AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0256070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0256070 MtrunA17_Chr2g0317401 97.538 325 8 0 1 325 1 325 0.0 649
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0256070 AT1G53120.1 63.804 326 103 5 6 325 4 320 7.19e-149 421
Msa0256070 AT1G53120.2 63.804 326 102 6 6 325 4 319 4.44e-147 417

Find 83 sgRNAs with CRISPR-Local

Find 416 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACTTCCTTGGCTCAATTCT+TGG 0.207293 2_2:-50615786 Msa0256070:CDS
GTTCTTTGCTCTTCTCTTCC+AGG 0.220937 2_2:+50612184 None:intergenic
TAGTGGATTGGGAAGATTAA+AGG 0.272114 2_2:-50612501 Msa0256070:intron
GTGATAGGTTCCATATGATA+TGG 0.300702 2_2:+50618644 None:intergenic
TGTGATCAAATAAGCATATA+TGG 0.320912 2_2:+50612239 None:intergenic
GGTATCTTGGTGCAAGTTAC+AGG 0.327096 2_2:+50613517 None:intergenic
CAGTTTGAACCTTGCTCTCA+TGG 0.330450 2_2:-50615810 Msa0256070:CDS
GGATCACTTGTCAGTTCATC+TGG 0.343082 2_2:+50615967 None:intergenic
TGCTCTCATGGTGACTTCCT+TGG 0.363969 2_2:-50615798 Msa0256070:CDS
GAACAGATTTCAATGTATAA+TGG 0.368359 2_2:-50612165 Msa0256070:three_prime_UTR
CCTTGTTACCCAGGGAGAAC+AGG 0.372665 2_2:-50614944 Msa0256070:intron
ATGTATTGCTCAAGGGAGTT+GGG 0.373857 2_2:-50616500 Msa0256070:CDS
AAGTGATCCAGATGTTATTT+CGG 0.379461 2_2:-50615953 Msa0256070:CDS
CTTGTATCAGTTAGTGGATT+GGG 0.386024 2_2:-50612512 Msa0256070:CDS
ATCACATTACATTGCTTATG+TGG 0.393777 2_2:-50612222 Msa0256070:three_prime_UTR
AGTTGGGGATATTATATTGC+AGG 0.396380 2_2:-50615742 Msa0256070:intron
CGAAGCTAGTTGACATGATC+AGG 0.398418 2_2:-50613294 Msa0256070:intron
TCATAATCAAGAGAAATTAA+TGG 0.400281 2_2:+50613496 None:intergenic
GAATTGTCAGGGAGAAAGTT+GGG 0.409360 2_2:-50615758 Msa0256070:CDS
AAGAGAAATTAATGGTATCT+TGG 0.414759 2_2:+50613504 None:intergenic
TCTTGCGTCAGCACTGGATA+AGG 0.420014 2_2:-50614884 Msa0256070:intron
GGAGATCTTGTATCAGTTAG+TGG 0.420203 2_2:-50612518 Msa0256070:CDS
GCTGCAACTACCACTAGCTT+TGG 0.424137 2_2:-50618607 Msa0256070:CDS
CTCTTTAGGCTGAACGGTGC+CGG 0.424686 2_2:-50616005 Msa0256070:intron
CTTGGCTCAATTCTTGGTAC+AGG 0.426476 2_2:-50615780 Msa0256070:CDS
GATGTATTGCTCAAGGGAGT+TGG 0.427872 2_2:-50616501 Msa0256070:CDS
AGGAGAGAAGATGAGAGGTA+AGG 0.433483 2_2:+50618488 None:intergenic
GAGGGGTTAGAAAATTTGTA+TGG 0.436886 2_2:+50616191 None:intergenic
GAAGTAAACACCACAAAGAA+AGG 0.438769 2_2:-50612365 Msa0256070:CDS
CTCAATGCCGAAATAACATC+TGG 0.441188 2_2:+50615946 None:intergenic
TTCTCTTCCAGGTTTGAACT+TGG 0.443257 2_2:+50612195 None:intergenic
AAAAGAATCTATGCAAGTAT+TGG 0.445890 2_2:-50616161 Msa0256070:CDS
CATGAGAGCAAGGTTCAAAC+TGG 0.449126 2_2:+50615811 None:intergenic
CCATGGCGAATATGAGTGAT+AGG 0.450189 2_2:+50618629 None:intergenic
GTAACCTGAAGAAGTGGAAA+AGG 0.453594 2_2:+50618468 None:intergenic
TGGATCCCAATTACTACAAA+AGG 0.454338 2_2:-50612557 Msa0256070:CDS
ATGGCAATGTACGTATCAAC+TGG 0.455317 2_2:-50612577 Msa0256070:CDS
TTCTTGGTACAGGAATTGTC+AGG 0.461050 2_2:-50615770 Msa0256070:CDS
ACACACATACCCATATCATA+TGG 0.465023 2_2:-50618654 Msa0256070:five_prime_UTR
CTGGATGTCCAACAGAAATC+CGG 0.476765 2_2:+50615986 None:intergenic
AGAATTTCTTGCGTCAGCAC+TGG 0.477119 2_2:-50614890 Msa0256070:CDS
GAACGGTGCCGGATTTCTGT+TGG 0.493515 2_2:-50615994 Msa0256070:CDS
TAGAGAGTAACCTGAAGAAG+TGG 0.494138 2_2:+50618462 None:intergenic
TCTTGTATCAGTTAGTGGAT+TGG 0.495279 2_2:-50612513 Msa0256070:CDS
GTTGATGCAGTAGCCAGTGC+AGG 0.500484 2_2:-50613334 Msa0256070:CDS
AAATAATTATTGACAATACA+AGG 0.502265 2_2:+50612049 None:intergenic
AATAATTATTTGAATTCCTG+TGG 0.517980 2_2:-50612037 Msa0256070:three_prime_UTR
GGAGAGAAGATGAGAGGTAA+GGG 0.518934 2_2:+50618489 None:intergenic
GCAAGAAATTCTACAAGCTC+TGG 0.522573 2_2:+50614901 None:intergenic
GGACATTTAAATAATAAAAG+AGG 0.526656 2_2:+50612260 None:intergenic
TGAAATCTTAAATCCTGCAC+TGG 0.527319 2_2:+50613321 None:intergenic
GGAATTGTCAGGGAGAAAGT+TGG 0.527589 2_2:-50615759 Msa0256070:CDS
TGATAGGTTCCATATGATAT+GGG 0.532452 2_2:+50618645 None:intergenic
CCACTAGCTTTGGAACTGCT+TGG 0.535075 2_2:-50618597 Msa0256070:CDS
CTCTTGATTATGAACCGCCA+AGG 0.539330 2_2:-50613486 Msa0256070:intron
GGGCCAAGATGTTACCTTGG+CGG 0.539528 2_2:+50613472 None:intergenic
CAGATGTTATTTCGGCATTG+AGG 0.539649 2_2:-50615945 Msa0256070:intron
TGGAATACCAAGTTCAAACC+TGG 0.561544 2_2:-50612202 Msa0256070:three_prime_UTR
AGAGGTTGTTAGCATTGTTG+CGG 0.563507 2_2:+50618524 None:intergenic
AGAAGTTGATGTATTGCTCA+AGG 0.564298 2_2:-50616508 Msa0256070:CDS
CTTGTTACCCAGGGAGAACA+GGG 0.565414 2_2:-50614943 Msa0256070:intron
GCTAGTGGTAGTTGCAGCCA+TGG 0.567257 2_2:+50618612 None:intergenic
AAGATCTCCACTCTTGATTG+TGG 0.570795 2_2:+50612532 None:intergenic
GACATTAAAGCATTAGCTCA+AGG 0.584149 2_2:-50616127 Msa0256070:CDS
GGAAAAGGAGAGAAGATGAG+AGG 0.603841 2_2:+50618483 None:intergenic
TATATGCTCTTTAGGCTGAA+CGG 0.610234 2_2:-50616011 Msa0256070:intron
TGTATTGCTCAAGGGAGTTG+GGG 0.611297 2_2:-50616499 Msa0256070:CDS
AGGAAGTCACCATGAGAGCA+AGG 0.611523 2_2:+50615801 None:intergenic
AGCTCAAGGAGGTTATCCAC+AGG 0.615414 2_2:-50616113 Msa0256070:intron
AAAGAAAGGAAAATTTGCAG+TGG 0.618269 2_2:-50612351 Msa0256070:CDS
TAAGGGTCCTTTGAAAAGAG+AGG 0.622157 2_2:+50618506 None:intergenic
GAAGTTGATGTATTGCTCAA+GGG 0.624002 2_2:-50616507 Msa0256070:CDS
AAAGGAACCACAATCAAGAG+TGG 0.627963 2_2:-50612539 Msa0256070:CDS
TCTTGGTACAGGAATTGTCA+GGG 0.628354 2_2:-50615769 Msa0256070:CDS
CAAACAGAGGAAATGTCCAC+AGG 0.628886 2_2:+50612021 None:intergenic
CCTATCACTCATATTCGCCA+TGG 0.633026 2_2:-50618629 Msa0256070:exon
CCAAGCAGTTCCAAAGCTAG+TGG 0.639165 2_2:+50618597 None:intergenic
AATTGTCAGGGAGAAAGTTG+GGG 0.647375 2_2:-50615757 Msa0256070:CDS
CTGTACCAAGAATTGAGCCA+AGG 0.655995 2_2:+50615781 None:intergenic
TACACTCAAGTACAGTCCTG+TGG 0.662185 2_2:-50612099 Msa0256070:three_prime_UTR
AGTGAAGCATGTTCTTGAGA+TGG 0.664704 2_2:-50616457 Msa0256070:intron
CATTATTGAGGAACAAACAG+AGG 0.672735 2_2:+50612008 None:intergenic
ATTAAAGCATTAGCTCAAGG+AGG 0.699820 2_2:-50616124 Msa0256070:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAAAAAAAAAAAATAGAAA+TGG + chr2_2:50612249-50612268 None:intergenic 10.0%
!!! TTTCTATTTTTTTTTTTTGT+AGG - chr2_2:50612249-50612268 Msa0256070:three_prime_UTR 10.0%
!!! CTTTTTTATAAAATAAATTG+TGG - chr2_2:50612321-50612340 Msa0256070:exon 10.0%
!! ACTGAAAATAAATTAAATAA+TGG + chr2_2:50612375-50612394 None:intergenic 10.0%
!! AAAATAAAATAATTTAATCC+AGG + chr2_2:50615477-50615496 None:intergenic 10.0%
!!! ATGTTTAATTTATTTCATTT+TGG - chr2_2:50618276-50618295 Msa0256070:intron 10.0%
!! TAGCATAAAATGATATATAA+TGG + chr2_2:50614379-50614398 None:intergenic 15.0%
!! TTATCTAAATATACTATGAA+AGG + chr2_2:50614814-50614833 None:intergenic 15.0%
!!! TGATATTTTATATACAACAA+AGG - chr2_2:50615069-50615088 Msa0256070:intron 15.0%
!! ATTTAGTAATATTTATTCAG+AGG + chr2_2:50616027-50616046 None:intergenic 15.0%
!!! ATAAAAGAACTTTTTACTAT+AGG - chr2_2:50616138-50616157 Msa0256070:CDS 15.0%
!! TTGAAATTGTGTTTATAAAT+GGG - chr2_2:50617040-50617059 Msa0256070:intron 15.0%
!! AAATAATTATTGACAATACA+AGG + chr2_2:50618629-50618648 None:intergenic 15.0%
!!! TTTTGAACAATTGAACATAA+TGG + chr2_2:50612294-50612313 None:intergenic 20.0%
!!! TTGTAGTAAAGTTTAAAACT+TGG - chr2_2:50612474-50612493 Msa0256070:intron 20.0%
!! AGTTTCACATTGTTTATTAT+TGG - chr2_2:50613653-50613672 Msa0256070:intron 20.0%
!! TATCTAAATCAAAAACCTTA+AGG + chr2_2:50613728-50613747 None:intergenic 20.0%
!!! TTAAGGTTTTTGATTTAGAT+AGG - chr2_2:50613727-50613746 Msa0256070:intron 20.0%
!!! TAAGGTTTTTGATTTAGATA+GGG - chr2_2:50613728-50613747 Msa0256070:intron 20.0%
!!! TCTTAGCTAAATCATTATTT+TGG - chr2_2:50614057-50614076 Msa0256070:intron 20.0%
!! ACATAATATATATGCTCTTT+AGG - chr2_2:50614656-50614675 Msa0256070:intron 20.0%
!!! TTTTAGGTAAAAGTAGTAAA+TGG + chr2_2:50614975-50614994 None:intergenic 20.0%
!! CTCAAAAAATGTTTATAAGT+GGG - chr2_2:50615336-50615355 Msa0256070:intron 20.0%
!! TGGTCAAATAAAACATATAA+TGG + chr2_2:50615503-50615522 None:intergenic 20.0%
!!! TATGTTTTATTTGACCATTT+TGG - chr2_2:50615506-50615525 Msa0256070:intron 20.0%
!! TCTCTATATCTTTCTTAATT+GGG + chr2_2:50615585-50615604 None:intergenic 20.0%
!! ATCTCTATATCTTTCTTAAT+TGG + chr2_2:50615586-50615605 None:intergenic 20.0%
!! AAAGTTATACAAAATACGAA+GGG + chr2_2:50615701-50615720 None:intergenic 20.0%
!! GATACGTAAATTTATTAAGA+AGG + chr2_2:50615850-50615869 None:intergenic 20.0%
!! AATTTACGTATCAAAACAAA+AGG - chr2_2:50615858-50615877 Msa0256070:intron 20.0%
!!! TAGGAATACAATCTTTTTAT+TGG - chr2_2:50616381-50616400 Msa0256070:intron 20.0%
!! TAGACTAATGTTAGTATATT+AGG - chr2_2:50616405-50616424 Msa0256070:intron 20.0%
!! TTTATAATTGTGTTCCTAAA+GGG + chr2_2:50616511-50616530 None:intergenic 20.0%
!!! TTTTATAATTGTGTTCCTAA+AGG + chr2_2:50616512-50616531 None:intergenic 20.0%
!! TATTGATCAAATCATTGAAA+AGG - chr2_2:50616831-50616850 Msa0256070:intron 20.0%
!! CTTGAAATTGTGTTTATAAA+TGG - chr2_2:50617039-50617058 Msa0256070:intron 20.0%
!! TCATAATCAAGAGAAATTAA+TGG + chr2_2:50617182-50617201 None:intergenic 20.0%
!! CATCATATATACACAAATTA+GGG + chr2_2:50617415-50617434 None:intergenic 20.0%
!! ACATCATATATACACAAATT+AGG + chr2_2:50617416-50617435 None:intergenic 20.0%
!! ACATAACATAAGTCAATATA+TGG - chr2_2:50617566-50617585 Msa0256070:intron 20.0%
!! CATTAAATTTATGCTCTATT+TGG + chr2_2:50617830-50617849 None:intergenic 20.0%
!! GGACATTTAAATAATAAAAG+AGG + chr2_2:50618418-50618437 None:intergenic 20.0%
!! AATAATTATTTGAATTCCTG+TGG - chr2_2:50618638-50618657 Msa0256070:five_prime_UTR 20.0%
!!! TTTTGTAGGTTGATTCTATT+TGG - chr2_2:50612263-50612282 Msa0256070:three_prime_UTR 25.0%
! TGATGAATATATTGCTGAAT+TGG - chr2_2:50612433-50612452 Msa0256070:intron 25.0%
! CTTATAGATAAGCACTTATA+TGG + chr2_2:50612687-50612706 None:intergenic 25.0%
!!! TTTTGATTTTAGGGTTTGTT+TGG + chr2_2:50612883-50612902 None:intergenic 25.0%
!!! AGCACTTCATTTTGATTTTA+GGG + chr2_2:50612892-50612911 None:intergenic 25.0%
!!! AAGCACTTCATTTTGATTTT+AGG + chr2_2:50612893-50612912 None:intergenic 25.0%
! TTCAAACTTAAGTTTCTACT+TGG + chr2_2:50612964-50612983 None:intergenic 25.0%
!! TTCACTTTCCTAAAGTATTA+TGG - chr2_2:50613101-50613120 Msa0256070:intron 25.0%
! TTATATGGAATGAGAATCAA+TGG - chr2_2:50613240-50613259 Msa0256070:intron 25.0%
! TAGTAAGAAAATGGTTAAGA+TGG - chr2_2:50613462-50613481 Msa0256070:intron 25.0%
! AGTAAGAAAATGGTTAAGAT+GGG - chr2_2:50613463-50613482 Msa0256070:intron 25.0%
! ACATTGTTTATTATTGGACA+AGG - chr2_2:50613659-50613678 Msa0256070:intron 25.0%
! TGATTTATCCTTTGATCATT+TGG - chr2_2:50613945-50613964 Msa0256070:intron 25.0%
! AAGCATTAAAAATGTGAAAC+TGG + chr2_2:50614098-50614117 None:intergenic 25.0%
! ATGAAATTTGTATGGATCAA+GGG + chr2_2:50614262-50614281 None:intergenic 25.0%
! AATGAAATTTGTATGGATCA+AGG + chr2_2:50614263-50614282 None:intergenic 25.0%
!! AGTCTAGAATGAAATTTGTA+TGG + chr2_2:50614270-50614289 None:intergenic 25.0%
! AATGATATATAATGGCTCAA+AGG + chr2_2:50614371-50614390 None:intergenic 25.0%
! AAAAGAATCTATGCAAGTAT+TGG - chr2_2:50614514-50614533 Msa0256070:intron 25.0%
!!! CCACTTATAAACATTTTTTG+AGG + chr2_2:50615338-50615357 None:intergenic 25.0%
! CCTCAAAAAATGTTTATAAG+TGG - chr2_2:50615335-50615354 Msa0256070:intron 25.0%
! CAAAGTTATACAAAATACGA+AGG + chr2_2:50615702-50615721 None:intergenic 25.0%
!!! GCAGGAATTTTTTAAAATCT+CGG - chr2_2:50615954-50615973 Msa0256070:CDS 25.0%
! TACTAAATTTCGTAGTTTGA+AGG - chr2_2:50616039-50616058 Msa0256070:intron 25.0%
!! TTTTACTATAGGATCTTAGT+AGG - chr2_2:50616149-50616168 Msa0256070:CDS 25.0%
!! GAAACGTTATTCAAGTTTAA+AGG - chr2_2:50616215-50616234 Msa0256070:CDS 25.0%
! TTAAAGGAAATTATACCGTA+TGG - chr2_2:50616231-50616250 Msa0256070:intron 25.0%
! AAACATGACAAGATAGAATT+AGG - chr2_2:50616362-50616381 Msa0256070:intron 25.0%
! TTATAATTGTGTTCCTAAAG+GGG + chr2_2:50616510-50616529 None:intergenic 25.0%
! CACAATTATAAAACGAAATG+CGG - chr2_2:50616519-50616538 Msa0256070:CDS 25.0%
!! ATCCTTTAACTTAAGTGATT+TGG - chr2_2:50616714-50616733 Msa0256070:intron 25.0%
!! TCCTTTAACTTAAGTGATTT+GGG - chr2_2:50616715-50616734 Msa0256070:intron 25.0%
! AGTAAAGAAAGTAGATCATA+TGG - chr2_2:50616767-50616786 Msa0256070:intron 25.0%
! GTAAAGAAAGTAGATCATAT+GGG - chr2_2:50616768-50616787 Msa0256070:intron 25.0%
! TTCAATTGTTAAAGCCTTAA+AGG - chr2_2:50616797-50616816 Msa0256070:intron 25.0%
! ATAGTTCTTATTCACCTTTA+AGG + chr2_2:50616814-50616833 None:intergenic 25.0%
! GAAAAGGATTCAGATTTAAA+TGG - chr2_2:50616847-50616866 Msa0256070:intron 25.0%
! AGAAAAAAAAACTTTCCATC+AGG + chr2_2:50616937-50616956 None:intergenic 25.0%
! AAGTCATATCACATATAATG+TGG + chr2_2:50617022-50617041 None:intergenic 25.0%
! AAGAGAAATTAATGGTATCT+TGG + chr2_2:50617174-50617193 None:intergenic 25.0%
!!! TTGAATTCTTGATTTGCTTA+TGG - chr2_2:50617449-50617468 Msa0256070:intron 25.0%
! AAGTTATAAAACTTATGAGC+TGG + chr2_2:50617699-50617718 None:intergenic 25.0%
! AAATAAGTGCAAGAAAATCA+AGG + chr2_2:50617902-50617921 None:intergenic 25.0%
!! CTCTTTTGCATGAAATATTT+TGG - chr2_2:50618027-50618046 Msa0256070:intron 25.0%
! ACTTGTAAAAGCTTAAAAGA+AGG - chr2_2:50618199-50618218 Msa0256070:intron 25.0%
! TACTCAAAACAAAAAGAAAG+TGG + chr2_2:50618256-50618275 None:intergenic 25.0%
! TGTGATCAAATAAGCATATA+TGG + chr2_2:50618439-50618458 None:intergenic 25.0%
! GAACAGATTTCAATGTATAA+TGG - chr2_2:50618510-50618529 Msa0256070:CDS 25.0%
TGATAGGTTCCATATGATAT+GGG + chr2_2:50612033-50612052 None:intergenic 30.0%
ATATTCATCATCACCATGTT+GGG + chr2_2:50612423-50612442 None:intergenic 30.0%
TATATTCATCATCACCATGT+TGG + chr2_2:50612424-50612443 None:intergenic 30.0%
CTACAATTTATGAAACCCTT+TGG + chr2_2:50612460-50612479 None:intergenic 30.0%
GGTCATGAACATATCATAAA+CGG - chr2_2:50612790-50612809 Msa0256070:intron 30.0%
AACTTAAGTTTCTACTTGGA+TGG + chr2_2:50612960-50612979 None:intergenic 30.0%
TGTGTTATATTACAGTCAGT+GGG + chr2_2:50612993-50613012 None:intergenic 30.0%
TTGTGTTATATTACAGTCAG+TGG + chr2_2:50612994-50613013 None:intergenic 30.0%
GAATGAATGTAATCACAAGT+CGG + chr2_2:50613084-50613103 None:intergenic 30.0%
AGTAGACACCATAATACTTT+AGG + chr2_2:50613112-50613131 None:intergenic 30.0%
AAAGAAATCATGATTGTGAG+CGG - chr2_2:50613286-50613305 Msa0256070:intron 30.0%
! TTGAAAGTATGTCTGATAGT+TGG - chr2_2:50613421-50613440 Msa0256070:intron 30.0%
ACAACGAAACTAATACCTTA+AGG - chr2_2:50613710-50613729 Msa0256070:intron 30.0%
TGTAATGAAGAACTTACCAA+GGG + chr2_2:50613776-50613795 None:intergenic 30.0%
ATGTAATGAAGAACTTACCA+AGG + chr2_2:50613777-50613796 None:intergenic 30.0%
ATAATAACTCTTGACGATAC+AGG + chr2_2:50613811-50613830 None:intergenic 30.0%
GTATCGTCAAGAGTTATTAT+TGG - chr2_2:50613811-50613830 Msa0256070:intron 30.0%
TCAGTAGTAATGTTTATGAC+TGG - chr2_2:50613865-50613884 Msa0256070:intron 30.0%
ATCAAAATTGCTCAGTAGTT+GGG + chr2_2:50613926-50613945 None:intergenic 30.0%
CATGTAGAAAAAAAAGTTCC+AGG + chr2_2:50614301-50614320 None:intergenic 30.0%
!!! CTGGAACTTTTTTTTCTACA+TGG - chr2_2:50614299-50614318 Msa0256070:intron 30.0%
TCAACATTTGATGTATGGTT+CGG - chr2_2:50614345-50614364 Msa0256070:intron 30.0%
!! GCAAGTATTGGAAAAATTAG+CGG - chr2_2:50614526-50614545 Msa0256070:intron 30.0%
ACTTTACTGTATCAAGGTAA+TGG + chr2_2:50614612-50614631 None:intergenic 30.0%
! AAGTGATCCAGATGTTATTT+CGG - chr2_2:50614722-50614741 Msa0256070:intron 30.0%
GCATCAACAATTTCTGTATT+GGG + chr2_2:50614782-50614801 None:intergenic 30.0%
AGCATCAACAATTTCTGTAT+TGG + chr2_2:50614783-50614802 None:intergenic 30.0%
!! ATATACTATGAAAGGCATCT+AGG + chr2_2:50614806-50614825 None:intergenic 30.0%
! ATTACTCTTTTCAGCATTAC+AGG - chr2_2:50614835-50614854 Msa0256070:intron 30.0%
! TTACTCTTTTCAGCATTACA+GGG - chr2_2:50614836-50614855 Msa0256070:intron 30.0%
! GGATCTTTTACTATATACAC+AGG + chr2_2:50615157-50615176 None:intergenic 30.0%
CAAAGTTAAATCATTGTGAC+TGG - chr2_2:50615284-50615303 Msa0256070:intron 30.0%
AGATATAGAGATTAATGAGC+TGG - chr2_2:50615594-50615613 Msa0256070:intron 30.0%
TATCACACTTTAAGTACCTT+GGG - chr2_2:50616092-50616111 Msa0256070:intron 30.0%
TATAATTGTGTTCCTAAAGG+GGG + chr2_2:50616509-50616528 None:intergenic 30.0%
! ACATGTTCTATCATCTTTTC+TGG + chr2_2:50616556-50616575 None:intergenic 30.0%
TCCCAAATCACTTAAGTTAA+AGG + chr2_2:50616719-50616738 None:intergenic 30.0%
! TTAAGTGATTTGGGAAAATG+TGG - chr2_2:50616724-50616743 Msa0256070:intron 30.0%
! TTTTTCTTTTTCTCTGTGTG+CGG - chr2_2:50616950-50616969 Msa0256070:intron 30.0%
CTTAAGATTTGAATTGAGTG+TGG + chr2_2:50617087-50617106 None:intergenic 30.0%
TGCATTCTTCTTATTCATTC+AGG - chr2_2:50617124-50617143 Msa0256070:intron 30.0%
TTTATGTCAACTTCAAACCA+GGG + chr2_2:50617226-50617245 None:intergenic 30.0%
! TTTTATGTCAACTTCAAACC+AGG + chr2_2:50617227-50617246 None:intergenic 30.0%
TTGTGTATATATGATGTCTG+TGG - chr2_2:50617419-50617438 Msa0256070:intron 30.0%
ATTCAGAAAACAAGTTCTCA+AGG + chr2_2:50617490-50617509 None:intergenic 30.0%
CATAAGTCAATATATGGATG+AGG - chr2_2:50617572-50617591 Msa0256070:intron 30.0%
TATAAGCTGAAAACAGCTTA+TGG + chr2_2:50617646-50617665 None:intergenic 30.0%
! TTGTTACCCTTTGGTTATTT+TGG - chr2_2:50617963-50617982 Msa0256070:intron 30.0%
CATATGCCAAAATAACCAAA+GGG + chr2_2:50617972-50617991 None:intergenic 30.0%
TCATATGCCAAAATAACCAA+AGG + chr2_2:50617973-50617992 None:intergenic 30.0%
! TGGTTCCTTTTGTAGTAATT+GGG + chr2_2:50618126-50618145 None:intergenic 30.0%
!! TATTTCATTTTGGTCCAGAT+AGG - chr2_2:50618286-50618305 Msa0256070:intron 30.0%
! TGCAAATTTTCCTTTCTTTG+TGG + chr2_2:50618323-50618342 None:intergenic 30.0%
AAAGAAAGGAAAATTTGCAG+TGG - chr2_2:50618324-50618343 Msa0256070:intron 30.0%
ATCACATTACATTGCTTATG+TGG - chr2_2:50618453-50618472 Msa0256070:intron 30.0%
TGAAATGCAAAAATATCCAC+AGG + chr2_2:50618595-50618614 None:intergenic 30.0%
!! TGTGGATATTTTTGCATTTC+AGG - chr2_2:50618594-50618613 Msa0256070:CDS 30.0%
GTGATAGGTTCCATATGATA+TGG + chr2_2:50612034-50612053 None:intergenic 35.0%
! CTAACAACCTCTCTTTTCAA+AGG - chr2_2:50612162-50612181 Msa0256070:three_prime_UTR 35.0%
ATATTGCTGAATTGGACCAA+AGG - chr2_2:50612441-50612460 Msa0256070:intron 35.0%
TATTGCTGAATTGGACCAAA+GGG - chr2_2:50612442-50612461 Msa0256070:intron 35.0%
TACATGTGAAGCAATAGTGA+AGG - chr2_2:50612530-50612549 Msa0256070:CDS 35.0%
ACATGTGAAGCAATAGTGAA+GGG - chr2_2:50612531-50612550 Msa0256070:CDS 35.0%
TTTCACTTAGCTATCTGAGA+AGG - chr2_2:50612744-50612763 Msa0256070:intron 35.0%
! TAGCTATCTGAGAAGGTATA+TGG - chr2_2:50612751-50612770 Msa0256070:intron 35.0%
TTATATTACAGTCAGTGGGA+TGG + chr2_2:50612989-50613008 None:intergenic 35.0%
! CTTCAGACTGAAAGTGTATT+TGG - chr2_2:50613038-50613057 Msa0256070:intron 35.0%
ACAGACATCAAACAATGACA+CGG + chr2_2:50613162-50613181 None:intergenic 35.0%
TCATTGTTTGATGTCTGTGT+TGG - chr2_2:50613164-50613183 Msa0256070:intron 35.0%
ATGTCATGTATTCCCTCATA+TGG + chr2_2:50613191-50613210 None:intergenic 35.0%
TATGAGGGAATACATGACAT+TGG - chr2_2:50613191-50613210 Msa0256070:intron 35.0%
ATGAGGGAATACATGACATT+GGG - chr2_2:50613192-50613211 Msa0256070:intron 35.0%
GCAAACTAAATGGTGAAAAG+AGG - chr2_2:50613378-50613397 Msa0256070:intron 35.0%
GTGAAAAGAGGTAACATGTA+TGG - chr2_2:50613390-50613409 Msa0256070:intron 35.0%
! TTTTCTTACTACTCGTCACT+TGG + chr2_2:50613453-50613472 None:intergenic 35.0%
AGTGACGAGTAGTAAGAAAA+TGG - chr2_2:50613453-50613472 Msa0256070:intron 35.0%
GTTGTCCTTTCCATTCTATA+CGG + chr2_2:50613695-50613714 None:intergenic 35.0%
CATCAAAATTGCTCAGTAGT+TGG + chr2_2:50613927-50613946 None:intergenic 35.0%
TATATCTTCTCCATCAACCA+CGG + chr2_2:50613992-50614011 None:intergenic 35.0%
!! AGAAGTTGATGTATTGCTCA+AGG - chr2_2:50614167-50614186 Msa0256070:intron 35.0%
!! GAAGTTGATGTATTGCTCAA+GGG - chr2_2:50614168-50614187 Msa0256070:intron 35.0%
CATACATCAAATGTTGACAC+TGG + chr2_2:50614342-50614361 None:intergenic 35.0%
CAGTGTCAACATTTGATGTA+TGG - chr2_2:50614340-50614359 Msa0256070:intron 35.0%
ACATCATTTGATCCCTAACT+TGG - chr2_2:50614403-50614422 Msa0256070:intron 35.0%
GAGGGGTTAGAAAATTTGTA+TGG + chr2_2:50614487-50614506 None:intergenic 35.0%
!! TAGATTCTTTTAGCACTGGA+GGG + chr2_2:50614505-50614524 None:intergenic 35.0%
!! ATAGATTCTTTTAGCACTGG+AGG + chr2_2:50614506-50614525 None:intergenic 35.0%
! TGCATAGATTCTTTTAGCAC+TGG + chr2_2:50614509-50614528 None:intergenic 35.0%
! GACATTAAAGCATTAGCTCA+AGG - chr2_2:50614548-50614567 Msa0256070:intron 35.0%
! ATTAAAGCATTAGCTCAAGG+AGG - chr2_2:50614551-50614570 Msa0256070:intron 35.0%
TATATCTAGATGGTTACCTG+TGG + chr2_2:50614581-50614600 None:intergenic 35.0%
ACAGGTAACCATCTAGATAT+AGG - chr2_2:50614580-50614599 Msa0256070:intron 35.0%
GCAAACACTTTACTGTATCA+AGG + chr2_2:50614618-50614637 None:intergenic 35.0%
TATATGCTCTTTAGGCTGAA+CGG - chr2_2:50614664-50614683 Msa0256070:intron 35.0%
! TGTATTGGGCTTGGAAATTT+TGG + chr2_2:50614768-50614787 None:intergenic 35.0%
AACAATTTCTGTATTGGGCT+TGG + chr2_2:50614777-50614796 None:intergenic 35.0%
AGTTGGGGATATTATATTGC+AGG - chr2_2:50614933-50614952 Msa0256070:CDS 35.0%
GTCTTCACAAGGAATATCTA+TGG - chr2_2:50615101-50615120 Msa0256070:intron 35.0%
GGCTGTTTAATCAACAACTA+TGG - chr2_2:50615122-50615141 Msa0256070:intron 35.0%
GATATGCACAACTTTAGACA+GGG + chr2_2:50615178-50615197 None:intergenic 35.0%
AGATATGCACAACTTTAGAC+AGG + chr2_2:50615179-50615198 None:intergenic 35.0%
!!! TGGTTTTGTTGGGTTAAGTT+AGG - chr2_2:50615381-50615400 Msa0256070:intron 35.0%
!!! GGTTTTGTTGGGTTAAGTTA+GGG - chr2_2:50615382-50615401 Msa0256070:intron 35.0%
!! TTAAGTTGAGGCTAAACCAA+TGG + chr2_2:50615439-50615458 None:intergenic 35.0%
TAGCCTCAACTTAAAGTTTC+TGG - chr2_2:50615445-50615464 Msa0256070:intron 35.0%
!! TGTCCAGAAACTTTAAGTTG+AGG + chr2_2:50615451-50615470 None:intergenic 35.0%
ATTTGGAAAGACAGCCAAAA+TGG + chr2_2:50615523-50615542 None:intergenic 35.0%
AGAAGGTAGTCTGTAAAATG+AGG + chr2_2:50615833-50615852 None:intergenic 35.0%
AGGAAATGATTGTGTAATCG+TGG - chr2_2:50615878-50615897 Msa0256070:intron 35.0%
CGTAGTTTGAAGGTGAAAAT+TGG - chr2_2:50616049-50616068 Msa0256070:intron 35.0%
GTATCACACTTTAAGTACCT+TGG - chr2_2:50616091-50616110 Msa0256070:intron 35.0%
!! TACTTTTTATGACAGACCCA+AGG + chr2_2:50616111-50616130 None:intergenic 35.0%
TGGGTCTGTCATAAAAAGTA+CGG - chr2_2:50616111-50616130 Msa0256070:intron 35.0%
ACTATAGGATCTTAGTAGGA+TGG - chr2_2:50616153-50616172 Msa0256070:CDS 35.0%
TCTTAGTAGGATGGATAAAC+TGG - chr2_2:50616162-50616181 Msa0256070:CDS 35.0%
! TGTGTATTTTTCCTTCACCA+AGG - chr2_2:50616430-50616449 Msa0256070:intron 35.0%
! TTTTTCCTTCACCAAGGTTT+TGG - chr2_2:50616436-50616455 Msa0256070:intron 35.0%
GAGTTAAATGACCAAAACCT+TGG + chr2_2:50616450-50616469 None:intergenic 35.0%
AGAACATGTCTTAGATAGTC+TGG - chr2_2:50616567-50616586 Msa0256070:intron 35.0%
TTATGATGTGTCAGTGAAAG+TGG - chr2_2:50616612-50616631 Msa0256070:intron 35.0%
GAATTCATTAGAGAAAGACG+TGG - chr2_2:50616663-50616682 Msa0256070:intron 35.0%
AAGAAAGTAGATCATATGGG+AGG - chr2_2:50616771-50616790 Msa0256070:intron 35.0%
ATATAGCAAACTTCACCTGA+TGG - chr2_2:50616919-50616938 Msa0256070:intron 35.0%
TGAAATCTTAAATCCTGCAC+TGG + chr2_2:50617357-50617376 None:intergenic 35.0%
ATGGATGAGGCTATTTGAAT+TGG - chr2_2:50617585-50617604 Msa0256070:intron 35.0%
CTTATATTCATAAGCTCTCC+AGG - chr2_2:50617660-50617679 Msa0256070:intron 35.0%
TAAGTGCAAGAAAATCAAGG+AGG + chr2_2:50617899-50617918 None:intergenic 35.0%
AGCATAGAATTGTTACCCTT+TGG - chr2_2:50617954-50617973 Msa0256070:intron 35.0%
ACATATTGTGCTCATAGCAA+TGG - chr2_2:50618079-50618098 Msa0256070:intron 35.0%
TGGATCCCAATTACTACAAA+AGG - chr2_2:50618118-50618137 Msa0256070:intron 35.0%
! GTGGTTCCTTTTGTAGTAAT+TGG + chr2_2:50618127-50618146 None:intergenic 35.0%
! TCTTGTATCAGTTAGTGGAT+TGG - chr2_2:50618162-50618181 Msa0256070:intron 35.0%
!! CTTGTATCAGTTAGTGGATT+GGG - chr2_2:50618163-50618182 Msa0256070:intron 35.0%
!! TAGTGGATTGGGAAGATTAA+AGG - chr2_2:50618174-50618193 Msa0256070:intron 35.0%
GAAGTAAACACCACAAAGAA+AGG - chr2_2:50618310-50618329 Msa0256070:intron 35.0%
AGAGGTTGTTAGCATTGTTG+CGG + chr2_2:50612154-50612173 None:intergenic 40.0%
! TAAGGGTCCTTTGAAAAGAG+AGG + chr2_2:50612172-50612191 None:intergenic 40.0%
GTAACCTGAAGAAGTGGAAA+AGG + chr2_2:50612210-50612229 None:intergenic 40.0%
TAGAGAGTAACCTGAAGAAG+TGG + chr2_2:50612216-50612235 None:intergenic 40.0%
TGTATTTCTCCAACCCAACA+TGG - chr2_2:50612407-50612426 Msa0256070:intron 40.0%
CATGTGAAGCAATAGTGAAG+GGG - chr2_2:50612532-50612551 Msa0256070:CDS 40.0%
! AGCAATAGTGAAGGGGATTT+TGG - chr2_2:50612539-50612558 Msa0256070:CDS 40.0%
GAAACTTTACCCACACACTA+AGG - chr2_2:50612612-50612631 Msa0256070:intron 40.0%
TATGGAGATAAGCTGAAAGC+AGG - chr2_2:50612769-50612788 Msa0256070:intron 40.0%
CTTGTGAGACTATTTGACAC+AGG + chr2_2:50612825-50612844 None:intergenic 40.0%
TTCTACTTGGATGGAAACAC+AGG + chr2_2:50612951-50612970 None:intergenic 40.0%
ATCAAACAATGACACGGACA+CGG + chr2_2:50613156-50613175 None:intergenic 40.0%
TGAGGGAATACATGACATTG+GGG - chr2_2:50613193-50613212 Msa0256070:intron 40.0%
GAATACATGACATTGGGGTT+GGG - chr2_2:50613198-50613217 Msa0256070:intron 40.0%
AATACATGACATTGGGGTTG+GGG - chr2_2:50613199-50613218 Msa0256070:intron 40.0%
! CATGTTTTCACGGGCTTATA+TGG - chr2_2:50613225-50613244 Msa0256070:intron 40.0%
ATGATGAGTGGTAACATGTG+TGG - chr2_2:50613348-50613367 Msa0256070:CDS 40.0%
TGGAGATGTGGCAAACTAAA+TGG - chr2_2:50613368-50613387 Msa0256070:CDS 40.0%
CAGACATACTTTCAAGAGAC+TGG + chr2_2:50613416-50613435 None:intergenic 40.0%
AGTATGTCTGATAGTTGGCT+TGG - chr2_2:50613426-50613445 Msa0256070:intron 40.0%
GGTTAAGATGGGTCTTGATT+TGG - chr2_2:50613474-50613493 Msa0256070:intron 40.0%
GAAGAATGCCAAAGTATGCT+TGG - chr2_2:50613498-50613517 Msa0256070:CDS 40.0%
!! GCAGTTGAGCATTGAATACT+CGG - chr2_2:50613536-50613555 Msa0256070:intron 40.0%
!! CAGTTGAGCATTGAATACTC+GGG - chr2_2:50613537-50613556 Msa0256070:intron 40.0%
GTGTTAAAGACTTACACTCG+AGG - chr2_2:50613579-50613598 Msa0256070:intron 40.0%
ACTCGTCTGTTAGTGTTATG+TGG - chr2_2:50613617-50613636 Msa0256070:intron 40.0%
CTCGTCTGTTAGTGTTATGT+GGG - chr2_2:50613618-50613637 Msa0256070:intron 40.0%
TGAACGAAGACCGTATAGAA+TGG - chr2_2:50613682-50613701 Msa0256070:intron 40.0%
GAAGACCGTATAGAATGGAA+AGG - chr2_2:50613687-50613706 Msa0256070:intron 40.0%
!! AGAGTTATTATTGGTGCCAG+TGG - chr2_2:50613820-50613839 Msa0256070:intron 40.0%
AATTGCTCAGTAGTTGGGAA+GGG + chr2_2:50613921-50613940 None:intergenic 40.0%
AAATTGCTCAGTAGTTGGGA+AGG + chr2_2:50613922-50613941 None:intergenic 40.0%
AACGTCGACCAAATGATCAA+AGG + chr2_2:50613956-50613975 None:intergenic 40.0%
ATGTATTGCTCAAGGGAGTT+GGG - chr2_2:50614175-50614194 Msa0256070:intron 40.0%
AGTGAAGCATGTTCTTGAGA+TGG - chr2_2:50614218-50614237 Msa0256070:intron 40.0%
AATGGACGACAACCAAGTTA+GGG + chr2_2:50614418-50614437 None:intergenic 40.0%
AAATGGACGACAACCAAGTT+AGG + chr2_2:50614419-50614438 None:intergenic 40.0%
TAGCCTACAACGAAGTCAAA+TGG + chr2_2:50614436-50614455 None:intergenic 40.0%
!! AGATTCTTTTAGCACTGGAG+GGG + chr2_2:50614504-50614523 None:intergenic 40.0%
CTCAATGCCGAAATAACATC+TGG + chr2_2:50614732-50614751 None:intergenic 40.0%
!! CAGATGTTATTTCGGCATTG+AGG - chr2_2:50614730-50614749 Msa0256070:intron 40.0%
TTCTTGGTACAGGAATTGTC+AGG - chr2_2:50614905-50614924 Msa0256070:CDS 40.0%
TCTTGGTACAGGAATTGTCA+GGG - chr2_2:50614906-50614925 Msa0256070:CDS 40.0%
GAATTGTCAGGGAGAAAGTT+GGG - chr2_2:50614917-50614936 Msa0256070:CDS 40.0%
AATTGTCAGGGAGAAAGTTG+GGG - chr2_2:50614918-50614937 Msa0256070:CDS 40.0%
GGATCAGAAAAGTCTTCACA+AGG - chr2_2:50615090-50615109 Msa0256070:intron 40.0%
ATCAACAACTATGGCTGTCT+TGG - chr2_2:50615131-50615150 Msa0256070:intron 40.0%
AAAACCAGCTTGTAAGGTGA+GGG + chr2_2:50615368-50615387 None:intergenic 40.0%
!!! ACCTTACAAGCTGGTTTTGT+TGG - chr2_2:50615370-50615389 Msa0256070:intron 40.0%
!!! CCTTACAAGCTGGTTTTGTT+GGG - chr2_2:50615371-50615390 Msa0256070:intron 40.0%
CAACTATGTTGACGATCCAT+TGG - chr2_2:50615420-50615439 Msa0256070:intron 40.0%
! TAAAGTTTCTGGACATGACC+TGG - chr2_2:50615456-50615475 Msa0256070:intron 40.0%
ACTTTGTTACCTTGTTACCC+AGG - chr2_2:50615722-50615741 Msa0256070:intron 40.0%
CTTTGTTACCTTGTTACCCA+GGG - chr2_2:50615723-50615742 Msa0256070:intron 40.0%
GCAAGAAATTCTACAAGCTC+TGG + chr2_2:50615777-50615796 None:intergenic 40.0%
AATGTCGTCTCCAAATTTCG+AGG - chr2_2:50615929-50615948 Msa0256070:intron 40.0%
ATGTCGTCTCCAAATTTCGA+GGG - chr2_2:50615930-50615949 Msa0256070:intron 40.0%
! GGGTCTGTCATAAAAAGTAC+GGG - chr2_2:50616112-50616131 Msa0256070:intron 40.0%
TAGTAGGATGGATAAACTGG+AGG - chr2_2:50616165-50616184 Msa0256070:CDS 40.0%
! TTGCAAGTCTTATGGCCATA+CGG + chr2_2:50616249-50616268 None:intergenic 40.0%
ATGCAGCATTGCAAGTCTTA+TGG + chr2_2:50616257-50616276 None:intergenic 40.0%
AAAGAAAACCCTGTGTCATG+AGG - chr2_2:50616311-50616330 Msa0256070:intron 40.0%
TGAGGATGAGACTGTTAAGA+TGG - chr2_2:50616329-50616348 Msa0256070:intron 40.0%
AGACTGTTAAGATGGATGAG+TGG - chr2_2:50616337-50616356 Msa0256070:intron 40.0%
AATGACCAAAACCTTGGTGA+AGG + chr2_2:50616444-50616463 None:intergenic 40.0%
ACATTAGAGCTAAGGGTTGA+AGG + chr2_2:50616472-50616491 None:intergenic 40.0%
GCTCAACACATTAGAGCTAA+GGG + chr2_2:50616479-50616498 None:intergenic 40.0%
AGCTCAACACATTAGAGCTA+AGG + chr2_2:50616480-50616499 None:intergenic 40.0%
TTCATTAGAGAAAGACGTGG+TGG - chr2_2:50616666-50616685 Msa0256070:intron 40.0%
TGCTTATGGTTGTAGTACAC+TGG - chr2_2:50617463-50617482 Msa0256070:intron 40.0%
!!! GCAGGAACAGATTTTGGAAT+AGG + chr2_2:50617513-50617532 None:intergenic 40.0%
! CACTATGCAGGAACAGATTT+TGG + chr2_2:50617519-50617538 None:intergenic 40.0%
CAAGCATCATTTCACTATGC+AGG + chr2_2:50617531-50617550 None:intergenic 40.0%
CTGCATAGTGAAATGATGCT+TGG - chr2_2:50617529-50617548 Msa0256070:intron 40.0%
ATGGCAATGTACGTATCAAC+TGG - chr2_2:50618098-50618117 Msa0256070:intron 40.0%
AAAGGAACCACAATCAAGAG+TGG - chr2_2:50618136-50618155 Msa0256070:intron 40.0%
AAGATCTCCACTCTTGATTG+TGG + chr2_2:50618146-50618165 None:intergenic 40.0%
GGAGATCTTGTATCAGTTAG+TGG - chr2_2:50618157-50618176 Msa0256070:intron 40.0%
TGGTGTTTACTTCTCCTATC+TGG + chr2_2:50618303-50618322 None:intergenic 40.0%
TGGAATACCAAGTTCAAACC+TGG - chr2_2:50618473-50618492 Msa0256070:CDS 40.0%
TTCTCTTCCAGGTTTGAACT+TGG + chr2_2:50618483-50618502 None:intergenic 40.0%
CCATGGCGAATATGAGTGAT+AGG + chr2_2:50612049-50612068 None:intergenic 45.0%
CCTATCACTCATATTCGCCA+TGG - chr2_2:50612046-50612065 Msa0256070:three_prime_UTR 45.0%
GGAGAGAAGATGAGAGGTAA+GGG + chr2_2:50612189-50612208 None:intergenic 45.0%
AGGAGAGAAGATGAGAGGTA+AGG + chr2_2:50612190-50612209 None:intergenic 45.0%
GGAAAAGGAGAGAAGATGAG+AGG + chr2_2:50612195-50612214 None:intergenic 45.0%
! CTCTCCTTTTCCACTTCTTC+AGG - chr2_2:50612203-50612222 Msa0256070:three_prime_UTR 45.0%
TCATCATCACCATGTTGGGT+TGG + chr2_2:50612419-50612438 None:intergenic 45.0%
!! GAAGGGGATTTTGGTACTGA+AGG - chr2_2:50612548-50612567 Msa0256070:CDS 45.0%
CAAACAGAGCCTTAGTGTGT+GGG + chr2_2:50612624-50612643 None:intergenic 45.0%
TTGGATGGAAACACAGGTCA+TGG + chr2_2:50612945-50612964 None:intergenic 45.0%
!! ATTTGGTGTCCGACTTGAGT+TGG - chr2_2:50613055-50613074 Msa0256070:intron 45.0%
! TGTCTGTGTTGGTCCATATG+AGG - chr2_2:50613175-50613194 Msa0256070:intron 45.0%
! GTCTGTGTTGGTCCATATGA+GGG - chr2_2:50613176-50613195 Msa0256070:intron 45.0%
GGAATACATGACATTGGGGT+TGG - chr2_2:50613197-50613216 Msa0256070:intron 45.0%
! GTTGGGGAGACATGTTTTCA+CGG - chr2_2:50613215-50613234 Msa0256070:intron 45.0%
! TTGGGGAGACATGTTTTCAC+GGG - chr2_2:50613216-50613235 Msa0256070:intron 45.0%
GAAATCATGATTGTGAGCGG+TGG - chr2_2:50613289-50613308 Msa0256070:intron 45.0%
TGGTAACATGTGTGGAGATG+TGG - chr2_2:50613356-50613375 Msa0256070:CDS 45.0%
AATGCTCAACTGCCACTCAA+CGG + chr2_2:50613529-50613548 None:intergenic 45.0%
!! GAGCATTGAATACTCGGGAA+AGG - chr2_2:50613542-50613561 Msa0256070:intron 45.0%
! TCGGGAAAGGTTTTTGTACG+AGG - chr2_2:50613555-50613574 Msa0256070:intron 45.0%
ACACTCGAGGATGAGATTGT+TGG - chr2_2:50613592-50613611 Msa0256070:intron 45.0%
TGTTATGTGGGCGTGAATGA+AGG - chr2_2:50613630-50613649 Msa0256070:intron 45.0%
GATTTAGATAGGGTGCAGAG+TGG - chr2_2:50613738-50613757 Msa0256070:intron 45.0%
! GTGGATTAATGTGGTACCCT+TGG - chr2_2:50613757-50613776 Msa0256070:intron 45.0%
TGCTGCACATACATAACCAC+TGG + chr2_2:50613839-50613858 None:intergenic 45.0%
ATTGCTCAGTAGTTGGGAAG+GGG + chr2_2:50613920-50613939 None:intergenic 45.0%
!!! CGTTTTTTGAAGAAGCACCG+TGG - chr2_2:50613972-50613991 Msa0256070:intron 45.0%
GATGTATTGCTCAAGGGAGT+TGG - chr2_2:50614174-50614193 Msa0256070:intron 45.0%
TGTATTGCTCAAGGGAGTTG+GGG - chr2_2:50614176-50614195 Msa0256070:intron 45.0%
ATTCTAGACTGTCACAAGCC+TGG - chr2_2:50614280-50614299 Msa0256070:intron 45.0%
! CGTCCATTTGACTTCGTTGT+AGG - chr2_2:50614430-50614449 Msa0256070:intron 45.0%
!! GGAGAGCACCTATATCTAGA+TGG + chr2_2:50614591-50614610 None:intergenic 45.0%
CTGGATGTCCAACAGAAATC+CGG + chr2_2:50614692-50614711 None:intergenic 45.0%
GGATCACTTGTCAGTTCATC+TGG + chr2_2:50614711-50614730 None:intergenic 45.0%
CATGAGAGCAAGGTTCAAAC+TGG + chr2_2:50614867-50614886 None:intergenic 45.0%
CAGTTTGAACCTTGCTCTCA+TGG - chr2_2:50614865-50614884 Msa0256070:intron 45.0%
GACTTCCTTGGCTCAATTCT+TGG - chr2_2:50614889-50614908 Msa0256070:CDS 45.0%
CTGTACCAAGAATTGAGCCA+AGG + chr2_2:50614897-50614916 None:intergenic 45.0%
CTTGGCTCAATTCTTGGTAC+AGG - chr2_2:50614895-50614914 Msa0256070:CDS 45.0%
GGAATTGTCAGGGAGAAAGT+TGG - chr2_2:50614916-50614935 Msa0256070:CDS 45.0%
! TGTGCACAGAGCACAGTTTT+AGG + chr2_2:50614991-50615010 None:intergenic 45.0%
ACTGTGCTCTGTGCACAAAA+TGG - chr2_2:50614994-50615013 Msa0256070:intron 45.0%
AAACCAGCTTGTAAGGTGAG+GGG + chr2_2:50615367-50615386 None:intergenic 45.0%
CAAAACCAGCTTGTAAGGTG+AGG + chr2_2:50615369-50615388 None:intergenic 45.0%
CCCAACAAAACCAGCTTGTA+AGG + chr2_2:50615374-50615393 None:intergenic 45.0%
AGAATTTCTTGCGTCAGCAC+TGG - chr2_2:50615785-50615804 Msa0256070:CDS 45.0%
ATTCCTGCACCCTCGAAATT+TGG + chr2_2:50615942-50615961 None:intergenic 45.0%
AGTCTCATCCTCATGACACA+GGG + chr2_2:50616322-50616341 None:intergenic 45.0%
ATTGTGTTCCTAAAGGGGGT+TGG + chr2_2:50616505-50616524 None:intergenic 45.0%
! GAGTGTGGCTTGTAAAGTGA+GGG + chr2_2:50617072-50617091 None:intergenic 45.0%
! TGAGTGTGGCTTGTAAAGTG+AGG + chr2_2:50617073-50617092 None:intergenic 45.0%
! GGTATCTTGGTGCAAGTTAC+AGG + chr2_2:50617161-50617180 None:intergenic 45.0%
CTCTTGATTATGAACCGCCA+AGG - chr2_2:50617189-50617208 Msa0256070:intron 45.0%
CGAAGCTAGTTGACATGATC+AGG - chr2_2:50617381-50617400 Msa0256070:intron 45.0%
CAAGAAAATCAAGGAGGAGC+AGG + chr2_2:50617893-50617912 None:intergenic 45.0%
GAAGGCCAAGTTCATCTGAA+CGG - chr2_2:50618217-50618236 Msa0256070:intron 45.0%
CAAAGCCGTTCAGATGAACT+TGG + chr2_2:50618225-50618244 None:intergenic 45.0%
CAAGTTCATCTGAACGGCTT+TGG - chr2_2:50618223-50618242 Msa0256070:intron 45.0%
GTTCTTTGCTCTTCTCTTCC+AGG + chr2_2:50618494-50618513 None:intergenic 45.0%
TACACTCAAGTACAGTCCTG+TGG - chr2_2:50618576-50618595 Msa0256070:CDS 45.0%
!!! TTTTTTATAAAATAAATTGT+GGG - chr2_2:50612322-50612341 Msa0256070:exon 5.0%
!! TAAACAAAAAAATATATATT+TGG + chr2_2:50615540-50615559 None:intergenic 5.0%
!! ACAATTAAAAAAAAAAAAAT+TGG + chr2_2:50617280-50617299 None:intergenic 5.0%
! GCTGCAACTACCACTAGCTT+TGG - chr2_2:50612068-50612087 Msa0256070:three_prime_UTR 50.0%
CCAAGCAGTTCCAAAGCTAG+TGG + chr2_2:50612081-50612100 None:intergenic 50.0%
!! CCACTAGCTTTGGAACTGCT+TGG - chr2_2:50612078-50612097 Msa0256070:three_prime_UTR 50.0%
CCAAACAGAGCCTTAGTGTG+TGG + chr2_2:50612625-50612644 None:intergenic 50.0%
CCACACACTAAGGCTCTGTT+TGG - chr2_2:50612622-50612641 Msa0256070:intron 50.0%
AGTCGGACACCAACTCAAGT+CGG + chr2_2:50613067-50613086 None:intergenic 50.0%
ATGATTGTGAGCGGTGGTAC+TGG - chr2_2:50613295-50613314 Msa0256070:CDS 50.0%
CGGGAACACCAAGCATACTT+TGG + chr2_2:50613509-50613528 None:intergenic 50.0%
ATGCTCAACTGCCACTCAAC+GGG + chr2_2:50613528-50613547 None:intergenic 50.0%
!! GGGTGCAGAGTGGATTAATG+TGG - chr2_2:50613748-50613767 Msa0256070:intron 50.0%
CTCTTGACGATACAGGAGCA+AGG + chr2_2:50613804-50613823 None:intergenic 50.0%
!! TGAAGAAGCACCGTGGTTGA+TGG - chr2_2:50613979-50613998 Msa0256070:intron 50.0%
GCTTTCTGACGTGCAGATTC+AGG - chr2_2:50614114-50614133 Msa0256070:intron 50.0%
AGCTCAAGGAGGTTATCCAC+AGG - chr2_2:50614562-50614581 Msa0256070:intron 50.0%
AGGAAGTCACCATGAGAGCA+AGG + chr2_2:50614877-50614896 None:intergenic 50.0%
TGCTCTCATGGTGACTTCCT+TGG - chr2_2:50614877-50614896 Msa0256070:intron 50.0%
CTTGTTACCCAGGGAGAACA+GGG - chr2_2:50615732-50615751 Msa0256070:intron 50.0%
! TCTTGCGTCAGCACTGGATA+AGG - chr2_2:50615791-50615810 Msa0256070:CDS 50.0%
! TCTCCAAATTTCGAGGGTGC+AGG - chr2_2:50615936-50615955 Msa0256070:intron 50.0%
TGCTGCATGCAGCTGAATGT+TGG - chr2_2:50616269-50616288 Msa0256070:intron 50.0%
GCTGCATGCAGCTGAATGTT+GGG - chr2_2:50616270-50616289 Msa0256070:intron 50.0%
CAGTCTCATCCTCATGACAC+AGG + chr2_2:50616323-50616342 None:intergenic 50.0%
AGTCTGGACATGTGTCAGAG+AGG - chr2_2:50616583-50616602 Msa0256070:intron 50.0%
GAACCGCCAAGGTAACATCT+TGG - chr2_2:50617200-50617219 Msa0256070:intron 50.0%
! GCTGGTTTCGTAAGCTATCC+TGG + chr2_2:50617681-50617700 None:intergenic 50.0%
GCTAGTGGTAGTTGCAGCCA+TGG + chr2_2:50612066-50612085 None:intergenic 55.0%
GGTACAAGCAACCGAGCAAG+TGG - chr2_2:50613316-50613335 Msa0256070:CDS 55.0%
!! TGCTTGGTGTTCCCGTTGAG+TGG - chr2_2:50613514-50613533 Msa0256070:CDS 55.0%
CTCTTTAGGCTGAACGGTGC+CGG - chr2_2:50614670-50614689 Msa0256070:intron 55.0%
! GAACGGTGCCGGATTTCTGT+TGG - chr2_2:50614681-50614700 Msa0256070:intron 55.0%
ACACCCCTCACCTTACAAGC+TGG - chr2_2:50615361-50615380 Msa0256070:intron 55.0%
CCTGTTCTCCCTGGGTAACA+AGG + chr2_2:50615734-50615753 None:intergenic 55.0%
CCTTGTTACCCAGGGAGAAC+AGG - chr2_2:50615731-50615750 Msa0256070:intron 55.0%
TGAGCTAGCCAACCCCCTTT+AGG - chr2_2:50616494-50616513 Msa0256070:CDS 55.0%
CTGGACATGTGTCAGAGAGG+AGG - chr2_2:50616586-50616605 Msa0256070:intron 55.0%
GGGCCAAGATGTTACCTTGG+CGG + chr2_2:50617206-50617225 None:intergenic 55.0%
CCAGGGCCAAGATGTTACCT+TGG + chr2_2:50617209-50617228 None:intergenic 55.0%
CCAAGGTAACATCTTGGCCC+TGG - chr2_2:50617206-50617225 Msa0256070:intron 55.0%
GTTGATGCAGTAGCCAGTGC+AGG - chr2_2:50617341-50617360 Msa0256070:intron 55.0%
AAGCAACCGAGCAAGTGGCG+TGG - chr2_2:50613321-50613340 Msa0256070:CDS 60.0%
AGCAACCGAGCAAGTGGCGT+GGG - chr2_2:50613322-50613341 Msa0256070:CDS 60.0%
ATCAGCCCACGCCACTTGCT+CGG + chr2_2:50613330-50613349 None:intergenic 60.0%
! TGGCGTGGGCTGATGATGAG+TGG - chr2_2:50613336-50613355 Msa0256070:CDS 60.0%
CTGAGCACCCTGTTCTCCCT+GGG + chr2_2:50615742-50615761 None:intergenic 60.0%
TCTGAGCACCCTGTTCTCCC+TGG + chr2_2:50615743-50615762 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 50612022 50618675 50612022 ID=Msa0256070;Name=Msa0256070
chr2_2 mRNA 50612022 50618675 50612022 ID=Msa0256070-mRNA-1;Parent=Msa0256070;Name=Msa0256070-mRNA-1;_AED=0.09;_eAED=0.09;_QI=43|1|1|1|1|1|10|309|325
chr2_2 exon 50612022 50612393 50612022 ID=Msa0256070-mRNA-1:exon:15279;Parent=Msa0256070-mRNA-1
chr2_2 exon 50612502 50612601 50612502 ID=Msa0256070-mRNA-1:exon:15278;Parent=Msa0256070-mRNA-1
chr2_2 exon 50613295 50613393 50613295 ID=Msa0256070-mRNA-1:exon:15277;Parent=Msa0256070-mRNA-1
chr2_2 exon 50613487 50613551 50613487 ID=Msa0256070-mRNA-1:exon:15276;Parent=Msa0256070-mRNA-1
chr2_2 exon 50614885 50614953 50614885 ID=Msa0256070-mRNA-1:exon:15275;Parent=Msa0256070-mRNA-1
chr2_2 exon 50615743 50615848 50615743 ID=Msa0256070-mRNA-1:exon:15274;Parent=Msa0256070-mRNA-1
chr2_2 exon 50615946 50616019 50615946 ID=Msa0256070-mRNA-1:exon:15273;Parent=Msa0256070-mRNA-1
chr2_2 exon 50616114 50616245 50616114 ID=Msa0256070-mRNA-1:exon:15272;Parent=Msa0256070-mRNA-1
chr2_2 exon 50616458 50616567 50616458 ID=Msa0256070-mRNA-1:exon:15271;Parent=Msa0256070-mRNA-1
chr2_2 exon 50618473 50618675 50618473 ID=Msa0256070-mRNA-1:exon:15270;Parent=Msa0256070-mRNA-1
chr2_2 five_prime_UTR 50618633 50618675 50618633 ID=Msa0256070-mRNA-1:five_prime_utr;Parent=Msa0256070-mRNA-1
chr2_2 CDS 50618473 50618632 50618473 ID=Msa0256070-mRNA-1:cds;Parent=Msa0256070-mRNA-1
chr2_2 CDS 50616458 50616567 50616458 ID=Msa0256070-mRNA-1:cds;Parent=Msa0256070-mRNA-1
chr2_2 CDS 50616114 50616245 50616114 ID=Msa0256070-mRNA-1:cds;Parent=Msa0256070-mRNA-1
chr2_2 CDS 50615946 50616019 50615946 ID=Msa0256070-mRNA-1:cds;Parent=Msa0256070-mRNA-1
chr2_2 CDS 50615743 50615848 50615743 ID=Msa0256070-mRNA-1:cds;Parent=Msa0256070-mRNA-1
chr2_2 CDS 50614885 50614953 50614885 ID=Msa0256070-mRNA-1:cds;Parent=Msa0256070-mRNA-1
chr2_2 CDS 50613487 50613551 50613487 ID=Msa0256070-mRNA-1:cds;Parent=Msa0256070-mRNA-1
chr2_2 CDS 50613295 50613393 50613295 ID=Msa0256070-mRNA-1:cds;Parent=Msa0256070-mRNA-1
chr2_2 CDS 50612502 50612601 50612502 ID=Msa0256070-mRNA-1:cds;Parent=Msa0256070-mRNA-1
chr2_2 CDS 50612331 50612393 50612331 ID=Msa0256070-mRNA-1:cds;Parent=Msa0256070-mRNA-1
chr2_2 three_prime_UTR 50612022 50612330 50612022 ID=Msa0256070-mRNA-1:three_prime_utr;Parent=Msa0256070-mRNA-1
Gene Sequence

>Msa0256070

ATGGCTGCAACTACCACTAGCTTTGGAACTGCTTGGTGTCTTAGAAGAGTAACTCAAGCTTTTGCACTTTCTCATTCTCATAATCTCCGCAACAATGCTAACAACCTCTCTTTTCAAAGGACCCTTACCTCTCATCTTCTCTCCTTTTCCACTTCTTCAGATTCAGGTGCAAGCACGACAGTGCATGCTTCAAAACGAGAAGTTGATGTATTGCTCAAGGGAGTTGGGGAGAAAAGTGTAGAAAATGAAGTGAAGCATGTTCTTGAGATGGCTAGACGAGCATCATTAAAACGAGAGATTCTCCATACAAATTTTCTAACCCCTCCAGTGCTAAAAGAATCTATGCAAGTATTGGAAAAATTAGCGGACATTAAAGCATTAGCTCAAGGAGGTTATCCACAGGCTGAACGGTGCCGGATTTCTGTTGGACATCCAGATGAACTGACAAGTGATCCAGATGTTATTTCGGCATTGAGCATTACAGGGAACTTCCAGTTTGAACCTTGCTCTCATGGTGACTTCCTTGGCTCAATTCTTGGTACAGGAATTGTCAGGGAGAAAGTTGGGGATATTATATTGCAGGGAGAACAGGGTGCTCAGATAATTGTTGTACCAGAGCTTGTAGAATTTCTTGCGTCAGCACTGGATAAGGTTCGTAATGTTCCTGTAACTTGCACCAAGATACCATTAATTTCTCTTGATTATGAACCGCCAAGAACAAAATCATTCAAAACTATAGAAGCGTCACTAAGAGTTGATGCAGTAGCCAGTGCAGGATTTAAGATTTCACGTTCGAAGCTAGTTGACATGATCAGCAATGGCAATGTACGTATCAACTGGATCCCAATTACTACAAAAGGAACCACAATCAAGAGTGGAGATCTTGTATCAGTTAGTGGATTGGGAAGATTAAAGATAGGAGAAGTAAACACCACAAAGAAAGGAAAATTTGCAGTGGAACTCATTCGATATTTGTAG

Protein sequence

>Msa0256070

MAATTTSFGTAWCLRRVTQAFALSHSHNLRNNANNLSFQRTLTSHLLSFSTSSDSGASTTVHASKREVDVLLKGVGEKSVENEVKHVLEMARRASLKREILHTNFLTPPVLKESMQVLEKLADIKALAQGGYPQAERCRISVGHPDELTSDPDVISALSITGNFQFEPCSHGDFLGSILGTGIVREKVGDIILQGEQGAQIIVVPELVEFLASALDKVRNVPVTCTKIPLISLDYEPPRTKSFKTIEASLRVDAVASAGFKISRSKLVDMISNGNVRINWIPITTKGTTIKSGDLVSVSGLGRLKIGEVNTTKKGKFAVELIRYL*