AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0726640


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0726640 MtrunA17_Chr5g0418481 98.295 176 3 0 1 176 1 176 1.52e-128 357
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0726640 AT2G03420.1 73.585 106 28 0 69 174 63 168 1.04e-53 168

Find 59 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTAAAATTGTTTCTTCAAT+TGG 0.274748 5_1:+27916937 None:intergenic
CTTCAATTGCAATTCTTCTC+TGG 0.318920 5_1:-27918536 Msa0726640:CDS
CTGCTTACGAGGGGCGGAAT+GGG 0.329826 5_1:-27917162 Msa0726640:CDS
ATGAATTTGTCCCTTGCCTC+TGG 0.354711 5_1:+27917107 None:intergenic
ACGTGGATTATTTCTATGTA+TGG 0.367566 5_1:-27916868 Msa0726640:three_prime_UTR
AGCAAAGGACGGGGAGATAA+GGG 0.376721 5_1:+27918800 None:intergenic
CCTCAAAAGAAGGTTCAGTT+TGG 0.387035 5_1:-27918645 Msa0726640:CDS
CATGATGATGATGATTGGTT+TGG 0.414757 5_1:+27918728 None:intergenic
TGAAACCATTAAAACGTTTG+AGG 0.439460 5_1:+27917996 None:intergenic
AAGTCAATCTGAGGCAGCTC+AGG 0.441780 5_1:+27918019 None:intergenic
CTGCCTATCAGCTGAACACT+TGG 0.443158 5_1:+27918769 None:intergenic
CTCCCAAGTGTTCAGCTGAT+AGG 0.450504 5_1:-27918772 Msa0726640:five_prime_UTR
GTAAGAATGATGAGAAGATA+AGG 0.480601 5_1:+27918590 None:intergenic
CAAACCAATCATCATCATCA+TGG 0.480934 5_1:-27918727 Msa0726640:exon
AAGCAAAGGACGGGGAGATA+AGG 0.481712 5_1:+27918799 None:intergenic
GGGAGTTGGAAGCAAAGGAC+GGG 0.489079 5_1:+27918790 None:intergenic
CGAGGGGCGGAATGGGGAGT+TGG 0.490686 5_1:-27917155 Msa0726640:CDS
GCTCAAGCAGTTTCTTCACC+AGG 0.491458 5_1:+27917828 None:intergenic
ACTGCTTACGAGGGGCGGAA+TGG 0.499290 5_1:-27917163 Msa0726640:CDS
GAACCCATGATGATGATGAT+TGG 0.506344 5_1:+27918723 None:intergenic
CATAGCAATGTTGAAGGAGA+AGG 0.511435 5_1:-27917087 Msa0726640:CDS
GCACATGCTGGATTCATGTC+AGG 0.519014 5_1:-27918070 Msa0726640:CDS
TCAGCTGAACACTTGGGAGT+TGG 0.522533 5_1:+27918776 None:intergenic
CAAATTCATAGCAATGTTGA+AGG 0.527626 5_1:-27917093 Msa0726640:CDS
ACTCAGCAATCCTCAAAAGA+AGG 0.529490 5_1:-27918655 Msa0726640:CDS
CACTTGGGAGTTGGAAGCAA+AGG 0.533144 5_1:+27918785 None:intergenic
ATTCTTCTCTGGTCAACTCC+AGG 0.534134 5_1:-27918525 Msa0726640:intron
CTCAAGCAGTTTCTTCACCA+GGG 0.535692 5_1:+27917829 None:intergenic
ATCTGAGGCAGCTCAGGACC+AGG 0.536804 5_1:+27918025 None:intergenic
GTGGAAATCTGAATGAAAGA+TGG 0.538239 5_1:+27918690 None:intergenic
GATAGGCAGCAGTGTAGAGA+GGG 0.542653 5_1:-27918755 Msa0726640:five_prime_UTR
GGGAATGACTCCAGAGGCAA+GGG 0.550474 5_1:-27917117 Msa0726640:CDS
GGATTCATGTCAGGAATCAC+AGG 0.551319 5_1:-27918061 Msa0726640:CDS
TCAAGCAGTTTCTTCACCAG+GGG 0.567433 5_1:+27917830 None:intergenic
TGCTTACGAGGGGCGGAATG+GGG 0.568619 5_1:-27917161 Msa0726640:CDS
GCAAAGGACGGGGAGATAAG+GGG 0.569816 5_1:+27918801 None:intergenic
TGGGAGTTGGAAGCAAAGGA+CGG 0.574782 5_1:+27918789 None:intergenic
AATGAAAGATGGTAATGAAG+AGG 0.576236 5_1:+27918701 None:intergenic
AGGGAATGACTCCAGAGGCA+AGG 0.577514 5_1:-27917118 Msa0726640:CDS
GAGAACAAGTACTGCTTACG+AGG 0.584541 5_1:-27917173 Msa0726640:CDS
AAACCAATCATCATCATCAT+GGG 0.587744 5_1:-27918726 Msa0726640:exon
TGCAGCTAGAGCATATAGAA+AGG 0.592119 5_1:-27917045 Msa0726640:three_prime_UTR
TAAGGGGCAGCAGAGATACA+AGG 0.593420 5_1:+27918817 None:intergenic
GTTGGTGATTGTTCAGCAGA+GGG 0.594398 5_1:-27917137 Msa0726640:CDS
AGTTGGTGATTGTTCAGCAG+AGG 0.606424 5_1:-27917138 Msa0726640:CDS
CAAGTACTGCTTACGAGGGG+CGG 0.612792 5_1:-27917168 Msa0726640:CDS
TGATAGGCAGCAGTGTAGAG+AGG 0.614861 5_1:-27918756 Msa0726640:five_prime_UTR
TGCCTATCAGCTGAACACTT+GGG 0.618533 5_1:+27918770 None:intergenic
GGAGTTGGAAGCAAAGGACG+GGG 0.625031 5_1:+27918791 None:intergenic
ACAGGACTAGAGTCTGTACC+TGG 0.626927 5_1:-27918043 Msa0726640:CDS
GCAATGTTGAAGGAGAAGGT+TGG 0.630694 5_1:-27917083 Msa0726640:CDS
ATTGCAATTGAAGCAGCCAA+AGG 0.635712 5_1:+27918546 None:intergenic
TGAACTAATTTAATTAGACG+TGG 0.641392 5_1:-27916885 Msa0726640:three_prime_UTR
CGTTTGAGGAAGTCAATCTG+AGG 0.656409 5_1:+27918010 None:intergenic
AGAACAAGTACTGCTTACGA+GGG 0.671236 5_1:-27917172 Msa0726640:CDS
ATAGGCAGCAGTGTAGAGAG+GGG 0.674164 5_1:-27918754 Msa0726640:five_prime_UTR
AAGATTTAAAGAGACACCCC+TGG 0.680049 5_1:-27917846 Msa0726640:CDS
AGCAGAGGGAATGACTCCAG+AGG 0.703314 5_1:-27917123 Msa0726640:CDS
GAACAAGTACTGCTTACGAG+GGG 0.743478 5_1:-27917171 Msa0726640:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATATTGTTTTTGAAAA+AGG - chr5_1:27918612-27918631 Msa0726640:CDS 10.0%
!!! AAATATATTGTTTTTGAAAA+AGG - chr5_1:27918612-27918631 Msa0726640:CDS 10.0%
!! TAATGTCCAATTAAAAAAAT+TGG - chr5_1:27917991-27918010 Msa0726640:intron 15.0%
!! AATTAATCATATAAGTAACT+AGG - chr5_1:27918102-27918121 Msa0726640:intron 15.0%
!! TTTGAATGGTTAATATATTT+CGG - chr5_1:27918241-27918260 Msa0726640:intron 15.0%
!! TAATGTCCAATTAAAAAAAT+TGG - chr5_1:27917991-27918010 Msa0726640:intron 15.0%
!! AATTAATCATATAAGTAACT+AGG - chr5_1:27918102-27918121 Msa0726640:intron 15.0%
!! TTTGAATGGTTAATATATTT+CGG - chr5_1:27918241-27918260 Msa0726640:intron 15.0%
!! TTACAACATTCTTCAAAAAT+CGG - chr5_1:27917033-27917052 Msa0726640:three_prime_UTR 20.0%
!! CTTTAATTCTTAAGAATCAT+AGG + chr5_1:27917415-27917434 None:intergenic 20.0%
!! AGTTTCATTTCATGAAATTT+AGG + chr5_1:27917671-27917690 None:intergenic 20.0%
!! ATTGACAAAAATGTAAGAAT+TGG - chr5_1:27918155-27918174 Msa0726640:intron 20.0%
!!! TATAGAAAGGAAAATGTTTT+AGG - chr5_1:27918572-27918591 Msa0726640:CDS 20.0%
!! TTACAACATTCTTCAAAAAT+CGG - chr5_1:27917033-27917052 Msa0726640:three_prime_UTR 20.0%
!! CTTTAATTCTTAAGAATCAT+AGG + chr5_1:27917415-27917434 None:intergenic 20.0%
!! AGTTTCATTTCATGAAATTT+AGG + chr5_1:27917671-27917690 None:intergenic 20.0%
!! ATTGACAAAAATGTAAGAAT+TGG - chr5_1:27918155-27918174 Msa0726640:intron 20.0%
!!! TATAGAAAGGAAAATGTTTT+AGG - chr5_1:27918572-27918591 Msa0726640:CDS 20.0%
!! TAAGATAGTTTGAGTTAGTT+AGG - chr5_1:27917290-27917309 Msa0726640:intron 25.0%
!! AAGATAGTTTGAGTTAGTTA+GGG - chr5_1:27917291-27917310 Msa0726640:intron 25.0%
! AAATTGTGTATGAGAAATGT+TGG + chr5_1:27917950-27917969 None:intergenic 25.0%
! AACATTTCTCATACACAATT+TGG - chr5_1:27917949-27917968 Msa0726640:intron 25.0%
! TCCAATTAAAAAAATTGGCT+CGG - chr5_1:27917996-27918015 Msa0726640:intron 25.0%
! TAGCCTAAAAAAATGATAAG+AGG + chr5_1:27918077-27918096 None:intergenic 25.0%
!! TTTTGTCAATATAAGAAGAC+AGG + chr5_1:27918145-27918164 None:intergenic 25.0%
! CTCACAAAAAAGAATATTAC+AGG + chr5_1:27918194-27918213 None:intergenic 25.0%
!!! ACCATGACTTTATTTTTGAA+TGG - chr5_1:27918227-27918246 Msa0726640:intron 25.0%
! ACCATTCAAAAATAAAGTCA+TGG + chr5_1:27918231-27918250 None:intergenic 25.0%
! TTAGATCCTATTATTTGTCT+CGG - chr5_1:27918312-27918331 Msa0726640:intron 25.0%
! TTAATACCGAGACAAATAAT+AGG + chr5_1:27918321-27918340 None:intergenic 25.0%
!! CCTAAAATTGTTTCTTCAAT+TGG + chr5_1:27918670-27918689 None:intergenic 25.0%
!! CCAATTGAAGAAACAATTTT+AGG - chr5_1:27918667-27918686 Msa0726640:CDS 25.0%
!!! ATATTTTGAAACTATGCAAC+AGG + chr5_1:27918693-27918712 None:intergenic 25.0%
! TGAACTAATTTAATTAGACG+TGG - chr5_1:27918719-27918738 Msa0726640:exon 25.0%
!! TAAGATAGTTTGAGTTAGTT+AGG - chr5_1:27917290-27917309 Msa0726640:intron 25.0%
!! AAGATAGTTTGAGTTAGTTA+GGG - chr5_1:27917291-27917310 Msa0726640:intron 25.0%
! AAATTGTGTATGAGAAATGT+TGG + chr5_1:27917950-27917969 None:intergenic 25.0%
! AACATTTCTCATACACAATT+TGG - chr5_1:27917949-27917968 Msa0726640:intron 25.0%
! TCCAATTAAAAAAATTGGCT+CGG - chr5_1:27917996-27918015 Msa0726640:intron 25.0%
! TAGCCTAAAAAAATGATAAG+AGG + chr5_1:27918077-27918096 None:intergenic 25.0%
!! TTTTGTCAATATAAGAAGAC+AGG + chr5_1:27918145-27918164 None:intergenic 25.0%
! CTCACAAAAAAGAATATTAC+AGG + chr5_1:27918194-27918213 None:intergenic 25.0%
!!! ACCATGACTTTATTTTTGAA+TGG - chr5_1:27918227-27918246 Msa0726640:intron 25.0%
! ACCATTCAAAAATAAAGTCA+TGG + chr5_1:27918231-27918250 None:intergenic 25.0%
! TTAGATCCTATTATTTGTCT+CGG - chr5_1:27918312-27918331 Msa0726640:intron 25.0%
! TTAATACCGAGACAAATAAT+AGG + chr5_1:27918321-27918340 None:intergenic 25.0%
!! CCTAAAATTGTTTCTTCAAT+TGG + chr5_1:27918670-27918689 None:intergenic 25.0%
!! CCAATTGAAGAAACAATTTT+AGG - chr5_1:27918667-27918686 Msa0726640:CDS 25.0%
!!! ATATTTTGAAACTATGCAAC+AGG + chr5_1:27918693-27918712 None:intergenic 25.0%
! TGAACTAATTTAATTAGACG+TGG - chr5_1:27918719-27918738 Msa0726640:exon 25.0%
AAACCAATCATCATCATCAT+GGG - chr5_1:27916878-27916897 Msa0726640:three_prime_UTR 30.0%
! AATGAAAGATGGTAATGAAG+AGG + chr5_1:27916906-27916925 None:intergenic 30.0%
GTAAGAATGATGAGAAGATA+AGG + chr5_1:27917017-27917036 None:intergenic 30.0%
ATATGAGATAGAGATAGCAT+AGG + chr5_1:27917368-27917387 None:intergenic 30.0%
TGAAACCATTAAAACGTTTG+AGG + chr5_1:27917611-27917630 None:intergenic 30.0%
CACAACATGTTATAAGAGTT+TGG + chr5_1:27917638-27917657 None:intergenic 30.0%
! CATTTTCAGCATATTTCTTC+TGG + chr5_1:27917734-27917753 None:intergenic 30.0%
CATATCAACATAGCACTTTA+GGG + chr5_1:27917909-27917928 None:intergenic 30.0%
ACATATCAACATAGCACTTT+AGG + chr5_1:27917910-27917929 None:intergenic 30.0%
! AAAGTGCTATGTTGATATGT+CGG - chr5_1:27917910-27917929 Msa0726640:intron 30.0%
!!! TCCGAGCCAATTTTTTTAAT+TGG + chr5_1:27918000-27918019 None:intergenic 30.0%
!!! GAGCCTCTTATCATTTTTTT+AGG - chr5_1:27918071-27918090 Msa0726640:CDS 30.0%
CAAATTCATAGCAATGTTGA+AGG - chr5_1:27918511-27918530 Msa0726640:intron 30.0%
!!! ATATTTTGAAACTCTGCAAC+AGG + chr5_1:27918598-27918617 None:intergenic 30.0%
!! AAAGCACAGTTTTGACATAT+TGG - chr5_1:27918638-27918657 Msa0726640:CDS 30.0%
!! ACGTGGATTATTTCTATGTA+TGG - chr5_1:27918736-27918755 Msa0726640:five_prime_UTR 30.0%
AAACCAATCATCATCATCAT+GGG - chr5_1:27916878-27916897 Msa0726640:three_prime_UTR 30.0%
! AATGAAAGATGGTAATGAAG+AGG + chr5_1:27916906-27916925 None:intergenic 30.0%
GTAAGAATGATGAGAAGATA+AGG + chr5_1:27917017-27917036 None:intergenic 30.0%
ATATGAGATAGAGATAGCAT+AGG + chr5_1:27917368-27917387 None:intergenic 30.0%
TGAAACCATTAAAACGTTTG+AGG + chr5_1:27917611-27917630 None:intergenic 30.0%
CACAACATGTTATAAGAGTT+TGG + chr5_1:27917638-27917657 None:intergenic 30.0%
! CATTTTCAGCATATTTCTTC+TGG + chr5_1:27917734-27917753 None:intergenic 30.0%
CATATCAACATAGCACTTTA+GGG + chr5_1:27917909-27917928 None:intergenic 30.0%
ACATATCAACATAGCACTTT+AGG + chr5_1:27917910-27917929 None:intergenic 30.0%
! AAAGTGCTATGTTGATATGT+CGG - chr5_1:27917910-27917929 Msa0726640:intron 30.0%
!!! TCCGAGCCAATTTTTTTAAT+TGG + chr5_1:27918000-27918019 None:intergenic 30.0%
!!! GAGCCTCTTATCATTTTTTT+AGG - chr5_1:27918071-27918090 Msa0726640:CDS 30.0%
CAAATTCATAGCAATGTTGA+AGG - chr5_1:27918511-27918530 Msa0726640:intron 30.0%
!!! ATATTTTGAAACTCTGCAAC+AGG + chr5_1:27918598-27918617 None:intergenic 30.0%
!! AAAGCACAGTTTTGACATAT+TGG - chr5_1:27918638-27918657 Msa0726640:CDS 30.0%
!! ACGTGGATTATTTCTATGTA+TGG - chr5_1:27918736-27918755 Msa0726640:five_prime_UTR 30.0%
! CATGATGATGATGATTGGTT+TGG + chr5_1:27916879-27916898 None:intergenic 35.0%
CAAACCAATCATCATCATCA+TGG - chr5_1:27916877-27916896 Msa0726640:three_prime_UTR 35.0%
GTGGAAATCTGAATGAAAGA+TGG + chr5_1:27916917-27916936 None:intergenic 35.0%
! ATTGCTGAGTTTTTCACAGA+AGG + chr5_1:27916939-27916958 None:intergenic 35.0%
! TCTTCAAAAATCGGTTCCTT+TGG - chr5_1:27917042-27917061 Msa0726640:three_prime_UTR 35.0%
CTTCAATTGCAATTCTTCTC+TGG - chr5_1:27917068-27917087 Msa0726640:exon 35.0%
! TGGTAAAAGGTTACTTTACC+TGG + chr5_1:27917100-27917119 None:intergenic 35.0%
CTGCATTAAAGCATGGTAAA+AGG + chr5_1:27917113-27917132 None:intergenic 35.0%
TTCATTAGAGACACATGCTA+AGG - chr5_1:27917155-27917174 Msa0726640:CDS 35.0%
!! TGAGTTAGTTAGGGTTAGTT+AGG - chr5_1:27917300-27917319 Msa0726640:intron 35.0%
TGACGATTATGATTGATCGA+CGG - chr5_1:27917454-27917473 Msa0726640:intron 35.0%
! GACTTCCTCAAACGTTTTAA+TGG - chr5_1:27917603-27917622 Msa0726640:intron 35.0%
! TTGATATGTCGGATACGTTT+TGG - chr5_1:27917921-27917940 Msa0726640:intron 35.0%
ATAAGAGGCTCAATAGATGT+TGG + chr5_1:27918062-27918081 None:intergenic 35.0%
ATCTTTGTGCTTTACTCTTC+AGG - chr5_1:27918393-27918412 Msa0726640:intron 35.0%
!! CACAGTTTTGACATATTGGT+TGG - chr5_1:27918642-27918661 Msa0726640:CDS 35.0%
! CATGATGATGATGATTGGTT+TGG + chr5_1:27916879-27916898 None:intergenic 35.0%
CAAACCAATCATCATCATCA+TGG - chr5_1:27916877-27916896 Msa0726640:three_prime_UTR 35.0%
GTGGAAATCTGAATGAAAGA+TGG + chr5_1:27916917-27916936 None:intergenic 35.0%
! ATTGCTGAGTTTTTCACAGA+AGG + chr5_1:27916939-27916958 None:intergenic 35.0%
! TCTTCAAAAATCGGTTCCTT+TGG - chr5_1:27917042-27917061 Msa0726640:three_prime_UTR 35.0%
CTTCAATTGCAATTCTTCTC+TGG - chr5_1:27917068-27917087 Msa0726640:exon 35.0%
! TGGTAAAAGGTTACTTTACC+TGG + chr5_1:27917100-27917119 None:intergenic 35.0%
CTGCATTAAAGCATGGTAAA+AGG + chr5_1:27917113-27917132 None:intergenic 35.0%
TTCATTAGAGACACATGCTA+AGG - chr5_1:27917155-27917174 Msa0726640:CDS 35.0%
!! TGAGTTAGTTAGGGTTAGTT+AGG - chr5_1:27917300-27917319 Msa0726640:intron 35.0%
TGACGATTATGATTGATCGA+CGG - chr5_1:27917454-27917473 Msa0726640:intron 35.0%
! GACTTCCTCAAACGTTTTAA+TGG - chr5_1:27917603-27917622 Msa0726640:intron 35.0%
! TTGATATGTCGGATACGTTT+TGG - chr5_1:27917921-27917940 Msa0726640:intron 35.0%
ATAAGAGGCTCAATAGATGT+TGG + chr5_1:27918062-27918081 None:intergenic 35.0%
ATCTTTGTGCTTTACTCTTC+AGG - chr5_1:27918393-27918412 Msa0726640:intron 35.0%
!! CACAGTTTTGACATATTGGT+TGG - chr5_1:27918642-27918661 Msa0726640:CDS 35.0%
! GAACCCATGATGATGATGAT+TGG + chr5_1:27916884-27916903 None:intergenic 40.0%
ACTCAGCAATCCTCAAAAGA+AGG - chr5_1:27916949-27916968 Msa0726640:three_prime_UTR 40.0%
! CCAAACTGAACCTTCTTTTG+AGG + chr5_1:27916962-27916981 None:intergenic 40.0%
CCTCAAAAGAAGGTTCAGTT+TGG - chr5_1:27916959-27916978 Msa0726640:three_prime_UTR 40.0%
ATTGCAATTGAAGCAGCCAA+AGG + chr5_1:27917061-27917080 None:intergenic 40.0%
TTGCATGCTGCATTAAAGCA+TGG + chr5_1:27917120-27917139 None:intergenic 40.0%
!!! TCTTATTTTGCAGCACATGC+TGG - chr5_1:27917522-27917541 Msa0726640:intron 40.0%
AAGATTTAAAGAGACACCCC+TGG - chr5_1:27917758-27917777 Msa0726640:intron 40.0%
ATAGGATCTAATGCACACAC+CGG + chr5_1:27918303-27918322 None:intergenic 40.0%
! AGAACAAGTACTGCTTACGA+GGG - chr5_1:27918432-27918451 Msa0726640:intron 40.0%
CATAGCAATGTTGAAGGAGA+AGG - chr5_1:27918517-27918536 Msa0726640:intron 40.0%
TGCAGCTAGAGCATATAGAA+AGG - chr5_1:27918559-27918578 Msa0726640:CDS 40.0%
! GAACCCATGATGATGATGAT+TGG + chr5_1:27916884-27916903 None:intergenic 40.0%
ACTCAGCAATCCTCAAAAGA+AGG - chr5_1:27916949-27916968 Msa0726640:three_prime_UTR 40.0%
! CCAAACTGAACCTTCTTTTG+AGG + chr5_1:27916962-27916981 None:intergenic 40.0%
CCTCAAAAGAAGGTTCAGTT+TGG - chr5_1:27916959-27916978 Msa0726640:three_prime_UTR 40.0%
ATTGCAATTGAAGCAGCCAA+AGG + chr5_1:27917061-27917080 None:intergenic 40.0%
TTGCATGCTGCATTAAAGCA+TGG + chr5_1:27917120-27917139 None:intergenic 40.0%
!!! TCTTATTTTGCAGCACATGC+TGG - chr5_1:27917522-27917541 Msa0726640:intron 40.0%
AAGATTTAAAGAGACACCCC+TGG - chr5_1:27917758-27917777 Msa0726640:intron 40.0%
ATAGGATCTAATGCACACAC+CGG + chr5_1:27918303-27918322 None:intergenic 40.0%
! AGAACAAGTACTGCTTACGA+GGG - chr5_1:27918432-27918451 Msa0726640:intron 40.0%
CATAGCAATGTTGAAGGAGA+AGG - chr5_1:27918517-27918536 Msa0726640:intron 40.0%
TGCAGCTAGAGCATATAGAA+AGG - chr5_1:27918559-27918578 Msa0726640:CDS 40.0%
TGCCTATCAGCTGAACACTT+GGG + chr5_1:27916837-27916856 None:intergenic 45.0%
! GCTGAGTTTTTCACAGAAGG+TGG + chr5_1:27916936-27916955 None:intergenic 45.0%
ATTCTTCTCTGGTCAACTCC+AGG - chr5_1:27917079-27917098 Msa0726640:CDS 45.0%
GGATTCATGTCAGGAATCAC+AGG - chr5_1:27917543-27917562 Msa0726640:intron 45.0%
CGTTTGAGGAAGTCAATCTG+AGG + chr5_1:27917597-27917616 None:intergenic 45.0%
TCAAGCAGTTTCTTCACCAG+GGG + chr5_1:27917777-27917796 None:intergenic 45.0%
CTCAAGCAGTTTCTTCACCA+GGG + chr5_1:27917778-27917797 None:intergenic 45.0%
! CAACATAGCACTTTAGGGAG+AGG + chr5_1:27917904-27917923 None:intergenic 45.0%
!! AAAATTGGCTCGGACCTGTT+AGG - chr5_1:27918006-27918025 Msa0726640:CDS 45.0%
! AGGCTCAATAGATGTTGGCT+CGG + chr5_1:27918057-27918076 None:intergenic 45.0%
GTGTCTCTCTTTGTCCTATC+CGG - chr5_1:27918281-27918300 Msa0726640:intron 45.0%
ATCTAATGCACACACCGGAT+AGG + chr5_1:27918298-27918317 None:intergenic 45.0%
! GAGAACAAGTACTGCTTACG+AGG - chr5_1:27918431-27918450 Msa0726640:intron 45.0%
! GAACAAGTACTGCTTACGAG+GGG - chr5_1:27918433-27918452 Msa0726640:intron 45.0%
!! AGTTGGTGATTGTTCAGCAG+AGG - chr5_1:27918466-27918485 Msa0726640:intron 45.0%
!! GTTGGTGATTGTTCAGCAGA+GGG - chr5_1:27918467-27918486 Msa0726640:intron 45.0%
ATGAATTTGTCCCTTGCCTC+TGG + chr5_1:27918500-27918519 None:intergenic 45.0%
GCAATGTTGAAGGAGAAGGT+TGG - chr5_1:27918521-27918540 Msa0726640:intron 45.0%
TGCCTATCAGCTGAACACTT+GGG + chr5_1:27916837-27916856 None:intergenic 45.0%
! GCTGAGTTTTTCACAGAAGG+TGG + chr5_1:27916936-27916955 None:intergenic 45.0%
ATTCTTCTCTGGTCAACTCC+AGG - chr5_1:27917079-27917098 Msa0726640:CDS 45.0%
GGATTCATGTCAGGAATCAC+AGG - chr5_1:27917543-27917562 Msa0726640:intron 45.0%
CGTTTGAGGAAGTCAATCTG+AGG + chr5_1:27917597-27917616 None:intergenic 45.0%
TCAAGCAGTTTCTTCACCAG+GGG + chr5_1:27917777-27917796 None:intergenic 45.0%
CTCAAGCAGTTTCTTCACCA+GGG + chr5_1:27917778-27917797 None:intergenic 45.0%
! CAACATAGCACTTTAGGGAG+AGG + chr5_1:27917904-27917923 None:intergenic 45.0%
!! AAAATTGGCTCGGACCTGTT+AGG - chr5_1:27918006-27918025 Msa0726640:CDS 45.0%
! AGGCTCAATAGATGTTGGCT+CGG + chr5_1:27918057-27918076 None:intergenic 45.0%
GTGTCTCTCTTTGTCCTATC+CGG - chr5_1:27918281-27918300 Msa0726640:intron 45.0%
ATCTAATGCACACACCGGAT+AGG + chr5_1:27918298-27918317 None:intergenic 45.0%
! GAGAACAAGTACTGCTTACG+AGG - chr5_1:27918431-27918450 Msa0726640:intron 45.0%
! GAACAAGTACTGCTTACGAG+GGG - chr5_1:27918433-27918452 Msa0726640:intron 45.0%
!! AGTTGGTGATTGTTCAGCAG+AGG - chr5_1:27918466-27918485 Msa0726640:intron 45.0%
!! GTTGGTGATTGTTCAGCAGA+GGG - chr5_1:27918467-27918486 Msa0726640:intron 45.0%
ATGAATTTGTCCCTTGCCTC+TGG + chr5_1:27918500-27918519 None:intergenic 45.0%
GCAATGTTGAAGGAGAAGGT+TGG - chr5_1:27918521-27918540 Msa0726640:intron 45.0%
TAAGGGGCAGCAGAGATACA+AGG + chr5_1:27916790-27916809 None:intergenic 50.0%
AGCAAAGGACGGGGAGATAA+GGG + chr5_1:27916807-27916826 None:intergenic 50.0%
AAGCAAAGGACGGGGAGATA+AGG + chr5_1:27916808-27916827 None:intergenic 50.0%
TGGGAGTTGGAAGCAAAGGA+CGG + chr5_1:27916818-27916837 None:intergenic 50.0%
CACTTGGGAGTTGGAAGCAA+AGG + chr5_1:27916822-27916841 None:intergenic 50.0%
TCAGCTGAACACTTGGGAGT+TGG + chr5_1:27916831-27916850 None:intergenic 50.0%
CTCCCAAGTGTTCAGCTGAT+AGG - chr5_1:27916832-27916851 Msa0726640:three_prime_UTR 50.0%
CTGCCTATCAGCTGAACACT+TGG + chr5_1:27916838-27916857 None:intergenic 50.0%
TGATAGGCAGCAGTGTAGAG+AGG - chr5_1:27916848-27916867 Msa0726640:three_prime_UTR 50.0%
GATAGGCAGCAGTGTAGAGA+GGG - chr5_1:27916849-27916868 Msa0726640:three_prime_UTR 50.0%
ATAGGCAGCAGTGTAGAGAG+GGG - chr5_1:27916850-27916869 Msa0726640:three_prime_UTR 50.0%
GCACATGCTGGATTCATGTC+AGG - chr5_1:27917534-27917553 Msa0726640:intron 50.0%
ACAGGACTAGAGTCTGTACC+TGG - chr5_1:27917561-27917580 Msa0726640:intron 50.0%
! AAGTCAATCTGAGGCAGCTC+AGG + chr5_1:27917588-27917607 None:intergenic 50.0%
GCTCAAGCAGTTTCTTCACC+AGG + chr5_1:27917779-27917798 None:intergenic 50.0%
GTGTCCAAGACATGCCTAAC+AGG + chr5_1:27918023-27918042 None:intergenic 50.0%
CAAAGAGAGACACCGCAACA+CGG + chr5_1:27918274-27918293 None:intergenic 50.0%
TAAGGGGCAGCAGAGATACA+AGG + chr5_1:27916790-27916809 None:intergenic 50.0%
AGCAAAGGACGGGGAGATAA+GGG + chr5_1:27916807-27916826 None:intergenic 50.0%
AAGCAAAGGACGGGGAGATA+AGG + chr5_1:27916808-27916827 None:intergenic 50.0%
TGGGAGTTGGAAGCAAAGGA+CGG + chr5_1:27916818-27916837 None:intergenic 50.0%
CACTTGGGAGTTGGAAGCAA+AGG + chr5_1:27916822-27916841 None:intergenic 50.0%
TCAGCTGAACACTTGGGAGT+TGG + chr5_1:27916831-27916850 None:intergenic 50.0%
CTCCCAAGTGTTCAGCTGAT+AGG - chr5_1:27916832-27916851 Msa0726640:three_prime_UTR 50.0%
CTGCCTATCAGCTGAACACT+TGG + chr5_1:27916838-27916857 None:intergenic 50.0%
TGATAGGCAGCAGTGTAGAG+AGG - chr5_1:27916848-27916867 Msa0726640:three_prime_UTR 50.0%
GATAGGCAGCAGTGTAGAGA+GGG - chr5_1:27916849-27916868 Msa0726640:three_prime_UTR 50.0%
ATAGGCAGCAGTGTAGAGAG+GGG - chr5_1:27916850-27916869 Msa0726640:three_prime_UTR 50.0%
GCACATGCTGGATTCATGTC+AGG - chr5_1:27917534-27917553 Msa0726640:intron 50.0%
ACAGGACTAGAGTCTGTACC+TGG - chr5_1:27917561-27917580 Msa0726640:intron 50.0%
! AAGTCAATCTGAGGCAGCTC+AGG + chr5_1:27917588-27917607 None:intergenic 50.0%
GCTCAAGCAGTTTCTTCACC+AGG + chr5_1:27917779-27917798 None:intergenic 50.0%
GTGTCCAAGACATGCCTAAC+AGG + chr5_1:27918023-27918042 None:intergenic 50.0%
CAAAGAGAGACACCGCAACA+CGG + chr5_1:27918274-27918293 None:intergenic 50.0%
GCAAAGGACGGGGAGATAAG+GGG + chr5_1:27916806-27916825 None:intergenic 55.0%
GGAGTTGGAAGCAAAGGACG+GGG + chr5_1:27916816-27916835 None:intergenic 55.0%
GGGAGTTGGAAGCAAAGGAC+GGG + chr5_1:27916817-27916836 None:intergenic 55.0%
GGTGTCTGTGCTGTGCTCAT+AGG + chr5_1:27917883-27917902 None:intergenic 55.0%
CGGACCTGTTAGGCATGTCT+TGG - chr5_1:27918016-27918035 Msa0726640:CDS 55.0%
TTCGGACACAAGCCGTGTTG+CGG - chr5_1:27918259-27918278 Msa0726640:intron 55.0%
! CAAGTACTGCTTACGAGGGG+CGG - chr5_1:27918436-27918455 Msa0726640:intron 55.0%
AGCAGAGGGAATGACTCCAG+AGG - chr5_1:27918481-27918500 Msa0726640:intron 55.0%
AGGGAATGACTCCAGAGGCA+AGG - chr5_1:27918486-27918505 Msa0726640:intron 55.0%
GGGAATGACTCCAGAGGCAA+GGG - chr5_1:27918487-27918506 Msa0726640:intron 55.0%
GCAAAGGACGGGGAGATAAG+GGG + chr5_1:27916806-27916825 None:intergenic 55.0%
GGAGTTGGAAGCAAAGGACG+GGG + chr5_1:27916816-27916835 None:intergenic 55.0%
GGGAGTTGGAAGCAAAGGAC+GGG + chr5_1:27916817-27916836 None:intergenic 55.0%
GGTGTCTGTGCTGTGCTCAT+AGG + chr5_1:27917883-27917902 None:intergenic 55.0%
CGGACCTGTTAGGCATGTCT+TGG - chr5_1:27918016-27918035 Msa0726640:CDS 55.0%
TTCGGACACAAGCCGTGTTG+CGG - chr5_1:27918259-27918278 Msa0726640:intron 55.0%
! CAAGTACTGCTTACGAGGGG+CGG - chr5_1:27918436-27918455 Msa0726640:intron 55.0%
AGCAGAGGGAATGACTCCAG+AGG - chr5_1:27918481-27918500 Msa0726640:intron 55.0%
AGGGAATGACTCCAGAGGCA+AGG - chr5_1:27918486-27918505 Msa0726640:intron 55.0%
GGGAATGACTCCAGAGGCAA+GGG - chr5_1:27918487-27918506 Msa0726640:intron 55.0%
! ATCTGAGGCAGCTCAGGACC+AGG + chr5_1:27917582-27917601 None:intergenic 60.0%
ACTGCTTACGAGGGGCGGAA+TGG - chr5_1:27918441-27918460 Msa0726640:intron 60.0%
CTGCTTACGAGGGGCGGAAT+GGG - chr5_1:27918442-27918461 Msa0726640:intron 60.0%
TGCTTACGAGGGGCGGAATG+GGG - chr5_1:27918443-27918462 Msa0726640:intron 60.0%
! ATCTGAGGCAGCTCAGGACC+AGG + chr5_1:27917582-27917601 None:intergenic 60.0%
ACTGCTTACGAGGGGCGGAA+TGG - chr5_1:27918441-27918460 Msa0726640:intron 60.0%
CTGCTTACGAGGGGCGGAAT+GGG - chr5_1:27918442-27918461 Msa0726640:intron 60.0%
TGCTTACGAGGGGCGGAATG+GGG - chr5_1:27918443-27918462 Msa0726640:intron 60.0%
CGAGGGGCGGAATGGGGAGT+TGG - chr5_1:27918449-27918468 Msa0726640:intron 70.0%
CGAGGGGCGGAATGGGGAGT+TGG - chr5_1:27918449-27918468 Msa0726640:intron 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 27916781 27918845 27916781 ID=Msa0726640;Name=Msa0726640
chr5_1 mRNA 27916781 27918845 27916781 ID=Msa0726640-mRNA-1;Parent=Msa0726640;Name=Msa0726640-mRNA-1;_AED=0.06;_eAED=0.06;_QI=115|1|1|1|1|1|4|292|176
chr5_1 exon 27916781 27917211 27916781 ID=Msa0726640-mRNA-1:exon:9750;Parent=Msa0726640-mRNA-1
chr5_1 exon 27917806 27917902 27917806 ID=Msa0726640-mRNA-1:exon:9749;Parent=Msa0726640-mRNA-1
chr5_1 exon 27918002 27918091 27918002 ID=Msa0726640-mRNA-1:exon:9748;Parent=Msa0726640-mRNA-1
chr5_1 exon 27918526 27918845 27918526 ID=Msa0726640-mRNA-1:exon:9747;Parent=Msa0726640-mRNA-1
chr5_1 five_prime_UTR 27918731 27918845 27918731 ID=Msa0726640-mRNA-1:five_prime_utr;Parent=Msa0726640-mRNA-1
chr5_1 CDS 27918526 27918730 27918526 ID=Msa0726640-mRNA-1:cds;Parent=Msa0726640-mRNA-1
chr5_1 CDS 27918002 27918091 27918002 ID=Msa0726640-mRNA-1:cds;Parent=Msa0726640-mRNA-1
chr5_1 CDS 27917806 27917902 27917806 ID=Msa0726640-mRNA-1:cds;Parent=Msa0726640-mRNA-1
chr5_1 CDS 27917073 27917211 27917073 ID=Msa0726640-mRNA-1:cds;Parent=Msa0726640-mRNA-1
chr5_1 three_prime_UTR 27916781 27917072 27916781 ID=Msa0726640-mRNA-1:three_prime_utr;Parent=Msa0726640-mRNA-1
Gene Sequence

>Msa0726640

ATGGGTTCCTCTTCATTACCATCTTTCATTCAGATTTCCACCTTCTGTGAAAAACTCAGCAATCCTCAAAAGAAGGTTCAGTTTGGAATAACAAAAAATGATACAAAGTTTTCTTGCTCCTTATCTTCTCATCATTCTTACAACATTCTTCAAAAATCGGTTCCTTTGGCTGCTTCAATTGCAATTCTTCTCTGGTCAACTCCAGCACATGCTGGATTCATGTCAGGAATCACAGGACTAGAGTCTGTACCTGGTCCTGAGCTGCCTCAGATTGACTTCCTCAAACGTTTTAATGAAGAAAACCAGAAGAAATATGCTGAAAATGATGCAAGATTTAAAGAGACACCCCTGGTGAAGAAACTGCTTGAGCAATCTAAGTTGAATAAAGAGAAGAATAGTAAAGAAATTGAGAACAAGTACTGCTTACGAGGGGCGGAATGGGGAGTTGGTGATTGTTCAGCAGAGGGAATGACTCCAGAGGCAAGGGACAAATTCATAGCAATGTTGAAGGAGAAGGTTGGAGAAAAGTAA

Protein sequence

>Msa0726640

MGSSSLPSFIQISTFCEKLSNPQKKVQFGITKNDTKFSCSLSSHHSYNILQKSVPLAASIAILLWSTPAHAGFMSGITGLESVPGPELPQIDFLKRFNEENQKKYAENDARFKETPLVKKLLEQSKLNKEKNSKEIENKYCLRGAEWGVGDCSAEGMTPEARDKFIAMLKEKVGEK*