AlfalfaGEDB | Msa0302400

M. sativa cultivar zhongmu-4 / Msa0302400

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0019222 GO:0030677 GO:0030681 GO:0031047 GO:0031974 GO:0031981 GO:0032259 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080188 GO:0090304 GO:1901360 GO:1902494 GO:1902555 GO:1905348 GO:1990904
PFAM: PF03470.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0302400	XP_013465410.1	94.838	678	35	0	1	678	1	678	0.0	1211

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0302400	sp\|Q9LMH6\|FDM4_ARATH	48.582	529	250	6	145	669	216	726	4.17e-145	443

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0011170	Msa0302400	0.812476	4.158994e-51	-8.615850e-47
Msa0014710	Msa0302400	0.818341	2.062307e-52	-8.615850e-47
Msa0032110	Msa0302400	0.813319	2.718542e-51	-8.615850e-47
Msa0036140	Msa0302400	0.816828	4.521604e-52	-8.615850e-47
Msa0037880	Msa0302400	0.802569	5.272427e-49	-8.615850e-47
Msa0043980	Msa0302400	0.820057	8.384641e-53	-8.615850e-47
Msa0083280	Msa0302400	0.800046	1.731905e-48	-8.615850e-47
Msa0114060	Msa0302400	0.806831	6.796827e-50	-8.615850e-47
Msa0122590	Msa0302400	0.802500	5.448467e-49	-8.615850e-47
Msa0138020	Msa0302400	0.814045	1.881742e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0302400	MtrunA17_Chr2g0328241	94.838	678	35	0	1	678	1	678	0.0	1211
Msa0302400	MtrunA17_Chr2g0328251	78.242	694	135	1	1	678	1	694	0.0	1050
Msa0302400	MtrunA17_Chr4g0024031	75.354	706	110	4	1	678	1	670	0.0	971
Msa0302400	MtrunA17_Chr2g0327251	74.050	605	113	3	74	678	8	568	0.0	838
Msa0302400	MtrunA17_Chr2g0328231	73.846	390	61	4	305	678	2	366	0.0	531
Msa0302400	MtrunA17_Chr3g0111661	40.089	676	341	13	10	673	13	636	1.20e-152	456
Msa0302400	MtrunA17_Chr5g0435301	38.405	677	357	18	16	676	487	1119	3.40e-134	422
Msa0302400	MtrunA17_Chr4g0071151	76.426	263	46	3	420	678	3	253	1.67e-133	393
Msa0302400	MtrunA17_Chr4g0074301	36.701	673	351	17	16	676	19	628	3.13e-114	357
Msa0302400	MtrunA17_Chr4g0001231	35.629	668	351	18	21	676	24	624	8.81e-113	353

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0302400	AT1G13790.2	48.582	529	250	6	145	669	216	726	4.24e-146	443
Msa0302400	AT1G13790.2	49.333	75	33	3	17	88	11	83	4.65e-11	66.6
Msa0302400	AT1G13790.1	48.582	529	250	6	145	669	216	726	4.24e-146	443
Msa0302400	AT1G13790.1	49.333	75	33	3	17	88	11	83	4.65e-11	66.6
Msa0302400	AT3G48670.2	35.407	675	368	14	16	676	24	644	5.01e-115	359
Msa0302400	AT3G48670.1	35.407	675	368	14	16	676	24	644	5.01e-115	359
Msa0302400	AT3G48670.3	35.407	675	368	14	16	676	24	644	5.01e-115	359
Msa0302400	AT3G12550.5	35.251	678	375	14	16	677	8	637	2.97e-114	357
Msa0302400	AT3G12550.4	35.199	679	375	15	16	677	8	638	9.42e-113	353
Msa0302400	AT3G12550.2	35.199	679	375	15	16	677	8	638	9.42e-113	353

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Find 173 sgRNAs with CRISPR-Local

Find 300 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGGAGGAAATCAAAA+TGG	0.356376	2_3:-59147998	Msa0302400:CDS
AAAAGTTTGAAGGATGAGTT+CGG	0.454559	2_3:-59146556	Msa0302400:CDS
AAAATAAACGTGACCTGGGT+GGG	0.546156	2_3:+59150799	None:intergenic
AAAATTCATGACCTGGAGAG+AGG	0.591924	2_3:-59148120	Msa0302400:CDS
AAACTTATTGAGGCTTCATT+TGG	0.288030	2_3:-59146363	Msa0302400:exon
AAAGCAGAAGACTGATGAAT+TGG	0.362538	2_3:-59149124	Msa0302400:CDS
AAAGCGAAGACGCTTGTCTT+TGG	0.372401	2_3:-59149162	Msa0302400:CDS
AAAGTTGTGACTGATAAAGA+CGG	0.614387	2_3:-59146850	Msa0302400:CDS
AAAGTTTGAAGGATGAGTTC+GGG	0.354846	2_3:-59146555	Msa0302400:CDS
AAATTCCAGAGTTCCGGTAC+TGG	0.463412	2_3:+59146463	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTAATTATCATATGACACG+TGG	+	chr2_3:59146180-59146199	None:intergenic	30.0%
GACACTAGAAAATGATGAAA+CGG	+	chr2_3:59146444-59146463	None:intergenic	30.0%
CATTTCCAGAAAATTTCCTT+AGG	-	chr2_3:59146530-59146549	Msa0302400:CDS	30.0%
CGATTAACCAGTAGAAATTA+TGG	+	chr2_3:59146679-59146698	None:intergenic	30.0%
TACATTCAGTGATTAAATCG+AGG	+	chr2_3:59146825-59146844	None:intergenic	30.0%
CAGTAACTGAAAATAAACCA+TGG	+	chr2_3:59146973-59146992	None:intergenic	30.0%
TAGATATTACGAAGACTTGA+AGG	-	chr2_3:59147108-59147127	Msa0302400:intron	30.0%
TGATAGAATTGCTAGTGATA+AGG	-	chr2_3:59147351-59147370	Msa0302400:intron	30.0%
ACGTATTATGAATGTCGATA+AGG	-	chr2_3:59147435-59147454	Msa0302400:intron	30.0%
CGTATTATGAATGTCGATAA+GGG	-	chr2_3:59147436-59147455	Msa0302400:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	59146131	59150966	59146131	ID=Msa0302400;Name=Msa0302400
chr2_3	mRNA	59146131	59150966	59146131	ID=Msa0302400-mRNA-1;Parent=Msa0302400;Name=Msa0302400-mRNA-1;_AED=0.31;_eAED=0.31;_QI=539\|1\|1\|1\|0.83\|0.85\|7\|244\|678
chr2_3	exon	59146131	59146608	59146131	ID=Msa0302400-mRNA-1:exon:19132;Parent=Msa0302400-mRNA-1
chr2_3	exon	59146840	59147097	59146840	ID=Msa0302400-mRNA-1:exon:19131;Parent=Msa0302400-mRNA-1
chr2_3	exon	59147882	59148166	59147882	ID=Msa0302400-mRNA-1:exon:19130;Parent=Msa0302400-mRNA-1
chr2_3	exon	59148259	59148327	59148259	ID=Msa0302400-mRNA-1:exon:19129;Parent=Msa0302400-mRNA-1
chr2_3	exon	59148639	59148820	59148639	ID=Msa0302400-mRNA-1:exon:19128;Parent=Msa0302400-mRNA-1
chr2_3	exon	59149034	59150042	59149034	ID=Msa0302400-mRNA-1:exon:19127;Parent=Msa0302400-mRNA-1
chr2_3	exon	59150428	59150966	59150428	ID=Msa0302400-mRNA-1:exon:19126;Parent=Msa0302400-mRNA-1
chr2_3	five_prime_UTR	59150428	59150966	59150428	ID=Msa0302400-mRNA-1:five_prime_utr;Parent=Msa0302400-mRNA-1
chr2_3	CDS	59149034	59150042	59149034	ID=Msa0302400-mRNA-1:cds;Parent=Msa0302400-mRNA-1
chr2_3	CDS	59148639	59148820	59148639	ID=Msa0302400-mRNA-1:cds;Parent=Msa0302400-mRNA-1
chr2_3	CDS	59148259	59148327	59148259	ID=Msa0302400-mRNA-1:cds;Parent=Msa0302400-mRNA-1
chr2_3	CDS	59147882	59148166	59147882	ID=Msa0302400-mRNA-1:cds;Parent=Msa0302400-mRNA-1
chr2_3	CDS	59146840	59147097	59146840	ID=Msa0302400-mRNA-1:cds;Parent=Msa0302400-mRNA-1
chr2_3	CDS	59146375	59146608	59146375	ID=Msa0302400-mRNA-1:cds;Parent=Msa0302400-mRNA-1
chr2_3	three_prime_UTR	59146131	59146374	59146131	ID=Msa0302400-mRNA-1:three_prime_utr;Parent=Msa0302400-mRNA-1

Gene Sequence

>Msa0302400

ATGTCCAAAAGATCAAAACATACTCATGATTCGGATTATGAATACTACGAGAGTAGATATTACGAAGACTTGAAGGATGATTACTACAAGGACAAGCTCAAAATCTCTGATTCCAGGTATCGCTGTCCGTTTTGCTACAACAAGGATTACTACTCTTTGAGCGAGTTATTGAGACATGCTTCCAGAATTTTGGGTGACTCGCGTGAGACGGATAAAGAAATTGCTAAACACTCTGCTTTGAAAATGTATATTGAAAGGTATCTAGATGTTAAAGTTGATAGAATTAGGTTATCTGGTGATAGAATTGCTAGTGATAAGGTACCTGGTGTTAGTAATGCTAGTGATAAGACTGTTAATTTGAGTATCGCTAATGAGAAGTCACGTATTATGAATGTCGATAAGGGTCAGTTAGCTAACAAGAACATCGTTGATGATGAGTTGTTTGTCTGGCCATGGATGGTCATATTGGCTAACAATGTTACTAATTTTGACCCGAAAAGCGGAAAGTATGTTGGGAAGAATCATAAGAAAATTAAGGAGGAGCTGAACATGAAAGGGTTTCAGCCGATTAGAGTTACAACGCTGTGGAACCCTAGAGGACAAACACCCTTTGCCATTGTTGAATTTGGAAAAGAGTGGGATGGTTTCGACAATGCTATGAAGTTAGAGAGGAGCTTTCAGGCAGAGCACTGTGGTAAGAGGGATTACTTAGGTTTAAGGGAGCAGGAGCGAGGAGATAGACTATTTGGCTGGATGGCACGTCATGATGACTATAATTTAAAGGATATAGTTGGCAAACACCTGAAGGAAAATGTGGATTTGAAAACAGTTTCTGGAAAAGAAGCTGAGGACACAAGGAAAGCGAAGACGCTTGTCTTTGGTTTGGCCAATACCTTAAAGCAGAAGACTGATGAATTGGAACAGACAGCAAGCAAATATGATGAGGCTAATGCATTCCTAAGGAAAGTGATGGATCAAAAAGAGAAGATGCTTGAAGCTTTTAACGAGGAAATCAGCAAGATGCGGCAGGTTGAACGCGAGTATCAGGAGAAAGTATCGAAGGATCATGAAATAGCTAGGCGGGAACTGGAAGCTCGGAGGAATGAACTCAAGTCCCGTGAAAAGGATCTGCAGAAGCGTCAAGCAGATAATCTCAATGAGAGAAACAAGCTATATCTTGAGAAGAAAAATAATGAGATGGCAATAGAAGAGCAACAAAAGGCTGATGAAAAAATGATGTCTTTGGCTGAAGAACATAAGAAAGAAAAGGAGAAACTTCACAAGAAAATTCATGACCTGGAGAGAGGACTTGATGCAAAACAAGCATTGGAATTGGAGATAGAACGGCTGAAAGGAGCTTTCCAGGTAATGAATCACATTGGAGAGACTGATCTAGAAGAGAAGAAAAAACTGGAGGAAATCAAAATGGAGCTGCAGGAAAAAGAAGAGGAGTTGGAAGGCGTGGAAGATCTTCAACAGACACTGGTTGTTCAAGAGCGAAAAACTAATGACGAGTTGCAAGATGCCCGCAAAAAATTGATAAGTTGGATTGGATGCCCAAAGAAGGCTCCTCGAGCCATAATTTCTGTGAAAAGGATGGGTGAACTTGAGATTAAGCCATTTTTGGAAGCAGCCAAGAGAAAGTTTTCTGATGAAGTGAATGAGAAAAAAGCAACTAAAGCACAACTTCGCGAAAAATGGCAATTGAAAGCAATCGAGTGGTGCTCAAAGTGGGATGACTGTCTTAAAGATCCCAGCTGGCATCCGTTCAAAGTTGTGACTGATAAAGACGGGAAATCCATGGAAATTTTAGACGGAGAAGATGAAAAGCTAAAAAGTTTGAAGGATGAGTTCGGGGATGAGGTGCATGATGCAGTAGCTACAGCTCTGAAGGAGTTAAACGAGTACAACCCTAGTGGTAGGTACCCAGTACCGGAACTCTGGAATTTTAGGGAAGGAAGGAAAGCCTCGTTGAAGGAGGGTGTTTCCCATTTAATTAGGCAATGGAAATCAAATAAGGGAAAGAAAACTTATTGA

Protein sequence

>Msa0302400

MSKRSKHTHDSDYEYYESRYYEDLKDDYYKDKLKISDSRYRCPFCYNKDYYSLSELLRHASRILGDSRETDKEIAKHSALKMYIERYLDVKVDRIRLSGDRIASDKVPGVSNASDKTVNLSIANEKSRIMNVDKGQLANKNIVDDELFVWPWMVILANNVTNFDPKSGKYVGKNHKKIKEELNMKGFQPIRVTTLWNPRGQTPFAIVEFGKEWDGFDNAMKLERSFQAEHCGKRDYLGLREQERGDRLFGWMARHDDYNLKDIVGKHLKENVDLKTVSGKEAEDTRKAKTLVFGLANTLKQKTDELEQTASKYDEANAFLRKVMDQKEKMLEAFNEEISKMRQVEREYQEKVSKDHEIARRELEARRNELKSREKDLQKRQADNLNERNKLYLEKKNNEMAIEEQQKADEKMMSLAEEHKKEKEKLHKKIHDLERGLDAKQALELEIERLKGAFQVMNHIGETDLEEKKKLEEIKMELQEKEEELEGVEDLQQTLVVQERKTNDELQDARKKLISWIGCPKKAPRAIISVKRMGELEIKPFLEAAKRKFSDEVNEKKATKAQLREKWQLKAIEWCSKWDDCLKDPSWHPFKVVTDKDGKSMEILDGEDEKLKSLKDEFGDEVHDAVATALKELNEYNPSGRYPVPELWNFREGRKASLKEGVSHLIRQWKSNKGKKTY*