC+AGG - chr1_3:56301369-56301388 None:intergenic 25.0%
! TTTAATCTCGCATTAGTATT+TGG - chr1_3:56301472-56301491 None:intergenic 25.0%
! ACATTTAAGCAAAACATGAA+TGG - chr1_3:56301523-56301542 None:intergenic 25.0%
!!! CTTAAATGTTTTTGGTTGAT+TGG + chr1_3:56301534-56301553 Msa0127080:intron 25.0%
!! ACTATTTTCATGAATCAATG+AGG - chr1_3:56301654-56301673 None:intergenic 25.0%
!! TTCTCATGATTTGAAATCAA+AGG + chr1_3:56301915-56301934 Msa0127080:intron 25.0%
! AACCAAACTTATATAAAACC+AGG + chr1_3:56302082-56302101 Msa0127080:intron 25.0%
! ACCAAACTTATATAAAACCA+GGG + chr1_3:56302083-56302102 Msa0127080:intron 25.0%
! TATATGTGTAACAAACTTTC+CGG + chr1_3:56302108-56302127 Msa0127080:intron 25.0%
!! AAACTTCCATTTAAAATGTC+CGG - chr1_3:56302130-56302149 None:intergenic 25.0%
!! ATTGATCATTCATCATTTTG+AGG - chr1_3:56302304-56302323 None:intergenic 25.0%
! ATGATGAATGATCAATCAAT+AGG + chr1_3:56302308-56302327 Msa0127080:five_prime_UTR 25.0%
!! ATAGGTTTGTTTAAAAGTTG+AGG + chr1_3:56302326-56302345 Msa0127080:five_prime_UTR 25.0%
! AAATATTATATTTACCGCTG+AGG - chr1_3:56302610-56302629 None:intergenic 25.0%
! AAAATTGTTTAGTGACATAG+TGG - chr1_3:56302675-56302694 None:intergenic 25.0%
!! TGCATTTTCAAATACAACTT+GGG - chr1_3:56302876-56302895 None:intergenic 25.0%
!! ATGCATTTTCAAATACAACT+TGG - chr1_3:56302877-56302896 None:intergenic 25.0%
! ATTAATGATTTCCTGGAATA+GGG - chr1_3:56303437-56303456 None:intergenic 25.0%
!! TACCATGGATTTGATTTGAA+GGG - chr1_3:56297928-56297947 None:intergenic 30.0%
GAAACATTATTGGAAGTGAT+GGG - chr1_3:56298075-56298094 None:intergenic 30.0%
AGAAACATTATTGGAAGTGA+TGG - chr1_3:56298076-56298095 None:intergenic 30.0%
CTAACTAGTAATGAACAAAG+TGG + chr1_3:56298285-56298304 Msa0127080:five_prime_UTR 30.0%
!!! GGTGCTGATTTTCTTATTTA+TGG + chr1_3:56298558-56298577 Msa0127080:five_prime_UTR 30.0%
!! GCTGATTTTCTTATTTATGG+TGG + chr1_3:56298561-56298580 Msa0127080:five_prime_UTR 30.0%
!! GATTTTCTTATTTATGGTGG+TGG + chr1_3:56298564-56298583 Msa0127080:five_prime_UTR 30.0%
!!! TAGTGGTTTTGTTACTAGTT+TGG + chr1_3:56298719-56298738 Msa0127080:five_prime_UTR 30.0%
!! GTTACTAGTTTGGAAAGTTT+TGG + chr1_3:56298729-56298748 Msa0127080:five_prime_UTR 30.0%
CTTCGTAAATTATTTGATGG+TGG + chr1_3:56298771-56298790 Msa0127080:five_prime_UTR 30.0%
!! GATTTGTTAAACTGGAAGAT+AGG + chr1_3:56298901-56298920 Msa0127080:five_prime_UTR 30.0%
GGAGAAACAGTTAATAGAAA+TGG + chr1_3:56298923-56298942 Msa0127080:five_prime_UTR 30.0%
AACAGTTAATAGAAATGGAG+AGG + chr1_3:56298928-56298947 Msa0127080:five_prime_UTR 30.0%
!! GATCTTTTAACTGAAACAGT+TGG + chr1_3:56299001-56299020 Msa0127080:intron 30.0%
ACTTTGTGTTGAATTGGAAT+TGG + chr1_3:56299084-56299103 Msa0127080:intron 30.0%
! AATTGGTTTCAAATGACAGA+TGG + chr1_3:56299101-56299120 Msa0127080:intron 30.0%
ACCACTATAACCAATAAGAA+CGG - chr1_3:56299171-56299190 None:intergenic 30.0%
CTCTAGTAAATGCTTATACA+TGG - chr1_3:56299377-56299396 None:intergenic 30.0%
!! TTTACTAGAGTGTTGATTCA+TGG + chr1_3:56299387-56299406 Msa0127080:intron 30.0%
!! AACAATATGTTGGGTTAGTT+GGG + chr1_3:56299486-56299505 Msa0127080:intron 30.0%
TTATTTGACTCTATTGTCAG+GGG + chr1_3:56299738-56299757 Msa0127080:intron 30.0%
!!! AGCGTTGTTTTTCAATATCT+AGG - chr1_3:56299874-56299893 None:intergenic 30.0%
TAGCAAATATATTGACCATC+TGG - chr1_3:56299908-56299927 None:intergenic 30.0%
! TGACTTACTTCTCTAAGAAT+TGG - chr1_3:56299941-56299960 None:intergenic 30.0%
GCAAACAGAAATTGTAATCA+AGG - chr1_3:56300000-56300019 None:intergenic 30.0%
! AATTGTCATCTGTTTTCAGA+AGG - chr1_3:56300051-56300070 None:intergenic 30.0%
ATGCCCCATACTAAAAAAAA+AGG - chr1_3:56300208-56300227 None:intergenic 30.0%
AGCTAAAGACAATAACATTG+GGG - chr1_3:56300536-56300555 None:intergenic 30.0%
CAGCTAAAGACAATAACATT+GGG - chr1_3:56300537-56300556 None:intergenic 30.0%
ACAGCTAAAGACAATAACAT+TGG - chr1_3:56300538-56300557 None:intergenic 30.0%
!! CTGTTCTTTTGTACTGATAT+AGG + chr1_3:56300554-56300573 Msa0127080:intron 30.0%
CGTAAAGAGATTGTTGAATA+CGG + chr1_3:56300654-56300673 Msa0127080:five_prime_UTR 30.0%
TATGAACTTGTAACATACCA+TGG - chr1_3:56301064-56301083 None:intergenic 30.0%
TATGTCATTCTGAATTCTTG+AGG - chr1_3:56301276-56301295 None:intergenic 30.0%
TGATTTATTCAACCATAAGC+TGG + chr1_3:56301404-56301423 Msa0127080:intron 30.0%
TACTTGGAGATTACGAAAAT+TGG + chr1_3:56301567-56301586 Msa0127080:five_prime_UTR 30.0%
ACATATGAGTTGCTAAAGAA+AGG + chr1_3:56301689-56301708 Msa0127080:five_prime_UTR 30.0%
CATATGAGTTGCTAAAGAAA+GGG + chr1_3:56301690-56301709 Msa0127080:five_prime_UTR 30.0%
ATATGAGTTGCTAAAGAAAG+GGG + chr1_3:56301691-56301710 Msa0127080:five_prime_UTR 30.0%
ATGTAAAAACTCTTCTCTTC+TGG + chr1_3:56301820-56301839 Msa0127080:intron 30.0%
TCAGTTGAACAACTAACTAA+TGG + chr1_3:56301990-56302009 Msa0127080:intron 30.0%
TGAACAACTAACTAATGGAA+TGG + chr1_3:56301995-56302014 Msa0127080:intron 30.0%
!!! ACCCTGGTTTTATATAAGTT+TGG - chr1_3:56302087-56302106 None:intergenic 30.0%
! AACTTTCCGGACATTTTAAA+TGG + chr1_3:56302121-56302140 Msa0127080:intron 30.0%
! ATGTCTAAGATATTGCCTTA+AGG + chr1_3:56302223-56302242 Msa0127080:five_prime_UTR 30.0%
TTAGCATTCAGAATGATTTC+TGG + chr1_3:56302246-56302265 Msa0127080:five_prime_UTR 30.0%
ATAACCAGTGTGATTTATTC+AGG + chr1_3:56302360-56302379 Msa0127080:five_prime_UTR 30.0%
ACTTAATTGTTGATCAGACA+AGG - chr1_3:56302508-56302527 None:intergenic 30.0%
AGTCTAACAAAGACTAAACA+GGG - chr1_3:56302550-56302569 None:intergenic 30.0%
AAGTCTAACAAAGACTAAAC+AGG - chr1_3:56302551-56302570 None:intergenic 30.0%
! TTCCTTCTGTGTAGATTTTA+GGG + chr1_3:56302708-56302727 Msa0127080:CDS 30.0%
! GCATTTTCAAATACAACTTG+GGG - chr1_3:56302875-56302894 None:intergenic 30.0%
!!! AGTCGATATTTGTTTTACTC+AGG + chr1_3:56303005-56303024 Msa0127080:intron 30.0%
TCATTCTGTTATTGATGCAA+TGG + chr1_3:56303325-56303344 Msa0127080:three_prime_UTR 30.0%
GATTAATGATTTCCTGGAAT+AGG - chr1_3:56303438-56303457 None:intergenic 30.0%
GTGTAACTTGATATATGCAA+TGG + chr1_3:56303479-56303498 Msa0127080:three_prime_UTR 30.0%
GGGAATGAAGATAGAAAGAA+GGG - chr1_3:56297906-56297925 None:intergenic 35.0%
!! ACCATGGATTTGATTTGAAG+GGG - chr1_3:56297927-56297946 None:intergenic 35.0%
!! GTACCATGGATTTGATTTGA+AGG - chr1_3:56297929-56297948 None:intergenic 35.0%
GAAATGGCGAGAAACATTAT+TGG - chr1_3:56298085-56298104 None:intergenic 35.0%
TTTATCGATCAAGTCTAGTG+CGG - chr1_3:56298235-56298254 None:intergenic 35.0%
CGATAAAGCAGTTTCCAAAT+CGG + chr1_3:56298248-56298267 Msa0127080:five_prime_UTR 35.0%
AATCACAATTCCAACCGATT+TGG - chr1_3:56298265-56298284 None:intergenic 35.0%
ACTAGTAATGAACAAAGTGG+TGG + chr1_3:56298288-56298307 Msa0127080:five_prime_UTR 35.0%
GTTGCTAGGAATACAATGTT+AGG + chr1_3:56298450-56298469 Msa0127080:five_prime_UTR 35.0%
GTAAATGCATCCAAATCTGA+AGG + chr1_3:56298537-56298556 Msa0127080:five_prime_UTR 35.0%
AAAATCAGCACCTTCAGATT+TGG - chr1_3:56298550-56298569 None:intergenic 35.0%
!! TTTCTTATTTATGGTGGTGG+TGG + chr1_3:56298567-56298586 Msa0127080:five_prime_UTR 35.0%
GTTAATAGAAATGGAGAGGT+CGG + chr1_3:56298932-56298951 Msa0127080:five_prime_UTR 35.0%
TTCAGTTAAAAGATCACCAG+AGG - chr1_3:56298996-56299015 None:intergenic 35.0%
TGCTGAATCTCAACAAATTC+TGG + chr1_3:56299198-56299217 Msa0127080:five_prime_UTR 35.0%
CTAATACCAATGTATATCCC+AGG - chr1_3:56299226-56299245 None:intergenic 35.0%
CAAATAGGTGCTCTTTATTG+TGG + chr1_3:56299300-56299319 Msa0127080:intron 35.0%
GTATACTTACAGTGAGTAGT+TGG + chr1_3:56299409-56299428 Msa0127080:intron 35.0%
!! GAACAATATGTTGGGTTAGT+TGG + chr1_3:56299485-56299504 Msa0127080:intron 35.0%
! ATGAGTATTGTCAGCTATTG+CGG - chr1_3:56299558-56299577 None:intergenic 35.0%
TAGCTGACAATACTCATCAT+AGG + chr1_3:56299561-56299580 Msa0127080:intron 35.0%
AACTTTCCAACTTTCACCTT+AGG + chr1_3:56299584-56299603 Msa0127080:intron 35.0%
TCAGATAACTACTCAACCTA+AGG - chr1_3:56299603-56299622 None:intergenic 35.0%
TTTCTGTCTCACAAAGCAAT+TGG + chr1_3:56299654-56299673 Msa0127080:intron 35.0%
TATTTGACTCTATTGTCAGG+GGG + chr1_3:56299739-56299758 Msa0127080:intron 35.0%
GGAGAAAGATATCTCAAAGA+CGG + chr1_3:56299803-56299822 Msa0127080:five_prime_UTR 35.0%
GAGAAAGATATCTCAAAGAC+GGG + chr1_3:56299804-56299823 Msa0127080:five_prime_UTR 35.0%
AGAAAGATATCTCAAAGACG+GGG + chr1_3:56299805-56299824 Msa0127080:five_prime_UTR 35.0%
AATGTGATCTCATTCGTTGT+TGG - chr1_3:56299836-56299855 None:intergenic 35.0%
TTGAAAAACAACGCTGTGAA+AGG + chr1_3:56299879-56299898 Msa0127080:five_prime_UTR 35.0%
CAATTTCTGTTTGCAATTCG+TGG + chr1_3:56300006-56300025 Msa0127080:intron 35.0%
ATGACAATTGTTGATACACC+TGG + chr1_3:56300062-56300081 Msa0127080:five_prime_UTR 35.0%
TGAAGGATTACATTAGTTCC+AGG - chr1_3:56300083-56300102 None:intergenic 35.0%
ATACCTCACTTCCAGTTAAA+GGG - chr1_3:56300178-56300197 None:intergenic 35.0%
TTCTTCGTTATTCACAGCAA+TGG + chr1_3:56300309-56300328 Msa0127080:five_prime_UTR 35.0%
TAGATCAATCCTAGAAGCTT+CGG - chr1_3:56300427-56300446 None:intergenic 35.0%
CTTTACGTTGTCCTTAATGA+AGG - chr1_3:56300641-56300660 None:intergenic 35.0%
TGCTCTTGAAGCAAAACTTA+TGG + chr1_3:56300711-56300730 Msa0127080:five_prime_UTR 35.0%
TCAAGCTCGTAAAAGCTATT+GGG - chr1_3:56300799-56300818 None:intergenic 35.0%
CTTAAACTTGAAACACCTGT+TGG + chr1_3:56300877-56300896 Msa0127080:five_prime_UTR 35.0%
!!! CATCTGTTCAGGTTAGTTTT+TGG + chr1_3:56301312-56301331 Msa0127080:intron 35.0%
GATTGGACACAGAAAATACT+TGG + chr1_3:56301551-56301570 Msa0127080:intron 35.0%
CTTGTATATTCTCCCTTGTT+GGG - chr1_3:56301609-56301628 None:intergenic 35.0%
ACGAACTAAAAGAGAACTTG+AGG - chr1_3:56301847-56301866 None:intergenic 35.0%
CTGCAATTGAACTAAAGAGA+TGG - chr1_3:56301889-56301908 None:intergenic 35.0%
! CTGTGCCATTGATATCAATA+AGG + chr1_3:56301957-56301976 Msa0127080:intron 35.0%
!! CTTGGCCTTATTGATATCAA+TGG - chr1_3:56301965-56301984 None:intergenic 35.0%
TTTGTTACACATATAGACCC+TGG - chr1_3:56302103-56302122 None:intergenic 35.0%
CATTCTGAATGCTAACCTTA+AGG - chr1_3:56302241-56302260 None:intergenic 35.0%
! TTTGTATTGCCACTTATCGT+TGG + chr1_3:56302413-56302432 Msa0127080:five_prime_UTR 35.0%
! TTCCCTATAGTAACGTTTTC+TGG + chr1_3:56302445-56302464 Msa0127080:five_prime_UTR 35.0%
TGCCAGAAAACGTTACTATA+GGG - chr1_3:56302450-56302469 None:intergenic 35.0%
! CTTGTTATATAGTAGCTTCC+AGG - chr1_3:56302475-56302494 None:intergenic 35.0%
ATTGTTTAGTGACATAGTGG+TGG - chr1_3:56302672-56302691 None:intergenic 35.0%
! CTTCCTTCTGTGTAGATTTT+AGG + chr1_3:56302707-56302726 Msa0127080:CDS 35.0%
! CTAGGCAATGTTGTTTGAAA+TGG + chr1_3:56302958-56302977 Msa0127080:intron 35.0%
CTATTTCGAATTTCCCATCT+CGG + chr1_3:56303035-56303054 Msa0127080:CDS 35.0%
GTGTGATAGATAAGGTGAAA+AGG + chr1_3:56303065-56303084 Msa0127080:CDS 35.0%
GACTGAAGCAGTAGAAAATT+TGG + chr1_3:56303138-56303157 Msa0127080:CDS 35.0%
TGAAATATCCCAAAGAACTC+AGG - chr1_3:56303308-56303327 None:intergenic 35.0%
CATGGCAAATTAAAAGTGGA+TGG - chr1_3:56303354-56303373 None:intergenic 35.0%
!!! CATCCACTTTTAATTTGCCA+TGG + chr1_3:56303352-56303371 Msa0127080:three_prime_UTR 35.0%
!!! AGGCGCTATTTTTGAATCAA+TGG + chr1_3:56303392-56303411 Msa0127080:three_prime_UTR 35.0%
TGAAGATAGAAAGAAGGGAG+AGG - chr1_3:56297901-56297920 None:intergenic 40.0%
GGGGAATGAAGATAGAAAGA+AGG - chr1_3:56297907-56297926 None:intergenic 40.0%
!! CCATGGATTTGATTTGAAGG+GGG - chr1_3:56297926-56297945 None:intergenic 40.0%
GGAATAAGAAGGGGTTGTTA+TGG - chr1_3:56297958-56297977 None:intergenic 40.0%
! ATTATTGGAAGTGATGGGAG+AGG - chr1_3:56298070-56298089 None:intergenic 40.0%
! TGAGTTGGAGAATGAGAGTA+GGG - chr1_3:56298182-56298201 None:intergenic 40.0%
!! TTGAGTTGGAGAATGAGAGT+AGG - chr1_3:56298183-56298202 None:intergenic 40.0%
AAAGCAGTTTCCAAATCGGT+TGG + chr1_3:56298252-56298271 Msa0127080:five_prime_UTR 40.0%
AACAGTAGGAAGACCTTGAT+CGG - chr1_3:56298430-56298449 None:intergenic 40.0%
GTATTCCTAGCAACAACAGT+AGG - chr1_3:56298444-56298463 None:intergenic 40.0%
GTTAGGTTCCAATAGCGAAT+TGG + chr1_3:56298467-56298486 Msa0127080:five_prime_UTR 40.0%
AAGAACCACCAATTCGCTAT+TGG - chr1_3:56298478-56298497 None:intergenic 40.0%
TGTACAAATCTAGCGACCAA+TGG - chr1_3:56298501-56298520 None:intergenic 40.0%
!!! ACCTATTTTTGCCTCGTTTG+TGG + chr1_3:56298647-56298666 Msa0127080:five_prime_UTR 40.0%
!!! CCTATTTTTGCCTCGTTTGT+GGG + chr1_3:56298648-56298667 Msa0127080:five_prime_UTR 40.0%
!!! CTATTTTTGCCTCGTTTGTG+GGG + chr1_3:56298649-56298668 Msa0127080:five_prime_UTR 40.0%
! TGGTTTGCAGAGTATAACAG+AGG + chr1_3:56298869-56298888 Msa0127080:five_prime_UTR 40.0%
CAGAGTATAACAGAGGTTGT+GGG + chr1_3:56298876-56298895 Msa0127080:five_prime_UTR 40.0%
!! TGTGGGTGGATTTGTTAAAC+TGG + chr1_3:56298893-56298912 Msa0127080:five_prime_UTR 40.0%
TATAAAGAAAGCTGCACCTC+TGG + chr1_3:56298977-56298996 Msa0127080:five_prime_UTR 40.0%
TGGTTTCAAATGACAGATGG+AGG + chr1_3:56299104-56299123 Msa0127080:intron 40.0%
! GCCGTTCTTATTGGTTATAG+TGG + chr1_3:56299167-56299186 Msa0127080:five_prime_UTR 40.0%
!! TCTCAACAAATTCTGGTTCC+TGG + chr1_3:56299205-56299224 Msa0127080:five_prime_UTR 40.0%
!! CTCAACAAATTCTGGTTCCT+GGG + chr1_3:56299206-56299225 Msa0127080:five_prime_UTR 40.0%
ACTCAACCTAAGGTGAAAGT+TGG - chr1_3:56299593-56299612 None:intergenic 40.0%
TGGTGAGATGCAAATACAAC+TGG + chr1_3:56299674-56299693 Msa0127080:intron 40.0%
ACTGTGATTAATGCGCTTCT+TGG + chr1_3:56299782-56299801 Msa0127080:five_prime_UTR 40.0%
! ACTTCTCTAAGAATTGGAGC+TGG - chr1_3:56299935-56299954 None:intergenic 40.0%
CAAGGGAGAACCAAAACATA+AGG - chr1_3:56299982-56300001 None:intergenic 40.0%
AAGGATGAAGAAAACTGCTG+AGG - chr1_3:56300032-56300051 None:intergenic 40.0%
CATACCTCACTTCCAGTTAA+AGG - chr1_3:56300179-56300198 None:intergenic 40.0%
CTTTAACTGGAAGTGAGGTA+TGG + chr1_3:56300177-56300196 Msa0127080:intron 40.0%
AAACAACATGTCATACCCCT+GGG - chr1_3:56300267-56300286 None:intergenic 40.0%
AAAACAACATGTCATACCCC+TGG - chr1_3:56300268-56300287 None:intergenic 40.0%
ACAGCAATGGAAGAAGAAAG+TGG + chr1_3:56300322-56300341 Msa0127080:five_prime_UTR 40.0%
!! AGCTTCTAGGATTGATCTAG+TGG + chr1_3:56300428-56300447 Msa0127080:intron 40.0%
TAGGATTGATCTAGTGGTGA+GGG + chr1_3:56300434-56300453 Msa0127080:intron 40.0%
TCACAATTCAATGCAGCTTG+AGG + chr1_3:56300606-56300625 Msa0127080:intron 40.0%
GGAAGCAATGTCCTTCATTA+AGG + chr1_3:56300627-56300646 Msa0127080:five_prime_UTR 40.0%
! CTTATGGCTACCTCTAGTTT+CGG + chr1_3:56300727-56300746 Msa0127080:five_prime_UTR 40.0%
! TTATGGCTACCTCTAGTTTC+GGG + chr1_3:56300728-56300747 Msa0127080:five_prime_UTR 40.0%
GAAGAATTGTTGTCAGTCTC+TGG + chr1_3:56300760-56300779 Msa0127080:five_prime_UTR 40.0%
!! TCAGTCTCTGGTTCTCAATA+TGG + chr1_3:56300772-56300791 Msa0127080:five_prime_UTR 40.0%
CTCAAGCTCGTAAAAGCTAT+TGG - chr1_3:56300800-56300819 None:intergenic 40.0%
TGGAAAATGAGAGCCTTTCT+TGG + chr1_3:56301022-56301041 Msa0127080:five_prime_UTR 40.0%
AAAATGAGAGCCTTTCTTGG+AGG + chr1_3:56301025-56301044 Msa0127080:five_prime_UTR 40.0%
! GAGTTTGTTTCCTCCAAGAA+AGG - chr1_3:56301038-56301057 None:intergenic 40.0%
GAGGAAACAAACTCTATCCA+TGG + chr1_3:56301044-56301063 Msa0127080:five_prime_UTR 40.0%
ATCCACTAAATCACGTGTTG+TGG + chr1_3:56301163-56301182 Msa0127080:five_prime_UTR 40.0%
GTCATTCTGAATTCTTGAGG+TGG - chr1_3:56301273-56301292 None:intergenic 40.0%
AAAAAGTGGAGTCCAGCTTA+TGG - chr1_3:56301419-56301438 None:intergenic 40.0%
TTGGATGTACTAGCCATCTT+GGG - chr1_3:56301453-56301472 None:intergenic 40.0%
TTTGGATGTACTAGCCATCT+TGG - chr1_3:56301454-56301473 None:intergenic 40.0%
! TCTCCCTTGTTGGGTATTTT+TGG - chr1_3:56301600-56301619 None:intergenic 40.0%
CCTTGTATATTCTCCCTTGT+TGG - chr1_3:56301610-56301629 None:intergenic 40.0%
CCAACAAGGGAGAATATACA+AGG + chr1_3:56301607-56301626 Msa0127080:five_prime_UTR 40.0%
!! AGGAATCTTTTGAGAAGCGA+TGG + chr1_3:56301627-56301646 Msa0127080:five_prime_UTR 40.0%
GTTGTTCAACTGAAGTGACT+TGG - chr1_3:56301983-56302002 None:intergenic 40.0%
GCAACCTGAATAAATCACAC+TGG - chr1_3:56302367-56302386 None:intergenic 40.0%
GTGCCAGAAAACGTTACTAT+AGG - chr1_3:56302451-56302470 None:intergenic 40.0%
GTCCCTAAAATCTACACAGA+AGG - chr1_3:56302713-56302732 None:intergenic 40.0%
!! GTGTAGATTTTAGGGACTCT+TGG + chr1_3:56302716-56302735 Msa0127080:CDS 40.0%
ATCTGTACTGCAAACCACAT+TGG + chr1_3:56302777-56302796 Msa0127080:CDS 40.0%
AGCAAGAAGATCTTCCAATG+TGG - chr1_3:56302794-56302813 None:intergenic 40.0%
TTGGAAGATCTTCTTGCTCT+TGG + chr1_3:56302796-56302815 Msa0127080:CDS 40.0%
! GCTCTTGGAATTTGTTCTGT+TGG + chr1_3:56302811-56302830 Msa0127080:CDS 40.0%
! CTTGGAATTTGTTCTGTTGG+CGG + chr1_3:56302814-56302833 Msa0127080:CDS 40.0%
! TTGGAATTTGTTCTGTTGGC+GGG + chr1_3:56302815-56302834 Msa0127080:CDS 40.0%
GAAAAGGAAAGCAGATACCT+TGG + chr1_3:56303081-56303100 Msa0127080:CDS 40.0%
! TTCTTCAAGTTCATTCGCCA+AGG - chr1_3:56303101-56303120 None:intergenic 40.0%
AACTTGAAGAAGCCATGAAG+AGG + chr1_3:56303110-56303129 Msa0127080:CDS 40.0%
ACTTGAAGAAGCCATGAAGA+GGG + chr1_3:56303111-56303130 Msa0127080:CDS 40.0%
TTCAGTCAAATCCCTCTTCA+TGG - chr1_3:56303125-56303144 None:intergenic 40.0%
GATACCTTTGTGAGAGTCAT+TGG + chr1_3:56303160-56303179 Msa0127080:CDS 40.0%
TTTGCCAATGACTCTCACAA+AGG - chr1_3:56303167-56303186 None:intergenic 40.0%
! CTCAGGACACATGAAGATTT+TGG - chr1_3:56303291-56303310 None:intergenic 40.0%
TTCATGTGTCCTGAGTTCTT+TGG + chr1_3:56303296-56303315 Msa0127080:exon 40.0%
TCATGTGTCCTGAGTTCTTT+GGG + chr1_3:56303297-56303316 Msa0127080:exon 40.0%
AGGCCATGGCAAATTAAAAG+TGG - chr1_3:56303358-56303377 None:intergenic 40.0%
ATTTCCTGGAATAGGGTTCA+AGG - chr1_3:56303430-56303449 None:intergenic 40.0%
GATAGAAAGAAGGGAGAGGA+AGG - chr1_3:56297897-56297916 None:intergenic 45.0%
CCCCCTTCAAATCAAATCCA+TGG + chr1_3:56297923-56297942 Msa0127080:five_prime_UTR 45.0%
! TGTTATGGAACAGGGTACCA+TGG - chr1_3:56297943-56297962 None:intergenic 45.0%
GAAGGGGTTGTTATGGAACA+GGG - chr1_3:56297951-56297970 None:intergenic 45.0%
AGAAGGGGTTGTTATGGAAC+AGG - chr1_3:56297952-56297971 None:intergenic 45.0%
TAGGAGGGAGGAATAAGAAG+GGG - chr1_3:56297967-56297986 None:intergenic 45.0%
GTAGGAGGGAGGAATAAGAA+GGG - chr1_3:56297968-56297987 None:intergenic 45.0%
AGTAGGAGGGAGGAATAAGA+AGG - chr1_3:56297969-56297988 None:intergenic 45.0%
TTCTCGCCATTTCTTCCCTA+AGG + chr1_3:56298092-56298111 Msa0127080:five_prime_UTR 45.0%
! GAGTAGGGACTTTGAGTTCA+GGG - chr1_3:56298167-56298186 None:intergenic 45.0%
! AGAGTAGGGACTTTGAGTTC+AGG - chr1_3:56298168-56298187 None:intergenic 45.0%
GAATCTGATCGGAGTTGAGT+TGG - chr1_3:56298197-56298216 None:intergenic 45.0%
TCCGATCAGATTCTTACACG+TGG + chr1_3:56298204-56298223 Msa0127080:five_prime_UTR 45.0%
GCCACGTGTAAGAATCTGAT+CGG - chr1_3:56298208-56298227 None:intergenic 45.0%
GTCTTCCTACTGTTGTTGCT+AGG + chr1_3:56298436-56298455 Msa0127080:five_prime_UTR 45.0%
AGGTTCCAATAGCGAATTGG+TGG + chr1_3:56298470-56298489 Msa0127080:five_prime_UTR 45.0%
! CGAATTGGTGGTTCTTCCAT+TGG + chr1_3:56298482-56298501 Msa0127080:five_prime_UTR 45.0%
!! CTTATTTATGGTGGTGGTGG+TGG + chr1_3:56298570-56298589 Msa0127080:five_prime_UTR 45.0%
CCCACAAACGAGGCAAAAAT+AGG - chr1_3:56298651-56298670 None:intergenic 45.0%
GAGAAACTTGTCATGCGATG+AGG + chr1_3:56298671-56298690 Msa0127080:five_prime_UTR 45.0%
! GCTTCGAGTTTACTTGCTTC+TGG + chr1_3:56298693-56298712 Msa0127080:five_prime_UTR 45.0%
! TTACTTGCTTCTGGTGCTAG+TGG + chr1_3:56298702-56298721 Msa0127080:five_prime_UTR 45.0%
!! TGATGGTGGGTTTGCAAATG+AGG + chr1_3:56298785-56298804 Msa0127080:five_prime_UTR 45.0%
TGCAAATGAGGAGAGAACAC+TGG + chr1_3:56298797-56298816 Msa0127080:five_prime_UTR 45.0%
GCAGAGTATAACAGAGGTTG+TGG + chr1_3:56298875-56298894 Msa0127080:five_prime_UTR 45.0%
AGTATAACAGAGGTTGTGGG+TGG + chr1_3:56298879-56298898 Msa0127080:five_prime_UTR 45.0%
GATTGACGAGCCGTTCTTAT+TGG + chr1_3:56299158-56299177 Msa0127080:five_prime_UTR 45.0%
CTGGTTCCTGGGATATACAT+TGG + chr1_3:56299217-56299236 Msa0127080:five_prime_UTR 45.0%
! CTCTAAGAATTGGAGCTGGA+AGG - chr1_3:56299931-56299950 None:intergenic 45.0%
TAAGACGCTGTTGTCTCTGA+AGG - chr1_3:56300100-56300119 None:intergenic 45.0%
AAAAGAAGCAAGTCTGCACG+AGG - chr1_3:56300137-56300156 None:intergenic 45.0%
TATAGTGTACTTACCCACCC+AGG + chr1_3:56300247-56300266 Msa0127080:intron 45.0%
ATAGTGTACTTACCCACCCA+GGG + chr1_3:56300248-56300267 Msa0127080:intron 45.0%
CTAGGATTGATCTAGTGGTG+AGG + chr1_3:56300433-56300452 Msa0127080:intron 45.0%
TGATCTAGTGGTGAGGGATT+TGG + chr1_3:56300440-56300459 Msa0127080:intron 45.0%
GATCTAGTGGTGAGGGATTT+GGG + chr1_3:56300441-56300460 Msa0127080:intron 45.0%
GGATTTGGGTAGTATGCATG+AGG + chr1_3:56300455-56300474 Msa0127080:intron 45.0%
GGTAGTATGCATGAGGTCTT+AGG + chr1_3:56300462-56300481 Msa0127080:intron 45.0%
GTTGAGTTTCCCGAAACTAG+AGG - chr1_3:56300740-56300759 None:intergenic 45.0%
AGTCTGTCTGCAATTCCAAC+AGG - chr1_3:56300895-56300914 None:intergenic 45.0%
AGACTATCGATATGCCAAGC+AGG + chr1_3:56300945-56300964 Msa0127080:five_prime_UTR 45.0%
TCGATATGCCAAGCAGGATT+TGG + chr1_3:56300951-56300970 Msa0127080:five_prime_UTR 45.0%
TATTGCAGCCAAATCCTGCT+TGG - chr1_3:56300962-56300981 None:intergenic 45.0%
CTCCACAACACGTGATTTAG+TGG - chr1_3:56301168-56301187 None:intergenic 45.0%
TTCTGAATTCTTGAGGTGGC+AGG - chr1_3:56301269-56301288 None:intergenic 45.0%
TCCTTCTGTGTCATCTGTTC+AGG + chr1_3:56301301-56301320 Msa0127080:five_prime_UTR 45.0%
ACCTGAACAGATGACACAGA+AGG - chr1_3:56301305-56301324 None:intergenic 45.0%
!!! GCTGGACTCCACTTTTTCTT+TGG + chr1_3:56301422-56301441 Msa0127080:intron 45.0%
GGGGACATCCAAAGAAAAAG+TGG - chr1_3:56301433-56301452 None:intergenic 45.0%
TTCTTTGGATGTCCCCAAGA+TGG + chr1_3:56301437-56301456 Msa0127080:intron 45.0%
TGGATGTACTAGCCATCTTG+GGG - chr1_3:56301452-56301471 None:intergenic 45.0%
AGCGCCAAAAATACCCAACA+AGG + chr1_3:56301593-56301612 Msa0127080:five_prime_UTR 45.0%
GCGCCAAAAATACCCAACAA+GGG + chr1_3:56301594-56301613 Msa0127080:five_prime_UTR 45.0%
CTAAAGAAAGGGGATCAAGC+TGG + chr1_3:56301701-56301720 Msa0127080:five_prime_UTR 45.0%
TGAGCAAGAAGTTCGTGAGA+TGG + chr1_3:56301772-56301791 Msa0127080:intron 45.0%
CAAAGGCAACTTTGCTGATG+TGG + chr1_3:56301932-56301951 Msa0127080:intron 45.0%
GGTGATCTATGATGCTAGAG+AGG + chr1_3:56302267-56302286 Msa0127080:five_prime_UTR 45.0%
CACATGAAGCCAACGATAAG+TGG - chr1_3:56302425-56302444 None:intergenic 45.0%
ATTGTCTGAGTCTTCCTCAG+CGG + chr1_3:56302593-56302612 Msa0127080:five_prime_UTR 45.0%
GTTTAGTGACATAGTGGTGG+TGG - chr1_3:56302669-56302688 None:intergenic 45.0%
TTAGGGACTCTTGGTCAACT+AGG + chr1_3:56302725-56302744 Msa0127080:CDS 45.0%
TTTCGAATTTCCCATCTCGG+AGG + chr1_3:56303038-56303057 Msa0127080:CDS 45.0%
TGGCAAACCTTACCAAGATC+AGG + chr1_3:56303180-56303199 Msa0127080:CDS 45.0%
TCTTGCTTAAAGAGAGGCCA+TGG - chr1_3:56303372-56303391 None:intergenic 45.0%
TGGCCTCTCTTTAAGCAAGA+AGG + chr1_3:56303372-56303391 Msa0127080:three_prime_UTR 45.0%
ATGTCCTTGAACCCTATTCC+AGG + chr1_3:56303423-56303442 Msa0127080:three_prime_UTR 45.0%
AGGAGGGAGATATGGATGGA+TGG - chr1_3:56297877-56297896 None:intergenic 50.0%
AGGAAGGAGGGAGATATGGA+TGG - chr1_3:56297881-56297900 None:intergenic 50.0%
GAAAGAAGGGAGAGGAAGGA+GGG - chr1_3:56297893-56297912 None:intergenic 50.0%
AGAAAGAAGGGAGAGGAAGG+AGG - chr1_3:56297894-56297913 None:intergenic 50.0%
ATGGTAGGGAGGGTGAAGAA+GGG - chr1_3:56297992-56298011 None:intergenic 50.0%
AGGTGTGGATAGCGAGAGAA+GGG - chr1_3:56298025-56298044 None:intergenic 50.0%
! AAGTGATGGGAGAGGAATGG+AGG - chr1_3:56298062-56298081 None:intergenic 50.0%
! TGGAAGTGATGGGAGAGGAA+TGG - chr1_3:56298065-56298084 None:intergenic 50.0%
CTTGGGCCTTAGGGAAGAAA+TGG - chr1_3:56298101-56298120 None:intergenic 50.0%
ATCGGAGAGTAAAACGCCAC+TGG - chr1_3:56298412-56298431 None:intergenic 50.0%
! GGCGTTTTACTCTCCGATCA+AGG + chr1_3:56298414-56298433 Msa0127080:five_prime_UTR 50.0%
CAAGTTTCTCCCCACAAACG+AGG - chr1_3:56298661-56298680 None:intergenic 50.0%
TGTCAGGGGGAATTCAACTC+TGG + chr1_3:56299752-56299771 Msa0127080:intron 50.0%
!! CGCTGTGAAAGGTATCCAGA+TGG + chr1_3:56299890-56299909 Msa0127080:five_prime_UTR 50.0%
GAGACAACAGCGTCTTACAG+AGG + chr1_3:56300103-56300122 Msa0127080:five_prime_UTR 50.0%
TCAGCTGATCGCCCTTTAAC+TGG + chr1_3:56300164-56300183 Msa0127080:five_prime_UTR 50.0%
TCGCCCTTTAACTGGAAGTG+AGG + chr1_3:56300172-56300191 Msa0127080:five_prime_UTR 50.0%
TAGTGTACTTACCCACCCAG+GGG + chr1_3:56300249-56300268 Msa0127080:intron 50.0%
AACATGTCATACCCCTGGGT+GGG - chr1_3:56300263-56300282 None:intergenic 50.0%
TGGGTACTTCCGAAGCTTCT+AGG + chr1_3:56300415-56300434 Msa0127080:intron 50.0%
TCGCAGGGATGGATAGAATG+AGG + chr1_3:56300854-56300873 Msa0127080:five_prime_UTR 50.0%
!! GTAACGTTTTCTGGCACTCC+TGG + chr1_3:56302454-56302473 Msa0127080:five_prime_UTR 50.0%
!! TAGTGACATAGTGGTGGTGG+TGG - chr1_3:56302666-56302685 None:intergenic 50.0%
! TCTTGGTCAACTAGGAGTGC+TGG + chr1_3:56302733-56302752 Msa0127080:CDS 50.0%
TTCTGCGCCTGATCTTGGTA+AGG - chr1_3:56303190-56303209 None:intergenic 50.0%
ACCAAGATCAGGCGCAGAAT+AGG + chr1_3:56303191-56303210 Msa0127080:CDS 50.0%
GCGCCTTCTTGCTTAAAGAG+AGG - chr1_3:56303378-56303397 None:intergenic 50.0%
GGAGAGGAAGGAGGGAGATA+TGG - chr1_3:56297885-56297904 None:intergenic 55.0%
TGAAGAAGGGAGTAGGAGGG+AGG - chr1_3:56297979-56297998 None:intergenic 55.0%
GGGTGAAGAAGGGAGTAGGA+GGG - chr1_3:56297982-56298001 None:intergenic 55.0%
AGGGTGAAGAAGGGAGTAGG+AGG - chr1_3:56297983-56298002 None:intergenic 55.0%
GATGGTAGGGAGGGTGAAGA+AGG - chr1_3:56297993-56298012 None:intergenic 55.0%
GGTGTAAGGGATGGTAGGGA+GGG - chr1_3:56298002-56298021 None:intergenic 55.0%
! AGGGGGTGTAAGGGATGGTA+GGG - chr1_3:56298006-56298025 None:intergenic 55.0%
! AAGGGGGTGTAAGGGATGGT+AGG - chr1_3:56298007-56298026 None:intergenic 55.0%
! AGAGAAGGGGGTGTAAGGGA+TGG - chr1_3:56298011-56298030 None:intergenic 55.0%
! AGCGAGAGAAGGGGGTGTAA+GGG - chr1_3:56298015-56298034 None:intergenic 55.0%
! TAGCGAGAGAAGGGGGTGTA+AGG - chr1_3:56298016-56298035 None:intergenic 55.0%
GTGTGGATAGCGAGAGAAGG+GGG - chr1_3:56298023-56298042 None:intergenic 55.0%
GGTGTGGATAGCGAGAGAAG+GGG - chr1_3:56298024-56298043 None:intergenic 55.0%
GAGGTGTGGATAGCGAGAGA+AGG - chr1_3:56298026-56298045 None:intergenic 55.0%
! GAATGGAGGTGCGGCGAAAA+GGG - chr1_3:56298048-56298067 None:intergenic 55.0%
ATGGGAGAGGAATGGAGGTG+CGG - chr1_3:56298057-56298076 None:intergenic 55.0%
! GAGTGTTCTAGGCTGGGGTT+GGG - chr1_3:56298124-56298143 None:intergenic 55.0%
! AGAGTGTTCTAGGCTGGGGT+TGG - chr1_3:56298125-56298144 None:intergenic 55.0%
!! GGGAAGAGTGTTCTAGGCTG+GGG - chr1_3:56298129-56298148 None:intergenic 55.0%
!! GGGGAAGAGTGTTCTAGGCT+GGG - chr1_3:56298130-56298149 None:intergenic 55.0%
CAGCCTAGAACACTCTTCCC+CGG + chr1_3:56298129-56298148 Msa0127080:five_prime_UTR 55.0%
! TTCAGGGCGTTTGTAACCGC+CGG - chr1_3:56298151-56298170 None:intergenic 55.0%
AACGCCACTGGTAACAGCAG+CGG - chr1_3:56298400-56298419 None:intergenic 55.0%
!! TGGTGGTGGTGGTGGTGATT+TGG + chr1_3:56298578-56298597 Msa0127080:five_prime_UTR 55.0%
CAACATGTCATACCCCTGGG+TGG - chr1_3:56300264-56300283 None:intergenic 55.0%
AGAGCAGATCGAGCAGACAC+AGG - chr1_3:56300697-56300716 None:intergenic 55.0%
TAGATGGGTCGACGATCGCA+GGG + chr1_3:56300839-56300858 Msa0127080:five_prime_UTR 55.0%
AGGGGATCAAGCTGGCTATC+AGG + chr1_3:56301709-56301728 Msa0127080:five_prime_UTR 55.0%
CGAATTTCCCATCTCGGAGG+CGG + chr1_3:56303041-56303060 Msa0127080:CDS 55.0%
GAGGCGGCGTGTGATAGATA+AGG + chr1_3:56303057-56303076 Msa0127080:CDS 55.0%
GCCTATTCTGCGCCTGATCT+TGG - chr1_3:56303195-56303214 None:intergenic 55.0%
GGGAGGGTGAAGAAGGGAGT+AGG - chr1_3:56297986-56298005 None:intergenic 60.0%
GGGTGTAAGGGATGGTAGGG+AGG - chr1_3:56298003-56298022 None:intergenic 60.0%
! GGAATGGAGGTGCGGCGAAA+AGG - chr1_3:56298049-56298068 None:intergenic 60.0%
TCTAGGCTGGGGTTGGGCTT+GGG - chr1_3:56298118-56298137 None:intergenic 60.0%
TTCTAGGCTGGGGTTGGGCT+TGG - chr1_3:56298119-56298138 None:intergenic 60.0%
!! CGGGGAAGAGTGTTCTAGGC+TGG - chr1_3:56298131-56298150 None:intergenic 60.0%
CCTAGAACACTCTTCCCCGG+CGG + chr1_3:56298132-56298151 Msa0127080:five_prime_UTR 60.0%
! TCAGGGCGTTTGTAACCGCC+GGG - chr1_3:56298150-56298169 None:intergenic 60.0%
CTAGATGGGTCGACGATCGC+AGG + chr1_3:56300838-56300857 Msa0127080:five_prime_UTR 60.0%
GTGCGGCGAAAAGGGAGGTG+TGG - chr1_3:56298040-56298059 None:intergenic 65.0%
! TGGAGGTGCGGCGAAAAGGG+AGG - chr1_3:56298045-56298064 None:intergenic 65.0%
GGGGTTGGGCTTGGGCCTTA+GGG - chr1_3:56298110-56298129 None:intergenic 65.0%
TGGGGTTGGGCTTGGGCCTT+AGG - chr1_3:56298111-56298130 None:intergenic 65.0%
!! CCGCCGGGGAAGAGTGTTCT+AGG - chr1_3:56298135-56298154 None:intergenic 65.0%
! CAGGGCGTTTGTAACCGCCG+GGG - chr1_3:56298149-56298168 None:intergenic 65.0%
GCTGCCGCTGCTGTTACCAG+TGG + chr1_3:56298393-56298412 Msa0127080:five_prime_UTR 65.0%
TGGGTCGACGATCGCAGGGA+TGG + chr1_3:56300843-56300862 Msa0127080:five_prime_UTR 65.0%
TCACACGCCGCCTCCGAGAT+GGG - chr1_3:56303051-56303070 None:intergenic 65.0%
ATCACACGCCGCCTCCGAGA+TGG - chr1_3:56303052-56303071 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 56297857 56303610 56297857 ID=Msa0127080;Name=Msa0127080
chr1_3 mRNA 56297857 56303610 56297857 ID=Msa0127080-mRNA-1;Parent=Msa0127080;Name=Msa0127080-mRNA-1;_AED=0.10;_eAED=0.10;_QI=2992|1|1|1|0.77|0.7|10|301|138
chr1_3 exon 56297857 56298998 56297857 ID=Msa0127080-mRNA-1:exon:17719;Parent=Msa0127080-mRNA-1
chr1_3 exon 56299120 56299238 56299120 ID=Msa0127080-mRNA-1:exon:17720;Parent=Msa0127080-mRNA-1
chr1_3 exon 56299758 56299952 56299758 ID=Msa0127080-mRNA-1:exon:17721;Parent=Msa0127080-mRNA-1
chr1_3 exon 56300062 56300193 56300062 ID=Msa0127080-mRNA-1:exon:17722;Parent=Msa0127080-mRNA-1
chr1_3 exon 56300302 56300388 56300302 ID=Msa0127080-mRNA-1:exon:17723;Parent=Msa0127080-mRNA-1
chr1_3 exon 56300622 56301065 56300622 ID=Msa0127080-mRNA-1:exon:17724;Parent=Msa0127080-mRNA-1
chr1_3 exon 56301158 56301322 56301158 ID=Msa0127080-mRNA-1:exon:17725;Parent=Msa0127080-mRNA-1
chr1_3 exon 56301563 56301781 56301563 ID=Msa0127080-mRNA-1:exon:17726;Parent=Msa0127080-mRNA-1
chr1_3 exon 56302214 56302836 56302214 ID=Msa0127080-mRNA-1:exon:17727;Parent=Msa0127080-mRNA-1
chr1_3 exon 56303027 56303610 56303027 ID=Msa0127080-mRNA-1:exon:17728;Parent=Msa0127080-mRNA-1
chr1_3 five_prime_UTR 56297857 56298998 56297857 ID=Msa0127080-mRNA-1:five_prime_utr;Parent=Msa0127080-mRNA-1
chr1_3 five_prime_UTR 56299120 56299238 56299120 ID=Msa0127080-mRNA-1:five_prime_utr;Parent=Msa0127080-mRNA-1
chr1_3 five_prime_UTR 56299758 56299952 56299758 ID=Msa0127080-mRNA-1:five_prime_utr;Parent=Msa0127080-mRNA-1
chr1_3 five_prime_UTR 56300062 56300193 56300062 ID=Msa0127080-mRNA-1:five_prime_utr;Parent=Msa0127080-mRNA-1
chr1_3 five_prime_UTR 56300302 56300388 56300302 ID=Msa0127080-mRNA-1:five_prime_utr;Parent=Msa0127080-mRNA-1
chr1_3 five_prime_UTR 56300622 56301065 56300622 ID=Msa0127080-mRNA-1:five_prime_utr;Parent=Msa0127080-mRNA-1
chr1_3 five_prime_UTR 56301158 56301322 56301158 ID=Msa0127080-mRNA-1:five_prime_utr;Parent=Msa0127080-mRNA-1
chr1_3 five_prime_UTR 56301563 56301781 56301563 ID=Msa0127080-mRNA-1:five_prime_utr;Parent=Msa0127080-mRNA-1
chr1_3 five_prime_UTR 56302214 56302702 56302214 ID=Msa0127080-mRNA-1:five_prime_utr;Parent=Msa0127080-mRNA-1
chr1_3 CDS 56302703 56302836 56302703 ID=Msa0127080-mRNA-1:cds;Parent=Msa0127080-mRNA-1
chr1_3 CDS 56303027 56303309 56303027 ID=Msa0127080-mRNA-1:cds;Parent=Msa0127080-mRNA-1
chr1_3 three_prime_UTR 56303310 56303610 56303310 ID=Msa0127080-mRNA-1:three_prime_utr;Parent=Msa0127080-mRNA-1
Gene Sequence

>Msa0127080

ATGTCTTCCTTCTGTGTAGATTTTAGGGACTCTTGGTCAACTAGGAGTGCTGGTTTTTCTGCTTCACTATTGACATCTGTACTGCAAACCACATTGGAAGATCTTCTTGCTCTTGGAATTTGTTCTGTTGGCGGGTATATAGCTATTTCGAATTTCCCATCTCGGAGGCGGCGTGTGATAGATAAGGTGAAAAGGAAAGCAGATACCTTGGCGAATGAACTTGAAGAAGCCATGAAGAGGGATTTGACTGAAGCAGTAGAAAATTTGGATACCTTTGTGAGAGTCATTGGCAAACCTTACCAAGATCAGGCGCAGAATAGGCTAAACAAGCTAGTTGAGATTCAAGAAGAAATATCAAATATTGAAAAGAAACTTAGAACACTACAAATTGATATCCAAAATCTTCATGTGTCCTGA
Protein sequence

>Msa0127080

MSSFCVDFRDSWSTRSAGFSASLLTSVLQTTLEDLLALGICSVGGYIAISNFPSRRRRVIDKVKRKADTLANELEEAMKRDLTEAVENLDTFVRVIGKPYQDQAQNRLNKLVEIQEEISNIEKKLRTLQIDIQNLHVS*