AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1068880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1068880 MtrunA17_Chr7g0250261 95.070 284 14 0 1 284 1 284 0.0 533
Msa1068880 MtrunA17_Chr0c29g0494001 95.070 284 14 0 1 284 1 284 0.0 533
Msa1068880 MtrunA17_Chr2g0304101 41.071 224 122 5 57 279 90 304 1.41e-43 150
Msa1068880 MtrunA17_Chr2g0311181 31.047 277 174 8 6 279 37 299 1.74e-34 127
Msa1068880 MtrunA17_Chr5g0417641 33.829 269 151 8 19 279 43 292 1.08e-30 116
Msa1068880 MtrunA17_Chr6g0448821 26.636 214 110 4 75 283 189 360 1.58e-17 81.6
Msa1068880 MtrunA17_Chr2g0294671 31.553 206 127 7 78 279 287 482 1.04e-16 79.7
Msa1068880 MtrunA17_Chr4g0043941 29.032 217 134 5 77 283 116 322 2.36e-16 77.8
Msa1068880 MtrunA17_Chr5g0445491 25.197 254 175 7 42 283 225 475 9.54e-16 77.0
Msa1068880 MtrunA17_Chr3g0094341 26.768 198 133 7 25 219 13 201 1.11e-15 74.3
Msa1068880 MtrunA17_Chr4g0034981 26.699 206 144 5 77 279 384 585 2.59e-15 75.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1068880 AT3G18870.1 54.618 249 109 3 36 284 29 273 1.17e-93 278
Msa1068880 AT2G03050.1 35.102 245 143 5 43 279 32 268 1.32e-42 147
Msa1068880 AT2G03050.2 35.102 245 143 5 43 279 33 269 1.54e-42 147
Msa1068880 AT2G34620.1 38.095 210 126 4 71 279 84 290 2.16e-40 142
Msa1068880 AT2G36000.2 36.041 197 117 6 85 279 118 307 9.06e-29 112
Msa1068880 AT2G36000.1 36.224 196 116 6 86 279 119 307 1.01e-28 112
Msa1068880 AT1G78930.1 31.088 193 127 5 93 283 390 578 7.00e-18 84.0
Msa1068880 AT5G55580.2 26.772 254 171 8 42 283 112 362 1.07e-16 79.7
Msa1068880 AT5G55580.1 26.772 254 171 8 42 283 218 468 1.43e-16 79.7
Msa1068880 AT4G38160.4 27.619 210 147 4 77 283 117 324 2.21e-15 75.5
Msa1068880 AT4G38160.1 27.619 210 147 4 77 283 117 324 2.21e-15 75.5
Msa1068880 AT4G38160.3 27.619 210 147 4 77 283 117 324 2.65e-15 75.5
Msa1068880 AT4G38160.2 27.619 210 147 4 77 283 117 324 2.99e-15 75.5
Msa1068880 AT4G14605.2 28.780 205 134 7 78 279 272 467 6.16e-15 75.1
Msa1068880 AT4G14605.1 28.780 205 134 7 78 279 272 467 6.16e-15 75.1
Msa1068880 AT2G21710.1 26.860 242 132 5 78 279 356 592 6.53e-14 72.0

Find 110 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAAGGTTGCCGGCGATAT+TGG 0.211818 7_2:-64256232 Msa1068880:CDS
GCAAGGTTGCCGGCGATATT+GGG 0.271051 7_2:-64256231 Msa1068880:CDS
TCCTGTTAGTTGGCCTGTTC+AGG 0.273978 7_2:+64256355 None:intergenic
GTGGCCGAAGTTTGTGTATT+TGG 0.292279 7_2:-64256187 Msa1068880:CDS
AAGATAGGGGAGAGGGAGGT+AGG 0.308078 7_2:+64256522 None:intergenic
GGAGGGTTGGTTTGAGGATG+TGG 0.308413 7_2:+64256409 None:intergenic
GATAGGGGAGAGGGAGGTAG+GGG 0.319875 7_2:+64256524 None:intergenic
GAGGGAGGTAGGGGAGATGG+AGG 0.337923 7_2:+64256533 None:intergenic
GGAGAGGGAGGTAGGGGAGA+TGG 0.345188 7_2:+64256530 None:intergenic
GAGGATAAGAAGATGAAGTT+TGG 0.345328 7_2:+64256814 None:intergenic
AGGATGTGGTTGATAGTGTC+TGG 0.364492 7_2:+64256642 None:intergenic
TCTGGGTGAGGGAGGTTGTC+TGG 0.367951 7_2:+64256660 None:intergenic
TTGATGTAACCGTTTCTGTT+AGG 0.373078 7_2:+64256753 None:intergenic
AGATAGGGGAGAGGGAGGTA+GGG 0.377255 7_2:+64256523 None:intergenic
ACCTGAACAGGCCAACTAAC+AGG 0.386362 7_2:-64256356 Msa1068880:CDS
TTTGGTGATGGTGGAAAGAT+TGG 0.395619 7_2:+64256832 None:intergenic
GAATGTTTGTGCAAGGTTGC+CGG 0.395975 7_2:-64256241 Msa1068880:CDS
AGATGGAGGTTGTGAAGAGT+TGG 0.409254 7_2:+64256547 None:intergenic
ACGTCGGTGAAGAGAAGGTT+AGG 0.409537 7_2:+64256435 None:intergenic
ATTTGAAAGAAAGAGGTGTT+AGG 0.409873 7_2:-64256071 Msa1068880:CDS
GATGGAGGTTGTGAAGAGTT+GGG 0.411805 7_2:+64256548 None:intergenic
GAAAGAGATGGAGAGGGAGG+TGG 0.414641 7_2:-64256163 Msa1068880:CDS
GGAAGTGGAGGGTTGGTTTG+AGG 0.419169 7_2:+64256403 None:intergenic
AGGTTTCTTGAGGAAGTGGT+TGG 0.427900 7_2:-64256285 Msa1068880:CDS
GGTGAAGATAGGGGAGAGGG+AGG 0.432679 7_2:+64256518 None:intergenic
TCTTTCAAATGCAAATGCCT+TGG 0.434972 7_2:+64256084 None:intergenic
CAACTTCCTCGCGGAGGAAG+TGG 0.444919 7_2:+64256388 None:intergenic
GGTTAGGGCAGCGGAGGATG+AGG 0.446125 7_2:+64256451 None:intergenic
GGCAGCGGAGGATGAGGCCG+CGG 0.447468 7_2:+64256457 None:intergenic
CACTTCCTCCGCGAGGAAGT+TGG 0.448220 7_2:-64256387 Msa1068880:CDS
TTGGAGTTAGTAACCTGAAC+AGG 0.454578 7_2:-64256368 Msa1068880:CDS
AACCGTTTCTGTTAGGATAA+CGG 0.454941 7_2:+64256760 None:intergenic
TGGTTGATAGTGTCTGGGTG+AGG 0.461224 7_2:+64256648 None:intergenic
CATTTGCATTTGAAAGAAAG+AGG 0.462822 7_2:-64256078 Msa1068880:CDS
GGTTTCTTGAGGAAGTGGTT+GGG 0.466379 7_2:-64256284 Msa1068880:CDS
GATGCAAGGAAGGTGAAGAT+AGG 0.467170 7_2:+64256507 None:intergenic
TTGTGAAGAGTTGGGGAGAA+TGG 0.470145 7_2:+64256556 None:intergenic
GGAAGGTGAAGATAGGGGAG+AGG 0.475754 7_2:+64256514 None:intergenic
GTTGAGGTTTCTTGAGGAAG+TGG 0.478350 7_2:-64256289 Msa1068880:CDS
GAGGATGTCGGCCTCGGTGA+AGG 0.479855 7_2:+64256590 None:intergenic
CGGTGAAGGAGTGGGATTTG+AGG 0.484295 7_2:+64256604 None:intergenic
TAGCCGGAGGATGTCGGCCT+CGG 0.488651 7_2:+64256584 None:intergenic
GAAGGTGAAGATAGGGGAGA+GGG 0.493765 7_2:+64256515 None:intergenic
AGAAGATGCGCATGAGGTTG+AGG 0.495323 7_2:-64256305 Msa1068880:CDS
GCAGCGGAGGATGAGGCCGC+GGG 0.497559 7_2:+64256458 None:intergenic
ATGCAAGGAAGGTGAAGATA+GGG 0.506856 7_2:+64256508 None:intergenic
GGTTGATAGTGTCTGGGTGA+GGG 0.507422 7_2:+64256649 None:intergenic
TTGGGTTTAGTTTGGAGAAG+AGG 0.509649 7_2:-64256113 Msa1068880:CDS
AACCGTTATCCTAACAGAAA+CGG 0.513485 7_2:-64256762 Msa1068880:CDS
TCACCGAGGCCGACATCCTC+CGG 0.513674 7_2:-64256587 Msa1068880:CDS
ATAGAGTTTGATAATTGAGA+GGG 0.516525 7_2:+64256792 None:intergenic
TGATAGTGTCTGGGTGAGGG+AGG 0.516969 7_2:+64256652 None:intergenic
GAGTTTGATAATTGAGAGGG+AGG 0.519918 7_2:+64256795 None:intergenic
TTCACCAAATACACAAACTT+CGG 0.521850 7_2:+64256183 None:intergenic
TGAAGAGAAGGTTAGGGCAG+CGG 0.524847 7_2:+64256442 None:intergenic
ATGGAGGTTGTGAAGAGTTG+GGG 0.525374 7_2:+64256549 None:intergenic
TATAGAGTTTGATAATTGAG+AGG 0.527115 7_2:+64256791 None:intergenic
AGATGCGCGTTCCTGTTAGT+TGG 0.527130 7_2:+64256345 None:intergenic
ATTTGGTGAAAGAGATGGAG+AGG 0.546039 7_2:-64256170 Msa1068880:CDS
GGGAGTCTTCCGCAGTGGCA+AGG 0.546410 7_2:+64256478 None:intergenic
CACATCAACATTCTATTCAA+AGG 0.546735 7_2:+64256045 None:intergenic
TTTCTGTTAGGATAACGGTT+AGG 0.548102 7_2:+64256765 None:intergenic
TCGCGGAGGAAGTGGAGGGT+TGG 0.548697 7_2:+64256396 None:intergenic
AAGATGAAGTTTGGTGATGG+TGG 0.550113 7_2:+64256823 None:intergenic
GGTGAAAGAGATGGAGAGGG+AGG 0.550774 7_2:-64256166 Msa1068880:CDS
CTTCCTCGCGGAGGAAGTGG+AGG 0.556212 7_2:+64256391 None:intergenic
AAGGAGGTCGGATGCAAGGA+AGG 0.556549 7_2:+64256497 None:intergenic
CATGAGGTTGAGGTTTCTTG+AGG 0.557913 7_2:-64256295 Msa1068880:CDS
CAAGGTTGCCGGCGATATTG+GGG 0.558881 7_2:-64256230 Msa1068880:CDS
GGGGAGAATGGTGTACTAGC+CGG 0.560017 7_2:+64256568 None:intergenic
GGATGTGGTTGATAGTGTCT+GGG 0.562725 7_2:+64256643 None:intergenic
TGTCGGCCTCGGTGAAGGAG+TGG 0.563109 7_2:+64256595 None:intergenic
ATGTGATGATGGTGAGGATG+TGG 0.567993 7_2:+64256628 None:intergenic
TGTGTATTTGGTGAAAGAGA+TGG 0.569565 7_2:-64256175 Msa1068880:CDS
TGGAGAAGAGGATTGTTCCA+AGG 0.570343 7_2:-64256101 Msa1068880:CDS
TTCCGCAGTGGCAAGGAGGT+CGG 0.574662 7_2:+64256485 None:intergenic
TGGCAAGGAGGTCGGATGCA+AGG 0.574691 7_2:+64256493 None:intergenic
CTTTGAATAGAATGTTGATG+TGG 0.576656 7_2:-64256044 Msa1068880:CDS
TTTGAATAGAATGTTGATGT+GGG 0.578021 7_2:-64256043 Msa1068880:CDS
GTCGGCCTCGGTGAAGGAGT+GGG 0.578702 7_2:+64256596 None:intergenic
AGAGAAGGTTAGGGCAGCGG+AGG 0.578891 7_2:+64256445 None:intergenic
GGTTTACGTCGGTGAAGAGA+AGG 0.579691 7_2:+64256430 None:intergenic
GTGTACTAGCCGGAGGATGT+CGG 0.580551 7_2:+64256578 None:intergenic
TTTGGTGAAAGAGATGGAGA+GGG 0.581785 7_2:-64256169 Msa1068880:CDS
CGTCGGTGAAGAGAAGGTTA+GGG 0.584612 7_2:+64256436 None:intergenic
TGAGGAATGTGATGATGGTG+AGG 0.588656 7_2:+64256622 None:intergenic
AAGCGAGGAATGTTTGTGCA+AGG 0.596914 7_2:-64256248 Msa1068880:CDS
GGATTTGAGGAATGTGATGA+TGG 0.599559 7_2:+64256617 None:intergenic
ATGATAAGTTCTATGCAAAG+TGG 0.608848 7_2:-64256017 Msa1068880:CDS
ACATCGTACCCCAATATCGC+CGG 0.610968 7_2:+64256222 None:intergenic
AAGAAGATGAAGTTTGGTGA+TGG 0.614067 7_2:+64256820 None:intergenic
GGTTTACATACGAGGAAGCG+AGG 0.622401 7_2:-64256263 Msa1068880:CDS
GGCGATATTGGGGTACGATG+TGG 0.628281 7_2:-64256220 Msa1068880:CDS
ATCCGACCTCCTTGCCACTG+CGG 0.641678 7_2:-64256487 Msa1068880:CDS
TGCAAGGAAGGTGAAGATAG+GGG 0.643856 7_2:+64256509 None:intergenic
GCCGCGGGAGTCTTCCGCAG+TGG 0.645697 7_2:+64256473 None:intergenic
TTTGAGGATGTGGTTTACGT+CGG 0.649863 7_2:+64256419 None:intergenic
TTCCTCGCGGAGGAAGTGGA+GGG 0.650738 7_2:+64256392 None:intergenic
GAGAATGGTGTACTAGCCGG+AGG 0.663165 7_2:+64256571 None:intergenic
GCATCTTCTCAACACGCGTG+TGG 0.668292 7_2:-64256328 Msa1068880:CDS
AGTGGTTGGGTTTACATACG+AGG 0.682684 7_2:-64256271 Msa1068880:CDS
GTGTGGAGAAGATGCGCATG+AGG 0.685391 7_2:-64256311 Msa1068880:CDS
AGTCTTCCGCAGTGGCAAGG+AGG 0.689369 7_2:+64256481 None:intergenic
AACCCTCCACTTCCTCCGCG+AGG 0.690297 7_2:-64256394 Msa1068880:CDS
GCCACTGCGGAAGACTCCCG+CGG 0.701337 7_2:-64256474 Msa1068880:CDS
ACGATGTGGAGAATAACTTG+TGG 0.706381 7_2:-64256206 Msa1068880:CDS
TACTAACTCCAACTTCCTCG+CGG 0.708475 7_2:+64256379 None:intergenic
TTGAATAGAATGTTGATGTG+GGG 0.710612 7_2:-64256042 Msa1068880:CDS
TAACTCCAACTTCCTCGCGG+AGG 0.712692 7_2:+64256382 None:intergenic
CAAATCCCACTCCTTCACCG+AGG 0.757983 7_2:-64256601 Msa1068880:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAGAGTTTGATAATTGAGA+GGG + chr7_2:64256065-64256084 None:intergenic 25.0%
!! TATAGAGTTTGATAATTGAG+AGG + chr7_2:64256066-64256085 None:intergenic 25.0%
!! TTATTATGGTTAGTGCTTTT+AGG + chr7_2:64256160-64256179 None:intergenic 25.0%
! TTTGAATAGAATGTTGATGT+GGG - chr7_2:64256811-64256830 Msa1068880:CDS 25.0%
!! ATAGAGTTTGATAATTGAGA+GGG + chr7_2:64256065-64256084 None:intergenic 25.0%
!! TATAGAGTTTGATAATTGAG+AGG + chr7_2:64256066-64256085 None:intergenic 25.0%
!! TTATTATGGTTAGTGCTTTT+AGG + chr7_2:64256160-64256179 None:intergenic 25.0%
! TTTGAATAGAATGTTGATGT+GGG - chr7_2:64256811-64256830 Msa1068880:CDS 25.0%
!! GTAATGGAGATTTTCATTGT+AGG + chr7_2:64256138-64256157 None:intergenic 30.0%
! TTTTGTGTTGGGGTTTATTA+TGG + chr7_2:64256174-64256193 None:intergenic 30.0%
TTCACCAAATACACAAACTT+CGG + chr7_2:64256674-64256693 None:intergenic 30.0%
AAACTAAACCCAAAAAACTG+CGG + chr7_2:64256734-64256753 None:intergenic 30.0%
CATTTGCATTTGAAAGAAAG+AGG - chr7_2:64256776-64256795 Msa1068880:CDS 30.0%
!! ATTTGAAAGAAAGAGGTGTT+AGG - chr7_2:64256783-64256802 Msa1068880:CDS 30.0%
CACATCAACATTCTATTCAA+AGG + chr7_2:64256812-64256831 None:intergenic 30.0%
CTTTGAATAGAATGTTGATG+TGG - chr7_2:64256810-64256829 Msa1068880:CDS 30.0%
TTGAATAGAATGTTGATGTG+GGG - chr7_2:64256812-64256831 Msa1068880:CDS 30.0%
ATGATAAGTTCTATGCAAAG+TGG - chr7_2:64256837-64256856 Msa1068880:CDS 30.0%
!! GTAATGGAGATTTTCATTGT+AGG + chr7_2:64256138-64256157 None:intergenic 30.0%
! TTTTGTGTTGGGGTTTATTA+TGG + chr7_2:64256174-64256193 None:intergenic 30.0%
TTCACCAAATACACAAACTT+CGG + chr7_2:64256674-64256693 None:intergenic 30.0%
AAACTAAACCCAAAAAACTG+CGG + chr7_2:64256734-64256753 None:intergenic 30.0%
CATTTGCATTTGAAAGAAAG+AGG - chr7_2:64256776-64256795 Msa1068880:CDS 30.0%
!! ATTTGAAAGAAAGAGGTGTT+AGG - chr7_2:64256783-64256802 Msa1068880:CDS 30.0%
CACATCAACATTCTATTCAA+AGG + chr7_2:64256812-64256831 None:intergenic 30.0%
CTTTGAATAGAATGTTGATG+TGG - chr7_2:64256810-64256829 Msa1068880:CDS 30.0%
TTGAATAGAATGTTGATGTG+GGG - chr7_2:64256812-64256831 Msa1068880:CDS 30.0%
ATGATAAGTTCTATGCAAAG+TGG - chr7_2:64256837-64256856 Msa1068880:CDS 30.0%
! AAGAAGATGAAGTTTGGTGA+TGG + chr7_2:64256037-64256056 None:intergenic 35.0%
GAGGATAAGAAGATGAAGTT+TGG + chr7_2:64256043-64256062 None:intergenic 35.0%
! TTTCTGTTAGGATAACGGTT+AGG + chr7_2:64256092-64256111 None:intergenic 35.0%
AACCGTTATCCTAACAGAAA+CGG - chr7_2:64256092-64256111 Msa1068880:CDS 35.0%
AACCGTTTCTGTTAGGATAA+CGG + chr7_2:64256097-64256116 None:intergenic 35.0%
TTGATGTAACCGTTTCTGTT+AGG + chr7_2:64256104-64256123 None:intergenic 35.0%
!! TGGTTAGTGCTTTTAGGTAA+TGG + chr7_2:64256154-64256173 None:intergenic 35.0%
! TGTGTATTTGGTGAAAGAGA+TGG - chr7_2:64256679-64256698 Msa1068880:CDS 35.0%
!!! AAGAAGTTTCCGCAGTTTTT+TGG - chr7_2:64256722-64256741 Msa1068880:CDS 35.0%
!!! AGAAGTTTCCGCAGTTTTTT+GGG - chr7_2:64256723-64256742 Msa1068880:CDS 35.0%
!!! GCAGTTTTTTGGGTTTAGTT+TGG - chr7_2:64256733-64256752 Msa1068880:CDS 35.0%
TCTTTCAAATGCAAATGCCT+TGG + chr7_2:64256773-64256792 None:intergenic 35.0%
! AAGAAGATGAAGTTTGGTGA+TGG + chr7_2:64256037-64256056 None:intergenic 35.0%
GAGGATAAGAAGATGAAGTT+TGG + chr7_2:64256043-64256062 None:intergenic 35.0%
! TTTCTGTTAGGATAACGGTT+AGG + chr7_2:64256092-64256111 None:intergenic 35.0%
AACCGTTATCCTAACAGAAA+CGG - chr7_2:64256092-64256111 Msa1068880:CDS 35.0%
AACCGTTTCTGTTAGGATAA+CGG + chr7_2:64256097-64256116 None:intergenic 35.0%
TTGATGTAACCGTTTCTGTT+AGG + chr7_2:64256104-64256123 None:intergenic 35.0%
!! TGGTTAGTGCTTTTAGGTAA+TGG + chr7_2:64256154-64256173 None:intergenic 35.0%
! TGTGTATTTGGTGAAAGAGA+TGG - chr7_2:64256679-64256698 Msa1068880:CDS 35.0%
!!! AAGAAGTTTCCGCAGTTTTT+TGG - chr7_2:64256722-64256741 Msa1068880:CDS 35.0%
!!! AGAAGTTTCCGCAGTTTTTT+GGG - chr7_2:64256723-64256742 Msa1068880:CDS 35.0%
!!! GCAGTTTTTTGGGTTTAGTT+TGG - chr7_2:64256733-64256752 Msa1068880:CDS 35.0%
TCTTTCAAATGCAAATGCCT+TGG + chr7_2:64256773-64256792 None:intergenic 35.0%
!! TTTGGTGATGGTGGAAAGAT+TGG + chr7_2:64256025-64256044 None:intergenic 40.0%
!! AAGATGAAGTTTGGTGATGG+TGG + chr7_2:64256034-64256053 None:intergenic 40.0%
! GAGTTTGATAATTGAGAGGG+AGG + chr7_2:64256062-64256081 None:intergenic 40.0%
!!! AGGTTGTCTGGTTTTGTGTT+GGG + chr7_2:64256185-64256204 None:intergenic 40.0%
GGATTTGAGGAATGTGATGA+TGG + chr7_2:64256240-64256259 None:intergenic 40.0%
ATGCAAGGAAGGTGAAGATA+GGG + chr7_2:64256349-64256368 None:intergenic 40.0%
TTTGAGGATGTGGTTTACGT+CGG + chr7_2:64256438-64256457 None:intergenic 40.0%
TTGGAGTTAGTAACCTGAAC+AGG - chr7_2:64256486-64256505 Msa1068880:CDS 40.0%
ACGATGTGGAGAATAACTTG+TGG - chr7_2:64256648-64256667 Msa1068880:CDS 40.0%
! ATTTGGTGAAAGAGATGGAG+AGG - chr7_2:64256684-64256703 Msa1068880:CDS 40.0%
TTTGGTGAAAGAGATGGAGA+GGG - chr7_2:64256685-64256704 Msa1068880:CDS 40.0%
!! TTGGGTTTAGTTTGGAGAAG+AGG - chr7_2:64256741-64256760 Msa1068880:CDS 40.0%
!! TTTGGTGATGGTGGAAAGAT+TGG + chr7_2:64256025-64256044 None:intergenic 40.0%
!! AAGATGAAGTTTGGTGATGG+TGG + chr7_2:64256034-64256053 None:intergenic 40.0%
! GAGTTTGATAATTGAGAGGG+AGG + chr7_2:64256062-64256081 None:intergenic 40.0%
!!! AGGTTGTCTGGTTTTGTGTT+GGG + chr7_2:64256185-64256204 None:intergenic 40.0%
GGATTTGAGGAATGTGATGA+TGG + chr7_2:64256240-64256259 None:intergenic 40.0%
ATGCAAGGAAGGTGAAGATA+GGG + chr7_2:64256349-64256368 None:intergenic 40.0%
TTTGAGGATGTGGTTTACGT+CGG + chr7_2:64256438-64256457 None:intergenic 40.0%
TTGGAGTTAGTAACCTGAAC+AGG - chr7_2:64256486-64256505 Msa1068880:CDS 40.0%
ACGATGTGGAGAATAACTTG+TGG - chr7_2:64256648-64256667 Msa1068880:CDS 40.0%
! ATTTGGTGAAAGAGATGGAG+AGG - chr7_2:64256684-64256703 Msa1068880:CDS 40.0%
TTTGGTGAAAGAGATGGAGA+GGG - chr7_2:64256685-64256704 Msa1068880:CDS 40.0%
!! TTGGGTTTAGTTTGGAGAAG+AGG - chr7_2:64256741-64256760 Msa1068880:CDS 40.0%
!!! GGTTGTCTGGTTTTGTGTTG+GGG + chr7_2:64256184-64256203 None:intergenic 45.0%
!!! GAGGTTGTCTGGTTTTGTGT+TGG + chr7_2:64256186-64256205 None:intergenic 45.0%
!! GGATGTGGTTGATAGTGTCT+GGG + chr7_2:64256214-64256233 None:intergenic 45.0%
!! AGGATGTGGTTGATAGTGTC+TGG + chr7_2:64256215-64256234 None:intergenic 45.0%
!! ATGTGATGATGGTGAGGATG+TGG + chr7_2:64256229-64256248 None:intergenic 45.0%
!! TGAGGAATGTGATGATGGTG+AGG + chr7_2:64256235-64256254 None:intergenic 45.0%
TTGTGAAGAGTTGGGGAGAA+TGG + chr7_2:64256301-64256320 None:intergenic 45.0%
ATGGAGGTTGTGAAGAGTTG+GGG + chr7_2:64256308-64256327 None:intergenic 45.0%
GATGGAGGTTGTGAAGAGTT+GGG + chr7_2:64256309-64256328 None:intergenic 45.0%
AGATGGAGGTTGTGAAGAGT+TGG + chr7_2:64256310-64256329 None:intergenic 45.0%
TGCAAGGAAGGTGAAGATAG+GGG + chr7_2:64256348-64256367 None:intergenic 45.0%
GATGCAAGGAAGGTGAAGAT+AGG + chr7_2:64256350-64256369 None:intergenic 45.0%
TACTAACTCCAACTTCCTCG+CGG + chr7_2:64256478-64256497 None:intergenic 45.0%
CATGAGGTTGAGGTTTCTTG+AGG - chr7_2:64256559-64256578 Msa1068880:CDS 45.0%
GTTGAGGTTTCTTGAGGAAG+TGG - chr7_2:64256565-64256584 Msa1068880:CDS 45.0%
AGGTTTCTTGAGGAAGTGGT+TGG - chr7_2:64256569-64256588 Msa1068880:CDS 45.0%
GGTTTCTTGAGGAAGTGGTT+GGG - chr7_2:64256570-64256589 Msa1068880:CDS 45.0%
AGTGGTTGGGTTTACATACG+AGG - chr7_2:64256583-64256602 Msa1068880:CDS 45.0%
AAGCGAGGAATGTTTGTGCA+AGG - chr7_2:64256606-64256625 Msa1068880:CDS 45.0%
GAATGTTTGTGCAAGGTTGC+CGG - chr7_2:64256613-64256632 Msa1068880:CDS 45.0%
GTGGCCGAAGTTTGTGTATT+TGG - chr7_2:64256667-64256686 Msa1068880:CDS 45.0%
TGGAGAAGAGGATTGTTCCA+AGG - chr7_2:64256753-64256772 Msa1068880:CDS 45.0%
!!! GGTTGTCTGGTTTTGTGTTG+GGG + chr7_2:64256184-64256203 None:intergenic 45.0%
!!! GAGGTTGTCTGGTTTTGTGT+TGG + chr7_2:64256186-64256205 None:intergenic 45.0%
!! GGATGTGGTTGATAGTGTCT+GGG + chr7_2:64256214-64256233 None:intergenic 45.0%
!! AGGATGTGGTTGATAGTGTC+TGG + chr7_2:64256215-64256234 None:intergenic 45.0%
!! ATGTGATGATGGTGAGGATG+TGG + chr7_2:64256229-64256248 None:intergenic 45.0%
!! TGAGGAATGTGATGATGGTG+AGG + chr7_2:64256235-64256254 None:intergenic 45.0%
TTGTGAAGAGTTGGGGAGAA+TGG + chr7_2:64256301-64256320 None:intergenic 45.0%
ATGGAGGTTGTGAAGAGTTG+GGG + chr7_2:64256308-64256327 None:intergenic 45.0%
GATGGAGGTTGTGAAGAGTT+GGG + chr7_2:64256309-64256328 None:intergenic 45.0%
AGATGGAGGTTGTGAAGAGT+TGG + chr7_2:64256310-64256329 None:intergenic 45.0%
TGCAAGGAAGGTGAAGATAG+GGG + chr7_2:64256348-64256367 None:intergenic 45.0%
GATGCAAGGAAGGTGAAGAT+AGG + chr7_2:64256350-64256369 None:intergenic 45.0%
TACTAACTCCAACTTCCTCG+CGG + chr7_2:64256478-64256497 None:intergenic 45.0%
CATGAGGTTGAGGTTTCTTG+AGG - chr7_2:64256559-64256578 Msa1068880:CDS 45.0%
GTTGAGGTTTCTTGAGGAAG+TGG - chr7_2:64256565-64256584 Msa1068880:CDS 45.0%
AGGTTTCTTGAGGAAGTGGT+TGG - chr7_2:64256569-64256588 Msa1068880:CDS 45.0%
GGTTTCTTGAGGAAGTGGTT+GGG - chr7_2:64256570-64256589 Msa1068880:CDS 45.0%
AGTGGTTGGGTTTACATACG+AGG - chr7_2:64256583-64256602 Msa1068880:CDS 45.0%
AAGCGAGGAATGTTTGTGCA+AGG - chr7_2:64256606-64256625 Msa1068880:CDS 45.0%
GAATGTTTGTGCAAGGTTGC+CGG - chr7_2:64256613-64256632 Msa1068880:CDS 45.0%
GTGGCCGAAGTTTGTGTATT+TGG - chr7_2:64256667-64256686 Msa1068880:CDS 45.0%
TGGAGAAGAGGATTGTTCCA+AGG - chr7_2:64256753-64256772 Msa1068880:CDS 45.0%
!! GGTTGATAGTGTCTGGGTGA+GGG + chr7_2:64256208-64256227 None:intergenic 50.0%
!! TGGTTGATAGTGTCTGGGTG+AGG + chr7_2:64256209-64256228 None:intergenic 50.0%
GAAGGTGAAGATAGGGGAGA+GGG + chr7_2:64256342-64256361 None:intergenic 50.0%
TGAAGAGAAGGTTAGGGCAG+CGG + chr7_2:64256415-64256434 None:intergenic 50.0%
CGTCGGTGAAGAGAAGGTTA+GGG + chr7_2:64256421-64256440 None:intergenic 50.0%
ACGTCGGTGAAGAGAAGGTT+AGG + chr7_2:64256422-64256441 None:intergenic 50.0%
GGTTTACGTCGGTGAAGAGA+AGG + chr7_2:64256427-64256446 None:intergenic 50.0%
ACCTGAACAGGCCAACTAAC+AGG - chr7_2:64256498-64256517 Msa1068880:CDS 50.0%
! TCCTGTTAGTTGGCCTGTTC+AGG + chr7_2:64256502-64256521 None:intergenic 50.0%
AGATGCGCGTTCCTGTTAGT+TGG + chr7_2:64256512-64256531 None:intergenic 50.0%
AGAAGATGCGCATGAGGTTG+AGG - chr7_2:64256549-64256568 Msa1068880:CDS 50.0%
GGTTTACATACGAGGAAGCG+AGG - chr7_2:64256591-64256610 Msa1068880:CDS 50.0%
ACATCGTACCCCAATATCGC+CGG + chr7_2:64256635-64256654 None:intergenic 50.0%
!! GGTTGATAGTGTCTGGGTGA+GGG + chr7_2:64256208-64256227 None:intergenic 50.0%
!! TGGTTGATAGTGTCTGGGTG+AGG + chr7_2:64256209-64256228 None:intergenic 50.0%
GAAGGTGAAGATAGGGGAGA+GGG + chr7_2:64256342-64256361 None:intergenic 50.0%
TGAAGAGAAGGTTAGGGCAG+CGG + chr7_2:64256415-64256434 None:intergenic 50.0%
CGTCGGTGAAGAGAAGGTTA+GGG + chr7_2:64256421-64256440 None:intergenic 50.0%
ACGTCGGTGAAGAGAAGGTT+AGG + chr7_2:64256422-64256441 None:intergenic 50.0%
GGTTTACGTCGGTGAAGAGA+AGG + chr7_2:64256427-64256446 None:intergenic 50.0%
ACCTGAACAGGCCAACTAAC+AGG - chr7_2:64256498-64256517 Msa1068880:CDS 50.0%
! TCCTGTTAGTTGGCCTGTTC+AGG + chr7_2:64256502-64256521 None:intergenic 50.0%
AGATGCGCGTTCCTGTTAGT+TGG + chr7_2:64256512-64256531 None:intergenic 50.0%
AGAAGATGCGCATGAGGTTG+AGG - chr7_2:64256549-64256568 Msa1068880:CDS 50.0%
GGTTTACATACGAGGAAGCG+AGG - chr7_2:64256591-64256610 Msa1068880:CDS 50.0%
ACATCGTACCCCAATATCGC+CGG + chr7_2:64256635-64256654 None:intergenic 50.0%
! TGATAGTGTCTGGGTGAGGG+AGG + chr7_2:64256205-64256224 None:intergenic 55.0%
CGGTGAAGGAGTGGGATTTG+AGG + chr7_2:64256253-64256272 None:intergenic 55.0%
CAAATCCCACTCCTTCACCG+AGG - chr7_2:64256253-64256272 Msa1068880:CDS 55.0%
GTGTACTAGCCGGAGGATGT+CGG + chr7_2:64256279-64256298 None:intergenic 55.0%
GAGAATGGTGTACTAGCCGG+AGG + chr7_2:64256286-64256305 None:intergenic 55.0%
GGGGAGAATGGTGTACTAGC+CGG + chr7_2:64256289-64256308 None:intergenic 55.0%
AGATAGGGGAGAGGGAGGTA+GGG + chr7_2:64256334-64256353 None:intergenic 55.0%
AAGATAGGGGAGAGGGAGGT+AGG + chr7_2:64256335-64256354 None:intergenic 55.0%
GGAAGGTGAAGATAGGGGAG+AGG + chr7_2:64256343-64256362 None:intergenic 55.0%
AAGGAGGTCGGATGCAAGGA+AGG + chr7_2:64256360-64256379 None:intergenic 55.0%
!! GGAGGGTTGGTTTGAGGATG+TGG + chr7_2:64256448-64256467 None:intergenic 55.0%
!! GGAAGTGGAGGGTTGGTTTG+AGG + chr7_2:64256454-64256473 None:intergenic 55.0%
TAACTCCAACTTCCTCGCGG+AGG + chr7_2:64256475-64256494 None:intergenic 55.0%
GCATCTTCTCAACACGCGTG+TGG - chr7_2:64256526-64256545 Msa1068880:CDS 55.0%
GTGTGGAGAAGATGCGCATG+AGG - chr7_2:64256543-64256562 Msa1068880:CDS 55.0%
TGCAAGGTTGCCGGCGATAT+TGG - chr7_2:64256622-64256641 Msa1068880:CDS 55.0%
GCAAGGTTGCCGGCGATATT+GGG - chr7_2:64256623-64256642 Msa1068880:CDS 55.0%
CAAGGTTGCCGGCGATATTG+GGG - chr7_2:64256624-64256643 Msa1068880:CDS 55.0%
GGCGATATTGGGGTACGATG+TGG - chr7_2:64256634-64256653 Msa1068880:CDS 55.0%
GGTGAAAGAGATGGAGAGGG+AGG - chr7_2:64256688-64256707 Msa1068880:CDS 55.0%
GAAAGAGATGGAGAGGGAGG+TGG - chr7_2:64256691-64256710 Msa1068880:CDS 55.0%
! TGATAGTGTCTGGGTGAGGG+AGG + chr7_2:64256205-64256224 None:intergenic 55.0%
CGGTGAAGGAGTGGGATTTG+AGG + chr7_2:64256253-64256272 None:intergenic 55.0%
CAAATCCCACTCCTTCACCG+AGG - chr7_2:64256253-64256272 Msa1068880:CDS 55.0%
GTGTACTAGCCGGAGGATGT+CGG + chr7_2:64256279-64256298 None:intergenic 55.0%
GAGAATGGTGTACTAGCCGG+AGG + chr7_2:64256286-64256305 None:intergenic 55.0%
GGGGAGAATGGTGTACTAGC+CGG + chr7_2:64256289-64256308 None:intergenic 55.0%
AGATAGGGGAGAGGGAGGTA+GGG + chr7_2:64256334-64256353 None:intergenic 55.0%
AAGATAGGGGAGAGGGAGGT+AGG + chr7_2:64256335-64256354 None:intergenic 55.0%
GGAAGGTGAAGATAGGGGAG+AGG + chr7_2:64256343-64256362 None:intergenic 55.0%
AAGGAGGTCGGATGCAAGGA+AGG + chr7_2:64256360-64256379 None:intergenic 55.0%
!! GGAGGGTTGGTTTGAGGATG+TGG + chr7_2:64256448-64256467 None:intergenic 55.0%
!! GGAAGTGGAGGGTTGGTTTG+AGG + chr7_2:64256454-64256473 None:intergenic 55.0%
TAACTCCAACTTCCTCGCGG+AGG + chr7_2:64256475-64256494 None:intergenic 55.0%
GCATCTTCTCAACACGCGTG+TGG - chr7_2:64256526-64256545 Msa1068880:CDS 55.0%
GTGTGGAGAAGATGCGCATG+AGG - chr7_2:64256543-64256562 Msa1068880:CDS 55.0%
TGCAAGGTTGCCGGCGATAT+TGG - chr7_2:64256622-64256641 Msa1068880:CDS 55.0%
GCAAGGTTGCCGGCGATATT+GGG - chr7_2:64256623-64256642 Msa1068880:CDS 55.0%
CAAGGTTGCCGGCGATATTG+GGG - chr7_2:64256624-64256643 Msa1068880:CDS 55.0%
GGCGATATTGGGGTACGATG+TGG - chr7_2:64256634-64256653 Msa1068880:CDS 55.0%
GGTGAAAGAGATGGAGAGGG+AGG - chr7_2:64256688-64256707 Msa1068880:CDS 55.0%
GAAAGAGATGGAGAGGGAGG+TGG - chr7_2:64256691-64256710 Msa1068880:CDS 55.0%
TCTGGGTGAGGGAGGTTGTC+TGG + chr7_2:64256197-64256216 None:intergenic 60.0%
GATAGGGGAGAGGGAGGTAG+GGG + chr7_2:64256333-64256352 None:intergenic 60.0%
GGTGAAGATAGGGGAGAGGG+AGG + chr7_2:64256339-64256358 None:intergenic 60.0%
TGGCAAGGAGGTCGGATGCA+AGG + chr7_2:64256364-64256383 None:intergenic 60.0%
ATCCGACCTCCTTGCCACTG+CGG - chr7_2:64256367-64256386 Msa1068880:CDS 60.0%
TTCCGCAGTGGCAAGGAGGT+CGG + chr7_2:64256372-64256391 None:intergenic 60.0%
AGTCTTCCGCAGTGGCAAGG+AGG + chr7_2:64256376-64256395 None:intergenic 60.0%
AGAGAAGGTTAGGGCAGCGG+AGG + chr7_2:64256412-64256431 None:intergenic 60.0%
TTCCTCGCGGAGGAAGTGGA+GGG + chr7_2:64256465-64256484 None:intergenic 60.0%
CAACTTCCTCGCGGAGGAAG+TGG + chr7_2:64256469-64256488 None:intergenic 60.0%
CACTTCCTCCGCGAGGAAGT+TGG - chr7_2:64256467-64256486 Msa1068880:CDS 60.0%
TCTGGGTGAGGGAGGTTGTC+TGG + chr7_2:64256197-64256216 None:intergenic 60.0%
GATAGGGGAGAGGGAGGTAG+GGG + chr7_2:64256333-64256352 None:intergenic 60.0%
GGTGAAGATAGGGGAGAGGG+AGG + chr7_2:64256339-64256358 None:intergenic 60.0%
TGGCAAGGAGGTCGGATGCA+AGG + chr7_2:64256364-64256383 None:intergenic 60.0%
ATCCGACCTCCTTGCCACTG+CGG - chr7_2:64256367-64256386 Msa1068880:CDS 60.0%
TTCCGCAGTGGCAAGGAGGT+CGG + chr7_2:64256372-64256391 None:intergenic 60.0%
AGTCTTCCGCAGTGGCAAGG+AGG + chr7_2:64256376-64256395 None:intergenic 60.0%
AGAGAAGGTTAGGGCAGCGG+AGG + chr7_2:64256412-64256431 None:intergenic 60.0%
TTCCTCGCGGAGGAAGTGGA+GGG + chr7_2:64256465-64256484 None:intergenic 60.0%
CAACTTCCTCGCGGAGGAAG+TGG + chr7_2:64256469-64256488 None:intergenic 60.0%
CACTTCCTCCGCGAGGAAGT+TGG - chr7_2:64256467-64256486 Msa1068880:CDS 60.0%
GTCGGCCTCGGTGAAGGAGT+GGG + chr7_2:64256261-64256280 None:intergenic 65.0%
TGTCGGCCTCGGTGAAGGAG+TGG + chr7_2:64256262-64256281 None:intergenic 65.0%
GAGGATGTCGGCCTCGGTGA+AGG + chr7_2:64256267-64256286 None:intergenic 65.0%
TCACCGAGGCCGACATCCTC+CGG - chr7_2:64256267-64256286 Msa1068880:CDS 65.0%
TAGCCGGAGGATGTCGGCCT+CGG + chr7_2:64256273-64256292 None:intergenic 65.0%
GAGGGAGGTAGGGGAGATGG+AGG + chr7_2:64256324-64256343 None:intergenic 65.0%
GGAGAGGGAGGTAGGGGAGA+TGG + chr7_2:64256327-64256346 None:intergenic 65.0%
GGGAGTCTTCCGCAGTGGCA+AGG + chr7_2:64256379-64256398 None:intergenic 65.0%
GGTTAGGGCAGCGGAGGATG+AGG + chr7_2:64256406-64256425 None:intergenic 65.0%
TCGCGGAGGAAGTGGAGGGT+TGG + chr7_2:64256461-64256480 None:intergenic 65.0%
AACCCTCCACTTCCTCCGCG+AGG - chr7_2:64256460-64256479 Msa1068880:CDS 65.0%
CTTCCTCGCGGAGGAAGTGG+AGG + chr7_2:64256466-64256485 None:intergenic 65.0%
GTCGGCCTCGGTGAAGGAGT+GGG + chr7_2:64256261-64256280 None:intergenic 65.0%
TGTCGGCCTCGGTGAAGGAG+TGG + chr7_2:64256262-64256281 None:intergenic 65.0%
GAGGATGTCGGCCTCGGTGA+AGG + chr7_2:64256267-64256286 None:intergenic 65.0%
TCACCGAGGCCGACATCCTC+CGG - chr7_2:64256267-64256286 Msa1068880:CDS 65.0%
TAGCCGGAGGATGTCGGCCT+CGG + chr7_2:64256273-64256292 None:intergenic 65.0%
GAGGGAGGTAGGGGAGATGG+AGG + chr7_2:64256324-64256343 None:intergenic 65.0%
GGAGAGGGAGGTAGGGGAGA+TGG + chr7_2:64256327-64256346 None:intergenic 65.0%
GGGAGTCTTCCGCAGTGGCA+AGG + chr7_2:64256379-64256398 None:intergenic 65.0%
GGTTAGGGCAGCGGAGGATG+AGG + chr7_2:64256406-64256425 None:intergenic 65.0%
TCGCGGAGGAAGTGGAGGGT+TGG + chr7_2:64256461-64256480 None:intergenic 65.0%
AACCCTCCACTTCCTCCGCG+AGG - chr7_2:64256460-64256479 Msa1068880:CDS 65.0%
CTTCCTCGCGGAGGAAGTGG+AGG + chr7_2:64256466-64256485 None:intergenic 65.0%
GCCACTGCGGAAGACTCCCG+CGG - chr7_2:64256380-64256399 Msa1068880:CDS 70.0%
GCCACTGCGGAAGACTCCCG+CGG - chr7_2:64256380-64256399 Msa1068880:CDS 70.0%
GCCGCGGGAGTCTTCCGCAG+TGG + chr7_2:64256384-64256403 None:intergenic 75.0%
GCAGCGGAGGATGAGGCCGC+GGG + chr7_2:64256399-64256418 None:intergenic 75.0%
GGCAGCGGAGGATGAGGCCG+CGG + chr7_2:64256400-64256419 None:intergenic 75.0%
GCCGCGGGAGTCTTCCGCAG+TGG + chr7_2:64256384-64256403 None:intergenic 75.0%
GCAGCGGAGGATGAGGCCGC+GGG + chr7_2:64256399-64256418 None:intergenic 75.0%
GGCAGCGGAGGATGAGGCCG+CGG + chr7_2:64256400-64256419 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 64256011 64256865 64256011 ID=Msa1068880;Name=Msa1068880
chr7_2 mRNA 64256011 64256865 64256011 ID=Msa1068880-mRNA-1;Parent=Msa1068880;Name=Msa1068880-mRNA-1;_AED=0.27;_eAED=0.27;_QI=0|-1|0|1|-1|1|1|0|284
chr7_2 exon 64256011 64256865 64256011 ID=Msa1068880-mRNA-1:exon:13357;Parent=Msa1068880-mRNA-1
chr7_2 CDS 64256011 64256865 64256011 ID=Msa1068880-mRNA-1:cds;Parent=Msa1068880-mRNA-1
Gene Sequence

>Msa1068880

ATGTTCTTCGTCCAATCTTTCCACCATCACCAAACTTCATCTTCTTATCCTCCCTCTCAATTATCAAACTCTATAGTACCTAACCGTTATCCTAACAGAAACGGTTACATCAAGTTCAGAACAACCTACAATGAAAATCTCCATTACCTAAAAGCACTAACCATAATAAACCCCAACACAAAACCAGACAACCTCCCTCACCCAGACACTATCAACCACATCCTCACCATCATCACATTCCTCAAATCCCACTCCTTCACCGAGGCCGACATCCTCCGGCTAGTACACCATTCTCCCCAACTCTTCACAACCTCCATCTCCCCTACCTCCCTCTCCCCTATCTTCACCTTCCTTGCATCCGACCTCCTTGCCACTGCGGAAGACTCCCGCGGCCTCATCCTCCGCTGCCCTAACCTTCTCTTCACCGACGTAAACCACATCCTCAAACCAACCCTCCACTTCCTCCGCGAGGAAGTTGGAGTTAGTAACCTGAACAGGCCAACTAACAGGAACGCGCATCTTCTCAACACGCGTGTGGAGAAGATGCGCATGAGGTTGAGGTTTCTTGAGGAAGTGGTTGGGTTTACATACGAGGAAGCGAGGAATGTTTGTGCAAGGTTGCCGGCGATATTGGGGTACGATGTGGAGAATAACTTGTGGCCGAAGTTTGTGTATTTGGTGAAAGAGATGGAGAGGGAGGTGGAAGAGTTGAAGAAGTTTCCGCAGTTTTTTGGGTTTAGTTTGGAGAAGAGGATTGTTCCAAGGCATTTGCATTTGAAAGAAAGAGGTGTTAGGATTCCTTTGAATAGAATGTTGATGTGGGGTGATGATAAGTTCTATGCAAAGTGGAAGTGA

Protein sequence

>Msa1068880

MFFVQSFHHHQTSSSYPPSQLSNSIVPNRYPNRNGYIKFRTTYNENLHYLKALTIINPNTKPDNLPHPDTINHILTIITFLKSHSFTEADILRLVHHSPQLFTTSISPTSLSPIFTFLASDLLATAEDSRGLILRCPNLLFTDVNHILKPTLHFLREEVGVSNLNRPTNRNAHLLNTRVEKMRMRLRFLEEVVGFTYEEARNVCARLPAILGYDVENNLWPKFVYLVKEMEREVEELKKFPQFFGFSLEKRIVPRHLHLKERGVRIPLNRMLMWGDDKFYAKWK*